BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15877
(517 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Homo sapiens
GN=USP9X PE=1 SV=3
Length = 2570
Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats.
Identities = 135/367 (36%), Positives = 194/367 (52%), Gaps = 59/367 (16%)
Query: 160 PNLDTVLSLIKIIWAASRGDFEMKAAPVEVFTRRTNEMFALDGEENSSAPGGDNAQGDTK 219
P++ + ++ KIIWA+ G ++ +P E T+ + A G E
Sbjct: 1234 PDICVIRAIQKIIWASGCGSLQLVFSPNEEITKIYEKTNA--GNEP-------------- 1277
Query: 220 DIDLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACV 279
DL+D VC EALE++T+CF L + L AL KE+ + F+ D LL C K +R
Sbjct: 1278 --DLEDEQVCCEALEVMTLCFALIPTALDAL---SKEKAWQTFIIDLLLHCHSKTVRQVA 1332
Query: 280 QEQLTLSVTLSYAYASNAEQAC-----LVAFLQLLFPLLTSDALETRVYTKSAEYFQLFC 334
QEQ L T + C L+ F+ LLF +L S A E + S +YF L
Sbjct: 1333 QEQFFLMCT----------RCCMGHRPLLFFITLLFTVLGSTARERAKH--SGDYFTLLR 1380
Query: 335 RTLNFV-SSSVWIGAGSVLSTGIDVEKYLTQELAVLKRLSVGAKKSGQRDI---LLQGHL 390
LN+ +S++ + VL L E+ LKR+ K++G+ I +L+GHL
Sbjct: 1381 HLLNYAYNSNINVPNAEVL---------LNNEIDWLKRIRDDVKRTGETGIEETILEGHL 1431
Query: 391 SIVKELVCFLNSEKKMEFGVTNG---LIRDLINDYLFPTSKLMLKLEKTGEISFNEIAPA 447
+ KEL+ F SEKK G G LI++LI+D++FP S + L+ + GE+ + P
Sbjct: 1432 GVTKELLAFQTSEKKFHIGCEKGGANLIKELIDDFIFPASNVYLQYMRNGELPAEQAIP- 1490
Query: 448 VCQSPESISAGFSLLIGLCTGSVPNLKLLVAMLTDMFYPDCA----EPLTEWDYLPPIGP 503
VC SP +I+AGF LL+ L G V NLK +V LT+M+Y A E LTEW+YLPP+GP
Sbjct: 1491 VCGSPPTINAGFELLVALAVGCVRNLKQIVDSLTEMYYIGTAITTCEALTEWEYLPPVGP 1550
Query: 504 KPPKGFV 510
+PPKGFV
Sbjct: 1551 RPPKGFV 1557
>sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-Y OS=Homo sapiens
GN=USP9Y PE=1 SV=2
Length = 2555
Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 134/367 (36%), Positives = 197/367 (53%), Gaps = 58/367 (15%)
Query: 160 PNLDTVLSLIKIIWAASRGDFEMKAAPVEVFTRRTNEMFALDGEENSSAPGGDNAQGDTK 219
P++ + ++ KIIWA++ G + +P E T+ ++ + G N
Sbjct: 1235 PDICVIRAIQKIIWASACGALGLVFSPNEEITK----IYQM-------TTNGSNK----- 1278
Query: 220 DIDLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACV 279
++++D VC EALE++T+CF L + L AL KE+ + F+ D LL C K +R
Sbjct: 1279 -LEVEDEQVCCEALEVMTLCFALLPTALDAL---SKEKAWQTFIIDLLLHCPSKTVRQLA 1334
Query: 280 QEQLTLSVTLSYAYASNAEQAC-----LVAFLQLLFPLLTSDALETRVYTKSAEYFQLFC 334
