BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15878
(693 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust.
Identities = 247/704 (35%), Positives = 384/704 (54%), Gaps = 37/704 (5%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK SL+ E F++EEYAG KG++PP KR+ KKS+YI TIEK L+ +LI+
Sbjct: 352 IVQEKISSLSSFGIELGFFVEEYAGSKGRFPPIKRR-EKKSLYIATIEKAHSLVNALIET 410
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
+R+ +GL+V+DE HM+ E RG ILE ++KVLY K+ QI MSAT+ N+ L F++
Sbjct: 411 SRLSTLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLNNVEDLQAFLK 470
Query: 121 GITYVENSRPTKHSEYVTVDKRVF----QSFDGKSLTEIYADNLDYSLTGSGPDAVLHLV 176
Y RP + E++ V+ ++ Q+ DG + + + + +L PD ++ LV
Sbjct: 471 AEYYTSQFRPVELKEFLKVNDTIYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALV 530
Query: 177 Q---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTN 233
N L+FC SK C N+A L ++++EK ++I++L+ +GK+
Sbjct: 531 TEVIPNYSCLVFCPSKKNCENVAEMLCKFLSKDYLNHREKEKCEVIKSLRNIGNGKVCPV 590
Query: 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV 293
L+ + +G+AYHH+ LT+ ER+L+EEAY G L ++ CTSTLAAGVNLPA+RVI+R YV
Sbjct: 591 LKRTVPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYV 650
Query: 294 GRDFISLNMYKQMVGRAGRTGLQESGESIMLC--KTMQDFLRFSSMMNAGP-EPISSHMD 350
F+ N YKQMVGRAGR G+ +GESI+L K Q L S GP E SH+
Sbjct: 651 ANTFLKRNQYKQMVGRAGRAGIDTAGESILLLQEKDKQQVLELIS----GPLETCCSHLV 706
Query: 351 ---PPTLVDLILEVVAANLCSSLEDVKTLIKHTLF-YQLKSPEDQQTFLETTLSEIVASL 406
+ L L ++ + +SL D+ + T F Q K +++ E T+ +
Sbjct: 707 EEFTKGIQALFLSLIGLKIAASLGDIYQFMSGTFFGVQQKILLKEKSLWEITVDAL--EH 764
Query: 407 LASKGTMLTMNEAG-------HLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLN 459
L KG +L + G H +T + +A+ + + C +Y DL L +
Sbjct: 765 LTEKG-LLQKDSCGDNEGLECHFRITKLGQASFKGAIDLAYCDTLYRDLKKGLEGLVLES 823
Query: 460 SLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL 519
LH+++L P + S+ + + ++ + P VA LGV+E+ + G+
Sbjct: 824 LLHLIYLTTPYDLAAQSEPDWMV---YFKQFGQLSPTEQNVAALLGVSESFIGKKAAGQA 880
Query: 520 KDEK--KALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFC 577
+K K ++ R + + +LY +L N V++ + + ++QN L + F+S V FC
Sbjct: 881 VRKKVDKNVVNRLYLSFVLYSLLKETNVWSVSEKFNLPRGYIQNLLMGAASFSSCVLHFC 940
Query: 578 EELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARAD 637
EEL E W YK LL +L + L YC L LM++ GV GRA+QL NAGY S+ +A A+
Sbjct: 941 EELEEFWVYKALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYNAGYRSIMHLANAN 1000
Query: 638 AKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNL 681
+ +V I HL R AR ++S+AK+ +K EA++ + L
Sbjct: 1001 PEVLVKTIDHLSRRQARQIVSSAKMLL---HEKAEALQGEAEEL 1041
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 247/705 (35%), Positives = 391/705 (55%), Gaps = 38/705 (5%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK L+ E F++EEYAG KG++PPTKR+ KKS+YI TIEKG L+ SLI+
Sbjct: 393 IVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRR-EKKSLYIATIEKGHSLVNSLIET 451
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
RID +GL+V+DE HM+ E RG LE ++K+LY K+ QI MSAT+ N+ L F++
Sbjct: 452 GRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILYTSKTTQIIGMSATLNNVEDLQKFLQ 511
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQ----SFDGKSLTEIYADNLDYSLTGSGPDAVLHLV 176
Y RP + EY+ ++ +++ + +G + + + +L PD ++ LV
Sbjct: 512 AEYYTSQFRPVELKEYLKINDTIYEVDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVALV 571
Query: 177 Q---GNLMVLIFCSSKIACSNLA-LRLQFDRFPGTKEY---KKQEKEDLIEALKEENDGK 229
N L+FC SK C N+A + +F +KEY K++EK ++I+ LK +G
Sbjct: 572 TEVIPNYSCLVFCPSKKNCENVAEMICKF----LSKEYLKHKEKEKCEVIKNLKNIGNGN 627
Query: 230 LSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR 289
L L+ I +GVAYHH+ LT+ ER+L+EEAY G L + CTSTLAAGVNLPA+RVI+R
Sbjct: 628 LCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILR 687
Query: 290 DSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHM 349
YV ++F+ N YKQM+GRAGR G+ GESI++ + +D + ++ E SH+
Sbjct: 688 APYVAKEFLKRNQYKQMIGRAGRAGIDTIGESILILQE-KDKQQVLELITKPLENCYSHL 746
Query: 350 D---PPTLVDLILEVVAANLCSSLEDVKTLIKHTLF-YQLKSPEDQQTFLETT---LSEI 402
+ L L ++ + ++L+D+ + T F Q K +++ E T L +
Sbjct: 747 VQEFTKGIQTLFLSLIGLKIATNLDDIYHFMNGTFFGVQQKVLLKEKSLWEITVESLRYL 806
Query: 403 VASLLASKGTMLTMNEAG--HLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNS 460
L K T+ E + +T + +A+ + + C I+Y DL L +
Sbjct: 807 TEKGLLQKDTIYKSEEEVQYNFHITKLGRASFKGTIDLAYCDILYRDLKKGLEGLVLESL 866
Query: 461 LHMLFLVIP--LEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGK 518
LH+++L P L + D ++ R ++++ P VA LGV+E+ + +G+
Sbjct: 867 LHLIYLTTPYDLVSQCNPDWMIYFR-----QFSQLSPAEQNVAAILGVSESFIGKKASGQ 921
Query: 519 LKDEK--KALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRF 576
+K K ++ R + + +LY +L N V++ + + ++QN L T+ F+S V F
Sbjct: 922 AIGKKVDKNVVNRLYLSFVLYTLLKETNIWTVSEKFNMPRGYIQNLLTGTASFSSCVLHF 981
Query: 577 CEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARA 636
CEEL E W Y+ LL +L + L YC L LM++ GV GRA+QL +AGY SL +A A
Sbjct: 982 CEELEEFWVYRALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYSAGYKSLMHLANA 1041
Query: 637 DAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNL 681
+ + +V I HL R A+ ++S+AK+ +K EA++ ++ L
Sbjct: 1042 NPEVLVRTIDHLSRRQAKQIVSSAKMLL---HEKAEALQEEVEEL 1083
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 200/719 (27%), Positives = 342/719 (47%), Gaps = 102/719 (14%)
Query: 13 AEEFKFYLE---EYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRID 64
A+E K+YL+ + G+K G P+ R + I +CTIE+ + LI LI+EN++D
Sbjct: 150 AKEKKYYLQSLFQEVGIKVDGYMGSTSPS-RHFSSLDIAVCTIERANGLINRLIEENKMD 208
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLY---------------LKKSIQIFAMSATI 109
+G++V+DE HML + RG +LE +++K+ Y L ++QI MSAT+
Sbjct: 209 LLGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATL 268
Query: 110 GNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSF-----DGKSLTEIYADNLDYSL 164
N+ +++++ Y + RP E V V ++ S + + + ++ D
Sbjct: 269 PNLELVASWLNAELYHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDE----- 323
Query: 165 TGSGPDAVLHL----VQGNLMVLIFCSSKIACSNLA---------LRLQFDRFPGTKE-- 209
D V+ L + N VL+FC SK C LA L Q + E
Sbjct: 324 -----DHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECP 378
Query: 210 ---YKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTL 266
+++E ++++ L+ G L + L++ + +GVA+HHA LT ER +IE A+ G +
Sbjct: 379 PVILEQKELLEVMDQLRRLPSG-LDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLI 437
Query: 267 QIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCK 326
+++ TSTL++GVNLPA+RVIIR G + + YKQMVGRAGR G+ GESI++CK
Sbjct: 438 RVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGRAGRKGVDTVGESILICK 497
Query: 327 TMQDFLRFSSMMNAGPEPISSHMD-------PPTLVDLILEVVAANLCSSLEDVKTLIKH 379
+ + +++ +P+ S + +++ ILE++ + S+ +D+ T
Sbjct: 498 NSEKS-KGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAAC 556
Query: 380 TLFYQLKSPEDQQTFLETTLS----------------EIVASLLASKGTMLTMNEAGHLS 423
T F E +Q S E + S AS GT + HL
Sbjct: 557 T-FLAASMKEGKQGIQRNQESVQLGAIEACVMWLLENEFIQSTEASDGTEGKVYHPTHL- 614
Query: 424 LTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSR 483
A + + LS L I++DL F L N LH+L+LV P+ D +
Sbjct: 615 ----GSATLSSSLSPADTLDIFADLQRAMKGFVLENDLHILYLVTPMF----EDWTTIDW 666
Query: 484 SKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL------KDEKKALLCRFFHACILY 537
+ + + K RVAE +GV E +A V GK+ + + A+ RFF + +L
Sbjct: 667 YRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVARTERQHRQMAIHKRFFTSLVLL 726
Query: 538 DVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQ-LLTDLPQT 596
D+++ +++ + YG +Q+ + +A + F L W + LL+ +
Sbjct: 727 DLISEVPLREINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLG--WHNMELLLSQFQKR 784
Query: 597 LMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRH-LPLRSAR 654
L + L L+ + + RAR L +G+ ++ +ARA+ E+ +++ +P +SAR
Sbjct: 785 LTFGIQRELCDLVRVSLLNAQRARVLYASGFHTVADLARANIVEVEVILKNAVPFKSAR 843
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 172/645 (26%), Positives = 302/645 (46%), Gaps = 73/645 (11%)
Query: 42 IYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQ 101
+ I T EK L+ + + + ++++DE H +++P+RGPILE +VS++L Q
Sbjct: 118 VVIATYEKFDSLL--RVSPSLARNVSVLIVDEIHSVSDPKRGPILESIVSRMLASAGEAQ 175
Query: 102 IFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDG-KSLTEIYADNL 160
+ +SAT+ N ++ +I G + RP EYV + +++ G + + +Y
Sbjct: 176 LVGLSATVPNAGEIAEWIGGKIVESSWRPVPLREYVFKEYKLYSPTGGLREVPRVYGL-- 233
Query: 161 DYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIE 220
Y L D ++ L+F S+ LA R R G + ++ + E
Sbjct: 234 -YDL-----DLAAEAIEDGGQALVFTYSRRRAVTLAKRAA-KRL-GRRLSSREARVYSAE 285
Query: 221 ALKEENDGK-LSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGV 279
A + E + ++ L I G+AYHHA L R+ +EEA+ AG ++++ T TLAAGV
Sbjct: 286 ASRAEGAPRSVAEELASLIAAGIAYHHAGLPPSLRKTVEEAFRAGAVKVVYSTPTLAAGV 345
Query: 280 NLPAQRVIIRDSY----VG-RDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM---QDF 331
NLPA+RV+I DSY G R+ I + YKQM GRAGR GL E GE+I++ + + +D
Sbjct: 346 NLPARRVVI-DSYYRYEAGFREPIRVAEYKQMAGRAGRPGLDEFGEAIIVAERLDRPEDL 404
Query: 332 LRFSSMMNAGPEPISSHMDP-PTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPED 390
+ S + A PE + S + L IL +VA S+ ++ + TL Y L
Sbjct: 405 I--SGYIRAPPERVESRLAGLRGLRHFILGIVAPEGEVSIGSIEKVSGLTL-YSL----- 456
Query: 391 QQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLH 450
Q+ T++ V L A L + ++ TS+ + L + + ++ H
Sbjct: 457 QRGLPRETIARAVEDLSAWG---LVEVKGWRIAATSLGREVAAVYLDPESVPVFREEVKH 513
Query: 451 NKLNFCLLNSLHMLFLV--IPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTE 508
L+F N +L+L+ +P R+P+ ++ + P+ L + LG E
Sbjct: 514 --LSFD--NEFDILYLISTMPDMVRLPA--TRREEERLLEAILDASPRMLSSVDWLG-PE 566
Query: 509 NLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSY 568
+ A+ K A++ + + ++ + + +G+ L N ++ +
Sbjct: 567 EMAAV---------KTAVVLKLW--------IDEASEDTIYGEWGVHTGDLLNMVSTAEW 609
Query: 569 FASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYS 628
AS + R L +L+ + + + + P L L+++PGV RAR L AGY
Sbjct: 610 IASGLSRIAPYLGLNSKVSHILSVIARRIKHGVKPELLQLVEIPGVGRVRARILFEAGYR 669
Query: 629 SLELIARADAKEMVAKIRHLPL---RSARNLISAAKLHFITKMDK 670
S+E +A A A++++ LPL +AR + L F+ ++D+
Sbjct: 670 SIEDLATARAEDLM----RLPLIGPSTARQI-----LEFLGRVDE 705
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 130/403 (32%), Positives = 206/403 (51%), Gaps = 47/403 (11%)
Query: 10 AKAAEEFKFYLE------EYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLI 58
A A+E++ +LE + GVK G + L +K I + T EK L+ +
Sbjct: 78 ALASEKYDRFLEFSKLPIKPDGVKVGIATGDFDSRDEYLGEKDIIVATSEKTDSLLRN-- 135
Query: 59 QENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTF 118
+ + + ++V DE H+++ P RGP LE ++K+ + ++QI A+SATIGN AL+ +
Sbjct: 136 GASWLSGLSVVVADEVHLIDSPNRGPTLEVTLAKLRKINVNLQILALSATIGNAKALAKW 195
Query: 119 IEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQG 178
++ RPT E V F G+++T ++ +GPD V LV
Sbjct: 196 MDAALVQSEWRPTTLKEGV---------FYGRAIT---FKKEKRTVNNAGPDEVNSLVAD 243
Query: 179 NL----MVLIFCSSKIACSNLALR----LQFDRFPGTKEYKKQEKEDLIEALKEENDGKL 230
L L+F +++ + ++A + L P KE + K+D++ + + KL
Sbjct: 244 TLEEGGQCLVFANTRKSSESIAQKVARSLSKKLQPAEKEQLAKLKQDVLRHAETDTCEKL 303
Query: 231 STNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRD 290
+ EC+ GVA+HHA L RR++E+ + L++I CT TLAAG+NLPA+RVIIRD
Sbjct: 304 A----ECVGNGVAFHHAGLKGEHRRIVEDGFRQNILKVIACTPTLAAGLNLPARRVIIRD 359
Query: 291 ------SYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRF-SSMMNAGPE 343
+Y G I + YKQM GRAGR L GE++++ K +F + +NA PE
Sbjct: 360 YKRFDVNY-GSVPIPVLEYKQMAGRAGRPRLDPYGEAVLIAKNYDEFGELMENYINADPE 418
Query: 344 PISSHMDP-PTLVDLILEVVAANLCSSLEDVKTLIKHTLF-YQ 384
I+S + P + L VA + C S +D+K + T F YQ
Sbjct: 419 HITSKLGTEPAMRAHALSAVATDFCRSRQDLKAFMDTTFFAYQ 461
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 176/677 (25%), Positives = 300/677 (44%), Gaps = 52/677 (7%)
Query: 15 EFKFYLE---EYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVI 71
+F Y E A G Y + L + I T EK L+ ++ + I +G ++I
Sbjct: 88 DFNTYSELGIRVAASTGDYNSEDKWLGSYDVIITTYEKLDSLL--RLKPSWIWNVGQLII 145
Query: 72 DEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPT 131
DE H +N+ +RGPI+E +V+K+ L + QI +SATIGN L+ ++ + RP
Sbjct: 146 DEIHFINDDERGPIIESIVAKLRMLNLNPQIIGLSATIGNPEELANWLNAKLVKSDWRPV 205
Query: 132 KHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNL----MVLIFCS 187
E V V DG+ ++G G D++++L L VL+F S
Sbjct: 206 SLREGVYHKGVVTYVNDGEK-----------RISGQG-DSLINLTVDTLNDGGQVLVFSS 253
Query: 188 SKIACSNLALRL-QFDRFPGTKEYKKQEKEDLIEALKEENDGK-LSTNLEECILYGVAYH 245
