RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15877
(517 letters)
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 50.9 bits (121), Expect = 1e-06
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 8/155 (5%)
Query: 8 TTGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKP--GSTS 65
T+ S N ++ P T+PN T+ TS + T+ + ++ T+ P G+TS
Sbjct: 489 TSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTS 548
Query: 66 PNVTTAP----VSPNITTGPNVATSSPSDITTHSLVLSISPNLDTV--LSLIKNTSNVKP 119
T+P SP T V TS+PS +T+ I ++S+ P
Sbjct: 549 VPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTP 608
Query: 120 GSTSPNVNTAPTSPNITTGPNIATSSPSDITTHSL 154
S S + TS + T G NI +PS +T +
Sbjct: 609 RSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHV 643
Score = 47.9 bits (113), Expect = 1e-05
Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 3/140 (2%)
Query: 8 TTGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGSTSPN 67
T A P T ST P T+ + TS+ + T+ + ++ N ++ TS
Sbjct: 463 TVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDT 522
Query: 68 VTTAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKPGSTSPNVN 127
+P + ATS P+ T+ S T S + NT+ S +
Sbjct: 523 PNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQV---TEESPVNNTNTPVVTSAPSVLT 579
Query: 128 TAPTSPNITTGPNIATSSPS 147
+A T+ TG + + P
Sbjct: 580 SAVTTGQHGTGSSPTSQQPG 599
Score = 43.6 bits (102), Expect = 2e-04
Identities = 36/150 (24%), Positives = 49/150 (32%), Gaps = 21/150 (14%)
Query: 24 GSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGSTSPNVTTAPVSPNITTGPNV 83
P+ TT S P T ++ S P S +P TT+ P T+ P
Sbjct: 439 VHVEPHKTTAVPTTPSLPPASTGPTV-------STADPTSGTPTGTTSSTLPEDTS-PTS 490
Query: 84 ATSSPSDITTHSLVLSISPNL-----------DTVLSLIKNTSNVKPGSTSPNVNTAPTS 132
T+S + T +PN S V +TSP T TS
Sbjct: 491 RTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGT--TS 548
Query: 133 PNITTGPNIATSSPSDITTHSLVLSISPNL 162
T P + SP + T +V S L
Sbjct: 549 VPNATSPQVTEESPVNNTNTPVVTSAPSVL 578
Score = 40.9 bits (95), Expect = 0.002
Identities = 39/151 (25%), Positives = 54/151 (35%), Gaps = 15/151 (9%)
Query: 3 TGPNITTGPA----SPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSN 58
T T P SP NT+ S +T+ T I ++S+
Sbjct: 547 TSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQP-GIPSSSH 605
Query: 59 VKPGSTSPNVTTAPVSPNITTGPNVATSSPSDITTHSL-VLSISPNLDTVLSLIKNTSNV 117
P S S + T S + T G N+ +PS +T + LS P T S
Sbjct: 606 STPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGT----TSQVSGP 661
Query: 118 KPGSTSPNVNTAPTSPNITTG-PNIATSSPS 147
STS P ++T G PN +SPS
Sbjct: 662 GNSSTSRY----PGEVHVTEGMPNPNATSPS 688
Score = 39.8 bits (92), Expect = 0.004
Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 14/148 (9%)
Query: 5 PNITTGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGST 64
P+ TT + + S T ++ S + + S + +
Sbjct: 443 PHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTS----ATPN 498
Query: 65 SPNVTTAPVSPNIT------TGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVK 118
+ + T A +PN T T +SP+ I + SP T + + N ++ +
Sbjct: 499 ATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGT--TSVPNATSPQ 556
Query: 119 PGSTSPNVNTAPTSPNITTGPNIATSSP 146
