Query psy15877
Match_columns 517
No_of_seqs 113 out of 126
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 23:53:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hxt_A De novo protein OR329; 89.7 6.7 0.00023 35.3 13.7 64 221-289 11-74 (252)
2 3grl_A General vesicular trans 85.3 21 0.0007 39.8 16.5 108 221-339 131-242 (651)
3 4db8_A Armadillo-repeat protei 85.2 8.5 0.00029 35.1 11.7 64 221-289 21-84 (252)
4 3tpo_A Importin subunit alpha- 72.0 98 0.0033 32.2 17.8 61 224-289 132-192 (529)
5 4b8j_A Importin subunit alpha- 70.5 66 0.0022 33.0 14.2 59 226-289 132-190 (528)
6 4fdd_A Transportin-1; heat rep 70.2 28 0.00096 38.3 12.0 190 225-472 599-789 (852)
7 4db6_A Armadillo repeat protei 68.9 15 0.00051 32.5 7.8 63 221-288 147-209 (210)
8 4db6_A Armadillo repeat protei 66.1 19 0.00064 31.9 7.9 64 221-289 21-84 (210)
9 3ul1_B Importin subunit alpha- 65.6 1.3E+02 0.0045 31.1 17.2 60 225-289 114-173 (510)
10 2jdq_A Importin alpha-1 subuni 64.7 1.1E+02 0.0037 30.0 16.8 63 223-289 118-180 (450)
11 1xqr_A HSPBP1 protein; armadil 63.0 27 0.00092 34.5 9.1 111 223-343 178-288 (296)
12 2jdq_A Importin alpha-1 subuni 60.9 1.2E+02 0.0042 29.6 13.5 60 225-289 78-137 (450)
13 2qk2_A LP04448P; mini spindles 57.0 1.2E+02 0.004 27.8 12.9 64 221-289 24-87 (242)
14 1elk_A Target of MYB1; superhe 52.1 34 0.0012 30.9 7.1 62 224-288 66-130 (157)
15 1x5b_A Signal transducing adap 50.6 40 0.0014 30.7 7.3 62 223-288 63-125 (163)
16 1wa5_B Importin alpha subunit; 49.6 2.3E+02 0.0078 29.0 16.1 61 224-289 185-245 (530)
17 4hxt_A De novo protein OR329; 48.5 46 0.0016 29.7 7.4 64 221-289 179-242 (252)
18 2qk1_A Protein STU2; STU2P, XM 44.9 93 0.0032 29.4 9.3 202 221-479 25-233 (249)
19 4b8j_A Importin subunit alpha- 44.6 2.7E+02 0.0092 28.3 17.1 63 223-289 171-233 (528)
20 4db8_A Armadillo-repeat protei 43.6 50 0.0017 29.9 6.9 63 221-289 63-126 (252)
21 1xqr_A HSPBP1 protein; armadil 43.6 56 0.0019 32.1 7.7 65 221-289 91-155 (296)
22 3ldz_A STAM-1, signal transduc 37.1 66 0.0023 28.4 6.4 60 224-288 54-114 (140)
23 1wa5_B Importin alpha subunit; 35.5 3.7E+02 0.013 27.3 15.7 60 225-289 144-203 (530)
24 3opb_A SWI5-dependent HO expre 34.4 2.2E+02 0.0075 32.3 11.4 55 232-289 232-286 (778)
25 3g2s_A C-terminal fragment of 33.5 1.2E+02 0.004 27.3 7.5 64 222-289 58-127 (149)
26 1juq_A ADP-ribosylation factor 33.2 1.4E+02 0.0047 27.3 8.0 62 223-288 61-128 (171)
27 3zyq_A Hepatocyte growth facto 30.6 85 0.0029 29.8 6.4 64 221-288 54-118 (226)
28 1dvp_A HRS, hepatocyte growth 29.6 1.3E+02 0.0043 28.3 7.3 64 221-288 51-115 (220)
29 1mhq_A ADP-ribosylation factor 29.5 1.4E+02 0.0047 26.6 7.2 63 222-288 48-116 (148)
30 4fdd_A Transportin-1; heat rep 27.9 6.2E+02 0.021 27.5 17.8 29 451-479 642-670 (852)
31 1jdh_A Beta-catenin; beta-cate 27.5 1.2E+02 0.0042 30.4 7.3 64 222-289 27-90 (529)
32 3tt9_A Plakophilin-2; cell adh 26.6 1.8E+02 0.0063 27.6 8.0 64 221-289 17-82 (233)
33 2vgl_B AP-2 complex subunit be 24.8 6.2E+02 0.021 26.5 13.7 181 221-484 327-510 (591)
34 4ffb_C Protein STU2; tubulin f 24.7 3.2E+02 0.011 25.5 9.4 143 225-402 68-216 (278)
No 1
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=89.68 E-value=6.7 Score=35.35 Aligned_cols=64 Identities=16% Similarity=0.033 Sum_probs=47.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 221 IDLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 221 l~~eD~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
+..+|..+..+|+..|.......++....+.+. .-++.++ .+ |.++++.||..++..|..++..