S+ +A +L ++ + E L E ++E + + L+ L I GV++H
Sbjct: 254 SRQGAVRIARKLAEYICSSPVRYIDPGEAGKLAEEVRETSSSRILAEELTGLIKCGVSFH 313
Query: 246 HADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVII---RDSYVGRDFISLNM 302
HA L RR+IEE + G L+++ T+TLAAGVNLPA+RVI+ R G FI + +
Sbjct: 314 HAGLELEVRRVIEEGFRRGVLRVLASTTTLAAGVNLPARRVIVNEYRRYEPGYGFIEIPV 373
Query: 303 --YKQMVGRAGRTGLQESGESIMLCKTMQ--DFLRFSSMMNAGPEPISSH-MDPPTLVDL 357
YKQM GRAGR GL GE+I++ + D++ + + PE + S+ M+P +L
Sbjct: 374 MEYKQMAGRAGRPGLDPYGEAIIIVSSKDEVDYV-IDKYIKSPPEYVKSNFMNPTSLKFH 432
Query: 358 ILEVVAANLCSSLEDVKTLIKHTL--FYQLKSPEDQQTFLETTLSEIVASLLASKGTMLT 415
L VA+ +++++ +T F S Q + +S I+ L+
Sbjct: 433 TLSAVASQYAETIDELVKFTSNTFAGFQGKLSAMIQANSVRRMISRIIDELVDYG---FI 489
Query: 416 MNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIP 475
+ L T + + L D + L N + LN+ ++ +V +IP
Sbjct: 490 IRNGDKLEATEVGAVVNRMYLDPDTAHVFIMG-LRNLNSDADLNAYSLMLVV--KSPKIP 546
Query: 476 SDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACI 535
+ + R+++ + + + + LV ++ + L F A
Sbjct: 547 K--VKVRRNELDELAQQAASMWSSIPLKPSDVDELV------NYPEDYEDFLSEFKTAMA 598
Query: 536 LYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQ 595
L + +N N ++ K Y +Q L+ + + + L L L
Sbjct: 599 LLEWINESNEDQIMKTYDVQPGDLRVLSDQAEWLIGALQELARTLGLSGNVVNGLRALRY 658
Query: 596 TLMYCRAPNLRAL-MDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSAR 654
+ Y L L ++L GV RAR L AGY S+E +A+A+ ++ +IR + + A
Sbjct: 659 RVKYGVNDELLELVVNLEGVGRVRARALYAAGYRSIEDLAKANVSDL-TRIRGIGDKIAG 717
Query: 655 NLISAAKLHFITKMDKV 671
++I A H + K +V
Sbjct: 718 SIIEQA--HQLVKDGRV 732
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 194/392 (49%), Gaps = 35/392 (8%)
Query: 10 AKAAEEFKFYLE-EYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRI 63
A A+E+F+ + E G++ G Y L I + T EK L+ + + +
Sbjct: 78 ALASEKFRRFREFSELGIRVGISTGDYDLRDEGLGVNDIIVATSEKTDSLLRN--ETVWM 135
Query: 64 DEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGIT 123
EI ++V DE H+++ P RGP LE ++K+ + S QI A+SAT+GN + L+ ++E
Sbjct: 136 QEISVVVADEVHLIDSPDRGPTLEVTLAKLRKMNPSCQILALSATVGNADELAVWLEAEL 195
Query: 124 YVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVL 183
V RPT+ E V F+G + ++ S + L ++ + L
Sbjct: 196 VVSEWRPTELLEGVF--------FNGTFYCKDREKTVEQSTKDEAVNLALDTLKKDGQCL 247
Query: 184 IFCSSKIACSNLALRLQFDRFPGTKEYKKQEKED------LIEALKEENDGKLSTNLEEC 237
+F SS+ C + F + + K ED + + + E ++ STNL C
Sbjct: 248 VFESSRKNC------MAFAKKAASTVKKTLSAEDRNALAGIADEILENSETDTSTNLAVC 301
Query: 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRD-----SY 292
I G A+HHA LT R L+E+ + AG +++I T TLAAG+NLPA+RVIIR+ S
Sbjct: 302 IRSGTAFHHAGLTTPLRELVEDGFRAGRIKLISSTPTLAAGLNLPARRVIIRNYRRYSSE 361
Query: 293 VGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFL-RFSSMMNAGPEPISSHMDP 351
G I + YKQM GRAGR L GE++++ K+ ++F+ F + + A E I S +
Sbjct: 362 DGMQPIPVLEYKQMAGRAGRPRLDPYGEAVLVAKSYKEFVFLFENYIEANAEDIWSKLGT 421
Query: 352 P-TLVDLILEVVAANLCSSLEDVKTLIKHTLF 382
L +L ++ + +++ ++ T F
Sbjct: 422 ENALRTHVLSTISNGFARTYDELMDFLEATFF 453
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/390 (29%), Positives = 188/390 (48%), Gaps = 31/390 (7%)
Query: 10 AKAAEEFKFYLE-EYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRI 63
A A+E+F+ + E G++ G Y L I + T EK L+ + + +
Sbjct: 78 ALASEKFRRFQEFSVLGMRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLRN--ETAWM 135
Query: 64 DEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGIT 123
EI ++V DE H+++ P RGP LE +SK+ + S Q+ A+SAT+GN + L+ +++
Sbjct: 136 QEISVVVADEVHLIDSPDRGPTLEITLSKLRRMNPSCQVLALSATVGNADELAAWLDAEL 195
Query: 124 YVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVL 183
+ RPT E V + + K + + D + VL ++ L
Sbjct: 196 VLSEWRPTDLMEGVFYNGIFYCKDKEKPVGQPTKDE--------AVNLVLDTIKEGGQCL 247
Query: 184 IFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEE----NDGKLSTNLEECIL 239
+F SS+ C A + K+ E + + + +E ++ +S+ L C+
Sbjct: 248 VFESSRKNCMGFAKKA----VSAVKKTLSNEDRETLAGIADEIIENSETDVSSVLATCVR 303
Query: 240 YGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR-----DSYVG 294
G A+HHA LT R L+E + G ++II T TLAAG+NLPA+RVIIR S G
Sbjct: 304 SGTAFHHAGLTTPLRELVENGFREGRIKIISSTPTLAAGLNLPARRVIIRSYRRYSSDSG 363
Query: 295 RDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFL-RFSSMMNAGPEPISSHMDPP- 352
I + YKQM GRAGR L GE+++L K+ ++F+ F + AG E I S +
Sbjct: 364 MQPIPVLEYKQMAGRAGRPRLDPYGEAVLLAKSYEEFVFLFEKYIEAGAEDIWSKLGTEN 423
Query: 353 TLVDLILEVVAANLCSSLEDVKTLIKHTLF 382
L IL ++ + E++ ++ T F
Sbjct: 424 ALRTHILSTISNGFARTREELMDFLEATFF 453
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 167/647 (25%), Positives = 281/647 (43%), Gaps = 89/647 (13%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIG 55
+ +EKY + FK + E G+K G Y L I + T EK L
Sbjct: 83 LTNEKYNT-------FKDW--ETLGIKTGMTSGDYDTDDAWLENYDIIVTTYEKLDSLWR 133
Query: 56 SLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINAL 115
+ ++E+ V+DEFH LN+P+RGP +E V + KK + +SATI N +
Sbjct: 134 H--KAKWLNEVSYFVLDEFHYLNDPERGPTVESVAIRA---KKRGIVLGLSATISNGKEI 188
Query: 116 STFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAV--- 172
+ ++ N RP E + ++ K +Y DN + G DA+
Sbjct: 189 ANWLNAELVATNWRPVPLKEGIIYPEK-------KGFVVVYKDNTSRKVYGD--DAIIAY 239
Query: 173 -LHLVQGNLMVLIFCSSKIACSNLALRL-QFDRFPGTKEYKKQEKEDLIEALKEENDGKL 230
L +V VL+F SS+ N A ++ Q+ F ++ K E + +KE D
Sbjct: 240 TLDIVSKGGQVLVFRSSRKLAENTARKIVQYMNFVKLEDKKLLE---IARKIKEVEDAGS 296
Query: 231 ST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVII 288
+ +L +L GVAYHHA L+ G R +IE ++ L++I T TLAAGVNLPA+ V+I
Sbjct: 297 NEKEDLYNLVLRGVAYHHAGLSKGLRDIIESSFRDRILKVIVATPTLAAGVNLPARAVVI 356
Query: 289 RDSY------VG-RDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR-FSSMMNA 340
D Y VG D I + YKQM GRAGR G E+GE++++ + ++ + + + +
Sbjct: 357 GDIYRYNRKVVGYMDLIPVMDYKQMSGRAGRPGFDENGEAVVVVRNKREAEKVYERYLMS 416
Query: 341 GPEPISSHMDPPT-LVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTL 399
EPI S + + ++ ++A+ + E++ +K TL + + + ++ L+ L
Sbjct: 417 DVEPIESKLGSESAFYSFLISIIASEGEKTTEELMEYVKETLLPKELAKKYFRSGLDWLL 476
Query: 400 SEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLN 459
+ + ++ K ++LT + ++ + I L N+ C +
Sbjct: 477 QHDIFAEISDK-----------ITLTRFGRRISDLYINPFTAVTIREALEKNEKG-CEIA 524
Query: 460 SLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL 519
LH+ L Y I +SR AE + + L +
Sbjct: 525 YLHL------LAYTPDGPSIGVSR-----------------AEEDALIDELNCELFVDEP 561
Query: 520 KDEKKALLCRFFHAC----ILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYR 575
+DE + + A I+YD +N + + YGI + L+ ++ + Y
Sbjct: 562 EDEYE--FSNYISALKVAYIVYDWVNEIDEDTILGKYGIGSGDLRAIIDTMDWLTYSGYH 619
Query: 576 FCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQL 622
L EL +K +L +L + P L L+ +PG+ RAR L
Sbjct: 620 VASVL-ELKDHKDILEELHARVKDGVKPELIELVKIPGIGRVRARLL 665
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 189/395 (47%), Gaps = 36/395 (9%)
Query: 10 AKAAEEFKFYLEEYA-GVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRI 63
A A+E+F+ + E G+K G L I + T EK L+ + + +
Sbjct: 78 ALASEKFERFKELAPFGIKVGISTGDLDSRADWLGVNDIIVATSEKTDSLLRN--GTSWM 135
Query: 64 DEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGIT 123
DEI +V+DE H+L+ RGP LE ++K++ L +Q+ A+SAT+GN ++ ++
Sbjct: 136 DEITTVVVDEIHLLDSKNRGPTLEVTITKLMRLNPDVQVVALSATVGNAREMADWLGAAL 195
Query: 124 YVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVL 183
+ RPT E V + K + + D+ + VL ++ L
Sbjct: 196 VLSEWRPTDLHEGVLFGDAINFPGSQKKIDRLEKDD--------AVNLVLDTIKAEGQCL 247
Query: 184 IFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIE----ALKEENDGKLSTN--LEEC 237
+F SS+ C+ A + +K K + + +I+ A + E+ G+ T L C
Sbjct: 248 VFESSRRNCAGFA------KTASSKVAKILDNDIMIKLAGIAEEVESTGETDTAIVLANC 301
Query: 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR-----DSY 292
I GVA+HHA L + R+L+E + +++I T TLAAG+NLPA+RVIIR DS
Sbjct: 302 IRKGVAFHHAGLNSNHRKLVENGFRQNLIKVISSTPTLAAGLNLPARRVIIRSYRRFDSN 361
Query: 293 VGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRF-SSMMNAGPEPISSHMDP 351
G I + YKQM GRAGR L GES++L KT +F + + + A E I S +
Sbjct: 362 FGMQPIPVLEYKQMAGRAGRPHLDPYGESVLLAKTYDEFAQLMENYVEADAEDIWSKLGT 421
Query: 352 P-TLVDLILEVVAANLCSSLEDVKTLIKHTLF-YQ 384
L +L + S+ +++ T F YQ
Sbjct: 422 ENALRTHVLSTIVNGFASTRQELFDFFGATFFAYQ 456
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 181/372 (48%), Gaps = 32/372 (8%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G Y L I + T EK L+ + + + EI ++V+DE H+++ RGP LE
Sbjct: 102 GDYDRRDEGLGINDIIVATSEKTDSLLRN--ETAWMQEISVVVVDEVHLIDSADRGPTLE 159
Query: 88 CVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSF 147
++K+ + QI A+SAT+GN + L+ +++ + RPT E V D F
Sbjct: 160 VTLAKLRKMNPFCQILALSATVGNADELAAWLDAELVLSEWRPTDLMEGVFFDGTFFCK- 218
Query: 148 DGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGT 207
D + L E + +L VL ++ L+F SS+ C A + T
Sbjct: 219 DKEKLIEQPTKDEAINL-------VLDTLREGGQCLVFESSRKNCMGFAKK-------AT 264
Query: 208 KEYKK----QEKEDLI---EALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEA 260
KK ++KE L + + E ++ ++ L C+ G A+HHA LT+ R L+E
Sbjct: 265 SAVKKTLSAEDKEKLAGIADEILENSETDTASVLASCVRAGTAFHHAGLTSPLRELVETG 324
Query: 261 YLAGTLQIICCTSTLAAGVNLPAQRVIIR-----DSYVGRDFISLNMYKQMVGRAGRTGL 315
+ G +++I T TLAAG+NLPA+RVIIR S G I + YKQM GRAGR L
Sbjct: 325 FREGYVKLISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPRL 384
Query: 316 QESGESIMLCKTMQDFL-RFSSMMNAGPEPISSHMDPP-TLVDLILEVVAANLCSSLEDV 373
GE+++L K+ ++ L F + AG E I S + L +L ++ + E++
Sbjct: 385 DPYGEAVLLAKSYEELLFLFEKYIEAGAEDIWSKLGTENALRTHVLSTISNGFARTKEEL 444
Query: 374 KTLIKHTLF-YQ 384
++ T F YQ
Sbjct: 445 MDFLEATFFAYQ 456
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 207/425 (48%), Gaps = 26/425 (6%)
Query: 14 EEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENR--IDEIGLIVI 71
EEF+ Y + G Y L K I + T EK + SL++ + I+++ +V
Sbjct: 89 EEFEQYGLDIGVSTGNYESEGGWLADKDIVVATSEK----VDSLVRNDAPWIEDLTCVVT 144
Query: 72 DEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPT 131
DE H++++ +RGP LE ++K+ L +Q A+SATIGN AL+T+++ + RP
Sbjct: 145 DEVHLVDDGERGPTLEVTLAKLRRLNPDLQTVALSATIGNAEALATWLDAGLVDSDWRPI 204
Query: 132 KHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIA 191
+ V + DG +N + V ++ + L+F +S+
Sbjct: 205 DLQKGVHY-GQALHLEDGSQQRLSVQNNEKQTAA-----IVRDTLEDDGSTLVFVNSRRN 258
Query: 192 CSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTA 251
A RL P ++ + D+ E +++ +D + S +L + + G A+HHA L+
Sbjct: 259 AEAAAGRLANTVRPHLSTEERDQLADIAEEIRDVSDTETSDDLADAVADGAAFHHAGLSR 318
Query: 252 GERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR------DSYVGRDFISLNMYKQ 305
G R L+E+A+ ++++C T TLAAGVN P++RV++R S G +S+ Q
Sbjct: 319 GHRELVEDAFRDRLVKVVCATPTLAAGVNTPSRRVVVRDWRRYDGSAGGMAPLSVLEVHQ 378
Query: 306 MVGRAGRTGLQESGESIMLCKTMQDFLR-FSSMMNAGPEPISSHMDP-PTLVDLILEVVA 363
M+GRAGR GL GE++++ + + F + A PEP+ S + P L IL VA
Sbjct: 379 MMGRAGRPGLDPYGEAVLIASSHDEVDELFERYVWADPEPVRSKLAAEPALRTHILATVA 438
Query: 364 ANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLS 423
+ S + + ++ TL+ S D LE + +++ L + L + EAG L
Sbjct: 439 SGFARSRKGLLEFLEQTLY---ASQTDDSGQLERVVDDVLTYL--QRNDFLEI-EAGELD 492
Query: 424 LTSIA 428
TS+
Sbjct: 493 ATSLG 497
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 182/693 (26%), Positives = 302/693 (43%), Gaps = 91/693 (13%)
Query: 14 EEFKFYLEEYA---GVK-GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENR--IDEIG 67
EEF + EEY GV G Y T L K I + T EK + SL++ ID++
Sbjct: 86 EEFAAF-EEYGLSVGVTTGSYEDTGEWLADKDIIVATSEK----VDSLVRNGAPWIDDLD 140
Query: 68 LIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVEN 127
+V DE H++++ RGP LE ++K+ + ++Q+ A+SAT+GN ++ +++ +
Sbjct: 141 CVVADEVHLVDDEHRGPTLEVTLAKLRRVNPNLQVVALSATVGNAGEMAEWLDAELVDSS 200
Query: 128 SRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLH--LVQGNLMVLIF 185
RP + + V + DG L T +AV+ L +G L+F
Sbjct: 201 WRPIELRKGVHY-GQALHFGDGTQ------QELPVQRTEKPTEAVVRETLDEGG-STLVF 252
Query: 186 CSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYH 245
+S+ A RL G ++ L E ++ +D + S +L +C+ G A+H
Sbjct: 253 VNSRRNAEGAAKRLAKTTVDGLDADERAALSSLAEEIRAVSDTETSDDLADCVEQGAAFH 312
Query: 246 HADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV------GRDFIS 299
HA ++ R L+E+A+ ++ IC T TLAAGVN PA+RV++RD G +S
Sbjct: 313 HAGCSSEHRSLVEDAFRDRLIKTICATPTLAAGVNTPARRVVVRDWRRYSGDAGGMQPLS 372
Query: 300 LNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR-FSSMMNAGPEPISSHM-DPPTLVDL 357
+ QM+GRAGR G GE+++L + + + A PEP+ S + P++
Sbjct: 373 VLEVHQMMGRAGRPGRDPYGEAVLLADSHDELDELLDRYVWADPEPVESKLAREPSMRTH 432
