RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15877
(517 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 7e-11
Identities = 71/427 (16%), Positives = 122/427 (28%), Gaps = 147/427 (34%)
Query: 149 ITTHSLVLSISPNLDTVLSLIKIIW-AAS--RGDFEMKAAPVEVFTRRTNEMFALDGEEN 205
+T L LS +L+ VL + + AS + F E FA D +E
Sbjct: 4 YSTRPLTLS-HGSLEHVLLVPTASFFIASQLQEQFNKILPEPT-------EGFAAD-DEP 54
Query: 206 SSAPG---------GDNAQGDTKDIDLDDILVCKEALELLTVCFLLNN---SLLKALLKE 253
++ + D +L L C+L N +L LL+E
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVG-QFDQVL--NLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 254 PKERLFAHFLCDTLLLCDEKIIR----ACVQEQLTLSVTLSYA--YASNAEQACLVA-F- 305
DT L+ +++I+ A + + + A A A LVA F
Sbjct: 112 N----------DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 306 -----------LQ-------------------LLFPLLTSDALETRVYTK---------- 325
L+ L L+ + +V+T+
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 326 -----SAEYF-------------QL-----FCRTLNF--------VSSSVWIGAG----S 350
+Y QL + L F + + G
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 351 VLSTGIDVEKYLTQELAVLKRL-SVGAKKSGQRDILLQGHLSIVKELV--CFLNSEKK-- 405
++ E + + L +G + + S+ ++ N+E
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVR--CYEAY---PNTSLPPSILEDSLENNEGVPS 336
Query: 406 -MEFGVTNGLIRDLINDYLFPTSKLMLKLEKTGEIS-FNEIAPA---VCQSPESISAGFS 460
M ++ L ++ + DY+ T+ L K EIS N V P+S
Sbjct: 337 PM-LSIS-NLTQEQVQDYVNKTNS-HLPAGKQVEISLVN--GAKNLVVSGPPQS------ 385
Query: 461 LLIGLCT 467
L GL
Sbjct: 386 -LYGLNL 391
Score = 52.0 bits (124), Expect = 4e-07
Identities = 36/189 (19%), Positives = 50/189 (26%), Gaps = 82/189 (43%)
Query: 134 NIT--TGPNIATSS-------------PSDITT--HSL-----------VLSISPNLDTV 165
+ T T P + P+D T HSL V+SI V
Sbjct: 1727 SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE---SLV 1783
Query: 166 LSLIKIIWAASRGDFEMKAAPVEVFTRRTNEMFALDG----------------EENSSAP 209
++ RG A P + R M A++ E
Sbjct: 1784 -EVVFY-----RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 210 GG------DNAQGDTKDIDLDDILVC---KEALELLTVCFLLNN---------SLLKALL 251
G N + V AL+ TV +LN L K+L
Sbjct: 1838 GWLVEIVNYNVENQQ--------YVAAGDLRALD--TVTNVLNFIKLQKIDIIELQKSLS 1887
Query: 252 KEP-KERLF 259
E + LF
Sbjct: 1888 LEEVEGHLF 1896
Score = 34.3 bits (78), Expect = 0.13
Identities = 41/279 (14%), Positives = 81/279 (29%), Gaps = 82/279 (29%)
Query: 167 SLIKIIWAASRGDFEMKAA----PVEVFTRRTNEMFALDGEENSSAPGG----DNAQGDT 218
+ +W +R D K +++ + G G +N
Sbjct: 1640 KAAQDVW--NRADNHFKDTYGFSILDIVINNPVNLTIHFG-----GEKGKRIRENYSAMI 1692
Query: 219 KDIDLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDT------LLLCDE 272
+ +D L ++ + + N + K L A T L L E
Sbjct: 1693 FETIVDGKLKTEKIFKEI------NEHSTSYTFRSEKGLLSA-----TQFTQPALTLM-E 1740
Query: 273 KIIRACVQEQLTLSVTLSYA------YASNAEQACLVAFLQLLFPLLTSDALETRVYTKS 326
K ++ + + ++A YA A L + ++ + +E