T Consensus 11 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---g~i~~L~-~l-l~~~~~~v~~~a~~~L~~l~~~ 74 (252)
T 4hxt_A 11 LTSTDSETQKEAARDLAEIASGPASAIKAIVDA---GGVEVLV-KL-LTSTDSEVQKEAARALANIASG 74 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT---THHHHHH-HH-TTCSCHHHHHHHHHHHHHHTTS
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC---CCHHHHH-HH-HhCCCHHHHHHHHHHHHHHHcC
Confidence 445567788888888754444456688888877 5555554 55 5888999999999999999865
No 2
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=85.26 E-value=21 Score=39.81 Aligned_cols=108 Identities=19% Similarity=0.109 Sum_probs=71.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHhCHH-HHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcccccccchhHH
Q psy15877 221 IDLDDILVCKEALELLTVCFLLNNS-LLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTLSYAYASNAEQ 299 (517)
Q Consensus 221 l~~eD~~V~~eALeLLv~cL~l~~~-~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~s~s~~~~~~~ 299 (517)
++.+|..+=-+++.+|...+..+++ .++.+... +.--.-|+++ |.++++.||.++.-.|..++.... . -
T Consensus 131 L~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~---p~gi~~Lv~l-L~d~rE~iRneallLL~~Lt~~n~-----~-i 200 (651)
T 3grl_A 131 LEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVS---PMGVSRLMDL-LADSREVIRNDGVLLLQALTRSNG-----A-I 200 (651)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHS---TTHHHHHHGG-GGCSSHHHHHHHHHHHHHHHTTCH-----H-H
T ss_pred hcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhC---cccHHHHHHH-HhCchHHHHHHHHHHHHHHhcCCH-----H-H
Confidence 5678888889999999988888877 88988877 4433344566 699999999999999999987621 1 2
Q ss_pred hHHHHH---HHHHHhhhhhhhhhccCCCCCHHHHHHHHHHhhh
Q psy15877 300 ACLVAF---LQLLFPLLTSDALETRVYTKSAEYFQLFCRTLNF 339 (517)
Q Consensus 300 ~pllff---L~lLl~~L~~~a~e~~~~~~C~EYF~LLCrLLd~ 339 (517)
+-+..| ...||..+..... -..+---.+-+.|+..|+++
T Consensus 201 QklVAFEnaFe~Lf~Ii~~Eg~-~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 201 QKIVAFENAFERLLDIITEEGN-SDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTG-GGSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHhcCC-CccchhHHHHHHHHHHHHhc
Confidence 222223 4555554333210 00012234667777777755
No 3
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=85.20 E-value=8.5 Score=35.13 Aligned_cols=64 Identities=13% Similarity=0.067 Sum_probs=48.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 221 IDLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 221 l~~eD~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
+.++|..+..+|...|...+.......+.+.+. .-++.++ .+ |.++++.||..++..|..++..
T Consensus 21 L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~---g~i~~L~-~l-L~~~~~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 21 LNSDDMQEQLSATRKFSQILSDGNEQIQAVIDA---GALPALV-QL-LSSPNEQILQEALWALSNIASG 84 (252)
T ss_dssp HHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHT---THHHHHH-HG-GGCSCHHHHHHHHHHHHHHTTS
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHc---CcHHHHH-HH-HcCCCHHHHHHHHHHHHHHhcC
Confidence 556677788888888755555566777778777 5555554 44 5788899999999999999864
No 4
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=72.01 E-value=98 Score=32.16 Aligned_cols=61 Identities=18% Similarity=-0.004 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 224 DDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 224 eD~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
++..+-.+|.+.|.-....+++....+... ..++.|+ . ||.++++.||..++..|..|+..
T Consensus 132 ~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~---Gaip~Lv-~-LL~s~~~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 132 DCSPIQFESAWALTNIASGTSEQTKAVVDG---GAIPAFI-S-LLASPHAHISEQAVWALGNIAGA 192 (529)
T ss_dssp TCHHHHHHHHHHHHHHHTSCHHHHHHHHHT---THHHHHH-H-HTTCSCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHC---CCHHHHH-H-HHcCCCHHHHHHHHHHHHHHhcc
Confidence 346777788888765444567777788877 6677666 3 57999999999999999999875
No 5
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=70.52 E-value=66 Score=32.96 Aligned_cols=59 Identities=15% Similarity=-0.075 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 226 ILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 226 ~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
..+-.+|.+.|......+++....+... ..++.++ .+ |.++++.||..++..|..||..
T Consensus 132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~---g~i~~L~-~l-L~~~~~~v~~~a~~aL~~l~~~ 190 (528)
T 4b8j_A 132 PQLQFEAAWALTNIASGTSENTKVVIDH---GAVPIFV-KL-LGSSSDDVREQAVWALGNVAGD 190 (528)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHT---THHHHHH-HH-TTCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhC---CcHHHHH-HH-hcCCCHHHHHHHHHHHHHHhCC
Confidence 6777888888754444457788888777 5555554 44 5889999999999999999865
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=70.15 E-value=28 Score=38.31 Aligned_cols=190 Identities=12% Similarity=0.040 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcccccccchhHHhH-HH
Q psy15877 225 DILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTLSYAYASNAEQAC-LV 303 (517)
Q Consensus 225 D~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~s~s~~~~~~~~p-ll 303 (517)
|..+..-++.+|......-.+....+... +.+-..+..+ +.++.+.||..+...+-.++.. +... -.+ ..
T Consensus 599 d~~~~~~~l~~l~~l~~~l~~~~~~~~~~---~~~~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~---~~~~--~~~~l~ 669 (852)
T 4fdd_A 599 DKDFMIVALDLLSGLAEGLGGNIEQLVAR---SNILTLMYQC-MQDKMPEVRQSSFALLGDLTKA---CFQH--VKPCIA 669 (852)
T ss_dssp CTHHHHHHHHHHHHHHHHHGGGGHHHHHT---CCHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHH---CGGG--TGGGHH
T ss_pred cchHHHHHHHHHHHHHHHHhHhHHHHhcC---CcHHHHHHHH-hCCCChhHHHHHHHHHHHHHHH---hhHH--HHHHHH
Confidence 44455556666544333222223333323 3455555555 4889999999999999988864 2111 223 23
Q ss_pred HHHHHHHhhhhhhhhhccCCCCCHHHHHHHHHHhhhhccccccccCCCcccccCHHHHHHHHHHHHhccccccccCCCCc
Q psy15877 304 AFLQLLFPLLTSDALETRVYTKSAEYFQLFCRTLNFVSSSVWIGAGSVLSTGIDVEKYLTQELAVLKRLSVGAKKSGQRD 383 (517)
Q Consensus 304 ffL~lLl~~L~~~a~e~~~~~~C~EYF~LLCrLLd~l~~s~~~~~gs~~~~~iDie~LL~qeI~~L~~~~~~e~~t~e~D 383 (517)
.++..|.+.|.. +. ...|..--|.+..+...+...-. +. +..++..++.-|.+-.. ..