QEQ L T + C L+ F+ LLF +L S A E Y S +YF L
Sbjct: 1335 QEQFFLMCT----------RCCMGHRPLLFFITLLFTILGSTAREKGKY--SGDYFTLLR 1382
Query: 335 RTLNFV-SSSVWIGAGSVLSTGIDVEKYLTQELAVLKRLSVGAKKSGQRDI---LLQGHL 390
LN+ + ++ I VL L E+ LKR+ K +G+ + +L+GHL
Sbjct: 1383 HLLNYAYNGNINIPNAEVL---------LVSEIDWLKRIRDNVKNTGETGVEEPILEGHL 1433
Query: 391 SIVKELVCFLNSEKKMEFGVTNG---LIRDLINDYLFPTSKLMLKLEKTGEISFNEIAPA 447
+ KEL+ F SEKK FG G LI++LI+D++FP SK+ L+ ++GE+ + P
Sbjct: 1434 GVTKELLAFQTSEKKYHFGCEKGGANLIKELIDDFIFPASKVYLQYLRSGELPAEQAIP- 1492
Query: 448 VCQSPESISAGFSLLIGLCTGSVPNLKLLVAMLTDMFYPDCA----EPLTEWDYLPPIGP 503
VC SP +I+AGF LL+ L G V NLK +V LT+M+Y A E LTEW+YLPP+GP
Sbjct: 1493 VCSSPVTINAGFELLVALAIGCVRNLKQIVDCLTEMYYMGTAITTCEALTEWEYLPPVGP 1552
Query: 504 KPPKGFV 510
+PPKGFV
Sbjct: 1553 RPPKGFV 1559
>sp|P70398|USP9X_MOUSE Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Mus musculus
GN=Usp9x PE=1 SV=2
Length = 2559
Score = 192 bits (487), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 132/367 (35%), Positives = 192/367 (52%), Gaps = 59/367 (16%)
Query: 160 PNLDTVLSLIKIIWAASRGDFEMKAAPVEVFTRRTNEMFALDGEENSSAPGGDNAQGDTK 219
P++ + ++ KIIW + G ++ +P E T+ + A G E
Sbjct: 1234 PDICVIRAIQKIIWTSGCGGLQLVFSPNEEVTKIYEKTNA--GNEP-------------- 1277
Query: 220 DIDLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACV 279
DL+D VC EALE++T+CF L + L AL KE+ + F+ D LL C K +R
Sbjct: 1278 --DLEDEQVCCEALEVMTLCFALIPTALDAL---SKEKAWQTFIIDLLLHCHSKTVRQVA 1332
Query: 280 QEQLTLSVTLSYAYASNAEQAC-----LVAFLQLLFPLLTSDALETRVYTKSAEYFQLFC 334
QEQ L T + C L+ F+ LLF +L S A E + S +YF L
Sbjct: 1333 QEQFFLMCT----------RCCMGHRPLLFFITLLFTVLGSTARERAKH--SGDYFTLLR 1380
Query: 335 RTLNFV-SSSVWIGAGSVLSTGIDVEKYLTQELAVLKRLSVGAKKSGQ---RDILLQGHL 390
LN+ +S++ + VL L E+ LKR+ K++G+ + +L+GHL
Sbjct: 1381 HLLNYAYNSNINVPNAEVL---------LNNEIDWLKRIRDDVKRTGETGVEETILEGHL 1431
Query: 391 SIVKELVCFLNSEKKMEFGVTNG---LIRDLINDYLFPTSKLMLKLEKTGEISFNEIAPA 447
+ KEL+ F EKK G G LI++LI+D++FP S + L+ + GE+ + P
Sbjct: 1432 GVTKELLAFQTPEKKFHIGCEKGGANLIKELIDDFIFPASNVYLQYMRNGELPAEQAIP- 1490
Query: 448 VCQSPESISAGFSLLIGLCTGSVPNLKLLVAMLTDMFYPDCA----EPLTEWDYLPPIGP 503
VC SP +I+AGF LL+ L G V NLK +V LT+M+Y A E LTEW+YLPP+GP
Sbjct: 1491 VCGSPATINAGFELLVALAVGCVRNLKQIVDSLTEMYYIGTAITTCEALTEWEYLPPVGP 1550
Query: 504 KPPKGFV 510
+PPKGFV