Query: 358 ILEVVAANLCSSLEDVKTLIKHTLF---YQLKSPEDQ-QTFLETTLSEI-VASLLASKGT 412
+L VA+ S + + + TL+ Y+ ED + ++TTLS + + G
Sbjct: 433 LLATVASGFADSRSALLSFLDRTLYATQYRHGDGEDNLERVVDTTLSYLETNGFIDRDGD 492
Query: 413 MLTMNEAGH----LSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVI 468
+ + GH L L ++ A + GL+ L+ L
Sbjct: 493 AIEATDLGHTVSRLYLDPMSAAEIIDGLADAASPTAM--------------GLYQLVART 538
Query: 469 PLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLC 528
P Y L RS + YT + R AE LG L + G+ +D AL
Sbjct: 539 PDMYE------LYLRSGDREEYTMLAYE--REAELLG---ELPSEFEEGRFEDWLSALKT 587
Query: 529 RFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQ 588
A +L D + + +A+ YG+ ++ ++ + E Q
Sbjct: 588 ----ARMLEDWASELDEDDIAERYGVGPGDIRGKVDTAEWLLGAAESLASE--------Q 635
Query: 589 LLTDLPQTLMYCRAPNLRA-------LMDLPGVK-IG--RARQLLNAGYSSLELIARADA 638
L D+ R R L+DL GV+ +G RAR+L +AG + + AD
Sbjct: 636 DLADVSA----IREARKRVEHGVGEELIDLAGVRGVGRKRARRLYDAGIETRADLRNADK 691
Query: 639 KEMVAKIRHLPLRSARNLISAAKLHFITKMDKV 671
++A +R ++A N++ AA H +MD V
Sbjct: 692 SVVLAALRGRE-QTAENVLEAAG-HQQPEMDGV 722
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/371 (29%), Positives = 175/371 (47%), Gaps = 36/371 (9%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G Y T + + + I T EK L+ ++E+GL+VIDE HM+ + RGP LE
Sbjct: 100 GNYDDTPDFIKRYDVVILTSEKADSLMHH--DPYMMEEVGLMVIDEIHMIGDEYRGPTLE 157
Query: 88 CVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSF 147
V++ Y+ +I A+SAT+ N + ++ ++ + RP + R+F
Sbjct: 158 TVITTARYVNPETRIIALSATVSNASEIAEWLNASLIKSSFRPVPLKVGILYRNRLFLDG 217
Query: 148 DGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQ--FDRFP 205
D +S +I NL V V VLIF SS+ ++A L FD
Sbjct: 218 DARSDVDI---NL----------LVKETVDDGGQVLIFVSSRKRAEDMAKNLSQLFDPIN 264
Query: 206 GTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGT 265
K + E+ L E + +GV++HHA L+ +R IE+A+
Sbjct: 265 DLK-------------VSSEDANVYDDLLNEMLPHGVSFHHAGLSNEQRSFIEKAFRHRK 311
Query: 266 LQIICCTSTLAAGVNLPAQRVIIRD----SYVGRDFISLNMYKQMVGRAGRTGLQESGES 321
L++I T TLAAGVNLPA+ VI++D +G ++S KQM+GRAGR G + G
Sbjct: 312 LKVIVATPTLAAGVNLPARLVIVKDVTRYGDLGITYLSNMEVKQMIGRAGRPGYDQYGIG 371
Query: 322 IMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDL-ILEVVAANLCSSLEDVKTLIKHT 380
I+ + + ++ PEP+ S++ P V L +A L +S +++ + T
Sbjct: 372 IIYAASANSYQVVKEYISEEPEPVDSYIGKPEKVRFNTLAAIAMGLATSQVEMEEFYRST 431
Query: 381 LFYQLKSPEDQ 391
FY ++ ED+
Sbjct: 432 -FYYAQNGEDE 441
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 171/355 (48%), Gaps = 25/355 (7%)
Query: 37 LNKKSIYICTIEKGSKLIGSLIQEN--RIDEIGLIVIDEFHMLNEPQRGPILECVVSKVL 94
L K I + T EK + SL++ I +I L+VIDE H+++ P RGP LE V++K+
Sbjct: 108 LGKNDIIVATSEK----VDSLLRNGARWIPDITLVVIDEIHLIDSPDRGPTLEMVIAKMR 163
Query: 95 YLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTE 154
+Q+ +SATIGN L+ +++ + RP + V D R+ + + + +
Sbjct: 164 SKNPGMQLIGLSATIGNPKVLAGWLDAELVTSSWRPVDLRQGVFYDNRIQFAERMRPVKQ 223
Query: 155 IYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQE 214
+ + D +L L + L+F SS+ A R G + +
Sbjct: 224 VSKNYDDLNL-------CLDTIAEGGQCLVFVSSRRNAEAFA-----KRAAGAIKSEDAA 271
Query: 215 KEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTST 274
E L E ++ L C+ G A+HHA L+ ER ++EEA+ L+ I T T
Sbjct: 272 LAACAERLLEGTPTEMVKTLAACVAKGAAFHHAGLSRKERSIVEEAFRKNLLKCISSTPT 331
Query: 275 LAAGVNLPAQRVIIRD-----SYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQ 329
LAAG+NLPA+RVIIRD + G I ++ Y+QM GRAGR L GE++++ K +
Sbjct: 332 LAAGLNLPARRVIIRDYLRFSAGEGMQPIPVSEYRQMAGRAGRPRLDPYGEAVLIAKEAE 391
Query: 330 DFLR-FSSMMNAGPEPISSHMDPPT-LVDLILEVVAANLCSSLEDVKTLIKHTLF 382
F + A E + S + PT L +L +VA+ + ++ + + +
Sbjct: 392 QVPELFEVYIEAEAEDVHSRIAEPTALYTHVLSLVASGFAGTRGELTEFMNRSFY 446
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 180/658 (27%), Positives = 292/658 (44%), Gaps = 84/658 (12%)
Query: 10 AKAAEEFK-FYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLI--GSLIQEN 61
A A E+FK F E G+K G Y L I I T EK L+ GS +
Sbjct: 79 ALAEEKFKEFKDWEELGLKVAMATGDYDSKDEWLGGYDIIIATAEKFDSLLRHGS----S 134
Query: 62 RIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEG 121
I + ++V+DE H++ RG LE +++++L QI +SATIGN L+ ++
Sbjct: 135 WIRNVKVLVVDEIHLIGSRDRGATLEFIITQML---NRAQIIGLSATIGNPEELAEWLNA 191
Query: 122 ITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLM 181
+ RP K V VF DGK TE + S + V ++ +
Sbjct: 192 KLIKSDWRPVKLRRGVFYQGFVFWE-DGK--TEKF---------NSWEELVYDAIKRSKG 239
Query: 182 VLIFCSSKIACSNLALRL--QFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECIL 239
L+F + + AL L + F KE + E ++L E+L EEN + L + +
Sbjct: 240 SLVFVNMRRKAEKTALELSKKIRNFLTKKELR--ELKELAESL-EEN--PTNEKLAKALQ 294
Query: 240 YGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY----VGR 295
GVA+HHA L ER L+EE + G ++++ T TL+AG+N PA RVI+RD++ G
Sbjct: 295 GGVAFHHAGLGREERVLVEENFKKGLIKVVVATPTLSAGINTPAFRVIVRDTWRYSEFGM 354
Query: 296 DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHM-DPPTL 354
+ I + +QM+GRAGR E GE+I++ T + + PE + S + + L
Sbjct: 355 ERIPILEIQQMMGRAGRPKYDEVGEAIIVSTTEEPSTVMERYIKGKPEKLFSQLSNESIL 414
Query: 355 VDLILEVVAANLCSSLEDVKTLIKHTLF-YQLKSPEDQQTFLETTLSEIVASLLASKGTM 413
IL ++A SS ++ ++ T + YQ K P LE + +IV LL ++
Sbjct: 415 RGQILALIATFNFSSFREIYDFLERTFYAYQGKDP----YTLEDRIRDIVYFLLENEFIE 470
Query: 414 LTMNEAGHLSLTSIAKAAVQAGLSHD-VCLIIYSDLLHN-KLNFCLLNSLHMLFL---VI 468
+T+++ + ++ A L D + I+ D L + + L LH++ L +I
Sbjct: 471 ITLDD----EIKALPLGIRTAKLYIDPMTAKIFKDTLPKIEKDPNPLGILHVISLTPDLI 526
Query: 469 PLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLC 528
PL Y +L D Y F + L +DE+K L
Sbjct: 527 PLPYGKKELPML------EDEYYSFKDR----------------LYFELDWEDERKFLRA 564
Query: 529 RFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQ 588
F A +L +N ++ + + ++ + + + VY +E+ + Y Q
Sbjct: 565 -FKTALVLNAWINEVPEGEIVEKFNVEPGDIYRIVETAEWL---VYS-LKEIAKTLEYSQ 619
Query: 589 LLTDLPQTLMYCRAPNLR----ALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMV 642
+ + +TL +R LM+LP + RAR L NAG+ LE I A E++
Sbjct: 620 DVINYLETLRVRVKHGIREELIPLMELPMIGRKRARALYNAGFRDLESIKNARPAELL 677
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 178/674 (26%), Positives = 281/674 (41%), Gaps = 116/674 (17%)
Query: 10 AKAAEEFK-FYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLI--GSLIQEN 61
A A E+F+ F E G+K G Y L K I I T EK L+ GS +
Sbjct: 79 ALAEEKFREFKDWERLGLKVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGS----S 134
Query: 62 RIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEG 121
I ++ ++VIDE H++ RG LE +++++L QI +SATIGN L+ ++
Sbjct: 135 WIRDVKMLVIDEIHLIGSRDRGATLEFIITQML---GRAQIIGLSATIGNPEELAEWLNA 191
Query: 122 ITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLM 181
+ RP K + V VF DG S + L Y G A
Sbjct: 192 KLIRSDWRPVKLRKGVFYQGFVFWE-DGGSERYNSWEELVYDAVKKGKGA---------- 240
Query: 182 VLIFCSSKIACSNLALRL--QFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECIL 239
L+F + + AL L + + KE + E +L E+L EEN + L + +L
Sbjct: 241 -LVFVNMRRKAEKTALELAKKVKNYLDRKELR--ELRELAESL-EEN--PTNEKLAKALL 294
Query: 240 YGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY----VGR 295
GVA+HHA L ER L+E+ + G ++++ T TL+AG+N PA RVIIRD++ G
Sbjct: 295 SGVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIRDTWRYSEFGM 354
Query: 296 DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLV 355
+ I + +QM+GRAGR E GE+I++ T + L + PE + S + +++
Sbjct: 355 ERIPVLEVQQMMGRAGRPRYDEVGEAIIVSTTEEPSLVIDHYIKGKPEKLFSQLSNESIL 414
Query: 356 -DLILEVVAANLCSSLEDVKTLIKHTLF-YQLKSPEDQQTFLETTLSEIVASLLASKGTM 413
IL ++A S +++ ++ T + +Q K P LE + I+ LL ++
Sbjct: 415 RSQILALIATFGYSEFKEIYDFLERTFYAHQGKDP----YMLEEKIRRIIYFLLENEFIE 470
Query: 414 LTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYR 473
+T+ + + + + + I L + N L HM+ L
Sbjct: 471 VTLED--EIKPLPLGVRTTKLYIDPMTAKIFKDTLPRIEKNPNPLGIFHMISLA------ 522
Query: 474 IPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHA 533
D LS SK T L+DE +L+ R
Sbjct: 523 --PDLTPLSYSK----------------------------RETSMLEDEYYSLMDR---- 548
Query: 534 CILYDVLNFDNHQKVAKMYG-----------IQNSHLQNFLNVTSYFASKVYRFCE---- 578
LY L+++N +K + + + + NV +YR E
Sbjct: 549 --LYFELDYENERKFFRAFKTALVLNAWINEVPEGEIVERFNVEP---GDIYRIVETAEW 603
Query: 579 ------ELPELWCYKQLLTDLPQTLMYCRAPNLR----ALMDLPGVKIGRARQLLNAGYS 628
E+ ++ Q + D TL +R LM+LP V RAR L NAG+
Sbjct: 604 LIYSLGEIAKVLEASQEVVDYVNTLRLRVKHGIREELIPLMELPMVGRKRARALYNAGFK 663
Query: 629 SLELIARADAKEMV 642
LE I A E++
Sbjct: 664 DLESIRNAKPSELL 677
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 140 bits (353), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 118/362 (32%), Positives = 172/362 (47%), Gaps = 31/362 (8%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+ +EKY + K E F + A G Y L I I T EK L +
Sbjct: 80 LTNEKYLTF-KDWESIGF---KVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRH--RP 133
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
+ ++E V+DE H LN+P+RGP++E V + K + A+SATI N ++ ++
Sbjct: 134 DWLNEANYFVLDELHYLNDPERGPVVESVTIRA----KRRNLLALSATISNYKQIAKWLG 189
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAV----LHLV 176
N RP E V +R K T ++ DN + G DA+ L +
Sbjct: 190 AEPVATNWRPVPLMEGVMYPER-----KKKEYTILFRDNTARKVHGD--DAIIAYTLDSL 242
Query: 177 QGNLMVLIFCSSKIACSNLALRL-QFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLE 235
N VL+F +S+ + AL++ + F E E ++ + EE L+
Sbjct: 243 SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDEKAISEILKQLDDI-EEGGSDEKELLK 301
Query: 236 ECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY--- 292
I GVAYHHA L+ R +IEE++ +++I T TLAAGVNLPA+ VII D Y
Sbjct: 302 SLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATPTLAAGVNLPARTVIIGDIYRFN 361
Query: 293 ---VG-RDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR-FSSMMNAGPEPISS 347
VG D I + YKQM GRAGR G + GESI++ + +D R F + + EPI S
Sbjct: 362 RKIVGYYDEIPVMEYKQMSGRAGRPGFDQIGESIIVVRDKEDVDRVFKKYILSDVEPIES 421
Query: 348 HM 349
+
Sbjct: 422 KL 423
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 187/378 (49%), Gaps = 52/378 (13%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G + R+L++ + + T EK L+ + N + +G++V+DE H L +P+RGP+LE
Sbjct: 101 GDFDSDDRRLHEFDVVVVTYEKLDSLLRH--RPNWLGLVGVVVVDEIHYLGDPRRGPVLE 158
Query: 88 CVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENS-RPTKHSEYVTVDKRVFQS 146
+V+K+ +L Q +SAT+GN ++ ++ G VE+S RP E V V +
Sbjct: 159 SIVAKLRHLGLKTQFIGLSATVGNAGEVAAWL-GARLVESSWRPVPLREGVY-HGGVIRF 216
Query: 147 FDGKSLTEIYA-DNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFP 205
DG S+ + A + + +L + V G L+F +S+ + LA +
Sbjct: 217 SDG-SMQRVNAPGDAEVALA-------VDAVAGGGQALVFTNSRSSTVRLAKAVA----- 263
Query: 206 GTKEYKKQEKEDLI---------EALKEENDGKLSTNLEECILYGVAYHHADLTAGERRL 256
K E L+ E LK + + L + + GVA+H+A L RRL
Sbjct: 264 -----KAMEAAGLVPRGAKALAEEVLKASSSKIIGRELADLVARGVAFHNAGLELEVRRL 318
Query: 257 IEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR-----DSYVGRDFISLNMYKQMVGRAG 311
+E+ + G L+++ T+TLAAGVNLPA+RV++ D +GR+ I + Y+QM GRAG
Sbjct: 319 VEDGFRRGLLKVVVSTTTLAAGVNLPARRVVVADYERFDPALGREEIPVLEYRQMAGRAG 378
Query: 312 RTGLQESGESIMLCKT-------MQDFLRFSSMMNAGPEPISSH-MDPPTLVDLILEVVA 363
R GL GE++++ ++ M+ ++R E + SH + P L +L V
Sbjct: 379 RPGLDPYGEAVLVARSKGEAEYLMERYVRGQV------EGVRSHILAEPNLRAHVLGAVG 432
Query: 364 ANLCSSLEDVKTLIKHTL 381
SL+D+ +TL
Sbjct: 433 GGYAKSLDDLVDFFSNTL 450
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 171/369 (46%), Gaps = 47/369 (12%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G Y + + + I T EK L+ ++++GL+V+DE H + + RGP LE
Sbjct: 100 GDYDDSPDFIKRYDAVILTSEKADSLLHH--DPYILNDVGLLVLDEIHTIGDESRGPTLE 157
Query: 88 CVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSF 147
V S Y+ ++I A+SAT+ N L+++++ + RP + +++
Sbjct: 158 TVASIARYVNPDVRILALSATVSNAMELASWLDASLIKSDFRPVPLKTGILYRDQLY--L 215
Query: 148 DGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGT 207
DGK + + + + + V+ N VL+F SS+ + A
Sbjct: 216 DGKRRSGVSINQI-----------IRETVEDNGQVLMFVSSRKKAEDTA----------- 253
Query: 208 KEYKKQEKEDLIEALKEENDGKLSTN--------LEECILYGVAYHHADLTAGERRLIEE 259
DL + + + K+S++ L E + GVA+HHA L+ +R IE
Sbjct: 254 --------RDLAQIFGSDANIKISSDETNVYDDMLNEILPRGVAFHHAGLSNDQRAFIER 305
Query: 260 AYLAGTLQIICCTSTLAAGVNLPAQRVIIRD-SYVGRDFISL--NM-YKQMVGRAGRTGL 315
+ A +++I T TLAAGVNLPA+ VI+RD + G D IS NM KQM+GRAGR G
Sbjct: 306 EFRARRIKVIVATPTLAAGVNLPARLVIVRDITRWGSDGISYLTNMEIKQMIGRAGRPGY 365
Query: 316 QESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDL-ILEVVAANLCSSLEDVK 374
+ G ++ + + ++ PEP+ S++ V L ++ L S D+
Sbjct: 366 DQYGIGLIYVSSQSSYEAAKDYLSTDPEPVVSYLGNEAKVRFNTLAAISMGLARSPSDIM 425