T Consensus 670 ~~lp~l~~~l~~---~~--~~v~~~a~~alg~i~~~~~~~~~--------p~--~~~il~~L~~~l~~~~~-------~~ 727 (852)
T 4fdd_A 670 DFMPILGTNLNP---EF--ISVCNNATWAIGEISIQMGIEMQ--------PY--IPMVLHQLVEIINRPNT-------PK 727 (852)
T ss_dssp HHHHHHHHTCCT---TS--HHHHHHHHHHHHHHHHHHGGGGG--------GG--THHHHHHHHHHHTCSSC-------CH
T ss_pred HHHHHHHHHcCc---cc--hHHHHHHHHHHHHHHHHhhHhHH--------HH--HHHHHHHHHHHhCCCCC-------Cc
Confidence 356666655422 11 34456667777777665533211 22 35667776666653110 22
Q ss_pred chHhhHHHHHHHHHhccCCcchhccCCccchHHHHHhccCCCChhhhHhhhhcCCCCccCcCCCccCCHHHHHHHHHHHH
Q psy15877 384 ILLQGHLSIVKELVCFLNSEKKMEFGVTNGLIRDLINDYLFPTSKLMLKLEKTGEISFNEIAPAVCQSPESISAGFSLLI 463 (517)
Q Consensus 384 ~lL~GlLnL~k~Ll~~l~~~Kk~~iGs~~~LIkeLf~dfLFPas~~~~~~~~~~e~~~~d~~~PkCKS~~SR~AAfdLLv 463 (517)
.+.+.....+..|....+..-. ..+.+++..++= .-|+....+-|..||+-|.
T Consensus 728 ~~~~~a~~~igrl~~~~~~~~~-------~~l~~~~~~~~~--------------------~l~~~~d~~e~~~a~~~l~ 780 (852)
T 4fdd_A 728 TLLENTAITIGRLGYVCPQEVA-------PMLQQFIRPWCT--------------------SLRNIRDNEEKDSAFRGIC 780 (852)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHG-------GGHHHHHHHHHH--------------------HHHTSCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCHHHhC-------ccHHHHHHHHHH--------------------HhccccccHHHHHHHHHHH
Confidence 3444444444444443221111 122232221110 1122233467999999999
Q ss_pred HHhhCCHHH
Q psy15877 464 GLCTGSVPN 472 (517)
Q Consensus 464 eL~k~c~~N 472 (517)
.+++..|..
T Consensus 781 ~li~~~p~~ 789 (852)
T 4fdd_A 781 TMISVNPSG 789 (852)
T ss_dssp HHHHHCGGG
T ss_pred HHHHhChHh
Confidence 999887763
No 7
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=68.88 E-value=15 Score=32.52 Aligned_cols=63 Identities=17% Similarity=0.064 Sum_probs=46.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q psy15877 221 IDLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVT 288 (517)
Q Consensus 221 l~~eD~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~ 288 (517)
+..+|..+.++|+..|......+++....+... ..++. |.++ |.++++.||+.++..|..++.
T Consensus 147 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~---g~i~~-L~~l-l~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 147 LSSPNEQILQEALWALSNIASGGNEQKQAVKEA---GALEK-LEQL-QSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT---THHHH-HHHG-GGCSCHHHHHHHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHC---CCHHH-HHHH-HhCCCHHHHHHHHHHHHHHhc
Confidence 334577888999998765555457777777777 44554 4455 578999999999999998874
No 8
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=66.11 E-value=19 Score=31.85 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=50.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 221 IDLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 221 l~~eD~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
+..+|..+..+|+..|......+++....+.+. .-++.++ .+ |.++++.||..++..|..++..
T Consensus 21 L~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~---g~i~~L~-~l-L~~~~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 21 LNSPDQQELQSALRKLSQIASGGNEQIQAVIDA---GALPALV-QL-LSSPNEQILQEALWALSNIASG 84 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT---THHHHHH-HH-TTCSCHHHHHHHHHHHHHHTTS
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc---CCHHHHH-HH-HcCCCHHHHHHHHHHHHHHhcC
Confidence 566788899999999864444568888888887 5555554 55 5888999999999999999864
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=65.58 E-value=1.3e+02 Score=31.14 Aligned_cols=60 Identities=15% Similarity=-0.075 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 225 DILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 225 D~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
+..|=.+|.+.|.-.-..+++....+.+. .-++.|+ .+ |.++++.||+.++..|..|+..
T Consensus 114 ~~~lq~~Aa~aL~nias~~~e~~~~vv~~---GaIp~Lv-~l-L~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 114 CSPIQFESAWALTNIASGTSEQTKAVVDG---GAIPAFI-SL-LASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHT---THHHHHH-HH-TTCSCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHC---CCHHHHH-HH-HcCCCHHHHHHHHHHHHHHHhC
Confidence 35566678887754334467777888877 6666665 44 5899999999999999999875
No 10
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=64.72 E-value=1.1e+02 Score=29.96 Aligned_cols=63 Identities=8% Similarity=-0.165 Sum_probs=45.1
Q ss_pred chhHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 223 LDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 223 ~eD~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
.+|..|.+.|+..|.......++..+.+... .-++.+ ..+|-.++++.||+.++..|..+|..
T Consensus 118 ~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L-~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 118 SEFEDVQEQAVWALGNIAGDSTMCRDYVLDC---NILPPL-LQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT---TCHHHH-HHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHccCCHHHHHHHHHC---CCHHHH-HHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 3567888888888764444456677777766 444444 45544468999999999999999965
No 11
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=63.02 E-value=27 Score=34.45 Aligned_cols=111 Identities=14% Similarity=-0.019 Sum_probs=66.2
Q ss_pred chhHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcccccccchhHHhHH
Q psy15877 223 LDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTLSYAYASNAEQACL 302 (517)
Q Consensus 223 ~eD~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~s~s~~~~~~~~pl 302 (517)
..|..+-.+|.++|.......++....+.+. ..+.. |..+ |.+++..||..++..|..|++.... .........