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYA-----A-LASLADVM-SI--ESLVEV------ 1785
Query: 327 AEYFQLFCR--TLNFVSSSVWIGAGSVLSTGID---VEKYLTQELAVLKRLSVGAKKSGQ 381
+F R T+ +G + I+ V +QE A+ + K++G
Sbjct: 1786 -----VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE-ALQYVVERVGKRTGW 1839
Query: 382 RDILLQ--------------GHLSIVKELVCFLNSEKKM 406
L++ G L + + LN K
Sbjct: 1840 ---LVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 3e-08
Identities = 49/358 (13%), Positives = 98/358 (27%), Gaps = 107/358 (29%)
Query: 219 KDI----------DLDDILVCKEALELLTVCFLLNNSLLKALLKEPKERLFAHFLCDTLL 268
KDI + D CK+ ++ +L+ + ++ L TLL
Sbjct: 19 KDILSVFEDAFVDNFD----CKDVQDMPKS--ILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 269 LCDEKIIRACVQEQLTLS---VTLSYAYASNAEQACLVAFLQLLFPLLTSDALETRVYTK 325
E++++ V+E L ++ + +++ L +V+ K
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND----NQVFAK 128
Query: 326 -----SAEYFQLFCRT-LNFVSSSVWI------GAG-SVLSTGIDVEKYLTQELAVLKR- 371
Y +L R L + + + G+G + ++ +DV V +
Sbjct: 129 YNVSRLQPYLKL--RQALLELRPAKNVLIDGVLGSGKTWVA--LDV----CLSYKVQCKM 180
Query: 372 ------LSVGAKKSGQRDIL--LQG-HLSIVKELVCFLNSEK--KMEFGVTNGLIRDLIN 420
L++ S +L LQ I + K+ +R L+
Sbjct: 181 DFKIFWLNLKNCNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 421 DYLFPTSKLML-------------------------------KLEKTGEISFNEIAPAVC 449
+ L+L T IS + + +
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL- 298
Query: 450 QSPESISAGFSLLIGLCTGSVPN---------LKLLVAMLTDMFYPDCAEPLTEWDYL 498
E S + +P L ++ + D T WD
Sbjct: 299 TPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG-------LAT-WDNW 347
Score = 55.6 bits (133), Expect = 3e-08
Identities = 53/337 (15%), Positives = 92/337 (27%), Gaps = 128/337 (37%)
Query: 77 ITTG-PNVATSSPSDITTHSLVLSISPNL--DTVLSLIKNTSNVKPGSTSPNVNTAPTSP 133
+TT V + TTH + S L D V SL+ + +P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD------------ 317
Query: 134 NITTGPNIATSSPSDITTHSLVLSISPNLDTVLSLIKIIWAASRGDFEM----KAAPVEV 189
P + VL+ +P + II + R K +
Sbjct: 318 -----------LPRE------VLTTNP-----R-RLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 190 FTRRTNEMF--ALDGEENSSAPGGDNAQGDTKDI--DL----DDILVCKEALELL----- 236
T E L+ E + + L + L L+
Sbjct: 355 LTT-IIESSLNVLEPAE-------------YRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 237 ------TVCFLLNNSLLKALLKEPKERLFA-HFL-CDTLLLCDE------KII------R 276
V L SL++ K+PKE + + + + + I+ +
Sbjct: 401 KSDVMVVVNKLHKYSLVE---KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 277 ACVQEQLTLSVTLSYAYA------SNAEQACLVAFLQLLFPLLTSDALETRVYTKSAEYF 330
+ L Y Y+ N E + LF ++ D
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT----LFRMVFLD-------------- 499
Query: 331 QLFCRTLNFV------SSSVWIGAGSVLSTGIDVEKY 361
F+ S+ W +GS+L+T ++ Y
Sbjct: 500 ------FRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen,
jelly- roll topology, structural protein; 1.36A