Query: 375 TLIKHTLFY 383
+ TLF+
Sbjct: 426 KFYETTLFF 434
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/388 (27%), Positives = 184/388 (47%), Gaps = 34/388 (8%)
Query: 13 AEEFKFYLEEYA---GVK-GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENR--IDEI 66
A+EF+ + E + GV G Y +L I + T EK + SL++ ID++
Sbjct: 94 AQEFEAF-ERFGLSVGVSTGNYERDGARLADNDIVVATSEK----VDSLVRNGAGWIDDL 148
Query: 67 GLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVE 126
+V DE H++++ RGP LE ++K+ +Q+ A+SAT+GN L+ +++
Sbjct: 149 SCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADLQVVALSATVGNAGELAAWLDAELVDS 208
Query: 127 NSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLT-GSGPDA---VLHLVQGNLMV 182
+ RP ++ R + G+SL Y D L+ GSG V + +
Sbjct: 209 DWRP--------IELRTGVHY-GQSLH--YDDGTQAELSVGSGSQTAAVVADTLADDGST 257
Query: 183 LIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGV 242
L+F +S+ A RL +++ D+ ++ +D + S L + + G
Sbjct: 258 LVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEIRGVSDTETSDELADAVASGA 317
Query: 243 AYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRD------SYVGRD 296
A+HHA L R L+EEA+ ++ + T TLAAGVN PA+RV++RD + G
Sbjct: 318 AFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGTAGGMQ 377
Query: 297 FISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR-FSSMMNAGPEPISSHMDP-PTL 354
+ + QM GRAGR GL GE+++L + + F + A PEP+ S + P L
Sbjct: 378 PLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYVYADPEPVRSKLAAEPAL 437
Query: 355 VDLILEVVAANLCSSLEDVKTLIKHTLF 382
+L +A ++ + + + TL+
Sbjct: 438 RTHVLAAIATGFTTTEDGLHEFLGGTLY 465
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/388 (27%), Positives = 184/388 (47%), Gaps = 34/388 (8%)
Query: 13 AEEFKFYLEEYA---GVK-GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENR--IDEI 66
A+EF+ + E + GV G Y +L I + T EK + SL++ ID++
Sbjct: 94 AQEFEAF-ERFGLSVGVSTGNYERDGARLADNDIVVATSEK----VDSLVRNGAGWIDDL 148
Query: 67 GLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVE 126
+V DE H++++ RGP LE ++K+ +Q+ A+SAT+GN L+ +++
Sbjct: 149 SCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADLQVVALSATVGNAGELAAWLDAELVDS 208
Query: 127 NSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLT-GSGPDA---VLHLVQGNLMV 182
+ RP ++ R + G+SL Y D L+ GSG V + +
Sbjct: 209 DWRP--------IELRTGVHY-GQSLH--YDDGTQAELSVGSGSQTAAVVADTLADDGST 257
Query: 183 LIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGV 242
L+F +S+ A RL +++ D+ ++ +D + S L + + G
Sbjct: 258 LVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEIRGVSDTETSDELADAVASGA 317
Query: 243 AYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRD------SYVGRD 296
A+HHA L R L+EEA+ ++ + T TLAAGVN PA+RV++RD + G
Sbjct: 318 AFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGTAGGMQ 377
Query: 297 FISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR-FSSMMNAGPEPISSHMDP-PTL 354
+ + QM GRAGR GL GE+++L + + F + A PEP+ S + P L
Sbjct: 378 PLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYVYADPEPVRSKLAAEPAL 437
Query: 355 VDLILEVVAANLCSSLEDVKTLIKHTLF 382
+L +A ++ + + + TL+
Sbjct: 438 RTHVLAAIATGFTTTEDGLHEFLGGTLY 465
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 180/365 (49%), Gaps = 37/365 (10%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGV-KGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQ 59
+ EKY + K E+ F + GV G Y L I + T EK + SL +
Sbjct: 83 LTSEKYSTF-KDWEKLGFKV----GVTSGDYDTDDPWLRNFDIIVTTYEK----LDSLWR 133
Query: 60 EN--RIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALST 117
+ + +I V+DEFH +N+ RGP++E V + K+ I A+SATIGN ++
Sbjct: 134 HSAEWLKDIDYFVLDEFHYMNDGDRGPVVEGVAVRA---KRQGTILALSATIGNAKDVAK 190
Query: 118 FIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGP--DAVLHL 175
++ N RP V + + V S K +Y+D L G P L +
Sbjct: 191 WLNADIVATNWRP------VPLKEGVMYSEGKKGHIILYSDGTTNKLKGDDPIIAYTLDI 244
Query: 176 VQGNLMVLIFCSSKIACSNLALRL-QFDRFPGTKEYKKQEKEDLIEALKE--ENDGKLST 232
+ V++F SS+ A+++ Q+ F + K E + I+ +++ N+ ++
Sbjct: 245 LSKGGQVIVFRSSRKYAETTAMKISQYMNFVKLDDKKLLETAERIKEVEDAGSNEKEVLY 304
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY 292
NL I+ GVA+HHA L+ G R +IE ++ +++I T TLAAGVNLPA+ V+I D Y
Sbjct: 305 NL---IVRGVAFHHAGLSKGLRDIIEASFRERIIKVITATPTLAAGVNLPARAVVIGDIY 361
Query: 293 ------VG-RDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR-FSSMMNAGPEP 344
VG + IS Y+QM GRAGR G GE+I+L ++ + + +++ EP
Sbjct: 362 RFNRKIVGFTEMISTMEYRQMSGRAGRPGYDNHGEAIILVRSKVEVDKVIDKYLHSDIEP 421
Query: 345 ISSHM 349
I S +
Sbjct: 422 IESKL 426
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 126 bits (316), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 189/399 (47%), Gaps = 46/399 (11%)
Query: 10 AKAAEEFKFYLEEYA--GVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQEN- 61
A A+E+F + ++Y G+K G Y TK L+K +I I T EK + SL++ N
Sbjct: 77 ALASEKFDEFQKKYETYGIKVGMSIGDYD-TKEDLSKYNIIITTSEK----LDSLMRHNI 131
Query: 62 -RIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
I ++ L VIDE H++ + +RG LE +++K+ + + QI +SAT+GN ++ ++
Sbjct: 132 EWIKDLSLAVIDEIHLIGDNERGGTLEVILTKLKNI--NAQIVGLSATVGNPEEIANWLN 189
Query: 121 GITYVENSRPTK-------HSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVL 173
+ RP + +E ++ + Q K++ I +NL D ++
Sbjct: 190 AKLVTDEWRPVELKKGIYLENEINYINNQDSQKKSFKAVKSISRNNL--------TDLIV 241
Query: 174 HLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKE-----ENDG 228
V LIFC+SK + + TK K E DL +E E
Sbjct: 242 DSVNEKGSCLIFCNSKRNAVGESKKHNL-----TKYLSKAELNDLNSISEEILSILETPT 296
Query: 229 KLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLP--AQRV 286
+ +L ECI GVA+HHA LT R+ +EE + +++ICCT TL+AG+NLP +
Sbjct: 297 ETCKSLSECIKKGVAFHHAGLTYQHRKAVEEGFRNKVIKVICCTPTLSAGLNLPCRRAII 356
Query: 287 IIRDSYVGRDFISLNMYK--QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEP 344
Y I + + Q +GRAGR GL GE I+L K +D + + E
Sbjct: 357 RDIRRYSQNGLIDIPKLEIHQCIGRAGRPGLDPYGEGIILAKNEKDVEKAFLALTGPLEN 416
Query: 345 ISSHMDPPTLVDL-ILEVVAANLCSSLEDVKTLIKHTLF 382
I S + ++ + IL ++A S ++ IK+T +
Sbjct: 417 IYSKLSNQKVLRVHILGLIATLEIKSTSELINFIKNTFY 455
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 109/371 (29%), Positives = 169/371 (45%), Gaps = 38/371 (10%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLI--GSLIQENRIDEIGLIVIDEFHMLNEPQRGPI 85
G Y L K I I T EK L+ GS + I ++ ++V DE H++ RG
Sbjct: 103 GDYDSKDEWLGKYDIIIATAEKFDSLLRHGS----SWIKDVKILVADEIHLIGSRDRGAT 158
Query: 86 LECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQ 145
LE +++ +L QI +SATIGN L+ ++ V + RP K V +Q
Sbjct: 159 LEVILAHML---GKAQIIGLSATIGNPEELAEWLNAELIVSDWRPVKLRRGV-----FYQ 210
Query: 146 SFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFP 205
F + ++ S + V ++ LIF + + +AL L
Sbjct: 211 GF-------VTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALEL------ 257
Query: 206 GTKEYKKQEKEDLIEALKEENDG----KLSTNLEECILYGVAYHHADLTAGERRLIEEAY 261
+K+ K + I AL E D + L + I GVA+HHA L ER L+EE +
Sbjct: 258 -SKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316
Query: 262 LAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDF----ISLNMYKQMVGRAGRTGLQE 317
G ++ + T TL+AG+N PA RVIIRD + DF I + QM+GRAGR E
Sbjct: 317 RKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDE 376
Query: 318 SGESIMLCKTMQDFLRFSSMMNAGPEPISSHM-DPPTLVDLILEVVAANLCSSLEDVKTL 376
GE I++ + + + PE + S + + L +L ++A S++E++
Sbjct: 377 VGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKF 436
Query: 377 IKHTLF-YQLK 386
I +T + YQ K
Sbjct: 437 ISNTFYAYQRK 447
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/466 (25%), Positives = 217/466 (46%), Gaps = 65/466 (13%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G + T+ Q+ + +CT EK + + + + L++IDE H+L++ +RGP+LE
Sbjct: 571 GDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHD-ERGPVLE 629
Query: 88 CVVSKVLY----LKKSIQIFAMSATIGNINALSTFI-----EGITYVENS-RPTK-HSEY 136
+V++ + ++ +++ +SAT+ N ++TF+ +G+ Y +NS RP +Y
Sbjct: 630 ALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQY 689
Query: 137 VTV-DKRVFQSFDGKSLTEI-YADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSN 194
+ V +K+ + F + + EI Y ++++ G VL+F S+
Sbjct: 690 IGVTEKKALKRF--QVMNEIVYEKTMEHA--------------GRNQVLVFVHSRKETGK 733
Query: 195 LA-----LRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADL 249
A + L+ D +E +E L+ E + +T L+E + YG A HHA +
Sbjct: 734 TARAVRDMCLEQDTLGSFL----KEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGM 789
Query: 250 TAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV-----GRDFISLNMYK 304
T +R L+E+ + +Q++ T+TLA GVNLPA VII+ + V GR ++ L+
Sbjct: 790 TRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGR-WVELSALD 848
Query: 305 --QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVV 362
QM+GRAGR GE I++ T L+F + PI S L D++ +
Sbjct: 849 VLQMLGRAGRPQYDTKGEGILI--TNHSELQFYLSLLNQQLPIESQF-ISKLPDMLNAEI 905
Query: 363 AANLCSSLEDVKTLIKHTLFY--QLKSPE---------DQQTFLETTLSEIV---ASLLA 408
L+D + +T Y L++P LE ++++ A L
Sbjct: 906 VLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGVSHDAIKADPLLEQHRADLLHTAACCLE 965
Query: 409 SKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLN 454
G + + GH +T + + A L+H+ ++ Y+ LL L+
Sbjct: 966 RSGLIKYDRKTGHFQVTDLGRIASHYYLTHE-TMLTYNQLLKQTLS 1010
Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 155/339 (45%), Gaps = 57/339 (16%)
Query: 39 KKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYL-- 96
K + I T +K L Q + + L ++DE ++ + GP+LE V S++ Y+
Sbjct: 1420 KGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVG-GEEGPVLEIVCSRMRYISS 1478
Query: 97 --KKSIQIFAMSATIGNINALSTFI-----EGITYVENSRPTKHSEYVTVDKRVFQSFDG 149
+K I+I A+SA++ + ++ ++ + + RP ++ G
Sbjct: 1479 QIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHIQ----------G 1528
Query: 150 KSLTEIYADNLDYSLTGSGP--DAVLHLVQGNLMVLIFCSSKIACSNLALR--------L 199
++T N T S P +A+L + V++F SS+ A+ L
Sbjct: 1529 YNVTH----NATRIATMSKPVYNAILKY-SAHKPVIVFVSSRKQARLTAIDVLTYAASDL 1583
Query: 200 QFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEE 259
Q +RF +E ED+ L+ D L+E + GVAY H L+A + RL+E+
Sbjct: 1584 QPNRFFHAEE------EDIKPFLERMTD----KTLKETLAQGVAYLHEGLSASDHRLVEQ 1633
Query: 260 AYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRDFISLNMYK-----QMVGRAGR 312
+ +G +Q+ + L G+++ A VII D+ Y G++ S Y QM+GRA R
Sbjct: 1634 LFDSGAVQVAVISRDLCWGMSISAHLVIIMDTQFYNGKNH-SYEDYPITDVLQMIGRANR 1692
Query: 313 TGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPISSHMD 350
+ +++C+ + +DF F +N P PI SH+D
Sbjct: 1693 PNEDADAKCVLMCQSSKKDF--FKKFINE-PLPIESHLD 1728
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 172/352 (48%), Gaps = 56/352 (15%)
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
N + E+ L+++DEFHM+ E RGP++E +++ L S++I A+SAT+ N++ ++ +++
Sbjct: 122 NILREVDLLIVDEFHMIGEYTRGPVIESAITRARTLNPSVRIVALSATLSNMDEIAGWLD 181
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTG--SGPDAVLHLVQG 178
+ RP ++ + LD + G D VL +++
Sbjct: 182 ARVVEHDYRPVP----------------------LHREVLDTEMFGVREKNDVVLKVLER 219
Query: 179 NL----MVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKE---------E 225
+L L F S++ +LA L D+ G + +D++E+ +E +
Sbjct: 220 SLEDGSQTLAFVSTRRFTESLASHLA-DKISG------KIPDDMVESFREVAGKVLEVPK 272
Query: 226 NDGKLSTN----LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNL 281
+ G T+ L EC+ G+A+HHA L +R +IE+ + G + +I T +L GVNL
Sbjct: 273 SRGSPPTSTCLKLAECLEAGIAFHHAGLFNRQREIIEDEFRDGNILMITATPSLMYGVNL 332
Query: 282 PAQRVIIRD----SYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSM 337
P++ V+IRD + G I + Y+QM GRAGR ++G S ++ ++ + +
Sbjct: 333 PSRTVVIRDYTRWTSQGPRRIPVFDYEQMSGRAGRPQYDDAGYSYLIARSHDEAMDLEEY 392
Query: 338 MNAGP-EPISSHM--DPPTLVDLILEVVAANLCSSLEDVKTLIKHTLF-YQL 385
G E +S + + L I+ VA+ L + E++ ++T + YQ+
Sbjct: 393 YIRGEVERTTSRIIENRDALYRQIIAQVASGLSGTTEELADFFRNTFYGYQM 444
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 123/473 (26%), Positives = 222/473 (46%), Gaps = 64/473 (13%)
Query: 24 AGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRG 83
A + G TK+Q+++ I + T EK + + ++ + L++IDE H+L++ +RG
Sbjct: 606 AELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHLLHD-ERG 664
Query: 84 PILECVVSKVLYLKKS----IQIFAMSATIGNINALSTFI-----EGITYVENS-RPTK- 132
P+LE +V+++ ++ +++ +SAT+ N +++F+ +G+ Y +++ RP
Sbjct: 665 PVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPL 724
Query: 133 HSEYVTV-DKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIA 191
E++ + +K F+ + Y + ++ G VLIF S+
Sbjct: 725 KQEFIGITEKTPFKRMQTTN-EACYEKVMQHA--------------GKNQVLIFVHSRKE 769