Sbjct: 1551 RPPKGFV 1557
>sp|P55824|FAF_DROME Probable ubiquitin carboxyl-terminal hydrolase FAF OS=Drosophila
melanogaster GN=faf PE=1 SV=2
Length = 2778
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 195/420 (46%), Gaps = 75/420 (17%)
Query: 108 LSLIKNTSNVKPGSTSPNVNTAPTSPNITTGPNIATSSPSDITTHSLVLSI----SPNLD 163
+ ++K + P S+ + + + ++SP +L S P++
Sbjct: 1305 VDILKQNFSTMPSSSQGTLRAISAKLAVILAREMLSASPEGDRCRTLFSSTLQWSCPDIS 1364
Query: 164 TVLSLIKIIWAASRGDFEMKAAPVEVFTRRTNEMFALDGEENSSAPGGDNAQGDTKDI-- 221
T+ +++++ WA+S G N A G N+ GD +D
Sbjct: 1365 TIKAVVQLAWASSCG--------------------------NLQALG--NSSGDFEDEVI 1396
Query: 222 --DLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACV 279
D D +CKEALE+LT+ F+LN S +AL +P + F+ +L + +R
Sbjct: 1397 VPDGQDFSMCKEALEVLTISFILNPSANEALTSDPN---WPKFITSIVLKNPLRHVRQVA 1453
Query: 280 QEQLTLSVTLS------YAYASNAEQACLVAFLQLLFPLLTSDALETRVYTKSAEYFQLF 333
EQL L+ T + Y N LV L+ L P S AE+F +
Sbjct: 1454 SEQLFLASTYCAGDRRPFVYMVN----LLVGALKTLVPQYESTC---------AEFFSVL 1500
Query: 334 CRTLNFVSSSVWIGAGSVLSTGIDV-EKYLTQELAVLKRLSVGAKKSGQRDI---LLQGH 389
CRTL++ G + + + + E L E+ L+R+ +G + LL+GH
Sbjct: 1501 CRTLSY---------GCIYNWPLQISEGLLGDEIKWLQRIRENVHATGDTQVHEELLEGH 1551
Query: 390 LSIVKELVCFLNSEKKMEFGVTNGLIRDLINDYLFPTSKLMLKLEKTGEISFNEIAPAVC 449
L + KEL+ FL ++ K + N LI +LI+D+LF S+ L L + G + + + P VC
Sbjct: 1552 LCLAKELMFFLGADSKAQL---NELIHELIDDFLFTASREFLHLRRHGSLRQDTVPPPVC 1608
Query: 450 QSPESISAGFSLLIGLCTGSVPNLKLLVAMLTDMFYPDCAEPLTEWDYLPPIGPKPPKGF 509
+SP +I+A LLI LC VPN+KLL L D D +PL EWDYLPP+G +P KGF
Sbjct: 1609 RSPHTIAAACDLLIALCQLCVPNMKLLTNTLIDFVCTD-TDPLREWDYLPPVGARPTKGF 1667
>sp|Q9UPU5|UBP24_HUMAN Ubiquitin carboxyl-terminal hydrolase 24 OS=Homo sapiens GN=USP24
PE=1 SV=3
Length = 2620
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 139/302 (46%), Gaps = 31/302 (10%)
Query: 225 DILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQL- 283
D L+ EAL LL C L + L + P A F+ D LL IR +QL
Sbjct: 1403 DSLIAGEALSLLVTCLQLRSQQLASFYNLP---CVADFIIDILLGSPSAEIRRVACDQLY 1459
Query: 284 TLSVTLSYAY--ASNAEQACLVAFLQLLFPLLT----SDALETRVYTKSAEYFQLFCRTL 337
TLS T + A+ Q L L PL + + R+ ++ EYF L C+ L
Sbjct: 1460 TLSQTDTSAHPDVQKPNQFLLGVILTAQLPLWSPTSIMRGVNQRLLSQCMEYFDLRCQLL 1519
Query: 338 NFVSSSVWIGAGSVLSTGIDVEKYLTQELAVLKRL----SVGAKKSGQRDILLQGHLSIV 393