{Bacillus anthracis}
Length = 220
Score = 41.5 bits (97), Expect = 3e-04
Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 5/144 (3%)
Query: 3 TGPNITTGPASPNMNT-SNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKP 61
TGP TG T G P N D+ + V + S
Sbjct: 58 TGPTGPTGATGLTGPTGPTGPSGLGLPAGLYAFNSGG-ISLDLGINDPVPFNTVGSQFGT 116
Query: 62 GSTSPNVTTAPVSPNIT--TGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKP 119
+ + T +S T++ S + ++ ++ P T SLI + +
Sbjct: 117 AISQLDADTFVISETGFYKITVIANTATASVLGGLTIQVNGVPVPGTGSSLISLGAPIV- 175
Query: 120 GSTSPNVNTAPTSPNITTGPNIAT 143
+ T P+ + +
Sbjct: 176 IQAITQITTTPSLVEVIVTGLGLS 199
Score = 36.1 bits (83), Expect = 0.015
Identities = 28/146 (19%), Positives = 40/146 (27%), Gaps = 7/146 (4%)
Query: 3 TGPNITTGPASPNMNTSNVKP----GSTSPNITTGPNIATSSPSDITTHSLVLSISNTSN 58
TGP TGP P +T P G T P TG T L L +
Sbjct: 31 TGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGATGLTGPTGPTGPSGLGLPAGLYAF 90
Query: 59 VKPGSTSPNVTTAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVK 118
G + PV N S D T + + + +
Sbjct: 91 NSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVI---SETGFYKITVIANTATASV 147
Query: 119 PGSTSPNVNTAPTSPNITTGPNIATS 144
G + VN P ++ ++
Sbjct: 148 LGGLTIQVNGVPVPGTGSSLISLGAP 173
Score = 35.3 bits (81), Expect = 0.024
Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 6/161 (3%)
Query: 2 NTGPNITTGPASPNMNTSNVKP-GSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVK 60
TGP TGP P T G T P +G + + + + L + V
Sbjct: 48 TTGPTGPTGPTGPTGPTGATGLTGPTGPTGPSGLGLPAGLYA-FNSGGISLDLGINDPVP 106
Query: 61 PGSTSPNVTTAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKP- 119
+ TA + T T + + + ++ L++ N V
Sbjct: 107 FNTVGSQFGTAISQLDADTFVISETGFYKITVIAN---TATASVLGGLTIQVNGVPVPGT 163
Query: 120 GSTSPNVNTAPTSPNITTGPNIATSSPSDITTHSLVLSISP 160
GS+ ++ IT + +T L L++
Sbjct: 164 GSSLISLGAPIVIQAITQITTTPSLVEVIVTGLGLSLALGT 204
Score = 34.2 bits (78), Expect = 0.066
Identities = 20/139 (14%), Positives = 29/139 (20%), Gaps = 5/139 (3%)
Query: 3 TGPNITTGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPG 62
TGP+ PA S N N S + + S
Sbjct: 76 TGPSGLGLPAGLYAFNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTF-VISETGFY 134
Query: 63 STSPNVTTAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKPGST 122
+ TA S V + IS V+ I +
Sbjct: 135 KITVIANTATASVLGGLTIQVNGVP----VPGTGSSLISLGAPIVIQAITQITTTPSLVE 190
Query: 123 SPNVNTAPTSPNITTGPNI 141
+ T+ I
Sbjct: 191 VIVTGLGLSLALGTSASII 209
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 38.5 bits (89), Expect = 0.005
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 17/158 (10%)
Query: 9 TGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTS-NVKPGSTSPN 67
+ SP ++ +SP +T P SSPS T S S TS + P S S +
Sbjct: 1544 SSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSP---SYSPTSPSYSPTSPSYS 1600