Query: 192 CSNLALRLQFDRFPGTKEYKKQEKEDLI-------EALKEENDGKLSTNLEECILYGVAY 244
+ A RF K +++ L+ E L+ E D NL++ + YG A
Sbjct: 770 TAKTA------RFIRDKALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAI 823
Query: 245 HHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRDFISLNM 302
HHA + +R+ E+ + GT+Q++ T+TLA GVNLPA VII+ + Y I +
Sbjct: 824 HHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTEL 883
Query: 303 YK----QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLI 358
QM+GRAGR GE I++ + + S+MN PI S L D +
Sbjct: 884 SPQDVLQMLGRAGRPQFDTYGEGIIIT-AHSELQYYLSLMNQQ-LPIESQF-MRRLADCL 940
Query: 359 LEVVAANLCSSLEDVKTLIKHTLFY--QLKSPE--------DQQTFLETTLSEIV--ASL 406
V+ S+ED + +T Y L+SP D +L ++++ A++
Sbjct: 941 NAEVSLGTVRSIEDGVDWLGYTYLYVRMLRSPALYSVGPEYDDDKYLVQKRADLLHSAAI 1000
Query: 407 LASKGTMLTMN-EAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLL 458
L K +L N ++G L+ T + K A ++H+ + IY+ LL +F L
Sbjct: 1001 LLEKCKLLVYNRQSGTLTATELGKVAASYYVTHN-SMAIYNRLLMQTTSFIEL 1052
Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 76/399 (19%), Positives = 165/399 (41%), Gaps = 38/399 (9%)
Query: 44 ICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLY----LKKS 99
CT + L I ++ + DE +L GP+ E V+S++ Y L+K+
Sbjct: 1464 FCTPSQWDSLSKRWRSMRSIQKVDFYICDELQLLGG-FYGPLYEIVISRIRYMAVQLEKN 1522
Query: 100 IQIFAMSATIGNINALSTFI-EGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYAD 158
I++ +S ++ N L ++ + N P +T+ QSF S+T +
Sbjct: 1523 IRVVGLSVSVANARDLGEWLGTSPQCIFNFSPKDRPNPLTIH---LQSF---SIT--HFP 1574
Query: 159 NLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDL 218
+L +++ ++ + + ++F + LA L EY E+
Sbjct: 1575 SLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMADEDEYLFSLMEN- 1633
Query: 219 IEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAG 278
EA + D L +L+ +G+AY ++ ++ +++ Y G ++++ + +
Sbjct: 1634 -EAFNKVEDAALQQSLK----HGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYS 1688
Query: 279 VNLPAQRVIIRDS--YVGRD--FISLNMYK--QMVGRAGRTGLQESGESIMLCKTMQDFL 332
+ + VI+ + Y G++ +I + + QM+G G E + I++ T +
Sbjct: 1689 LKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEY 1748
Query: 333 RFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ--LKSPE- 389
+ +N P P+ SH+ L D + ++ S +D + + Y+ + +P
Sbjct: 1749 -YKKFLNE-PLPMESHLQ-VWLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPAY 1805
Query: 390 -DQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSI 427
Q ++SE ++ L+ + TMN+ L ++
Sbjct: 1806 YGLQDITHESVSEFLSDLVET-----TMNDLSEARLITV 1839
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 116 bits (290), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 187/398 (46%), Gaps = 53/398 (13%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
E++K +EE G K G P R + + + + T EK + S + + ++ +
Sbjct: 952 EDWKIRIEEKLGRKVVELTGDNTPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVAI 1011
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYLK----KSIQIFAMSATIGNINALSTFIEGITY 124
++IDE H+L E RGP+LE +VS+ ++ K++++ +S + N L+ ++ GI
Sbjct: 1012 LIIDEIHLLGE-DRGPVLEVIVSRTNFISSHTSKTVRVVGLSTALANARDLADWL-GIGQ 1069
Query: 125 VE--NSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLM- 181
V N RP+ + V Q F G+ A T + P V ++ +
Sbjct: 1070 VGLFNFRPSVRPVPLEVH---IQGFPGQHYCPRMA-------TMNKP--VFQAIRTHSPA 1117
Query: 182 --VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQ-------EKEDLIEALKEENDGKLST 232
VLIF SS+ AL L F T++ KQ E D+I ++E +
Sbjct: 1118 KPVLIFVSSRRQTRLTALDLI--AFLATEDDPKQWLHQDEREMTDIIATIRE-------S 1168
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS- 291
NL+ + +G+ HHA L +R+ +EE ++ +Q++ TSTLA GVN PA VI++ +
Sbjct: 1169 NLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTE 1228
Query: 292 -YVG--RDFISLNMYK--QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPIS 346
Y G R ++ + QM+GRAGR + G++++L ++ F P P+
Sbjct: 1229 YYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKK--DFYKKFLYEPFPVE 1286
Query: 347 SHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
S + L D + +AA +S +D I T F++
Sbjct: 1287 SSL-LSVLSDHLNAEIAAGTVTSKQDAMDYITWTYFFR 1323
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 169/374 (45%), Gaps = 35/374 (9%)
Query: 33 TKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEI-GLIVIDEFHMLNEPQRGPILECVVS 91
TK ++ + + + T EK + + + + ++ L+++DE H+L+E RGP+LE +V+
Sbjct: 169 TKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQVVRLLILDEVHLLHE-DRGPVLESLVA 227
Query: 92 KVLYLKKS----IQIFAMSATIGNINALSTFIE-----GITYVENS-RPTKHSEYVTVDK 141
+ L +S I+I +SAT+ N ++TF+ G+ Y ++ RP
Sbjct: 228 RTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPFIGLFYFDSRFRPVP--------- 278
Query: 142 RVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRL-Q 200
+ QSF G T D + VL ++ V++F ++ + A+ L +
Sbjct: 279 -LGQSFVGIKTTNKVQQLHDMEEVCY--EKVLKQIKAGHQVMVFVHARNSTVRTAMSLIE 335
Query: 201 FDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEA 260
+ G + + ++ +++ + + E G HHA + +R L+E
Sbjct: 336 MAKNRGELSFFQVDQGADYGQCEKQIQRSRNKQMREMFPDGFGIHHAGMLRQDRSLMESM 395
Query: 261 YLAGTLQIICCTSTLAAGVNLPAQRVIIR-----DSYVGRDFISLNMYK--QMVGRAGRT 313
+ G L+++ CT+TLA GVNLPA VII+ D+ G + L + Q+ GRAGR
Sbjct: 396 FSRGYLKVLVCTATLAWGVNLPAHAVIIKGTNIYDAKRG-TLVDLGILDVMQIFGRAGRP 454
Query: 314 GLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDV 373
+ GE ++ T D L + PI S +L E+ + + E V
Sbjct: 455 QFDKYGEGTII--TTHDKLSHYLTLLTQQNPIESQFQQSLADNLNAEIALGTVTNVDEAV 512
Query: 374 KTLIKHTLFYQLKS 387
+ L L+ ++++
Sbjct: 513 RWLSYTYLYVRMRA 526
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 184/397 (46%), Gaps = 51/397 (12%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
+++K +EE G K G P + + K + + T EK + S N + ++ +
Sbjct: 1390 DDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTI 1449
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIE---- 120
++IDE H+L E +RGP+LE +VS+ ++ +K ++I +S + N L+ ++
Sbjct: 1450 LIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQM 1508
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNL 180
G+ N RP+ + V Q F G+ A S+ A+
Sbjct: 1509 GLF---NFRPSVRPVPLEVH---IQGFPGQHYCPRMA-----SMNKPAFQAIRSHSPAK- 1556
Query: 181 MVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQ-------EKEDLIEALKEENDGKLSTN 233
VLIF SS+ AL L F T+E KQ E E++I +++ +N
Sbjct: 1557 PVLIFVSSRRQTRLTALELI--AFLATEEDPKQWLNMDEREMENIIATVRD-------SN 1607
Query: 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS-- 291
L+ + +G+ HHA L +R+ +EE ++ +Q++ TSTLA GVN PA VII+ +
Sbjct: 1608 LKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEY 1667
Query: 292 YVG--RDFISLNMYK--QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISS 347
Y G R ++ + QM+GRAGR + G++++L ++ F P P+ S
Sbjct: 1668 YDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKK--DFYKKFLYEPFPVES 1725
Query: 348 HMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
+ L D + +A +S +D I T F++
Sbjct: 1726 SL-LGVLSDHLNAEIAGGTITSKQDALDYITWTYFFR 1761
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 167/368 (45%), Gaps = 32/368 (8%)
Query: 33 TKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEI-GLIVIDEFHMLNEPQRGPILECVVS 91
+K ++ + + + T EK + + + + +I L+++DE H+L+E RGP+LE +V+
Sbjct: 571 SKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLILDEVHLLHE-DRGPVLESIVA 629
Query: 92 KVLYLKKS----IQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSF 147
+ L +S I+I +SAT+ N ++TF+ Y+ D R
Sbjct: 630 RTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIG---------LFFFDGRFRPVP 680
Query: 148 DGKSLTEIYADNLDYSLTGSGP---DAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRF 204
G++ I N L + VL V+ V++F ++ A A+ L +R
Sbjct: 681 LGQTFLGIKCANKMQQLNNMDEVCYENVLKQVKAGHQVMVFVHARNATVRTAMSL-IERA 739
Query: 205 PGTKE---YKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAY 261
+ + D + A K+ + + + E G + HHA + +R L+E +
Sbjct: 740 KNCGHIPFFFPTQGHDYVLAEKQVQRSR-NKQVRELFPDGFSIHHAGMLRQDRNLVENLF 798
Query: 262 LAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--QMVGRAGRTGL 315
G ++++ CT+TLA GVNLPA VII+ + Y + F+ L + Q+ GRAGR
Sbjct: 799 SNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQF 858
Query: 316 QESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKT 375
+ GE I++ T D L + PI S +L D + +A +++E+
Sbjct: 859 DKFGEGIII--TTHDKLSHYLTLLTQRNPIESQF-LESLADNLNAEIALGTVTNVEEAVK 915
Query: 376 LIKHTLFY 383
I +T Y
Sbjct: 916 WISYTYLY 923
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 184/397 (46%), Gaps = 51/397 (12%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
+++K +EE G K G P + + K + + T EK + S N + ++ +
Sbjct: 1390 DDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTI 1449
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIE---- 120
++IDE H+L E +RGP+LE +VS+ ++ +K ++I +S + N L+ ++
Sbjct: 1450 LIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIRQM 1508
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNL 180
G+ N RP+ + V Q F G+ A S+ A+
Sbjct: 1509 GLF---NFRPSVRPVPLEVH---IQGFPGQHYCPRMA-----SMNKPTFQAIRSHSPAK- 1556
Query: 181 MVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQ-------EKEDLIEALKEENDGKLSTN 233
VLIF SS+ AL L F T+E KQ E E++I +++ +N
Sbjct: 1557 PVLIFVSSRRQTRLTALELI--AFLATEEDPKQWLNMDEREMENIIGTIRD-------SN 1607
Query: 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS-- 291
L+ + +G+ HHA L +R+ +EE ++ +Q++ TSTLA GVN PA VII+ +
Sbjct: 1608 LKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIIKGTEY 1667
Query: 292 YVG--RDFISLNMYK--QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISS 347
Y G R ++ + QM+GRAGR + G++++L ++ F P P+ S
Sbjct: 1668 YDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKK--DFYKKFLYEPFPVES 1725
Query: 348 HMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
+ L D + +A +S +D I T F++
Sbjct: 1726 SL-LGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFR 1761
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 177/380 (46%), Gaps = 56/380 (14%)
Query: 33 TKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEI-GLIVIDEFHMLNEPQRGPILECVVS 91
+K ++ + + + T EK + + + + +I L+++DE H+L+E RGP+LE +V+
Sbjct: 571 SKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHE-DRGPVLESIVA 629
Query: 92 KVLYLKKS----IQIFAMSATIGNINALSTFIE-----GITYVENS-RPTKHSEYVTVDK 141
+ L +S I+I +SAT+ N ++TF+ G+ + + RP
Sbjct: 630 RTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLFFFDGRFRPVP--------- 680
Query: 142 RVFQSFDG-KSLTEIYA-DNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRL 199
+ Q+F G KS ++ +N+D ++VL V+ V++F ++ A A+ L
Sbjct: 681 -LGQTFLGIKSANKVQQLNNMDEVCY----ESVLKQVKAGHQVMVFVHARNATVRTAMSL 735
Query: 200 --------QFDRFPGTK--EYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADL 249
Q F T+ EY EK+ K N + E G + HHA +
Sbjct: 736 IERAKNNGQICYFLPTQGPEYGHAEKQ----VQKSRN-----RQVRELFPDGFSIHHAGM 786
Query: 250 TAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK- 304
+R L+E + G ++++ CT+TLA GVNLPA VII+ + Y + F+ L +
Sbjct: 787 LRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDV 846
Query: 305 -QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVA 363
Q+ GRAGR + GE I++ T D L + PI S +L D + +A
Sbjct: 847 MQIFGRAGRPQFDKFGEGIII--TTHDKLSHYLSLLTQQNPIESQF-LESLADNLNAEIA 903
Query: 364 ANLCSSLEDVKTLIKHTLFY 383
+++E+ I +T Y
Sbjct: 904 LGTVTNVEEAVKWISYTYLY 923
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 184/386 (47%), Gaps = 40/386 (10%)
Query: 24 AGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRG 83
A + G +++Q+++ + + T EK + ++ + L++IDE H+L++ RG
Sbjct: 586 AELTGDSRLSRKQIDETQVLVSTPEKWDITTRNSNNLAIVELVRLLIIDEIHLLHD-DRG 644
Query: 84 PILECVVSKVLYLKKSIQ----IFAMSATIGNINALSTFI----EGITYVENS-RPTKHS 134
P+LE +V++ + K Q I +SAT+ N + F+ EG+ Y ++S RP S
Sbjct: 645 PVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLRVPKEGLFYFDSSFRPCPLS 704
Query: 135 E-YVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACS 193
+ + + +R SL ++ A + + + VL + +++F S+ S
Sbjct: 705 QQFCGIKER-------NSLKKLKA------MNDACYEKVLESINEGNQIIVFVHSRKETS 751
Query: 194 NLALRLQFDRFPGTKEYKKQEKEDL--IEALKEENDGKLSTNLEECILYGVAYHHADLTA 251
A L+ ++F K K D + LK E L +L + I G+ HHA LT
Sbjct: 752 RTATWLK-NKFAEENITHKLTKNDAGSKQILKTEAANVLDPSLRKLIESGIGTHHAGLTR 810
Query: 252 GERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV------GRDFISLNMYKQ 305
+R L E+ + G LQ++ CT+TLA GVNLPA VII+ + V + +S Q
Sbjct: 811 SDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQ 870
Query: 306 MVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAAN 365
M+GRAGR GE I++ + + S++N PI S + +L EVVA N
Sbjct: 871 MLGRAGRPRYDTFGEGIIITD-QSNVQYYLSVLNQQL-PIESQFVSKLVDNLNAEVVAGN 928