T Consensus 178 ~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~---g~i~~-Lv~L-L~~~d~~v~~~al~aL~~l~~~~~~-~~~~~~~~~ 251 (296)
T 1xqr_A 178 QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM---GMVQQ-LVAL-VRTEHSPFHEHVLGALCSLVTDFPQ-GVRECREPE 251 (296)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT---THHHH-HHHH-HTSCCSTHHHHHHHHHHHHHTTCHH-HHHHHHCGG
T ss_pred CCCHHHHHHHHHHHHHHHhCChHHHHHHHHc---CCHHH-HHHH-HcCCChhHHHHHHHHHHHHHhCChh-HHHHHhccH
Confidence 3466777778777754444567777777777 45544 4465 6899999999999999999876110 000000010
Q ss_pred HHHHHHHHhhhhhhhhhccCCCCCHHHHHHHHHHhhhhccc
Q psy15877 303 VAFLQLLFPLLTSDALETRVYTKSAEYFQLFCRTLNFVSSS 343 (517)
Q Consensus 303 lffL~lLl~~L~~~a~e~~~~~~C~EYF~LLCrLLd~l~~s 343 (517)
..+..+|-..+.. .+. ...|+|-+++..+|++.++..
T Consensus 252 ~~l~~lL~~~~~~--lq~--~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 252 LGLEELLRHRCQL--LQQ--HEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp GCHHHHHHHHHHH--HTT--CGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHH--ccc--hHHHHHHHHHHHHHHHHHcCC
Confidence 1122222221111 111 345999999999999888743
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=60.95 E-value=1.2e+02 Score=29.60 Aligned_cols=60 Identities=12% Similarity=-0.053 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 225 DILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 225 D~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
|..+-.+|...|.......++....+... ..++.+ ..+ |.++++.||..++..|..++..
T Consensus 78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L-~~l-L~~~~~~vr~~a~~~L~~l~~~ 137 (450)
T 2jdq_A 78 NCTLQFESAWVLTNIASGNSLQTRIVIQA---GAVPIF-IEL-LSSEFEDVQEQAVWALGNIAGD 137 (450)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHT---THHHHH-HHH-TTCSCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCHHHH-HHH-HcCCCHHHHHHHHHHHHHHccC
Confidence 67778888888765444456666666666 444444 455 5889999999999999999875
No 13
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=57.00 E-value=1.2e+02 Score=27.76 Aligned_cols=64 Identities=16% Similarity=0.083 Sum_probs=43.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 221 IDLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 221 l~~eD~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
++++|...=++|+.-|...+..++.+.. . +...+-..+..+|-.+++..||..+++.|-.++..
T Consensus 24 l~s~~w~~R~~a~~~L~~l~~~~~~~~~----~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 24 LEEKKWTLRKESLEVLEKLLTDHPKLEN----G-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCSSBCC----C-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHccCCCCCC----C-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 4567888888888887655555443221 1 11344445555532499999999999999999965
No 14
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=52.10 E-value=34 Score=30.88 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHHhC-HHHHHHHHcCcccchHHHHHHHHhc--CCCChHHHHHHHHHHHHHhc
Q psy15877 224 DDILVCKEALELLTVCFLLN-NSLLKALLKEPKERLFAHFLCDTLL--LCDEKIIRACVQEQLTLSVT 288 (517)
Q Consensus 224 eD~~V~~eALeLLv~cL~l~-~~~l~sL~~~~~~~~~~~fL~dLLL--~sP~~~VR~~a~~~L~~Lc~ 288 (517)
.+..+.-.||.||-.|...| ..|...+.+. +..+.++++++. ..|...||..+.+.|..-..
T Consensus 66 ~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~---~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 66 KNFHEVMLALTVLETCVKNCGHRFHVLVASQ---DFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH---HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH---HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 56778889999999999998 6666667666 455665667764 34567899998887776544
No 15
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=50.62 E-value=40 Score=30.68 Aligned_cols=62 Identities=13% Similarity=0.001 Sum_probs=43.7
Q ss_pred chhHHHHHHHHHHHHHHHHhC-HHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q psy15877 223 LDDILVCKEALELLTVCFLLN-NSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVT 288 (517)
Q Consensus 223 ~eD~~V~~eALeLLv~cL~l~-~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~ 288 (517)
..+..+.-.||.||-.|...| ..|...+... .|-+-+++++-...++.||..+.+.|..-..
T Consensus 63 ~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~----~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 63 HKVPHVALQALTLLGACVANCGKIFHLEVCSR----DFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhH----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 346778888999999999998 4555555544 5545555666444678899998887766543
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=49.64 E-value=2.3e+02 Score=28.97 Aligned_cols=61 Identities=10% Similarity=-0.048 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 224 DDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 224 eD~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
.|..|.+.|+..|.......+...+.+... ..+..++ .+ |.++++.||+.++..|..+|..
T Consensus 185 ~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~---~~l~~L~-~l-l~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQC---NAMEPIL-GL-FNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHT---TCHHHHH-HG-GGSCCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHhCCCccchHHHHHc---CcHHHHH-HH-hccCCHHHHHHHHHHHHHHhCC
Confidence 466777888888754443446666666666 4555544 44 4668999999999999999975
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=48.51 E-value=46 Score=29.67 Aligned_cols=64 Identities=20% Similarity=0.058 Sum_probs=47.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 221 IDLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 221 l~~eD~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
+..+|..+..+|+..|......+++....+... ..++. +.++ +.++++.||+.++..|..++..