SP NT +P +T+ P++ TS+
Sbjct: 557 VTEESPVNNT--NTPVVTSAPSVLTSAV 582
Score = 37.1 bits (85), Expect = 0.022
Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 13/166 (7%)
Query: 2 NTGPNITTGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKP 61
+ T ++ G+TS T P + SP + T +V S +
Sbjct: 523 PNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAV 582
Query: 62 GSTSPNVTTAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKPGS 121
+ ++P S P+ + S+P +T + L S + +N + P
Sbjct: 583 TTGQHGTGSSPTS-QQPGIPSSSHSTPRSNSTSTTPLLTS----AHPTGGENITEETPSV 637
Query: 122 TSPN-VNTAPTSPNITT-----GPNIATSSPSDITTHSLVLSISPN 161
S V+T P T GP +++S H V PN
Sbjct: 638 PSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRYPGEVH--VTEGMPN 681
Score = 32.8 bits (74), Expect = 0.44
Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 13/172 (7%)
Query: 2 NTGPNITTGP--ASPNMNTSNVKPGSTSPNITTGPNIA-TSSPSDITTHSLVLSISN--- 55
NT PN+T A N+ S+ K P S + + ++++N
Sbjct: 340 NTAPNVTVTAFWAWGNVTQSDFKCKWVLATHGQNPEGCERSLGFFNSNRTFEVTVANPVA 399
Query: 56 -TSNVKPGSTSPNVTTAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNT 114
+ T+ N TT P+ S T + + + T SL +
Sbjct: 400 DAKTLIITRTATNATTTTHKVVFHKAPDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPAS 459
Query: 115 -----SNVKPGSTSPNVNTAPTSPNITTGPNIATSSPSDITTHSLVLSISPN 161
S P S +P T+ T P T+ P T+S + T +PN
Sbjct: 460 TGPTVSTADPTSGTPTGTTSSTLPEDTS-PTSRTTSATPNATSPTPAVTTPN 510
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 41.4 bits (97), Expect = 0.001
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 23 PGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGSTSPNVTTAPVSPNITTGPN 82
P S + TT A S+ S + + V+ + + ++SP+ T SP T+
Sbjct: 777 PQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTT-SPTQTSTST 835
Query: 83 VATSSPSDITTHSLVLSI 100
T+SPS TT +
Sbjct: 836 TTTTSPSQTTTGGGICGP 853
Score = 38.7 bits (90), Expect = 0.009
Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 22/128 (17%)
Query: 31 TTGPNIATSSPSDITTHSLVLSISNTSNVKPGSTSPNVTTAPVSPNITTGPNVATSSPSD 90
T + P+ T S+ S + T+ V P S + TT S T + T+S
Sbjct: 748 TKRVKVRIMDPASGTGTSITTSGTFTAEV-PQSPTKTETTLSYSAYSNTSILIETTSVV- 805
Query: 91 ITTHSLVLSISPNLDTVLSLIKNTSNVKPGSTSPNVNTAPTSPNITTGPNIATSSPSDIT 150
+ K + + ++SP+ TSP T+ T+SPS T
Sbjct: 806 -------------------ITKTVTQTQTTTSSPSPTQT-TSPTQTSTSTTTTTSPSQTT 845
Query: 151 THSLVLSI 158
T +
Sbjct: 846 TGGGICGP 853
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 40.7 bits (95), Expect = 0.002
Identities = 34/175 (19%), Positives = 52/175 (29%), Gaps = 14/175 (8%)
Query: 3 TGPNITTGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISN--TSNVK 60
+ +T P N+ S S N T P + S HS + +N
Sbjct: 221 SKGLTSTKELVPVQNSGGNHSLSKSSNSQT-PELEYSEKGKDHHHSHNHQHHSIGINNHH 279
Query: 61 PGSTSPNVTTAPV----------SPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSL 110
+ T V S + T G TS+ S S+ S +
Sbjct: 280 SKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRN 339
Query: 111 IKNTSNVKPGSTSPNVNTAPTSPNITTGPNIATSSPSDITTHSLVLSISPNLDTV 165
N+S S + +V ++ S N + A+ S S S TV
Sbjct: 340 KSNSSPKSHSSANGSVPSSSVSDN-ESKQKRASKSSSGARDSKKDASGMSANGTV 393
>gnl|CDD|215964 pfam00513, Late_protein_L2, Late Protein L2.