Query: 366 L-CSSLEDVKTLIKHTLFY--QLKSP 388
+ C + D + +T Y L SP
Sbjct: 929 IKCRN--DAVNWLAYTYLYVRMLASP 952
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 183/395 (46%), Gaps = 47/395 (11%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
+++K +EE G K G P + + K + + T EK + S + + ++ +
Sbjct: 1391 DDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNI 1450
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIE---- 120
++IDE H+L E +RGP+LE +VS+ ++ +K ++I +S + N L+ ++
Sbjct: 1451 LIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQM 1509
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNL 180
G+ N RP+ + V Q F G+ A S+ A+
Sbjct: 1510 GLF---NFRPSVRPVPLEVH---IQGFPGQHYCPRMA-----SMNKPAFQAIRSHSPAK- 1557
Query: 181 MVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLST----NLEE 236
VLIF SS+ AL L F T+E KQ + ++E D + T NL+
Sbjct: 1558 PVLIFVSSRRQTRLTALELI--AFLATEEDPKQ----WLNMDEQEMDNIIGTVRDSNLKL 1611
Query: 237 CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVG 294
+ +G+ HHA L +R+ +EE ++ +Q++ TSTLA GVN PA VII+ + Y G
Sbjct: 1612 TLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDG 1671
Query: 295 R-----DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHM 349
+ DF ++ QM+GRAGR + G++++L ++ F P P+ S +
Sbjct: 1672 KTRRYVDFPITDVL-QMMGRAGRPQFDDQGKAVILVHDIKK--DFYKKFLYEPFPVESSL 1728
Query: 350 DPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
L D + +A +S +D I T F++
Sbjct: 1729 -LGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFR 1762
Score = 96.3 bits (238), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 179/373 (47%), Gaps = 42/373 (11%)
Query: 33 TKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEI-GLIVIDEFHMLNEPQRGPILECVVS 91
+K ++ + + + T EK + + + + +I L+++DE H+L+E RGP+LE +V+
Sbjct: 572 SKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHE-DRGPVLESIVA 630
Query: 92 KVLYLKKS----IQIFAMSATIGNINALSTFIE-----GITYVENS-RPTKHSEYVTVDK 141
+ L +S I+I +SAT+ N ++TF+ G+ Y + RP
Sbjct: 631 RTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVP--------- 681
Query: 142 RVFQSFDG-KSLTEIYA-DNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRL 199
+ Q+F G KS ++ +N+D ++VL V+ V++F ++ A A+ L
Sbjct: 682 -LGQTFLGIKSTNKMQQLNNMDEVCY----ESVLKQVKAGHQVMVFVHARNATVRTAMSL 736
Query: 200 QFDRFPGTKE---YKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRL 256
+R + + + E + ALK+ + + + E G + HHA + +R L
Sbjct: 737 -IERAKNSGQISCFLPTEGPEYGHALKQVQKSR-NKQVRELFSDGFSIHHAGMLRQDRNL 794
Query: 257 IEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--QMVGRA 310
+E + G ++++ CT+TLA GVNLPA V+I+ + Y + F+ L + Q+ GRA
Sbjct: 795 VENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRA 854
Query: 311 GRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSL 370
GR + GE I++ T D L + PI S +L D + +A +++
Sbjct: 855 GRPQFDKFGEGIII--TTHDKLSHYLSLLTQQNPIESQF-LESLADNLNAEIALGTVTNV 911
Query: 371 EDVKTLIKHTLFY 383
E+ + +T Y
Sbjct: 912 EEAVRWMSYTYLY 924
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 168/360 (46%), Gaps = 57/360 (15%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E + +K + + + E G + T +Q+++ I + T EK +
Sbjct: 619 LVQEMVGNFSKRLKSYGIVVNELTGDQSL---TNKQISETQIIVTTPEKWDIITRKSGDR 675
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQ----IFAMSATIGNINALS 116
+ LI+IDE H+L++ +RGP+LEC+V++ L + +S Q + +SAT+ N ++
Sbjct: 676 AYTQLVKLIIIDEIHLLHD-ERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNYEDVA 734
Query: 117 TFI----EGITYVENS-RPTK-HSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPD 170
TF+ +G+ Y ++S RP +Y+ + R + + D + T
Sbjct: 735 TFLRVEPDGVFYFDSSYRPIPLEQQYIGISDRGIKQLQRCN---------DITFTKVSER 785
Query: 171 AVLHLVQGNLMVLIFCSSKIACSNLALRLQ--------FDRF---PGTKEYKKQEKEDLI 219
G+ +LIF S+ + L+ DR+ P ++E + I
Sbjct: 786 V------GDHQILIFVHSRRETAKTGKDLRDRAVEDQSIDRYIRDPASREILRATASKQI 839
Query: 220 EALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGV 279
+ + L++ + YG+ HHA L+ +R L+E+ + +Q++ T+TLA GV
Sbjct: 840 Q----------NAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLISTATLAWGV 889
Query: 280 NLPAQRVIIRDSYV-----GRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRF 334
NLPA VII+ + + G +S QM+GRAGR + GE I++ T Q L+F
Sbjct: 890 NLPAHTVIIKGTQIYNPEKGWCELSPLDVTQMLGRAGRPPFDKEGEGIII--TSQHELQF 947
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 155/343 (45%), Gaps = 54/343 (15%)
Query: 37 LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYL 96
L++ +I + EK L Q + I L+++DE H++ + GP +E VVS++ Y+
Sbjct: 1491 LDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGG-EYGPTMEIVVSRMRYI 1549
Query: 97 K----KSIQIFAMSATIGNINALSTFIEGIT------YVENSRPTKHSEYVTVDKRVFQS 146
++++ A+S++I N L +I G T + N RP EY + F
Sbjct: 1550 STQTGNALRVIALSSSIANARDLVLWI-GATPQTCYNFHPNVRPIP-VEY-QIQGFEFPH 1606
Query: 147 FDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRL--QFDRF 204
F+ + L + P N ++F ++ +LA + F
Sbjct: 1607 FNARMLA------------MTKPTVYEVAKNKNQQSIVFVPTRKLSRSLAADIIANVSSF 1654
Query: 205 PGT--KEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYL 262
T K Y E+ L L++ + S L++ + GVA++H LT ERR++E +
Sbjct: 1655 EDTLTKPYLVCEEHVLTPYLEDVD----SFALKQSLQMGVAFYHDGLTERERRVVEILFR 1710
Query: 263 AGTLQIICCTSTLAAGV-NLPAQRVIIRDS--YVGRDF----ISLNMYKQMVGRAGRTGL 315
+G+++++ T ++A + N+ AQ V+I + Y G+D +N QM+GRAG+
Sbjct: 1711 SGSIRVLIATHSVAWLLDNVFAQLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGK--- 1767
Query: 316 QESGESI--------MLCKTMQDFLRFSSMMNAGPEPISSHMD 350
QE G I +LC + + M P P+ SH+D
Sbjct: 1768 QEGGGVISNKVAKVLLLCHAPKK--EYYKMFLNEPLPVESHLD 1808
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 123/449 (27%), Positives = 201/449 (44%), Gaps = 54/449 (12%)
Query: 15 EFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLI 69
++K +E G K G Y P L I T EK + + + + + L+
Sbjct: 1391 DWKVKFQEKLGKKLVELTGDYTPNMIALQNADIVTTTPEKWDGISRNWKNRSYVTSVSLL 1450
Query: 70 VIDEFHMLNEPQRGPILECVVSKVLYLKK----SIQIFAMSATIGNINALSTFIEGITYV 125
+IDE H++ E RGPILE +VS++ + K +I++ +S + N LS ++ GI V
Sbjct: 1451 IIDEIHLIGE-LRGPILEVIVSRMKLISKQTGVNIRVVGLSTAMANAIDLSEWM-GIDRV 1508
Query: 126 E--NSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPD-AVLHLVQGNLMV 182
N RP+ + V Q F GK+ Y + T + P A + V
Sbjct: 1509 GLFNFRPSCRPVPIEVH---IQGFQGKN----YCPRMQ---TMNKPSFAAIATYSPKKPV 1558
Query: 183 LIFCSSK----IACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECI 238
LIF SS+ + +L L D P K + E + +K+++ L +
Sbjct: 1559 LIFVSSRRQTRLTALDLISYLVVDNDPLQWIQKGFDIEPTLARVKDQH-------LRHTL 1611
Query: 239 LYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR- 295
+G+ HHA L G+R ++E + +QI+ TSTLA GVNLPA VII+ + + G+
Sbjct: 1612 SFGIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLAWGVNLPAHLVIIKGTEYFDGKT 1671
Query: 296 ----DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDP 351
DF L QM+GRAGR + G+++++ + +F P P+ SH+
Sbjct: 1672 KRYVDF-PLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKK--QFYKKFLYDPFPVESHLKD 1728
Query: 352 PTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQL-KSP-----EDQQT-FLETTLSEIVA 404
L E+V+ + S + L+ F +L SP ED + LS+++
Sbjct: 1729 FLHDHLNAEIVSGTIQSKQGAINYLVNTFFFRRLVVSPSYYGLEDNSVEAVNQYLSDLLD 1788
Query: 405 SLLAS--KGTMLTMNEAGHLSLTSIAKAA 431
S LA + + + +NE + S+ K A
Sbjct: 1789 STLADLEQSSCIEINEYDEIIPMSMGKIA 1817
Score = 102 bits (255), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 172/369 (46%), Gaps = 34/369 (9%)
Query: 33 TKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSK 92
T+++L + I + T EK + + LI+IDE H+L+E +RGP+LEC+V++
Sbjct: 578 TQKELKETQIIVTTPEKWDVITRKSSDVALTKLVRLIIIDEIHLLHE-ERGPVLECIVAR 636
Query: 93 VLY----LKKSIQIFAMSATIGNINALSTFIE----GITYVENS-RPTKHSE-YVTVDKR 142
L ++ I+I +SAT+ N ++ FI G + ++S RP ++ ++ V
Sbjct: 637 TLRQVETTQEMIRIVGLSATLPNYKDVARFIRAPASGTHFFDSSYRPVPLTQNFIGVKDN 696
Query: 143 VFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFD 202
++ ++ + L+ SL +G+ V+IF S+ A L
Sbjct: 697 QGIMVMKNNMNQLCYERLEKSLK-----------EGH-QVMIFVHSRKDTVKSAEILS-- 742
Query: 203 RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYL 262
K ++ +E A KE K S + +G++ HHA L +R ++E+ +
Sbjct: 743 DMAKEKHFRFSNEEPSFGAKKEFEKVK-SKEIRSLFQHGISVHHAGLLRSDRNVVEKYFA 801
Query: 263 AGTLQIICCTSTLAAGVNLPAQRVIIRDSYV----GRDFISLNMYK--QMVGRAGRTGLQ 316
GT++++ CT+TLA GVNLPA VII+ + V F+ L + Q+ GRAGR
Sbjct: 802 NGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFD 861
Query: 317 ESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTL 376
SGE +L T +D L + + PI S L E+V + + E V L
Sbjct: 862 TSGEGFLL--TSKDKLDHYLSLMSSSMPIESKFITNLEDHLNAEIVLGTVSNVNEAVNWL 919
Query: 377 IKHTLFYQL 385
LF ++
Sbjct: 920 SYTYLFIRM 928
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 184/395 (46%), Gaps = 47/395 (11%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
E++K +EE G K G P R + + + + T EK + S + + ++ +
Sbjct: 1399 EDWKVRIEEKLGKKVVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVSI 1458
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIE-GIT 123
++IDE H+L + +RGP+LE +VS+ ++ +K +++ +S + N L+ ++
Sbjct: 1459 LIIDEIHLLGD-ERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDLADWLNINQM 1517
Query: 124 YVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVL 183
+ N RP+ + V Q F G+ A + A+ VL
Sbjct: 1518 GLFNFRPSVRPVPLEVH---IQGFPGQHYCPRMA-----RMNKPAFQAIRSHSPAK-PVL 1568
Query: 184 IFCSSKIACSNLALRLQFDRFPGTKEYKKQ-------EKEDLIEALKEENDGKLSTNLEE 236
IF SS+ +L L F T++ KQ E D+I +++ +NL+
Sbjct: 1569 IFVSSRRQTRLTSLDLI--AFLATEDDPKQWLKMDEREMNDIIGTVRD-------SNLKL 1619
Query: 237 CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVG 294
+ +G+ HHA L +R+ +EE ++ +Q++ TSTLA GVN PA VI++ + Y G
Sbjct: 1620 TLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDG 1679
Query: 295 --RDFISLNMYK--QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPI-SSHM 349
R ++ + QM+GRAGR + G++++L ++ F P P+ SS +
Sbjct: 1680 KTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKK--DFYKKFLYEPFPVESSLL 1737
Query: 350 DPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
D L D + +AA +S +D I T F++
Sbjct: 1738 D--VLADHLNAEIAAGTITSKQDAMDYITWTYFFR 1770
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 162/341 (47%), Gaps = 45/341 (13%)
Query: 66 IGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKS----IQIFAMSATIGNINALSTFIE- 120
+ L+++DE H+L+E RGP+LE +V++ L +S I+I +SAT+ N ++TF+
Sbjct: 614 VKLLILDEVHLLHE-DRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 672
Query: 121 ----GITYVENS-RPTKHSEYVTVDKRVFQSFDG-KSLTEI----YADNLDYSLTGSGPD 170
G+ Y ++ RP + Q+F G K+ ++ + D + Y +
Sbjct: 673 NPYIGLFYFDSRFRPVP----------LGQTFIGIKTTNKVQQLNHMDEVCY-------E 715
Query: 171 AVLHLVQGNLMVLIFCSSKIAC--SNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDG 228
VL + V++F ++ A + +ALR + + + D +A K+
Sbjct: 716 NVLKQIMAGHQVMVFVHARNATVRTAMALREKAKNNGHICHFLSPQGSDYGQAEKQVQRS 775
Query: 229 KLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVII 288
+ + L E G + HHA + +R L+E + G ++++ CT+TLA GVNLPA V+I
Sbjct: 776 R-NKQLRELFPDGFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVI 834
Query: 289 RDS--YVGR--DFISLNMYK--QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGP 342
+ + Y + F+ L + Q+ GRAGR + GE I++ T D L +
Sbjct: 835 KGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIII--TTHDKLSHYLTLLTQQ 892
Query: 343 EPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFY 383
PI S +L D + +A +++E+ I +T Y
Sbjct: 893 NPIESQF-LESLADNLNAEIALGTVTNVEEAVKWISYTYLY 932
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 147/277 (53%), Gaps = 28/277 (10%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
EEFK E Y G++ G Y + L+K + I T EK L I + I+++ +
Sbjct: 84 EEFKSKYERY-GLRIALSIGDYDEDE-DLSKYHLIITTAEKLDSLWRHKI--DWINDVSV 139
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENS 128
+V+DE H++N+ RG LE +++K+ ++QI +SATIGN + L+ ++ V++
Sbjct: 140 VVVDEIHLINDETRGGTLEILLTKLKEF--NVQIIGLSATIGNPDELAEWLNAELIVDDW 197
Query: 129 RPTKHSEYVTVDKRVFQSFDGKSLTEIYA-DNLD-YSLTGSGPDAVLHLVQGNLMVLIFC 186
RP + + + ++ + F + EI A DN D Y+L V+ V+ L+FC
Sbjct: 198 RPVELKKGIYKNEAI--EFINGEIREIKAVDNNDIYNL-------VVDCVKEGGCCLVFC 248
Query: 187 SSKIACSNLALRLQFDRFPGTKEYK---KQEKEDLIEALKEENDGKLSTNLEECILYGVA 243
++K N A +L +F T+E K K+ E+++ L E ++ L ECIL G A
Sbjct: 249 NTKRNAVNEAKKLNLKKFL-TEEEKIRLKEIAEEILSIL--EPPTEMCKTLAECILNGSA 305
Query: 244 YHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVN 280
+HHA LT R+++E+A+ +++ICCT TL N
Sbjct: 306 FHHAGLTYQHRKIVEDAFRKRLIKVICCTPTLCLNAN 342