+ +++S + I L E+ L + + S +ILL GHL ++
Sbjct: 1520 DDLTTS------EMEQLRISPATMLEDEITWLDNFEPNRTAECETSEADNILLAGHLRLI 1573
Query: 394 KELVCFLNSEKKMEFGVTNGLIRDLINDYLFPTSKLMLKLEK---TGEISFNEIAPAVCQ 450
K L+ +EK+M + + LI+ L++D+LF S+++L + IS + P C
Sbjct: 1574 KTLLSLCGAEKEM---LGSSLIKPLLDDFLFRASRIILNSHSPAGSAAISQQDFHPK-CS 1629
Query: 451 SPESISAGFSLLIGLCTGSVPNLKLLVAMLTDMFY-PDCAEPLT-EWDYLPPIGPKPPKG 508
+ S A + +L+ L S NL++++ L M + PD A LT E+DYLPP+ + G
Sbjct: 1630 TANSRLAAYEVLVMLADSSPSNLQIIIKELLSMHHQPDPA--LTKEFDYLPPVDSRSSSG 1687
Query: 509 FV 510
FV
Sbjct: 1688 FV 1689
>sp|B1AY13|UBP24_MOUSE Ubiquitin carboxyl-terminal hydrolase 24 OS=Mus musculus GN=Usp24
PE=1 SV=1
Length = 2617
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 166/380 (43%), Gaps = 53/380 (13%)
Query: 164 TVLSLIKIIWAASRGDFEMKAAPVEVFTRRTNEMF-----------------ALDGEENS 206
TV +++ WAA+ G ++ + + + +N +F + +GE +
Sbjct: 1327 TVACFMRLSWAAAAGRLDLVGSSQPI--KESNSLFPAGIRSRLSSSGSNCSSSSEGEPAA 1384
Query: 207 SAPGGDNAQGDTKDIDLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDT 266
G Q + + D L+ EAL LL C L + L + P A F+ D
Sbjct: 1385 LHAGICVRQ---QSVSTKDALIAGEALSLLVTCLQLRSQQLASFYSLP---CVADFIIDI 1438
Query: 267 LLLCDEKIIRACVQEQL-TLSVTLSYAY--ASNAEQACLVAFLQLLFPLLT----SDALE 319
LL IR +QL TLS T + A+ Q L L PL + +
Sbjct: 1439 LLGSPSAEIRRVACDQLYTLSQTDTSAHPEVQKPNQFLLGVILTAQLPLWSPTSIMRGVN 1498
Query: 320 TRVYTKSAEYFQLFCRTLNFVSSSVWIGAGSVLSTGIDVEKYLTQELAVLKRL----SVG 375
R+ ++ EYF L C+ L+ +++S + I L E+ L +
Sbjct: 1499 QRLLSQCMEYFDLRCQLLDDLTTS------EMDQLRISPATMLEDEITWLDNFEPNRTAD 1552
Query: 376 AKKSGQRDILLQGHLSIVKELVCFLNSEKKMEFGVTNGLIRDLINDYLFPTSKLMLKLEK 435
+ S +ILL GHL ++K L+ +EK+M + + LI+ L++D+LF S++++
Sbjct: 1553 CETSEADNILLAGHLRLIKTLLSLCGAEKEM---LGSSLIKPLLDDFLFRASRIIVNSHS 1609
Query: 436 ---TGEISFNEIAPAVCQSPESISAGFSLLIGLCTGSVPNLKLLVAMLTDMFY-PDCAEP 491
+ IS + P C + S A + +L+ L S NL+++ L M + PD A
Sbjct: 1610 PASSAAISQQDFHPK-CSTVNSRLAAYEVLVMLADSSPSNLQIITKELLSMHHQPDPA-- 1666
Query: 492 LT-EWDYLPPIGPKPPKGFV 510
LT E+DYLPP+ + GFV
Sbjct: 1667 LTKEFDYLPPVDSRSSSGFV 1686
>sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3 OS=Mus musculus
GN=Pkd1l3 PE=2 SV=2
Length = 2201
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 19/165 (11%)
