Query psy15878
Match_columns 693
No_of_seqs 502 out of 3343
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 23:54:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0950|consensus 100.0 8.9E-87 1.9E-91 728.9 38.2 644 2-665 282-954 (1008)
2 PRK02362 ski2-like helicase; P 100.0 1.7E-82 3.7E-87 738.6 60.0 614 1-663 79-706 (737)
3 PRK00254 ski2-like helicase; P 100.0 1.2E-78 2.6E-83 704.7 56.7 611 1-661 80-699 (720)
4 PRK01172 ski2-like helicase; P 100.0 3.6E-78 7.7E-83 698.0 58.1 588 1-665 77-670 (674)
5 COG1204 Superfamily II helicas 100.0 1.6E-71 3.6E-76 631.6 36.6 624 1-664 88-733 (766)
6 KOG0952|consensus 100.0 6.3E-60 1.4E-64 519.0 22.8 582 1-642 176-814 (1230)
7 KOG0951|consensus 100.0 1.9E-52 4E-57 464.5 26.0 588 1-653 376-1000(1674)
8 COG1202 Superfamily II helicas 100.0 1.4E-50 3.1E-55 420.0 32.1 506 1-598 273-827 (830)
9 KOG0947|consensus 100.0 2.4E-38 5.2E-43 345.1 25.6 355 1-384 352-774 (1248)
10 PRK09751 putative ATP-dependen 100.0 4.7E-37 1E-41 365.5 32.8 408 1-431 49-493 (1490)
11 PRK13767 ATP-dependent helicas 100.0 2E-36 4.3E-41 355.8 32.3 344 17-411 124-476 (876)
12 KOG0948|consensus 100.0 3.4E-37 7.3E-42 328.6 18.7 355 1-384 184-589 (1041)
13 COG1201 Lhr Lhr-like helicases 100.0 3.3E-34 7E-39 322.1 27.1 352 1-414 85-445 (814)
14 TIGR03817 DECH_helic helicase/ 100.0 5.3E-34 1.2E-38 328.8 28.7 352 1-417 93-459 (742)
15 COG4581 Superfamily II RNA hel 100.0 2.5E-33 5.3E-38 318.9 28.3 363 1-384 174-589 (1041)
16 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.6E-33 5.6E-38 322.7 27.3 351 2-449 58-427 (819)
17 PRK11664 ATP-dependent RNA hel 100.0 4.2E-33 9.2E-38 321.8 27.6 352 2-449 61-430 (812)
18 KOG0331|consensus 100.0 9.3E-34 2E-38 302.2 20.3 269 1-333 177-452 (519)
19 KOG0330|consensus 100.0 6.5E-34 1.4E-38 284.5 16.5 273 1-337 141-415 (476)
20 PTZ00110 helicase; Provisional 100.0 5E-33 1.1E-37 312.1 22.3 269 1-334 215-489 (545)
21 PLN00206 DEAD-box ATP-dependen 100.0 1.3E-32 2.7E-37 308.0 23.1 269 1-336 208-482 (518)
22 PRK11776 ATP-dependent RNA hel 100.0 1.2E-32 2.5E-37 305.8 22.3 263 1-334 84-354 (460)
23 PRK10590 ATP-dependent RNA hel 100.0 1.4E-32 3E-37 304.0 22.3 266 1-334 87-357 (456)
24 PRK11131 ATP-dependent RNA hel 100.0 4.1E-32 8.8E-37 318.0 27.2 324 38-451 162-509 (1294)
25 PRK11192 ATP-dependent RNA hel 100.0 4.3E-32 9.3E-37 299.3 22.7 269 1-334 85-357 (434)
26 PRK04837 ATP-dependent RNA hel 100.0 1.9E-32 4.1E-37 300.7 19.7 269 1-334 95-367 (423)
27 KOG0922|consensus 100.0 3.1E-32 6.7E-37 291.4 20.3 355 10-452 113-485 (674)
28 PRK04537 ATP-dependent RNA hel 100.0 4E-32 8.7E-37 305.8 22.3 268 1-333 96-368 (572)
29 COG0513 SrmB Superfamily II DN 100.0 5.7E-32 1.2E-36 300.7 22.2 265 1-334 111-386 (513)
30 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.6E-31 5.6E-36 312.6 26.9 350 10-450 129-499 (1283)
31 KOG0326|consensus 100.0 1.3E-31 2.7E-36 261.2 18.6 280 1-349 165-452 (459)
32 PTZ00424 helicase 45; Provisio 100.0 1E-31 2.3E-36 293.8 19.1 269 1-336 108-381 (401)
33 PRK01297 ATP-dependent RNA hel 100.0 3.3E-31 7.2E-36 294.9 22.6 268 1-333 174-446 (475)