T Consensus 179 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~---~~i~~-L~~l-l~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 179 LTSTDSEVQKEAARALANIASGPTSAIKAIVDA---GGVEV-LQKL-LTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHT---THHHH-HHHG-GGCSCHHHHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC---CCHHH-HHHH-HCCCcHHHHHHHHHHHHHHHcC
Confidence 334567888888888754433467777788777 55554 4455 5789999999999999999875
No 18
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=44.87 E-value=93 Score=29.42 Aligned_cols=202 Identities=9% Similarity=-0.039 Sum_probs=100.3
Q ss_pred CCchhHHHHHHHHHHHHH-HHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcccccccchhHH
Q psy15877 221 IDLDDILVCKEALELLTV-CFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTLSYAYASNAEQ 299 (517)
Q Consensus 221 l~~eD~~V~~eALeLLv~-cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~s~s~~~~~~~ 299 (517)
+.+.|..--++|++-|.. .+.-++.+...--.. ..+-+.++..|=.+++..||..+++.|-.++..- .... -
T Consensus 25 l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~---~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l---~~~~-f 97 (249)
T 2qk1_A 25 ITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY---SNLLGIYGHIIQKDANIQAVALAAQSVELICDKL---KTPG-F 97 (249)
T ss_dssp HTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH---CTTT-S
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc---cccc-c
Confidence 556677778888887765 443333322100011 2334444455337999999999999999998641 1000 1
Q ss_pred h-H-HHHHHHHHHhhhhhhhhhccCCCCCHHHHHHHHHHhhhhccccccccCCCcccccCHHHHHHHHHHHHhccccccc
Q psy15877 300 A-C-LVAFLQLLFPLLTSDALETRVYTKSAEYFQLFCRTLNFVSSSVWIGAGSVLSTGIDVEKYLTQELAVLKRLSVGAK 377 (517)
Q Consensus 300 ~-p-llffL~lLl~~L~~~a~e~~~~~~C~EYF~LLCrLLd~l~~s~~~~~gs~~~~~iDie~LL~qeI~~L~~~~~~e~ 377 (517)
. + ..-++..++..|...... =.+.-...+-.++..+... . ....++.++..++..|.+-..
T Consensus 98 ~~~y~~~llp~ll~~l~dkk~~-----V~~aa~~al~~i~~~~~~~-~--------~~~~l~~ll~~l~~~l~~k~~--- 160 (249)
T 2qk1_A 98 SKDYVSLVFTPLLDRTKEKKPS-----VIEAIRKALLTICKYYDPL-A--------SSGRNEDMLKDILEHMKHKTP--- 160 (249)
T ss_dssp CHHHHHHHHHHHHHGGGCCCHH-----HHHHHHHHHHHHHHHSCTT-C--------TTCTTHHHHHHHHHHTTCSSH---
T ss_pred cHHHHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHHHcccc-c--------cCCcHHHHHHHHHHHHcCCCh---
Confidence 1 2 223455555543321100 0112222333333333211 0 111256788888877754211
Q ss_pred cCCCCcchHhhHHHHHHHHHhccCCc-chh--ccCCccchHHHHHhccCCCChhhhHhhhhcCCCCccCcCCCccCCHHH
Q psy15877 378 KSGQRDILLQGHLSIVKELVCFLNSE-KKM--EFGVTNGLIRDLINDYLFPTSKLMLKLEKTGEISFNEIAPAVCQSPES 454 (517)
Q Consensus 378 ~t~e~D~lL~GlLnL~k~Ll~~l~~~-Kk~--~iGs~~~LIkeLf~dfLFPas~~~~~~~~~~e~~~~d~~~PkCKS~~S 454 (517)
.+=++-+..+..++..-+.. ++. .+- +.++..|. ++|-.. .++-
T Consensus 161 ------~vk~~al~~l~~~~~~~~~~~~~l~~~l~--~~iip~l~-~~l~D~------------------------~~~V 207 (249)
T 2qk1_A 161 ------QIRMECTQLFNASMKEEKDGYSTLQRYLK--DEVVPIVI-QIVNDT------------------------QPAI 207 (249)
T ss_dssp ------HHHHHHHHHHHHHHHHCCSCSHHHHHHHT--TTHHHHHH-HHHTCS------------------------SHHH
T ss_pred ------HHHHHHHHHHHHHHHHcCCcchhHHHHHH--HHHHHHHH-HHhcCC------------------------CHHH
Confidence 24456666666666543321 110 010 01444443 233221 3589
Q ss_pred HHHHHHHHHHHhhCCHH-HHHHHHHH
Q psy15877 455 ISAGFSLLIGLCTGSVP-NLKLLVAM 479 (517)
Q Consensus 455 R~AAfdLLveL~k~c~~-Nl~~Lle~ 479 (517)
|.+|++.|..+++---+ .+.-.+..
T Consensus 208 R~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 208 RTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp HHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99999999999854322 24444443
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=44.63 E-value=2.7e+02 Score=28.31 Aligned_cols=63 Identities=11% Similarity=-0.145 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 223 LDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 223 ~eD~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
.+|..|.+.|+..|.......+...+.+... ..++.++ .+|..++++.||+.++..|..+|..
T Consensus 171 ~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~---g~l~~Ll-~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 171 SSSDDVREQAVWALGNVAGDSPKCRDLVLAN---GALLPLL-AQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHT---TCHHHHH-HTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHC---CcHHHHH-HHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 3466777888888754444456667777766 4555544 5555789999999999999999976
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=43.61 E-value=50 Score=29.86 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=46.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHh-CHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 221 IDLDDILVCKEALELLTVCFLL-NNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 221 l~~eD~~V~~eALeLLv~cL~l-~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
+..+|..+..+|+..|. .+.. +++....+.+. .-++.+ ..+ |.++++.||..++..|..++..