Query: 4 GPNITTGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSI-SNTSNVKPG 62
G + T SP TS PG +SP T + +SSP +T+ + S + ++ P
Sbjct: 385 GTSETPASNSPPQGTSET-PGFSSPPQVTTATLVSSSPPQVTSETPASSSPTQVTSETPA 443
Query: 63 STSPNVTT----APVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVK 118
S+SP T A SP T SSP+ +TT +LV S P + TS+
Sbjct: 444 SSSPTQVTSDTPASNSPPQGTSDTPGFSSPTQVTTATLVSSSPPQV---------TSDTP 494
Query: 119 PGSTSPNVNT---APTSPNITTGPNIATSSPSDITTHSLVLSISP 160
S+ P V + A +SP T A+SSP +T+ + SISP
Sbjct: 495 ASSSPPQVTSDTPASSSPPQVTSETPASSSPPQVTSDTSA-SISP 538
Score = 35.8 bits (81), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 8 TTGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSI--SNTSNVKPGSTS 65
T +SP TS+ P S SP T SSP+ +TT +LV S TS+ S+
Sbjct: 441 TPASSSPTQVTSDT-PASNSPPQGTSDTPGFSSPTQVTTATLVSSSPPQVTSDTPASSSP 499
Query: 66 PNVTT---APVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKPGST 122
P VT+ A SP T A+SSP +T+ + SISP +I +T P S+
Sbjct: 500 PQVTSDTPASSSPPQVTSETPASSSPPQVTSDTSA-SISPP-----QVISDT----PASS 549
Query: 123 SPNVNTAPT----SPNITTGPNIATSSPSDITT 151
SP T+ T SP T A+SSP+++T+
Sbjct: 550 SPPQVTSETPASSSPTNMTSDTPASSSPTNMTS 582
>sp|O15016|TRI66_HUMAN Tripartite motif-containing protein 66 OS=Homo sapiens GN=TRIM66
PE=2 SV=4
Length = 1216
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 36 IATSSPSDITTHSLVLSISNTSNVKPGSTSPNVTTAPVSPNITTGPNVATSSPSDITTHS 95
I SSP+ + HS LSI SN S P+ P I + N+ +P + +
Sbjct: 615 IQHSSPNVVRKHSTSLSIMGFSNTLEMELSSTRLERPLEPQIQSVSNLTAGAPQAVPS-- 672
Query: 96 LVLSISPNLDTVLSLIKNTSNVKPGSTSPNVNTAPT--SPNITTGPNIATSSPSDITT 151
+LS P + + L+ ++N P T+ ++ T P+ + PN+ + SP + +
Sbjct: 673 -LLSAPPKMVSSLTSVQN--QAMPSLTTSHLQTVPSLVHSTFQSMPNLISDSPQAMAS 727
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,822,066
Number of Sequences: 539616
Number of extensions: 7925927
Number of successful extensions: 26105
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 647
Number of HSP's that attempted gapping in prelim test: 20479
Number of HSP's gapped (non-prelim): 3889
length of query: 517
length of database: 191,569,459
effective HSP length: 122
effective length of query: 395
effective length of database: 125,736,307
effective search space: 49665841265
effective search space used: 49665841265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)