34 PRK11634 ATP-dependent RNA hel 100.0 6E-31 1.3E-35 297.9 24.4 268 1-335 86-358 (629)
35 KOG0923|consensus 100.0 6.2E-31 1.3E-35 277.9 19.9 350 10-449 328-698 (902)
36 KOG0328|consensus 100.0 1.8E-30 3.9E-35 249.2 21.1 269 1-334 107-378 (400)
37 KOG0333|consensus 100.0 1.6E-30 3.5E-35 268.7 21.2 267 1-334 334-629 (673)
38 COG1643 HrpA HrpA-like helicas 100.0 2E-30 4.3E-35 294.0 21.2 346 10-449 112-479 (845)
39 PLN03137 ATP-dependent DNA hel 100.0 9.4E-30 2E-34 291.5 22.3 268 1-340 512-798 (1195)
40 TIGR00614 recQ_fam ATP-depende 100.0 3.2E-29 6.8E-34 278.0 24.6 269 1-342 63-346 (470)
41 PRK11057 ATP-dependent DNA hel 100.0 2E-28 4.2E-33 278.8 25.5 266 1-342 77-356 (607)
42 KOG0338|consensus 100.0 5.2E-29 1.1E-33 256.6 18.3 276 1-340 264-544 (691)
43 KOG0924|consensus 100.0 1.7E-28 3.7E-33 259.7 22.5 350 10-451 418-791 (1042)
44 KOG0342|consensus 100.0 5.7E-28 1.2E-32 249.2 25.0 272 1-339 166-446 (543)
45 KOG0343|consensus 100.0 2.2E-28 4.8E-33 254.0 21.7 272 1-343 153-437 (758)
46 KOG0340|consensus 100.0 1.2E-28 2.6E-33 244.1 17.6 272 1-335 87-367 (442)
47 TIGR01389 recQ ATP-dependent D 100.0 6.2E-28 1.3E-32 275.4 24.5 267 1-342 65-344 (591)
48 KOG0951|consensus 100.0 1.4E-28 3.1E-33 275.0 17.6 394 3-451 1200-1620(1674)
49 KOG0336|consensus 100.0 6.3E-28 1.4E-32 242.2 19.0 270 2-338 307-581 (629)
50 PHA02653 RNA helicase NPH-II; 100.0 2.9E-27 6.2E-32 266.6 26.2 339 1-448 234-594 (675)
51 KOG0339|consensus 100.0 7.3E-28 1.6E-32 247.7 18.7 269 1-338 308-584 (731)
52 KOG0335|consensus 100.0 1.1E-27 2.3E-32 251.5 19.7 267 1-328 164-444 (482)
53 KOG0345|consensus 100.0 3.4E-27 7.4E-32 241.6 22.5 276 1-339 91-373 (567)
54 PRK13766 Hef nuclease; Provisi 99.9 3.2E-26 6.9E-31 270.2 28.5 108 178-328 364-479 (773)
55 KOG0332|consensus 99.9 3.9E-26 8.3E-31 227.6 20.8 270 1-332 172-447 (477)
56 KOG0347|consensus 99.9 4.7E-27 1E-31 244.2 10.2 291 1-338 275-579 (731)
57 COG0514 RecQ Superfamily II DN 99.9 1.2E-25 2.7E-30 244.6 19.9 269 1-342 69-350 (590)
58 KOG0341|consensus 99.9 2.8E-26 6E-31 229.0 12.9 264 1-328 258-528 (610)
59 KOG0920|consensus 99.9 5.5E-26 1.2E-30 256.6 16.7 345 38-448 263-637 (924)
60 COG1111 MPH1 ERCC4-like helica 99.9 2.2E-25 4.8E-30 231.9 19.0 291 1-333 70-485 (542)
61 KOG0348|consensus 99.9 9.4E-26 2E-30 233.9 15.7 315 1-341 223-565 (708)
62 KOG4284|consensus 99.9 1.5E-25 3.2E-30 236.5 17.2 266 2-328 106-379 (980)
63 TIGR00643 recG ATP-dependent D 99.9 4E-25 8.8E-30 252.7 22.1 257 1-327 296-565 (630)
64 PRK10917 ATP-dependent DNA hel 99.9 3.8E-25 8.3E-30 254.5 21.8 249 1-327 322-588 (681)
65 TIGR00580 mfd transcription-re 99.9 5.6E-25 1.2E-29 256.4 21.9 250 1-328 512-770 (926)
66 TIGR02621 cas3_GSU0051 CRISPR- 99.9 2.6E-24 5.6E-29 243.9 24.2 247 1-316 74-380 (844)
67 PRK10689 transcription-repair 99.9 1.5E-24 3.3E-29 258.0 22.6 251 1-328 661-919 (1147)
68 TIGR01587 cas3_core CRISPR-ass 99.9 2.3E-24 4.9E-29 232.1 20.4 230 39-328 94-336 (358)
69 KOG0350|consensus 99.9 1.6E-24 3.5E-29 223.5 15.2 283 1-340 227-551 (620)
70 KOG0327|consensus 99.9 8.3E-24 1.8E-28 213.1 19.2 276 1-345 106-389 (397)
71 KOG0334|consensus 99.9 2.9E-24 6.2E-29 240.7 16.9 267 1-333 450-724 (997)