Query: 68 VT---TAPVSPNIT-TGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKPGSTS 123
T + SP+ + T P+ + +SPS T SP+ + ++ TS
Sbjct: 1601 PTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--------SPTSPSYSPTS 1652
Query: 124 PNVNTAPTSPNITTGPNIATSSPSDITTHSLVLSISPN 161
P+ + S + T P+ + +SPS T SP+
Sbjct: 1653 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPS 1689
Score = 35.1 bits (80), Expect = 0.063
Identities = 36/165 (21%), Positives = 55/165 (33%), Gaps = 21/165 (12%)
Query: 1 MNTGPNITTGPASPNMNTSNVKPGST--------SPNITTGPNIATSSPSDITTHSLVLS 52
+ G +P + V G SP + G +
Sbjct: 1472 GMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPY 1531
Query: 53 ISNTS---------NVKPGSTSPNVTTAPVSPNITTGPNVATSSPSDITTHSLVLSISPN 103
S + PG + + +P SP +T P SSPS T SP+
Sbjct: 1532 KGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPS 1591
Query: 104 LDTVLSLIKNTSNVKPGSTSPNVNTAPTSPNIT-TGPNIATSSPS 147
TS +TSP+ +PTSP+ + T P+ + +SPS
Sbjct: 1592 YSPTSPSYSPTSP-SYSATSPSY--SPTSPSYSPTSPSYSPTSPS 1633
Score = 32.4 bits (73), Expect = 0.52
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 11 PASPNMNTSNVKPGSTSPNIT-TGPNIATSSPSDITTHSLVLSISNTSNVKPGSTSPNV- 68
P SP+ + ++ TSP+ + T P+ + +SPS T S + + S SP
Sbjct: 1671 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1730
Query: 69 TTAPVSPNIT-TGPNVATSSPS 89
+ +P SP+ + T P+ + +SPS
Sbjct: 1731 SYSPTSPSYSPTSPSYSPTSPS 1752
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 36.0 bits (82), Expect = 0.028
Identities = 22/151 (14%), Positives = 38/151 (25%), Gaps = 16/151 (10%)
Query: 2 NTGPNITTGPASPNM------NTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISN 55
TG P SP N + + GS + ++ +
Sbjct: 321 GTGSTGNQNPGSPRPGSTGTWNPGSSERGSAGHWTSESSVSGSTGQWHSES-----GSFR 375
Query: 56 TSNVKPGSTSP-NVTTAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNT 114
+ G+ P N NV+ + + T LV + + + K T
Sbjct: 376 PDSPGSGNARPNNPDWGTFEE---VSGNVSPGTRREYHTEKLV-TSKGDKELRTGKEKVT 431
Query: 115 SNVKPGSTSPNVNTAPTSPNITTGPNIATSS 145
S + T + G T
Sbjct: 432 SGSTTTTRRSCSKTVTKTVIGPDGHKEVTKE 462
Score = 36.0 bits (82), Expect = 0.032
Identities = 20/141 (14%), Positives = 39/141 (27%), Gaps = 10/141 (7%)
Query: 15 NMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGSTSPNVTTAPVS 74
M +PG + T S ++ + N+ + PGST + +
Sbjct: 237 QMRMELERPGGNEITRGGSTSYGTGSETESPRNPSSAGSWNSGSSGPGSTGNRNPGSSGT 296
Query: 75 PNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKPGSTSP----NVNTAP 130
T P S S + T + +N + +PGST +
Sbjct: 297 GGTATW------KPGSSGPGSTGSWNSGSSGTGSTGNQNPGSPRPGSTGTWNPGSSERGS 350
Query: 131 TSPNITTGPNIATSSPSDITT 151
+ ++ +
Sbjct: 351 AGHWTSESSVSGSTGQWHSES 371
Score = 35.2 bits (80), Expect = 0.045
Identities = 18/145 (12%), Positives = 40/145 (27%), Gaps = 4/145 (2%)
Query: 2 NTGPNITTGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKP 61
+ +++ + + + +P S N + +++ ++ + +