T Consensus 63 L~~~~~~v~~~a~~~L~-~l~~~~~~~~~~i~~~---g~i~~L-~~l-L~~~~~~v~~~a~~~L~~l~~~ 126 (252)
T 4db8_A 63 LSSPNEQILQEALWALS-NIASGGNEQIQAVIDA---GALPAL-VQL-LSSPNEQILQEALWALSNIASG 126 (252)
T ss_dssp GGCSCHHHHHHHHHHHH-HHTTSCHHHHHHHHHT---THHHHH-HHG-GGCSCHHHHHHHHHHHHHHTTS
T ss_pred HcCCCHHHHHHHHHHHH-HHhcCCHHHHHHHHHc---CCHHHH-HHH-HcCCCHHHHHHHHHHHHHhhcC
Confidence 33445778888888875 4444 67888888877 555554 455 5789999999999999999865
No 21
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=43.60 E-value=56 Score=32.15 Aligned_cols=65 Identities=12% Similarity=0.037 Sum_probs=51.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 221 IDLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 221 l~~eD~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
+...|..|...|.+.|..+...++...+.+.+. ..++.++ .+|-.++++.||+.++..|-.+|..
T Consensus 91 L~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~---g~l~~Ll-~LL~~~~~~~v~~~A~~ALsnl~~~ 155 (296)
T 1xqr_A 91 LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL---GALRKLL-RLLDRDACDTVRVKALFAISCLVRE 155 (296)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT---THHHHHH-HHHHHCSCHHHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC---CCHHHHH-HHHccCCCHHHHHHHHHHHHHHHcC
Confidence 455678899999999877766778888888888 5666655 5554467899999999999999865
No 22
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=37.09 E-value=66 Score=28.37 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHhCHH-HHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q psy15877 224 DDILVCKEALELLTVCFLLNNS-LLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVT 288 (517)
Q Consensus 224 eD~~V~~eALeLLv~cL~l~~~-~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~ 288 (517)
.+.-+.-.||.||-.|...|.. |...+.+. .|-+-++.++ ..+++.||..+.+.|..-..
T Consensus 54 ~n~~~ql~AL~LLe~~vkNcG~~f~~evas~----~Fl~el~~l~-~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 54 KDPHVAMQALTLLGACVSNCGKIFHLEVCSR----DFASEVSNVL-NKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCHHHHHHHSSH----HHHHHHHHHH-HHSCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCHHHHHHHhhH----HHHHHHHHHh-ccCCHHHHHHHHHHHHHHHH
Confidence 4667888899999999999854 44444443 4544455554 56789999999998887654
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=35.48 E-value=3.7e+02 Score=27.34 Aligned_cols=60 Identities=13% Similarity=-0.029 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 225 DILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 225 D~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
|..|..+|...|.......++....+... ..+..++ .+ |.++++.||..++..|..++..
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~---g~i~~Lv-~l-L~~~~~~vr~~A~~aL~~l~~~ 203 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDA---DAVPLFI-QL-LYTGSVEVKEQAIWALGNVAGD 203 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHT---TCHHHHH-HH-HHHCCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHC---CCHHHHH-HH-HcCCCHHHHHHHHHHHHHHhCC
Confidence 67788888888754444456777777766 4555544 44 4689999999999999999865
No 24
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=34.39 E-value=2.2e+02 Score=32.33 Aligned_cols=55 Identities=5% Similarity=0.034 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 232 ALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 232 ALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
++..+..+|-..|++...+|-. +.+...+.+.+...++..+...+-+.|-..|-.
T Consensus 232 ~~~~l~~lfPi~p~~~s~lfl~---e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~ 286 (778)
T 3opb_A 232 IVKTLSELYPSLTTLCSEIFLT---KGLSKLFKKRVFEEQDLQFTKELLRLLSSACID 286 (778)
T ss_dssp HHHHHHHHTTTTHHHHHHHHST---TTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhcCCHHHHHHHHcc---ccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC
Confidence 4555666788889999999999 888888888887778888888888888888765
No 25
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=33.55 E-value=1.2e+02 Score=27.27 Aligned_cols=64 Identities=14% Similarity=0.042 Sum_probs=46.3
Q ss_pred CchhHHHHHHHHHHHHHHHHhCH-HHHHHHHcCcccchHHHHHHHHhcC-----CCChHHHHHHHHHHHHHhcc
Q psy15877 222 DLDDILVCKEALELLTVCFLLNN-SLLKALLKEPKERLFAHFLCDTLLL-----CDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 222 ~~eD~~V~~eALeLLv~cL~l~~-~~l~sL~~~~~~~~~~~fL~dLLL~-----sP~~~VR~~a~~~L~~Lc~~ 289 (517)
...+.-+.-.||.||-.|...|. .|...+.+. .|-+=|++++-. .+.+.||..+.+.|..-...
T Consensus 58 ~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~----~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 58 QSPQEWEAIQALTVLETCMKSCGKRFHDEVGKF----RFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSH----HHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhH----HHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 34578888999999999999984 555666655 444445666542 36789999998888877643
No 26
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=33.18 E-value=1.4e+02 Score=27.33 Aligned_cols=62 Identities=16% Similarity=0.046 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHHHHHHHhCH-HHHHHHHcCcccchHHHHHHHHhcC-----CCChHHHHHHHHHHHHHhc
Q psy15877 223 LDDILVCKEALELLTVCFLLNN-SLLKALLKEPKERLFAHFLCDTLLL-----CDEKIIRACVQEQLTLSVT 288 (517)
Q Consensus 223 ~eD~~V~~eALeLLv~cL~l~~-~~l~sL~~~~~~~~~~~fL~dLLL~-----sP~~~VR~~a~~~L~~Lc~ 288 (517)
..+.-+.-.||.||-.|...|. .|...+.+. .|-+-|++++-. ...+.||..+.+.|..-..
T Consensus 61 ~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~----~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 61 SPQEWEALQALTVLEACMKNCGRRFHNEVGKF----RFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH----HHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH----HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567888999999999999985 455555554 554446666532 2357899998888776654
No 27
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=30.64 E-value=85 Score=29.84 Aligned_cols=64 Identities=14% Similarity=-0.003 Sum_probs=45.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHhCHH-HHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q psy15877 221 IDLDDILVCKEALELLTVCFLLNNS-LLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVT 288 (517)
Q Consensus 221 l~~eD~~V~~eALeLLv~cL~l~~~-~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~ 288 (517)
+...+.-+.-.||.||-.|...+.. |...+.+. .|-+-|+.++=..+++.||..+.+.|..-..