Length = 466
Score = 36.1 bits (84), Expect = 0.046
Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 23 PGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGSTSPNVTTAPVSPNITTGPN 82
P + S T S+V + +S ++ G+ P + ITT
Sbjct: 75 VRVVGTGTPVRPPVVVESTVGPTDPSIVSLVEESSIIESGAPIPPIPGDGSGFPITTS-- 132
Query: 83 VATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKPGSTSPNVNTAPTSPNITTGPNIA 142
+T++P+ +L ++P TV +N P T P+V P ++
Sbjct: 133 -STTTPA-------ILDVTPTTRTVHVSRTQYNN--PLFTDPSVLQPP--QPAEVSGHVL 180
Query: 143 TSSPSDITTHSL 154
S + I THS
Sbjct: 181 VSGQT-IGTHSY 191
Score = 30.7 bits (70), Expect = 2.0
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 30/109 (27%)
Query: 61 PGSTSPN---VTTAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNV 117
P T P T PV P + V + PS ++SL++ +S +
Sbjct: 69 PLGTRPVRVVGTGTPVRPPVVVESTVGPTDPS-----------------IVSLVEESSII 111
Query: 118 KPGSTSPNVNTAPTSPNITTGPNIATSSPSDITTHSLVLSISPNLDTVL 166
+ G+ P + + ITT +T++P+ +L ++P TV
Sbjct: 112 ESGAPIPPIPGDGSGFPITTS---STTTPA-------ILDVTPTTRTVH 150
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 35.8 bits (83), Expect = 0.050
Identities = 17/97 (17%), Positives = 34/97 (35%)
Query: 5 PNITTGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGST 64
P T+ P + P T+P + P +AT+ + + + +NV +T
Sbjct: 163 PLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAAT 222
Query: 65 SPNVTTAPVSPNITTGPNVATSSPSDITTHSLVLSIS 101
A + A S ++LV++ +
Sbjct: 223 PAPAAPATPDGAAPLPTDQAGVSTPAADPNALVMNFT 259
Score = 31.2 bits (71), Expect = 1.3
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 72 PVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKPGSTSPNVNTAPT 131
P+ + TT P + + + T + N + NV+TA T
Sbjct: 163 PLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAAT 222
Query: 132 S-PNITTGPNIATSSPSD--------ITTHSLVLSIS 159
P P+ A P+D ++LV++ +
Sbjct: 223 PAPAAPATPDGAAPLPTDQAGVSTPAADPNALVMNFT 259
>gnl|CDD|206605 pfam14439, Bd3614-deam, Bd3614-like deaminase. A member of the
nucleic acid/nucleotide deaminase superfamily prototyped
by Bdellovibrio Bd3614. They are typified by a distinct
N-terminal globular domain. The Bdellovibrio version
occurs in a predicted operon with a 23S rRNA
G2445-modifying methylase suggesting that it might be
involved in RNA editing.
Length = 113
Score = 31.0 bits (70), Expect = 0.51
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 271 DEKIIRACVQEQLTLSVTLSYAYASNAEQACLVAFLQLLFPLL 313
D ++ A V + L A +NA+ L A + LL PLL
Sbjct: 7 DRDVVAALVSPR---GQLLDAAVNTNAKNKTLHAEVNLLQPLL 46
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 31.9 bits (72), Expect = 0.64
Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 27/122 (22%)
Query: 42 SDITTHSLVLSISNTSNVKPGSTSPNVTTAP---VSPNITTGPNVATSSPSDITTHSLVL 98
+ I SL L + T + + + N TT V +T P+ +P
Sbjct: 4 TTIAKTSLALGLLTTGVITTTTQAANATTPSSTKVEAPQSTPPSTKVEAPQS-------- 55
Query: 99 SISPNLDTVLSLIKNTSNVKPGSTSPNVNTAPTSPNITTGPNIATSSPSDITTHSLVLSI 158
PN T S V +PN TT + +P TT + I
Sbjct: 56 --KPNATT--------------PPSTKVEAPQQTPNATTPSSTKVETPQSPTTKQVPTEI 99
Query: 159 SP 160
+P
Sbjct: 100 NP 101
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 32.3 bits (73), Expect = 0.65
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 6/124 (4%)
Query: 18 TSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGSTSPNVTTAPVS--- 74
T+N + ST P T G +++ S + P +TS + +T
Sbjct: 208 TANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEH 267
Query: 75 -PNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKPGSTSPNVNTAPTSP 133
T P ATS+ + + + +T + T+ + GS+ P+ +
Sbjct: 268 TQRRKTPP--ATSNRRSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQA 325
Query: 134 NITT 137
N TT
Sbjct: 326 NPTT 329
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 32.2 bits (73), Expect = 0.85
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 5 PNITTGPASPNMNTSNVKPGSTSPNITTGPNIATSS-----------PSDITTHSLVLSI 53
P T GP +P P + P T P +A+ S P+D L +
Sbjct: 2760 PPTTAGPPAP---APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAA 2816
Query: 54 SNTSNVKPGSTSPNVTTA-PVSPNITTGPNVATSSP 88
+ P P T+A P +P GP +