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 276 AAGVNLPAQRVIIRD----SYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDF 331
+AG+NLP +R I++D + G +I + +Q +GRAGR GL GE I++ K +D+
Sbjct: 839 SAGLNLPCRRAIVKDLTRFTNKGMRYIPIMEIQQCIGRAGRPGLDPYGEGIIVAKNDRDY 898
Query: 332 LRFSSMMNAGPEPISSHM-DPPTLVDLILEVVAANLCSSLEDVKTLIKHTLF 382
LR + PEPI S + + L +L ++A D++ I++T +
Sbjct: 899 LRAYQALTQKPEPIYSKLSNQAVLRTQLLGLIATGEIRDEYDLEWFIRNTFY 950
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 194/411 (47%), Gaps = 48/411 (11%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E S +K F + E + G +K Q + +CT EK + +
Sbjct: 541 LVQEMVGSFSKRLAPFGITVGE---MTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGER 597
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKS----IQIFAMSATIGNINALS 116
+ L++IDE H+L++ RGP+LE +V + + + ++ +SAT+ N ++
Sbjct: 598 AYNQMVRLLIIDEIHLLHD-DRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVA 656
Query: 117 TFI----EGITYVENS-RPTK-HSEYVTV-DKRVFQSFDGKSLTEIYADNLDYSLTGSGP 169
TF+ E + + +NS RP +Y+ V +K+ + F +++ E+ D +
Sbjct: 657 TFLRVKPEHLHFFDNSYRPVPLEQQYIGVTEKKALKRF--QAMNEVVYDKI--------- 705
Query: 170 DAVLHLVQGNLMVLIFCSSKIACSNLALR---LQFDRFPGTKEYKKQEKEDLIEALKEEN 226
+ H + ++V + + A + A+R L+ D +E E L+ E
Sbjct: 706 --MEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKDTLSAFM----REGSASTEILRTEA 759
Query: 227 DGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRV 286
+ + +L++ + YG A HHA + +R L+E+ + +Q++ T+TLA GVNLPA V
Sbjct: 760 EQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTV 819
Query: 287 IIRDSYV-----GR--DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMN 339
II+ + + GR + +L++ QM+GRAGR + GE I++ + + S+MN
Sbjct: 820 IIKGTQIYNPEKGRWTELGALDIM-QMLGRAGRPQYDDRGEGILIT-NHSELQYYLSLMN 877
Query: 340 AGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFY--QLKSP 388
P+ S M L D++ V SS+ + + +T + LK+P
Sbjct: 878 QQL-PVESQM-VSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNP 926
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/342 (17%), Positives = 137/342 (40%), Gaps = 56/342 (16%)
Query: 38 NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLY-- 95
+ + I T E+ + Q + + L + D+ HM+ G + E V S+ Y
Sbjct: 1414 QRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIG-ASNGAVFEVVCSRTRYIS 1472
Query: 96 --LKKSIQIFAMSATIGNINALSTFI-----EGITYVENSRPT-------------KHSE 135
L+ ++++ A+S+++ N L ++ ++ ++RP S
Sbjct: 1473 SQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSHNASR 1532
Query: 136 YVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNL 195
+ +++ V+Q+ +A L+ P V V+ + +A ++
Sbjct: 1533 FAAMERPVYQAICR------HAGKLE-----PKPALVFVPVRRQTRPVAVALLTMALADG 1581
Query: 196 ALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERR 255
A + RF + E +D +AL + + + +L E + GV + H +
Sbjct: 1582 APK----RF-----LRLAEHDDTFQALLADIEDE---SLRESVSCGVGFLHEGTAPKDVH 1629
Query: 256 LIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS-------YVGRDFISLNMYKQMVG 308
++++ + + +Q+ + + + A V++ D+ +V D+ +M MVG
Sbjct: 1630 IVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADML-HMVG 1688
Query: 309 RAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMD 350
A R L + +++C+T + + P P+ SH+D
Sbjct: 1689 LANRPILDSDAKCVVMCQTSKR--AYYKKFLCDPLPVESHLD 1728
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 105/389 (26%), Positives = 194/389 (49%), Gaps = 46/389 (11%)
Query: 24 AGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRG 83
A + G + K +++ I +CT EK + + + LI++DE H+L++ RG
Sbjct: 567 AELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRG 625
Query: 84 PILECVVSKVL----YLKKSIQIFAMSATIGNINALSTFI-----EGITYVENS-RPTK- 132
P+LE +V++ + ++ +++ +SAT+ N ++TF+ +G+ Y +NS RP
Sbjct: 626 PVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPL 685
Query: 133 HSEYVTV-DKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIA 191
YV + +K+ + F + + EI + + + H + ++V + +
Sbjct: 686 EQTYVGITEKKAIKRF--QIMNEIVYEKI-----------MEHAGKNQVLVFVHSRKETG 732
Query: 192 CSNLALR---LQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHAD 248
+ A+R L+ D T +E E L+ E + + L++ + YG A HHA
Sbjct: 733 KTARAIRDMCLEKD----TLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAG 788
Query: 249 LTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV-----GR--DFISLN 301
+T +R L+E+ + +Q++ T+TLA GVNLPA VII+ + V GR + +L+
Sbjct: 789 MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALD 848
Query: 302 MYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLI-LE 360
+ QM+GRAGR GE I++ + + + S++N PI S M L D++ E
Sbjct: 849 IL-QMLGRAGRPQYDTKGEGILIT-SHGELQYYLSLLNQQL-PIESQM-VSKLPDMLNAE 904
Query: 361 VVAANLCSSLEDVKTLIKHTLFYQ-LKSP 388
+V N+ ++ + V L L+ + L+SP
Sbjct: 905 IVLGNVQNAKDAVNWLGYAYLYIRMLRSP 933
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 161/341 (47%), Gaps = 57/341 (16%)
Query: 37 LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYL 96
L K +I I T EK L Q + I L V+DE H++ + GP+LE + S++ Y+
Sbjct: 1419 LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIG-GENGPVLEVICSRMRYI 1477
Query: 97 ----KKSIQIFAMSATIGNINALSTFI-----EGITYVENSRPTKHSEYVTVDKRVFQSF 147
++ I+I A+S+++ N ++ ++ + N RP ++ Q F
Sbjct: 1478 SSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHI-------QGF 1530
Query: 148 D-GKSLTEI--YADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIAC--------SNLA 196
+ + T + A + +++T P V++F S+ + A
Sbjct: 1531 NISHTQTRLLSMAKPVYHAITKHSPKKP---------VIVFVPSRKQTRLTAIDILTTCA 1581
Query: 197 LRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRL 256
+Q RF E +DLI L++ +D + L+E +L GV Y H L+ ERRL
Sbjct: 1582 ADIQRQRFLHCTE------KDLIPYLEKLSD----STLKETLLNGVGYLHEGLSPMERRL 1631
Query: 257 IEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--QMVGRA 310
+E+ + +G +Q++ + +L G+N+ A VII D+ Y G+ ++ +Y QMVG A
Sbjct: 1632 VEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHA 1691
Query: 311 GRTGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPISSHMD 350
R + G +++C+ + +DF F + P P+ SH+D
Sbjct: 1692 NRPLQDDEGRCVIMCQGSKKDF--FKKFLYE-PLPVESHLD 1729
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
norvegicus GN=Ascc3 PE=2 SV=1
Length = 2197
Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 185/401 (46%), Gaps = 60/401 (14%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
+++K +EE G K G P + + K + + T EK + S + + ++ +
Sbjct: 1391 DDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNI 1450
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIE---- 120
++IDE H+L E +RGP+LE +VS+ ++ +K ++I +S + N L+ ++
Sbjct: 1451 LIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQM 1509
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSG---PDAVLHLVQ 177
G+ N RP+ + V Q F G+ A + S PD L+
Sbjct: 1510 GLF---NFRPSVRPVPLEVH---IQGFPGQHYCPRMASMNKPAFQESHTHCPDRPCLLLP 1563
Query: 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQ-------EKEDLIEALKEENDGKL 230
++ S++ +L+ F T+E KQ E E++I +++
Sbjct: 1564 ERML-----------SSMT-KLELIAFLATEEDPKQWLNMDEQEMENIIATVRD------ 1605
Query: 231 STNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRD 290
+NL+ + +G+ HHA L +R+ +EE ++ +Q++ TSTLA GVN PA VII+
Sbjct: 1606 -SNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKG 1664
Query: 291 S--YVGR-----DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPE 343
+ Y G+ DF ++ QM+GRAGR + G++++L ++ F P
Sbjct: 1665 TEYYDGKTRRYVDFPITDVL-QMMGRAGRPQFDDQGKAVILVHDIKK--DFYKKFLYEPF 1721
Query: 344 PISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
P+ S + L D + +A +S +D I T F++
Sbjct: 1722 PVESSL-LGVLSDHLNAEIAGGTITSKQDALDYITWTYFFR 1761
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 179/373 (47%), Gaps = 42/373 (11%)
Query: 33 TKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEI-GLIVIDEFHMLNEPQRGPILECVVS 91
+K ++ + + + T EK + + + + +I L+++DE H+L+E RGP+LE +V+
Sbjct: 572 SKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHE-DRGPVLESIVA 630
Query: 92 KVLYLKKS----IQIFAMSATIGNINALSTFIE-----GITYVENS-RPTKHSEYVTVDK 141
+ L +S I+I +SAT+ N ++TF+ G+ Y + RP
Sbjct: 631 RTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVP--------- 681
Query: 142 RVFQSFDG-KSLTEIYA-DNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRL 199
+ Q+F G KS ++ +N+D ++VL V+ V++F ++ A A+ L
Sbjct: 682 -LGQTFLGIKSANKMQQLNNMDEVCY----ESVLKQVKAGHQVMVFVHARNATVRTAMSL 736
Query: 200 QFDRFPGTKE---YKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRL 256
+R + + + + + ALK+ + + + E G + HHA + +R L
Sbjct: 737 -IERAKNSGQISCFLPTQGPEYGHALKQVQKSR-NKQVRELFSDGFSIHHAGMLRQDRNL 794
Query: 257 IEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--QMVGRA 310
+E + G ++++ CT+TLA GVNLPA VII+ + Y + F+ L + Q+ GRA
Sbjct: 795 VENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRA 854
Query: 311 GRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSL 370
GR + GE I++ T D L + PI S +L D + +A +++
Sbjct: 855 GRPQFDKFGEGIII--TTHDKLSHYLSLLTQQNPIESQF-LESLADNLNAEIALGTVTNV 911
Query: 371 EDVKTLIKHTLFY 383
E+ + +T Y
Sbjct: 912 EEAVKWMSYTYLY 924
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 148/324 (45%), Gaps = 66/324 (20%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G P + + +I I T EK + S + ++ LI++DE H+L RGP+LE
Sbjct: 1217 GDTNPDVKAVTNANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGS-DRGPVLE 1275
Query: 88 CVVSKVLYL----KKSIQIFAMSATIGNINALSTFI---EGITYVENS-RPTKHSEYV-- 137
+VS++ Y+ K +++ +S + N N L+ ++ +G+ +S RP Y+
Sbjct: 1276 MIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWLNIRDGLFNFRHSVRPVPLEIYIDG 1335
Query: 138 -----------TVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFC 186
+++K FQ+ S T+ VLIF
Sbjct: 1336 FPGRAYCPRMMSMNKPAFQAIKTHSPTQ--------------------------PVLIFV 1369
Query: 187 SS----KIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGV 242
SS ++ +L + P Y +E+ ++I + E+ KL+ + +G+
Sbjct: 1370 SSRRQTRLTAKDLIAFCGLEDNPRRFLYMDEEELEMIVSEVEDKSLKLA------LPFGI 1423
Query: 243 AYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR-----DSYVG--R 295
A HHA LT +R++ EE ++ +QI+ TSTLA GVN PA VI++ D+ +G +
Sbjct: 1424 ALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTPAHLVIVKGTEYYDAKIGGYK 1483
Query: 296 DFISLNMYKQMVGRAGRTGLQESG 319
D + L QM+GRAGR SG
Sbjct: 1484 D-MDLTDVLQMLGRAGRPQFDNSG 1506
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 181/377 (48%), Gaps = 51/377 (13%)
Query: 33 TKRQLNKKSIYICTIEKGSKLIGSLIQENRIDE-IGLIVIDEFHMLNEPQRGPILECVVS 91
TK ++ + I + T EK + + + ++ E + L++IDE HML++ +RG ++E +V+
Sbjct: 381 TKTEIAETQILVTTPEKWDVVTRKSVGDTQLAEKVRLVIIDEVHMLHD-ERGAVIESLVA 439
Query: 92 KVLYL----KKSIQIFAMSATIGNINALSTFI-----EGITYVENS-RPTKHSEYVTVDK 141
+ L ++ I+I +SAT+ N ++ F+ +G+ Y ++ RP
Sbjct: 440 RTQRLVETSQQMIRIVGLSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCP--------- 490
Query: 142 RVFQSFDG-KSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQ 200
+ Q F G K +I N+D + D VL L+Q V+IF S+ N A +L+
Sbjct: 491 -IEQHFIGAKGSPKIVNSNIDEACF----DKVLKLIQEGHQVMIFVHSRKETINSAKKLR 545
Query: 201 FDRFPGTKEYKKQEKEDLIEALKEEN------DGKLSTN--LEECILYGVAYHHADLTAG 252
+++ + + DL++ + E D S N L+E Y + H+A +
Sbjct: 546 -------EQFFHEGEADLLDNSQHEKYSLAQRDVSKSKNKELKELFKYSMGIHNAGMLRS 598
Query: 253 ERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV----GRDFISLNMYK--QM 306
+R L E + G L+I+CCT+TLA GVNLPA V+I+ + + F+ L + Q+
Sbjct: 599 DRHLTERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQI 658
Query: 307 VGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANL 366
GRAGR + S + ++ T D L + PI S LVD + V+
Sbjct: 659 FGRAGRPQFESSAVAYII--TTHDKLSHYISVVTQQSPIESRF-TDRLVDNLNAEVSLGT 715
Query: 367 CSSLEDVKTLIKHTLFY 383
+++++ + + +T Y
Sbjct: 716 VTNIDEAVSWLGYTYLY 732
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 94/365 (25%), Positives = 180/365 (49%), Gaps = 55/365 (15%)
Query: 39 KKSIYICTIEKGSKLIGSLIQENRIDE-IGLIVIDEFHMLNEPQRGPILECVVSKVLYLK 97
K +I I T EK L +R+ E + L+++DE H + E +RG LE +++++ +
Sbjct: 234 KCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKE-KRGASLEVILTRMNTMC 292
Query: 98 KSIQIFAMSATIGNINALSTFIEG--------ITYVENSRPTKHSEYVTVDKRVFQSFDG 149
++I+ A+SAT+ NI L+ +++ +++ E+ R + +++V SF+
Sbjct: 293 QNIRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFV-----YGYSFNC 347
Query: 150 KSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIAC-SNLALRLQFDRFPGTK 208
K+ D ++ S ++ N VLIFC ++ + S L F +K
Sbjct: 348 KN------DFQKDAIYNSKLIEIIEKHADNRPVLIFCPTRASTISTAKFLLNNHIFSKSK 401
Query: 209 EYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQI 268
+ D I L EC+ G+A+HHA ++ +R +E+ +LAG++ I
Sbjct: 402 KRCNHNPSDKI--------------LNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINI 447