T Consensus 54 l~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~----~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 54 VNDKNPHVALYALEVMESVVKNCGQTVHDEVANK----QTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccH----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3356778899999999988888754 55555444 5555666666445678899998888877654
No 28
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.59 E-value=1.3e+02 Score=28.30 Aligned_cols=64 Identities=8% Similarity=-0.019 Sum_probs=44.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHhCHH-HHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhc
Q psy15877 221 IDLDDILVCKEALELLTVCFLLNNS-LLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVT 288 (517)
Q Consensus 221 l~~eD~~V~~eALeLLv~cL~l~~~-~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~ 288 (517)
+...+..+.-.||.||-.|+..+.. |...+.+. .|-+-++.++=..+++.||..+.+.|..-..
T Consensus 51 l~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~----~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 51 MNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTK----ENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhH----HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3446788899999999988888855 44544444 4555555665445678888888777665543
No 29
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=29.51 E-value=1.4e+02 Score=26.64 Aligned_cols=63 Identities=17% Similarity=0.066 Sum_probs=44.5
Q ss_pred CchhHHHHHHHHHHHHHHHHhC-HHHHHHHHcCcccchHHHHHHHHhcC-----CCChHHHHHHHHHHHHHhc
Q psy15877 222 DLDDILVCKEALELLTVCFLLN-NSLLKALLKEPKERLFAHFLCDTLLL-----CDEKIIRACVQEQLTLSVT 288 (517)
Q Consensus 222 ~~eD~~V~~eALeLLv~cL~l~-~~~l~sL~~~~~~~~~~~fL~dLLL~-----sP~~~VR~~a~~~L~~Lc~ 288 (517)
...+.-+.-.||.||-.|...| ..|...+... .|-+-+++++-. ...+.||..+.+.|..-..
T Consensus 48 ~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~----~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 48 QSPQEKEALYALTVLEMCMNHCGEKFHSEVAKF----RFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSH----HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH----HHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3457888999999999999998 4566666555 444445555432 1468999998888876654
No 30
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=27.91 E-value=6.2e+02 Score=27.53 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q psy15877 451 SPESISAGFSLLIGLCTGSVPNLKLLVAM 479 (517)
Q Consensus 451 S~~SR~AAfdLLveL~k~c~~Nl~~Lle~ 479 (517)
.+.-|..||.+|-++++.+...+...+..
T Consensus 642 ~~~vr~~a~~~l~~l~~~~~~~~~~~l~~ 670 (852)
T 4fdd_A 642 MPEVRQSSFALLGDLTKACFQHVKPCIAD 670 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTGGGHHH
T ss_pred ChhHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45789999999999999998876554443
No 31
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=27.53 E-value=1.2e+02 Score=30.43 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=47.5
Q ss_pred CchhHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 222 DLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 222 ~~eD~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
..+|..+.+.|...|. .+....+....+... +..-..++++|-.++++.+|+.++..|..++..
T Consensus 27 ~~~~~~v~~~A~~~L~-~l~~~~~~~~~~~~~---~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 27 NDEDQVVVNKAAVMVH-QLSKKEASRHAIMRS---PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp TCSCHHHHHHHHHHHH-HHHTSHHHHHHHHTC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHH-HHHcCCccHHHHHhC---cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 3567788888888863 566666666666666 555566667765667899999999999999764
No 32
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=26.56 E-value=1.8e+02 Score=27.62 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=44.2
Q ss_pred CCchhH--HHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcc
Q psy15877 221 IDLDDI--LVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTL 289 (517)
Q Consensus 221 l~~eD~--~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~ 289 (517)
+.++|. .+-.+|...|......++.....+... ..++.++ ++ |.++++.||..++..|..|+..
T Consensus 17 L~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~---G~Ip~LV-~l-L~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 17 LEADHMLPSRISAAATFIQHECFQKSEARKRVNQL---RGILKLL-QL-LKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT---THHHHHH-HG-GGCCCHHHHHHHHHHHHHHHTT
T ss_pred hCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc---CCHHHHH-HH-HcCCCHHHHHHHHHHHHHHHhC
Confidence 444554 555556665543233457777777777 6665554 55 4889999999999999999875
No 33
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=24.81 E-value=6.2e+02 Score=26.53 Aligned_cols=181 Identities=11% Similarity=0.047 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHhCHHHHHHHHcCcccchHHHHHHHHh--cCCCChHHHHHHHHHHHHHhcccccccchhH
Q psy15877 221 IDLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTL--LLCDEKIIRACVQEQLTLSVTLSYAYASNAE 298 (517)
Q Consensus 221 l~~eD~~V~~eALeLLv~cL~l~~~~l~sL~~~~~~~~~~~fL~dLL--L~sP~~~VR~~a~~~L~~Lc~~s~s~~~~~~ 298 (517)
...+|..|-.+|+++|. .+.+. .++..++..|+ +.+.+..+|++++..|..+|..
T Consensus 327 ~~~d~~~Ir~~al~~L~-----------~l~~~---~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~--------- 383 (591)
T 2vgl_B 327 KYNDPIYVKLEKLDIMI-----------RLASQ---ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK--------- 383 (591)
T ss_dssp CTTSCHHHHHHHHHHHH-----------HTCCS---STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT---------
T ss_pred ccCChHHHHHHHHHHHH-----------HHCCh---hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---------
Q ss_pred HhH-HHHHHHHHHhhhhhhhhhccCCCCCHHHHHHHHHHhhhhccccccccCCCcccccCHHHHHHHHHHHHhccccccc
Q psy15877 299 QAC-LVAFLQLLFPLLTSDALETRVYTKSAEYFQLFCRTLNFVSSSVWIGAGSVLSTGIDVEKYLTQELAVLKRLSVGAK 377 (517)
Q Consensus 299 ~~p-llffL~lLl~~L~~~a~e~~~~~~C~EYF~LLCrLLd~l~~s~~~~~gs~~~~~iDie~LL~qeI~~L~~~~~~e~ 377 (517)
..+ ....+..|+++|......- ..+-...+..++........ ..+..+++.|....