Sbjct: 355 TSESSVSGSTGQWHSESGSFRPDSPGSGNARPNNPDWGTFEEVSG-NVSPGTRREYHTEK 413
Query: 62 GSTSPNVTTAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKPGS 121
TS T + T+ S T + + D + K + GS
Sbjct: 414 LVTSKGDKELRTGKEKVTSGSTTTTRRSCSKTVTKTVI---GPDGHKEVTKEVVTSEDGS 470
Query: 122 TSPNVNTAPTSPNITTGPNIATSSP 146
P T I T P
Sbjct: 471 DCPEAMDLGTLSGIGTLDGFRHRHP 495
Score = 32.5 bits (73), Expect = 0.33
Identities = 24/153 (15%), Positives = 45/153 (29%), Gaps = 7/153 (4%)
Query: 2 NTGPNITTGPASP-NMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVK 60
TG T P S +T + GS+ T N + P +T + S +
Sbjct: 295 GTGGTATWKPGSSGPGSTGSWNSGSSGTGSTGNQNPGSPRPG--STGTWNPGSSERGSAG 352
Query: 61 PGSTSPNVTTAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKPG 120
++ +V+ + + +G S S + + +
Sbjct: 353 HWTSESSVSGSTGQWHSESGSFRPDSPGSGNARPNNPDWGTFEEVSGNVSPGTRREYHTE 412
Query: 121 STSPNVNTAPTSPNITTGPNIATSSPSDITTHS 153
+ T+ + TG TS + T S
Sbjct: 413 ----KLVTSKGDKELRTGKEKVTSGSTTTTRRS 441
>2q7t_A Protein TRAI, DNA helicase I; relaxase, hydrolase, conjugation;
HET: TMP; 2.42A {Escherichia coli} PDB: 2q7u_A* 2a0i_A
1p4d_A
Length = 301
Score = 32.4 bits (73), Expect = 0.32
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 173 WAASRGDFEMKAAPVEVFTRRTNEMFALDGEENSSAPGGDNAQGDT----KDIDLDDIL 227
G +EM PVE F+ R+ + GE+ S D A DT + +D + +
Sbjct: 217 VVGKHGMWEMPGVPVEAFSGRSQTIREAVGEDASLK-SRDVAALDTRKSKQHVDPEIKM 274
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 32.8 bits (74), Expect = 0.36
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 11 PASPNMNTSNVKPGSTSPNIT-TGPNIATSSPS-DITTHSLVLSISNTSNVKPGSTSPNV 68
P SP+ + ++ TSP+ + T P+ + +SP+ T+ S + + S P + +
Sbjct: 1628 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1687
Query: 69 TTAPVSPNIT-TGPNVATSSPS 89
+ +P SPN + T P+ + +SP
Sbjct: 1688 SYSPTSPNYSPTSPSYSPTSPG 1709
Score = 29.7 bits (66), Expect = 3.1
Identities = 33/145 (22%), Positives = 52/145 (35%), Gaps = 38/145 (26%)
Query: 11 PASPNMNTSNVKPGSTSPNIT-TGPNIATSSPSDITTHSLVLSISNTSNVKPGSTSPNVT 69
P SP+ + ++ TSP+ + T P+ + +SPS P S + + T
Sbjct: 1621 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS----------------YSPTSPAYSPT 1664
Query: 70 TAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTSNVKPGSTSPNVNTA 129
+ SP T P+ + +SPS T SPN TSP+ +
Sbjct: 1665 SPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPNYS---------------PTSPSYS-- 1704
Query: 130 PTSPN-ITTGPNIATSSPSDITTHS 153
PTSP P + +
Sbjct: 1705 PTSPGYSPGSPAYSPKQDEQKHNEN 1729
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein
serine/threonine kinase, S based drug design, MAP3K14,
transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A*
4g3c_A 4dn5_A*
Length = 336
Score = 30.1 bits (68), Expect = 1.9
Identities = 18/95 (18%), Positives = 25/95 (26%), Gaps = 34/95 (35%)
Query: 346 IGAGS---V-----LSTG-------IDVEKYLTQELAVLKRLSVGAKKSGQRDILLQGHL 390