Sbjct: 2817 ALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 32.0 bits (72), Expect = 0.86
Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 25/166 (15%)
Query: 20 NVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNV--------------KPGSTS 65
N PG+ T P I S +I + I + + PGST+
Sbjct: 511 NTGPGAAITKRVTWPGIKKLSDEEILKFTPAQYIQGDAWIPGKGVPYIPGLFAGNPGSTN 570
Query: 66 PNVTTAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKPGSTSP- 124
T + S N T ++ SPS + S SP + S S + STSP
Sbjct: 571 STPTGSAASSNTTF----SSDSPSTVVAP----STSPPAGHLGSPPATPSKIVSPSTSPP 622
Query: 125 --NVNTAPTSPNITTGPNIATSSPSDITTHSLVLSISPNLDTVLSL 168
++ + T+P+ S+ + S+ ++ + + +++S+
Sbjct: 623 ASHLGSPSTTPSSPESSIKVASTETASPESSIKVASTESSVSMVSM 668
>gnl|CDD|152349 pfam11914, DUF3432, Domain of unknown function (DUF3432). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is about 100
amino acids in length. This domain is found associated
with pfam00096. This domain has two conserved sequence
motifs: YPSPV and PSP.
Length = 100
Score = 29.3 bits (65), Expect = 1.4
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 12 ASPNMNTSNVKPGSTSPNITTGPN-IATSSPSDI-TTHSLVLSISNTSNVKPGSTSPNVT 69
A+P S +S +++ P+ IATS PS + T++S +S S V SP++
Sbjct: 4 AAPVSTASPNISIYSSSPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIA 63
Query: 70 TAPVSPNITTGPNVATSSPSDITTHS 95
T S + T VATS PS + T+S
Sbjct: 64 TTYPSVSPTFQTQVATSFPSSVVTNS 89
>gnl|CDD|241369 cd13215, PH-GRAM1_AGT26, Autophagy-related protein 26/Sterol
3-beta-glucosyltransferase Pleckstrin homology (PH)
domain, repeat 1. ATG26 (also called
UGT51/UDP-glycosyltransferase 51), a member of the
glycosyltransferase 28 family, resulting in the
biosynthesis of sterol glucoside. ATG26 in decane
metabolism and autophagy. There are 32 known
autophagy-related (ATG) proteins, 17 are components of
the core autophagic machinery essential for all
autophagy-related pathways and 15 are the additional
components required only for certain pathways or
species. The core autophagic machinery includes 1) the
ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and
ATG27), 2) the phosphatidylinositol 3-kinase complex
(ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the
ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7,
ATG8, ATG10, ATG12, and ATG16). Less is known about how
the core machinery is adapted or modulated with
additional components to accommodate the nonselective
sequestration of bulk cytosol (autophagosome formation)
or selective sequestration of specific cargos (Cvt
vesicle, pexophagosome, or bacteria-containing
autophagosome formation). The pexophagosome-specific
additions include the ATG30-ATG11-ATG17
receptor-adaptors complex, the coiled-coil protein
ATG25, and the sterol glucosyltransferase ATG26. ATG26
is necessary for the degradation of medium peroxisomes.
It contains 2 GRAM domains and a single PH domain. PH
domains are only found in eukaryotes. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. PH domains also have
diverse functions. They are often involved in targeting
proteins to the plasma membrane, but few display strong
specificity in lipid binding. Any specificity is usually
determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 130
Score = 29.8 bits (68), Expect = 1.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 382 RDILLQGHLSIVKELVCFL 400
R +LLQG++ + +CF
Sbjct: 1 RSVLLQGYMYLTSRHLCFF 19
>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC)
Pleckstrin Homology-Glucosyltransferases, Rab-like
GTPase activators and Myotubularins (PH-GRAM) domain.
The GRAMDC proteins are membrane proteins. Nothing is
known about its function. Members include: GRAMDC1A,
GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and
GRAMDC-like proteins. All of the members, except for
GRAMDC4 are included in this hierarchy. Each contains a
single PH-GRAM domain at their N-terminus. The GRAM
domain is found in glucosyltransferases, myotubularins
and other putative membrane-associated proteins. The
GRAM domain is part of a larger motif with a pleckstrin
homology (PH) domain fold.