Query: 269 ICCTSTLAAGVNLPAQRVIIR-----DSYVGRDFISLNMYKQMVGRAGRTGLQESGESIM 323
+C TSTLA GVNLPA VII+ +S +++ L++ QM+GRAGR + G +++
Sbjct: 448 LCSTSTLAVGVNLPAYLVIIKGTKSWNSSEIQEYSDLDVL-QMIGRAGRPQFETHGCAVI 506
Query: 324 LC-----KTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIK 378
+ +T ++ + + ++ + S H++ L++ + + S+E ++
Sbjct: 507 MTDSKMKQTYENLIHGTDVLES-----SLHLN---LIEHLAAETSLETVYSIETAVNWLR 558
Query: 379 HTLFY 383
+T FY
Sbjct: 559 NTFFY 563
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 144/311 (46%), Gaps = 46/311 (14%)
Query: 42 IYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVS--KVLY---- 95
I + T EK + + + L +IDE H+L E RG LE VVS K +Y
Sbjct: 250 IIMTTPEKWDSMTRKWKDNTLVQLVRLFLIDEVHILKEENRGATLEVVVSRMKTIYSLSH 309
Query: 96 LKKSIQIF------AMSATIGNINALSTFIEG-------ITYVENSRPTKHSEYVTVDKR 142
L + + F A+SATI N+ ++ ++ + E+SRP K ++
Sbjct: 310 LSEDRKAFIPMRFVAVSATIPNVEDIADWLSDENSPGVCMKMDESSRPVKL-------RK 362
Query: 143 VFQSFD-GKSLTEIYAD-NLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQ 200
V F +E D L+Y + ++ L+FCS++ A L
Sbjct: 363 VVLGFPCSTKQSEFKFDLTLNYKIAN-----IIQTYSDGRPTLVFCSTRKGVQQAASILT 417
Query: 201 FD-RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEE 259
D +F + E+K Q + ++K+ + L + + YGV YHHA + +R++IE
Sbjct: 418 KDAKFVMSIEHK-QRLQKCANSIKD-------SKLRDVLQYGVGYHHAGVDISDRKVIEN 469
Query: 260 AYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRDFISLNMYK--QMVGRAGRTGL 315
++L G L ++ TSTLA GVNLPA VI++ + YV F + QM+GRAGR
Sbjct: 470 SFLIGDLPVLFTTSTLAMGVNLPAHLVIVKSTMHYVSGMFQEYSETDILQMIGRAGRPQF 529
Query: 316 QESGESIMLCK 326
+ ++++ +
Sbjct: 530 DSTATAVIMTR 540
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 69/319 (21%)
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI-----T 123
+V+DE H + + RGP+ E V+ L+L +++ ++SAT+ N +++ +
Sbjct: 129 VVMDEVHFIADRMRGPVWEEVI---LHLPDDVRMVSLSATVSNAEEFGGWVQTVRGDTTV 185
Query: 124 YVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLT------------------ 165
V+ RP ++V V KR+F FD Y N+D S
Sbjct: 186 VVDEHRPVPLWQHVLVGKRLFDLFD-------YDSNVDQSPVNPNLLRHIAHCREADRMS 238
Query: 166 -----------GSG-----------PDAVLHL-VQGNLMVLIFCSSKIACSNLALRLQFD 202
GSG P+ + L +G L + F S+ C A Q
Sbjct: 239 DWRNPRRRAGRGSGVRPRFYRSLARPEVIAILDAEGLLPAITFVFSRFGCD--AAVQQCL 296
Query: 203 RFP---GTKEYKKQEKEDLIEALKEENDGKLST----NLEECILYGVAYHHADLTAGERR 255
R P ++E + Q E + + D L+ E +L G+A HHA + R
Sbjct: 297 RSPLRLTSEEERAQIAEVIDHRCGDLADADLAVLGYYEWREGLLRGLAAHHAGMLPAFRH 356
Query: 256 LIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRD--SYVGRDFISL--NMYKQMVGRAG 311
+EE + AG ++ + T TLA G+N+PA+ V++ + G+ + L Y Q+ GRAG
Sbjct: 357 AVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGKQHVPLTPGEYTQLTGRAG 416
Query: 312 RTGLQESGESIMLCKTMQD 330
R G+ G ++++ +D
Sbjct: 417 RRGIDVEGHAVVIWHPSED 435
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1
PE=2 SV=2
Length = 1435
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 142/310 (45%), Gaps = 44/310 (14%)
Query: 42 IYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKK--- 98
I + T EK + + + + L +IDE H++ + RGP LE VVS++ ++
Sbjct: 381 IIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQ 440
Query: 99 ---------SIQIFAMSATIGNINALSTFIEG-------ITYVENSRPTKHSEYVTVDKR 142
++ A+SATI N ++ ++ + E+ RP K + K
Sbjct: 441 TLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVK------LQKV 494
Query: 143 VFQSFDGKSLTEIYAD-NLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQF 201
V + TE D L+Y + +V+ + L+FC+++ A L
Sbjct: 495 VLGFPCSSNQTEFKFDLTLNYKIA-----SVIQMYSDQKPTLVFCATRKGVQQAASVLVK 549
Query: 202 D-RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEA 260
D +F T E +K+ L + D KL L++ G AYHHA + +R+++E A
Sbjct: 550 DAKFIMTVE----QKQRLQKYAYSVRDSKLRDILKD----GAAYHHAGMELSDRKVVEGA 601
Query: 261 YLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQ 316
+ G L ++ TSTLA GVNLPA V+I+ + Y G F S QM+GRAGR
Sbjct: 602 FTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRPQFD 661
Query: 317 ESGESIMLCK 326
+ ++++ +
Sbjct: 662 TTATAVIMTR 671
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 127/275 (46%), Gaps = 23/275 (8%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+ EKY+ +E++ A G Y T L + I + T EK L+
Sbjct: 80 LAEEKYREF----KEWEVLGLRVAATTGDYDSTDEWLGRYDIIVATAEKFDSLLRH--GA 133
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
+ I ++ L+V DE H++ RG LE +++ +L QI A+SAT+GN L+ +++
Sbjct: 134 SWIKDVKLVVADEVHLIGSYDRGATLEMILTHML---GKAQILALSATVGNAEELAEWLD 190
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNL 180
V + RP + + V ++F DGK + Y +N + VL V+
Sbjct: 191 ASLVVSDWRPVELRKGVFHLGQLFWE-DGK--IDHYPENWE--------SLVLDAVKKGK 239
Query: 181 MVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILY 240
L+F +++ + A+ L +K K E L E + D + L+ +
Sbjct: 240 QALVFVNTRRSAEKEAISLSSKV---SKLLTKPETRRLEELISSIEDNPTTEKLKRALKG 296
Query: 241 GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTL 275
GVA+HHA L+ ER LIE+A+ G +++I T TL
Sbjct: 297 GVAFHHAGLSRAERTLIEDAFRNGLIKVITATPTL 331
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 276 AAGVNLPAQRVIIRDSYVGRDF----ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDF 331
+AG+NLPA RVIIRD+ +F I + +QM+GRAGR + GE+I++ +T
Sbjct: 735 SAGINLPAFRVIIRDTKRYANFGWTDIPVLEIQQMMGRAGRPKYDKVGEAIIVARTEDPK 794
Query: 332 LRFSSMMNAGPEPISSHM 349
++ PE + S +
Sbjct: 795 KLIDRYIHGKPEKLFSML 812
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 524 KALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFAS---KVYRFCEEL 580
+ L + A +L D +N ++ + Y I L L + + ++Y+ E
Sbjct: 966 QGFLGQVKTAKVLLDWINEVPEARIYETYNIDPGDLYRILELADWLMYSLIELYKLFEPK 1025
Query: 581 PELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKE 640
++ Y L DL L + L L+ LP + RAR L NAG+ S+E I RA K+
Sbjct: 1026 EDVLQY---LRDLHLRLRHGVREELLELVKLPNIGRRRARALYNAGFRSVEDILRAKPKD 1082
Query: 641 MV 642
++
Sbjct: 1083 LL 1084
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 152/338 (44%), Gaps = 48/338 (14%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G P + ++ +I I T EK + + + ++ LI++DE H+L RGPILE
Sbjct: 1222 GDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEIHLLAS-DRGPILE 1280
Query: 88 CVVSKVLYL----KKSIQIFAMSATIGNINALSTFI----EGI-TYVENSRPTKHSEYVT 138
+VS++ Y+ K+ +++ MS + N ++ ++ G+ + + RP Y+
Sbjct: 1281 MIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWLGVKDHGLYNFPSSVRPVPLKMYI- 1339
Query: 139 VDKRVFQSFDGKSLTEIYADNLDY-SLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSN 194
DG + DNL + L + V ++ + LIF +S+
Sbjct: 1340 ---------DG------FPDNLAFCPLMKTMNKPVFMAIKQHSPDKPALIFVASRRQTRL 1384
Query: 195 LALRLQFDRFPGTKEYKKQ-----EKEDLIEALKEENDGKLSTNLEECILYGVAYHHADL 249
AL L G ++ ++ ++E+L L + D L +L+ +G+ HHA L
Sbjct: 1385 TALDLI--HLCGMEDNPRRFLNIDDEEELQYYLSQVTDDTLKLSLQ----FGIGLHHAGL 1438
Query: 250 TAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV------GRDFISLNMY 303
+R + + + +QI+ TSTLA GVNLPA VII+ + G + L
Sbjct: 1439 VQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDI 1498
Query: 304 KQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAG 341
QM+GRAGR +G +I+ K + + +N G
Sbjct: 1499 LQMMGRAGRPAYDTTGTAIVYTKESKKMF-YKHFLNVG 1535
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 134/283 (47%), Gaps = 45/283 (15%)
Query: 33 TKRQLNKKSIYICTIEKGSKLIGSLIQENR-IDEIGLIVIDEFHMLNEPQRGPILECVVS 91
TK ++ + + T EK + +N + ++ L++IDE H+L+E RG ++E +V+
Sbjct: 387 TKAEILATQVIVTTPEKWDVVTRKANGDNDLVSKVKLLIIDEVHLLHE-DRGSVIETLVA 445
Query: 92 KVLYLKKS----IQIFAMSATIGNINALSTFIE-----GITYVENSRPTKHSEYVTVDKR 142
+ L +S I+I +SAT+ N ++ F+ G+ Y + S K E + R
Sbjct: 446 RTLRQVESSQSMIRIIGLSATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLEQQLLGCR 505
Query: 143 VFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSS------------KI 190
GK+ + +N+D D + ++Q V++F S K+
Sbjct: 506 ------GKAGSRQSKENID----KVAYDKLSEMIQRGYQVMVFVHSRKETVKSARNFIKL 555
Query: 191 ACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLT 250
A SN + L F P EK+ +L + D +++E +G HHA +
Sbjct: 556 AESNHEVDL-FAPDP-------IEKDKYSRSLVKNRD----KDMKEIFQFGFGIHHAGMA 603
Query: 251 AGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV 293
+R L E+ + G ++++CCT+TLA GVNLPA VII+ + V
Sbjct: 604 RSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIKGTQV 646
>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1401 PE=3 SV=1
Length = 808
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 136/325 (41%), Gaps = 59/325 (18%)
Query: 54 IGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNIN 113
I LI+ R+ +IG +VIDE H LN +RG L+ ++ ++ +L K Q +SATIGN
Sbjct: 318 IDYLIRTKRLKDIGTVVIDEIHSLNLEERGARLDGLIGRLRFLFKEAQKIYLSATIGNPK 377
Query: 114 ALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVL 173
L+ + + N RP ++ K F
Sbjct: 378 ELAKQLNAKLVLYNGRPVPLERHIIFCKNDFAKL-------------------------- 411
Query: 174 HLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTN 233
N++ I S R Q F Y ++ E L +ALK +
Sbjct: 412 -----NIIKEIVKREWQNISKFGYRGQCLIFT----YSRKRAEYLAKALKSKG------- 455
Query: 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV 293
++H + +RR +E+ + +Q + T+ L+AGV+ PA VI+ +
Sbjct: 456 ------IKAEFYHGGMEYIKRRKVEDDFANQKIQCVVTTAALSAGVDFPASTVILESLAM 509
Query: 294 GRDFISLNMYKQMVGRAGRTGLQESGESIMLC----------KTMQDFLRFSSMMNAGPE 343
G D+++ ++QM GRAGR G+ E G+ +L + +D + F ++NA PE
Sbjct: 510 GADWLNPAEFQQMCGRAGRKGMHEIGKVYLLVEIGKKYHAKMENTEDEVAF-KLLNAVPE 568
Query: 344 PISSHMDPPTLVDLILEVVAANLCS 368
+ + + IL ++A + +
Sbjct: 569 DVKVEYNEDEEEEQILATISAGITN 593
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 137/305 (44%), Gaps = 54/305 (17%)
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI-----T 123
+V+DE H L + RGP+ E V+ L L +++ ++SAT+ N +I+ +
Sbjct: 129 VVMDEVHFLADRMRGPVWEEVI---LQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTV 185
Query: 124 YVENSRPTKHSEYVTVDKRVFQSFD---GKSLTEIY--------------ADNL-DYS-- 163
V+ RP ++V V KR+F FD G++ + AD + D+
Sbjct: 186 VVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMADWQPR 245
Query: 164 LTGSG----------PDAVLHL-VQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKK 212
GSG P+ + L +G L + F S+ C A Q R P + +
Sbjct: 246 RRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCD--AAVTQCLRSP-LRLTSE 302
Query: 213 QEKEDLIEALKEE----NDGKLST----NLEECILYGVAYHHADLTAGERRLIEEAYLAG 264
+E+ + E + D L+ E +L G+A HHA + R +EE + AG
Sbjct: 303 EERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAG 362
Query: 265 TLQIICCTSTLAAGVNLPAQRVIIRD--SYVGRDFISL--NMYKQMVGRAGRTGLQESGE 320
++ + T TLA G+N+PA+ V++ + G + L Y Q+ GRAGR G+ G
Sbjct: 363 LVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGH 422
Query: 321 SIMLC 325
++++
Sbjct: 423 AVVIW 427
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 150/346 (43%), Gaps = 67/346 (19%)
Query: 66 IGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI------ 119
+ IV+DE H L++ RG + E +V +Y K +Q+ +SAT+ N + L+ +I
Sbjct: 269 VDAIVLDEVHYLSDISRGTVWEEIV---IYCPKEVQLICLSATVANPDELAGWIGEIHGK 325
Query: 120 -EGITYVENSRP------TKHS-------EYVTVDKRVFQSF--------------DG-- 149
E +T P TKHS + + V++++ ++ DG
Sbjct: 326 TELVTSTRRPVPLTWYFSTKHSLLPLLDEKGINVNRKLSLNYLQLSASEARFRDDDDGYR 385
Query: 150 -----KSLTEIYADNL----DYSLTGSG------------PDAVLHLVQGNLMVLI-FCS 187
K + +NL DY L+ + D + HL N++ I F
Sbjct: 386 KRRSKKRGGDTSYNNLVNVTDYPLSKNEINKIRRSQVPQISDTLWHLQGKNMLPAIWFIF 445
Query: 188 SKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHA 247
++ C A + F + +K E E ++ + + + E+ +L G+A HHA
Sbjct: 446 NRRGCD--AAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESAEKGLLRGIAAHHA 503
Query: 248 DLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR--DSYVGRDFISL--NMY 303
+ IEE + G ++++ T TLAAG+N+PA+ +I G + I L N
Sbjct: 504 GCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGNERIELGPNEL 563
Query: 304 KQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHM 349
QM GRAGR G+ E G ++++ + ++ AG +P+ S
Sbjct: 564 YQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQF 609
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,431,450
Number of Sequences: 539616
Number of extensions: 9694774
Number of successful extensions: 26106
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 25703
Number of HSP's gapped (non-prelim): 330
length of query: 693
length of database: 191,569,459
effective HSP length: 125
effective length of query: 568
effective length of database: 124,117,459
effective search space: 70498716712
effective search space used: 70498716712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)