RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15877
         (517 letters)



>d2ccva1 b.154.1.1 (A:1-99) Agglutinin HPA {Roman snail (Helix
           pomatia) [TaxId: 6536]}
          Length = 99

 Score = 27.9 bits (62), Expect = 0.98
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 97  VLSISPNLDTVLSLIKNTSNVKPGSTSPNVNTAPTSPNITTGPNI-ATSSPSDITTHSLV 155
           V S  P  D    L KN +   P    P V  + T  ++    N+   +    ++     
Sbjct: 18  VPSDDPGRDNTRELAKNITFASPYCRPPVVLLSITQLDVEQSQNLRVIARLYSVSPSGFK 77

Query: 156 LSISPNLDTVLSLIKIIWAA 175
            S     +T +  + I W +
Sbjct: 78  ASCYTWHNTKVYSMSISWIS 97


>d1p4da_ d.89.1.5 (A:) F factor TraI relaxase {Escherichia coli
           [TaxId: 562]}
          Length = 307

 Score = 28.7 bits (64), Expect = 1.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 177 RGDFEMKAAPVEVFTRRTNEMFALDGEENSSAPGGDNAQGDTKD 220
            G +EM   PVE F+ R+  +    GE+ S     D A  DT+ 
Sbjct: 221 HGMWEMPGVPVEAFSGRSQTIREAVGEDASLK-SRDVAALDTRK 263


>d1d3ya_ e.12.1.1 (A:) DNA topoisomerase IV, alpha subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 298

 Score = 27.7 bits (61), Expect = 3.0
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 340 VSSSVWIGAGSVLSTGIDVEKYLTQELAVLKRLSVGAKKSGQRDILLQGHLSIVKELVCF 399
           + ++  IG   V     D+  Y      + ++     K   + D  ++      K L   
Sbjct: 207 IPAARLIG---VTPQ--DIIDYDLPTHPLKEQDIKRIKDGLKNDDFVRSFPEWQKALKQM 261

Query: 400 LNSEKKMEF-GVTNGLIRDLINDYL 423
           L+   + E   +    ++ ++N YL
Sbjct: 262 LDMGVRAEQQSLAKYGLKYVVNTYL 286


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,737,517
Number of extensions: 76158
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 6
Length of query: 517
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 428
Effective length of database: 1,185,626
Effective search space: 507447928
Effective search space used: 507447928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.2 bits)