Length = 111
Score = 29.4 bits (67), Expect = 1.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 381 QRDILLQGHLSIVKELVCF 399
QRDILLQG L I + +CF
Sbjct: 21 QRDILLQGRLYISENHICF 39
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in
the binding of extracellular matrix components and
growth factors.
Length = 207
Score = 30.1 bits (68), Expect = 1.8
Identities = 15/73 (20%), Positives = 33/73 (45%)
Query: 3 TGPNITTGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPG 62
T P +TT +SP+ +T+ + + + T+SPS+ T ++S + + G
Sbjct: 76 TPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDTEEATTTVSTETPTEGG 135
Query: 63 STSPNVTTAPVSP 75
S++ + +
Sbjct: 136 SSAATDPSKNLLE 148
>gnl|CDD|236733 PRK10672, PRK10672, rare lipoprotein A; Provisional.
Length = 361
Score = 30.4 bits (69), Expect = 2.3
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 5 PNITTGPASPNMNTSNVKPGSTSP--NITTGPNIATSSPSDITTHSLVLSISNTSNVKPG 62
P+++ G +P++ + G P N T T +P ++ L + V G
Sbjct: 198 PDLSGGMGTPSVQPAPAPQGDVLPVSNSTLKSEDPTGAPVT-SSGFLGAPTTLAPGVLEG 256
Query: 63 S--TSPNVTTAPVSPNITTGPNVATSSPS 89
S T ++AP + P A +S S
Sbjct: 257 SEPTPTAPSSAPATAPAAAAPQAAATSSS 285
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 30.6 bits (69), Expect = 2.5
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 6 NITTGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGSTS 65
I T + + P + T T +P TT + S S T+ ++
Sbjct: 30 EIVTTTPATSTEAEQTTPVES---DATEEADNTETPVAATTAAEAPSSSETAETSDPTSE 86
Query: 66 PNVTTAPVSPNITTGPNVATSSP 88
TT + +T TS P
Sbjct: 87 ATDTTTSEARTVTP-AATETSKP 108
>gnl|CDD|219865 pfam08493, AflR, Aflatoxin regulatory protein. This domain is
found in the aflatoxin regulatory protein (AflR) which
is involved in the regulation of the biosynthesis of
aflatoxin in the fungal genus Aspergillus. It occurs
together with the fungal Zn(2)-Cys(6) binuclear cluster
domain (pfam00172).
Length = 275
Score = 29.9 bits (67), Expect = 2.7
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 24 GSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGSTSPNVTTAPVSPNITTGP 81
G +PN + P I ++ ++ T+ S P S P V T P +PN T+ P
Sbjct: 1 GLETPNTASSPTIPANTTANTTSSSHP---QPPVQSGPSSIQPPVAT-PHTPNGTSSP 54
>gnl|CDD|219927 pfam08601, PAP1, Transcription factor PAP1. The transcription
factor Pap1 regulates antioxidant-gene transcription in
response to H2O2. This region is cysteine rich.
Alkylation of cysteine residues following treatment with
a cysteine alkylating agent can mask the accessibility
of the nuclear exporter Crm1, triggering nuclear
accumulation and Pap1 dependent transcriptional
expression.
Length = 344
Score = 30.3 bits (68), Expect = 2.8
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
Query: 35 NIATSSPSDITTHSLVLSISNTSNVKPGSTSPNVT-TAPVSPNITTGPNVATSSPSDITT 93
N + SSP +S ++S+ +N G TSP+ S N P+ S+ S +
Sbjct: 50 NSSVSSPVPGLLNSTESNVSSPNNNPNGYTSPSSAAMNNKSNNRAVDPSANASAASTNSP 109
Query: 94 HSLVLSISPNLDTVLSLIKNTSNVKPGSTSPNVNTAPTSPNITTGPNIATSSPS 147
+ L S + + N+S+ P S S S T+ S P
Sbjct: 110 NGLQSSATQ-----YNSNDNSSSDSPSSGSDGFTNQLLSSLGTSPEPSTESPPQ 158
Score = 28.8 bits (64), Expect = 8.3
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 4/116 (3%)
Query: 6 NITTGPASPNMNTSNVKP--GSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGS 63
N G SP+ N K + P+ S ++ + S N+S+ P S
Sbjct: 73 NNPNGYTSPSSAAMNNKSNNRAVDPSANASAASTNSPNGLQSSATQYNSNDNSSSDSPSS 132
Query: 64 TSPNVTTAPVSPNITTGPNVATSSPS--DITTHSLVLSISPNLDTVLSLIKNTSNV 117
S T +S T+ S P + + + + + + V S +T N+
Sbjct: 133 GSDGFTNQLLSSLGTSPEPSTESPPQLASVNNFAAIRNNAESNSNVPSAASSTPNI 188
>gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional.