T Consensus 384 ~~~~~~~~v~~Ll~ll~~~~~~v-----~~e~i~~l~~ii~~~p~~~~--------------~~v~~L~~~l~~~~---- 440 (591)
T 2vgl_B 384 VEQSAERCVSTLLDLIQTKVNYV-----VQEAIVVIRDIFRKYPNKYE--------------SIIATLCENLDSLD---- 440 (591)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHH-----HHHHHHHHHHHHHHSCSSCC--------------TTHHHHHHTTTTCC----
T ss_pred ChhHHHHHHHHHHHHHcccchHH-----HHHHHHHHHHHHHHCcchHH--------------HHHHHHHHHHHhcc----
Q ss_pred cCCCCcchHhhHHHHHHHHHhccCCcchhccCCccchHHHHHhccCCCChhhhHhhhhcCCCCccCcCCCccCCHHHHHH
Q psy15877 378 KSGQRDILLQGHLSIVKELVCFLNSEKKMEFGVTNGLIRDLINDYLFPTSKLMLKLEKTGEISFNEIAPAVCQSPESISA 457 (517)
Q Consensus 378 ~t~e~D~lL~GlLnL~k~Ll~~l~~~Kk~~iGs~~~LIkeLf~dfLFPas~~~~~~~~~~e~~~~d~~~PkCKS~~SR~A 457 (517)
+..+....+-++.+.-........ +++.+++.|.-..+ ..|.+
T Consensus 441 ----~~~~~~~~~wilGey~~~~~~~~~--------~l~~l~~~~~~~~~-------------------------~vr~~ 483 (591)
T 2vgl_B 441 ----EPDARAAMIWIVGEYAERIDNADE--------LLESFLEGFHDEST-------------------------QVQLT 483 (591)
T ss_dssp ----SHHHHHHHHHHHHTTCTTCTTHHH--------HHHHHSTTCSSSCH-------------------------HHHHH
T ss_pred ----CHHHHHHHHHHHHcccccccCHHH--------HHHHHHHhhccCCH-------------------------HHHHH
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcc
Q psy15877 458 GFSLLIGLCTGSVPNLKLLVAMLTDMF 484 (517)
Q Consensus 458 AfdLLveL~k~c~~Nl~~Lle~L~emh 484 (517)
+...++.+...+++....++..+.+.+
T Consensus 484 ~l~a~~Kl~~~~p~~~~~~i~~ll~~~ 510 (591)
T 2vgl_B 484 LLTAIVKLFLKKPSETQELVQQVLSLA 510 (591)
T ss_dssp HHHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHh
No 34
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=24.74 E-value=3.2e+02 Score=25.53 Aligned_cols=143 Identities=10% Similarity=0.111 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHHhC------HHHHHHHHcCcccchHHHHHHHHhcCCCChHHHHHHHHHHHHHhcccccccchhH
Q psy15877 225 DILVCKEALELLTVCFLLN------NSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLTLSVTLSYAYASNAE 298 (517)
Q Consensus 225 D~~V~~eALeLLv~cL~l~------~~~l~sL~~~~~~~~~~~fL~dLLL~sP~~~VR~~a~~~L~~Lc~~s~s~~~~~~ 298 (517)
...|+..|+++|...+... ......+.. ..+..++.. .|.++.+.+|..+.+.+..++....
T Consensus 68 N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~----~~l~~lveK-~l~~~k~~~~~~a~~~l~~~~~~~~------- 135 (278)
T 4ffb_C 68 NVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS----TWTPLLVEK-GLTSSRATTKTQSMSCILSLCGLDT------- 135 (278)
T ss_dssp SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH----HHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHTSS-------
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH----HHHHHHHHH-HhcCccHHHHHHHHHHHHHHHHhcC-------
Confidence 3678888888875433321 111111111 122333323 3689999999999999988875411
Q ss_pred HhHHHHHHHHHHhhhhhhhhhccCCCCCHHHHHHHHHHhhhhccccccccCCCcccccCHHHHHHHHHHHHhcccccccc
Q psy15877 299 QACLVAFLQLLFPLLTSDALETRVYTKSAEYFQLFCRTLNFVSSSVWIGAGSVLSTGIDVEKYLTQELAVLKRLSVGAKK 378 (517)
Q Consensus 299 ~~pllffL~lLl~~L~~~a~e~~~~~~C~EYF~LLCrLLd~l~~s~~~~~gs~~~~~iDie~LL~qeI~~L~~~~~~e~~ 378 (517)
+...++..++..|.... +..=.+-...+.++|...... .++....+..++..|...-.
T Consensus 136 --~~~~~~e~l~~~l~~Kn-----pkv~~~~l~~l~~~l~~fg~~-----------~~~~k~~l~~i~~~l~k~l~---- 193 (278)
T 4ffb_C 136 --SITQSVELVIPFFEKKL-----PKLIAAAANCVYELMAAFGLT-----------NVNVQTFLPELLKHVPQLAG---- 193 (278)
T ss_dssp --SSHHHHHHHGGGGGCSC-----HHHHHHHHHHHHHHHHHHTTT-----------TCCHHHHHHHHGGGHHHHHT----
T ss_pred --cHHHHHHHHHHHHhccC-----HHHHHHHHHHHHHHHHHhCCC-----------cCCchhHHHHHHHHHHHHHh----
Confidence 11234455554443322 222234455566666554322 23444444433333322111
Q ss_pred CCCCcchHhhHHHHHHHHHhccCC
Q psy15877 379 SGQRDILLQGHLSIVKELVCFLNS 402 (517)
Q Consensus 379 t~e~D~lL~GlLnL~k~Ll~~l~~ 402 (517)
+. +-.+=..-.+++-+|.++++.
T Consensus 194 d~-~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 194 HG-DRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp CS-SHHHHHHHHHHHHHHHTC---
T ss_pred CC-cHHHHHHHHHHHHHHHHHhCc
Confidence 11 223445566777778888764
Done!