+G GS V TG + +E + +EL LS
Sbjct: 66 VGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLS---------------SP 110
Query: 391 SIVKELVCFLNSEKK---MEFGVTNGLIRDLINDY 422
IV ME + G + LI
Sbjct: 111 RIVPLYGAVREGPWVNIFMEL-LEGGSLGQLIKQM 144
>1m93_B Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE
inhibitor, viral protein; 1.65A {Cowpox virus} SCOP:
e.1.1.1
Length = 245
Score = 28.3 bits (64), Expect = 5.9
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 411 TNGLIRDLINDYLFPTSKLML 431
T G I L+++ L P + L+
Sbjct: 52 TEGKINPLLDEPLSPDTSLLA 72
>2j42_A C2-II, C2 toxin component-II; 3.13A {Clostridium botulinum}
Length = 721
Score = 28.4 bits (62), Expect = 6.5
Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 20/153 (13%)
Query: 9 TGPASPNMNTSNVKPGSTSPNITTGPNIATSSPSDITTHSLVLSISNTSNVKPGSTSPNV 68
+ +PN+ N T+P P + PG T P +
Sbjct: 359 SAYINPNIRYYNT---GTAPVYNVTPTTTIVIDKQSVATIKGQESLIGDYLNPGGTYPII 415
Query: 69 TTAPVSPNITTGPNVATSSPSDITTHSLVLSISPNLDTVLSLIKNTS-NVKPGSTSPNVN 127
P++ N + ++ I N + + S+ + + + N
Sbjct: 416 GEPPMALN----------TMDQFSSR----LIPINYNQLKSIDNGGTVMLSTSQFTGNFA 461
Query: 128 TAPTSPNITTGPNIATSSPSDI--TTHSLVLSI 158
++ N+ T N I TT SL LS+
Sbjct: 462 KYNSNGNLVTDGNNWGPYLGTIKSTTASLTLSL 494
>2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B-
hydrolase fold, acyltransferase, acetyl coenzyme A,
antibiotic biosynthesis; HET: COA; 2.2A {Acremonium
chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A*
Length = 444
Score = 28.1 bits (63), Expect = 7.2
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 8 TTGPASPNMNTSNVKP-GSTSPNIT 31
+ GP SP+ + +P G+ P T
Sbjct: 157 SAGPCSPDPDAEGQRPYGAKFPRTT 181
>1f0c_A ICE inhibitor; apoptosis, caspase inhibitor, protease inhibitor,
serpin, viral protein; 2.26A {Cowpox virus} SCOP:
e.1.1.1 PDB: 1c8o_A
Length = 305
Score = 27.9 bits (63), Expect = 8.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 411 TNGLIRDLINDYLFPTSKLML 431
T G I L+++ L P + L+
Sbjct: 107 TEGKINPLLDEPLSPDTCLLA 127
>3nda_A Serpin-2; vaccination target, TICK, hydrolase inhibitor; HET: 1PE;
1.80A {Ixodes ricinus}
Length = 377
Score = 27.9 bits (63), Expect = 9.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 411 TNGLIRDLINDYLFPTSKLML 431
T+ I L N+ L P + L+L
Sbjct: 146 THDKIEKLFNEPLDPDTLLVL 166
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.376
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,229,339
Number of extensions: 418755
Number of successful extensions: 631
Number of sequences better than 10.0: 1
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 38
Length of query: 517
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 419
Effective length of database: 3,965,535
Effective search space: 1661559165
Effective search space used: 1661559165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.6 bits)