Length = 234
Score = 29.9 bits (66), Expect = 3.0
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 7/135 (5%)
Query: 25 STSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGSTSPNVTTAPVSPNITTGPNVA 84
S+ + + N+ ++ + S +N S +++P TTA +S N TT +
Sbjct: 26 SSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTG 85
Query: 85 TSSPSDITTHSLVLSISPNLDTVLSLIKNTS---NVKPGSTSPNVNTAPTSPNITTGPNI 141
T+ TT S +I+ I T G TS + ++ + TT
Sbjct: 86 TTVTPVPTT-SNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSSTTSATTRITN 144
Query: 142 ATSS---PSDITTHS 153
AT+ S T +
Sbjct: 145 ATTLAPTLSSKGTSN 159
Score = 28.7 bits (63), Expect = 6.0
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 12 ASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGSTSPNVTTA 71
+ P+ N S +++P ITT ++T++ + +T + V + TSN + + V TA
Sbjct: 51 SGPSTNQSTTLTTTSAP-ITTTAILSTNTTTVTSTGTTVTPVPTTSNASTINVTTKV-TA 108
Query: 72 PVSPNITTGPNVATSSPSDITTHSL-VLSISPNLDTVLSLIKNTSNVKPGSTSPNVNTAP 130
G +T S++TT S S + + +L S+ + + P
Sbjct: 109 QNITATEAGTGTSTGVTSNVTTRSSSTTSATTRITNATTLAPTLSSKGTSNATKTTAELP 168
Query: 131 TSPN 134
T P+
Sbjct: 169 TVPD 172
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 29.2 bits (66), Expect = 4.2
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 16/67 (23%)
Query: 337 LNFVSSSVWIGAGSVLSTGIDVEKYLTQELAVLKRLSVGAKKSGQRDILLQ-GHLSI--- 392
L+ +S + +G + G+++ ++ELA K+LS IL Q H++
Sbjct: 44 LSMMSRLLKKDSGEITIDGLELTSTPSKELA--KKLS----------ILKQENHINSRLT 91
Query: 393 VKELVCF 399
V++LV F
Sbjct: 92 VRDLVGF 98
>gnl|CDD|217521 pfam03378, CAS_CSE1, CAS/CSE protein, C-terminus. Mammalian
cellular apoptosis susceptibility (CAS) proteins are
homologous to the yeast chromosome-segregation protein,
CSE1. This family aligns the C-terminal halves
(approximately). CAS is involved in both cellular
apoptosis and proliferation. Apoptosis is inhibited in
CAS-depleted cells, while the expression of CAS
correlates to the degree of cellular proliferation. Like
CSE1, it is essential for the mitotic checkpoint in the
cell cycle (CAS depletion blocks the cell in the G2
phase), and has been shown to be associated with the
microtubule network and the mitotic spindle, as is the
protein MEK, which is thought to regulate the
intracellular localisation (predominantly nuclear vs.
predominantly cytosolic) of CAS. In the nucleus, CAS
acts as a nuclear transport factor in the importin
pathway. The importin pathway mediates the nuclear
transport of several proteins that are necessary for
mitosis and further progression. CAS is therefore
thought to affect the cell cycle through its effect on
the nuclear transport of these proteins. Since apoptosis
also requires the nuclear import of several proteins
(such as P53 and transcription factors), it has been
suggested that CAS also enables apoptosis by
facilitating the nuclear import of at least a subset of
these essential proteins.
Length = 435
Score = 29.2 bits (66), Expect = 5.7
Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 30/117 (25%)
Query: 226 ILVCKEA-LELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLLLCDEKIIRACVQEQLT 284
++V +E L ++L + K P F H+L + + IR
Sbjct: 54 LIVIQEGVLPYADTVLQHLTNILLVVSKNPSNPRFNHYLFEAIGAL----IR-------- 101
Query: 285 LSVTLSYAYASNAEQACLVAFLQLLFP----LLTSDALETRVYTKSAEYFQLFCRTL 337
+A A+ A + F + LFP +L D E Y FQL + L
Sbjct: 102 --------FACKADPAAVSKFEEALFPPFQAILQEDVTEFMPYV-----FQLLAQLL 145
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
Length = 693
Score = 29.2 bits (65), Expect = 6.5
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 3 TGPNITT-GPASPNMNTSNVK 22
T P +TT G + PN NT NVK
Sbjct: 49 TSPKVTTCGSSQPNNNTFNVK 69
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 29.3 bits (66), Expect = 6.6
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 25 STSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGSTSPNVTTAPVSPNITTGPNVA 84
S+S N T+ SS S ++ S S ++ + P+ ++ +P+I P ++
Sbjct: 1 SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRR---KPSASSLLHTPSILPLPKLS 57
Query: 85 TSSPSDITTHSLVLSISPNL 104
+ SP +T + +P L
Sbjct: 58 SPSPPSVTLPPAATTQTPQL 77
>gnl|CDD|179749 PRK04147, PRK04147, N-acetylneuraminate lyase; Provisional.
Length = 293
Score = 28.8 bits (65), Expect = 7.1
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 410 VTNGLIRDLINDYLFPTSKLMLKLE 434
N +I LI + ++P K +L
Sbjct: 237 ECNDVIDLLIKNGVYPGLKEILHYM 261
>gnl|CDD|218190 pfam04651, Pox_A12, Poxvirus A12 protein.
Length = 188
Score = 28.2 bits (63), Expect = 7.2
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 100 ISPNLDTVLSLIKNTSNVKPGSTSPNVNTAPTSPNITTGPNIATSSPS 147
I+P L T+L+ I + G+ + N P+ + G + ++S S
Sbjct: 21 ITPQLRTLLAHISGEQANRGGNLAGPENN-PSDNEVKAGKRVTSASSS 67
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 29.1 bits (65), Expect = 8.0
Identities = 23/163 (14%), Positives = 47/163 (28%), Gaps = 19/163 (11%)
Query: 13 SPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSN-------------- 58
S + + P +I + +DI S +
Sbjct: 23 SDAFVSKQLLPPRRLQRKLNPISIRNGADNDIINSESKESFGKYALGHQIFSSFSSSPKL 82
Query: 59 VKPGSTSPNVTTAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVK 118
+ +++ +T +P + + T+ N ++ + S LS +P T +
Sbjct: 83 FQRRNSAGPITHSPSATSSTSSLN--SNDGDQFSPASDSLSFNP-SSTQSRKDSGPGDGS 139
Query: 119 PGSTSPNVNTAPTSPNITTGPNIATSSPSDITTHS-LVLSISP 160
P N P+S T P I + + + S
Sbjct: 140 PVQKRKNP-LLPSSSTHGTHPPIVFTDNNGSHAGAPNARSRKE 181
>gnl|CDD|225751 COG3210, FhaB, Large exoproteins involved in heme utilization or
adhesion [Intracellular trafficking and secretion].
Length = 1013
Score = 28.5 bits (63), Expect = 9.9
Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 18/179 (10%)
Query: 1 MNTGPNITTGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVK 60
+ I+T S N N+ NI T P SDI +++ + +
Sbjct: 790 LRDASFISTAAVSGNGKGGNI-------NINTTPIAGGLENSDIIANAVFGAGGSID--- 839
Query: 61 PGSTSPNVTTAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKPG 120
+T + + G N SDIT S+ S + ++T + P
Sbjct: 840 -INTQGIFGS-----SGRNGLNPRADGISDITAGSIETSGTVQINTPGVDPGSGLVSLPA 893
Query: 121 STSPNVNTAPTSPNITTGPNIATSSPSDITTHSLVLSISPNLDTVLSLIKIIWAASRGD 179
+ TG + +SS + T L +P ++ + W+ D
Sbjct: 894 NAGDTSQLIAGGCTGDTGSS--SSSTGFVATGRGGLPTNPGAESRSDAVGSTWSGGGVD 950
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.131 0.376
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,139,044
Number of extensions: 2397631
Number of successful extensions: 1605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1511
Number of HSP's successfully gapped: 99
Length of query: 517
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 416
Effective length of database: 6,457,848
Effective search space: 2686464768
Effective search space used: 2686464768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.5 bits)