72 KOG0925|consensus 99.9 4.2E-24 9.2E-29 219.3 16.6 350 9-451 108-481 (699)
73 KOG0926|consensus 99.9 3.3E-24 7.1E-29 231.0 16.4 354 38-451 348-798 (1172)
74 KOG0949|consensus 99.9 1.2E-23 2.7E-28 230.9 17.9 300 39-349 605-1066(1330)
75 COG1205 Distinct helicase fami 99.9 1.4E-23 2.9E-28 243.3 19.0 279 1-328 127-422 (851)
76 KOG0344|consensus 99.9 3.4E-23 7.4E-28 218.9 12.8 274 1-334 221-500 (593)
77 KOG0346|consensus 99.9 2.2E-22 4.8E-27 204.7 15.7 264 1-328 105-410 (569)
78 KOG0337|consensus 99.9 4.6E-23 9.9E-28 208.7 8.5 271 1-336 102-375 (529)
79 PHA02558 uvsW UvsW helicase; P 99.9 1.1E-21 2.4E-26 219.0 19.2 254 1-314 170-440 (501)
80 TIGR03158 cas3_cyano CRISPR-as 99.9 2E-21 4.2E-26 207.6 20.2 253 1-311 51-357 (357)
81 KOG0351|consensus 99.9 2.7E-21 5.9E-26 222.6 18.0 270 1-341 316-604 (941)
82 KOG0354|consensus 99.9 8.6E-21 1.9E-25 209.1 18.7 118 178-328 412-529 (746)
83 COG1200 RecG RecG-like helicas 99.8 9.6E-20 2.1E-24 198.1 23.0 257 1-328 323-591 (677)
84 KOG0352|consensus 99.8 1.9E-20 4E-25 189.8 12.1 272 1-342 73-375 (641)
85 TIGR00603 rad25 DNA repair hel 99.8 1.5E-19 3.3E-24 203.4 20.3 268 2-328 311-607 (732)
86 PRK09200 preprotein translocas 99.8 3.1E-19 6.7E-24 202.8 20.6 116 169-328 414-541 (790)
87 COG1197 Mfd Transcription-repa 99.8 3.9E-19 8.5E-24 203.5 21.1 245 1-328 655-913 (1139)
88 TIGR03714 secA2 accessory Sec 99.8 1.7E-18 3.6E-23 195.0 22.0 116 168-328 409-537 (762)
89 PRK09694 helicase Cas3; Provis 99.8 6.1E-18 1.3E-22 195.7 25.1 232 40-315 411-664 (878)
90 TIGR00963 secA preprotein tran 99.8 1.7E-18 3.6E-23 193.8 19.0 107 178-328 404-517 (745)
91 PRK12898 secA preprotein trans 99.8 3.2E-18 7E-23 190.5 19.9 116 169-328 459-586 (656)
92 PRK14701 reverse gyrase; Provi 99.8 1.3E-18 2.9E-23 212.1 17.7 269 1-339 134-466 (1638)
93 PRK04914 ATP-dependent helicas 99.8 2.8E-17 6.1E-22 191.4 25.4 141 169-349 481-626 (956)
94 TIGR00595 priA primosomal prot 99.8 9E-18 1.9E-22 186.2 20.4 285 1-328 37-381 (505)
95 PRK09401 reverse gyrase; Revie 99.8 4.8E-18 1E-22 203.2 19.0 242 1-312 135-430 (1176)
96 KOG0349|consensus 99.8 1.2E-18 2.6E-23 176.8 10.7 278 2-328 299-615 (725)
97 COG4098 comFA Superfamily II D 99.8 1.5E-16 3.4E-21 158.0 23.6 249 2-328 157-416 (441)
98 KOG0329|consensus 99.7 4.3E-18 9.4E-23 162.0 9.7 226 1-328 122-355 (387)
99 KOG0353|consensus 99.7 2.4E-17 5.2E-22 164.8 14.6 236 38-338 185-476 (695)
100 PRK05580 primosome assembly pr 99.7 2.5E-16 5.5E-21 180.9 22.1 294 1-336 202-556 (679)
101 TIGR01054 rgy reverse gyrase. 99.7 2.2E-16 4.8E-21 189.4 17.9 224 1-292 133-407 (1171)
102 TIGR00631 uvrb excinuclease AB 99.7 2E-15 4.4E-20 171.4 17.8 111 178-328 441-553 (655)
103 PRK12906 secA preprotein trans 99.6 2.3E-15 4.9E-20 170.3 16.7 116 169-328 426-553 (796)
104 COG1061 SSL2 DNA or RNA helica 99.6 1.6E-14 3.6E-19 158.3 19.1 244 10-313 98-376 (442)
105 PRK05298 excinuclease ABC subu 99.6 1.2E-14 2.6E-19 166.5 17.2 111 178-328 445-557 (652)
106 PRK12904 preprotein translocas 99.6 5.3E-14 1.2E-18 159.9 20.4 117 168-328 415-573 (830)
107 KOG4150|consensus 99.6 3.7E-14 8.1E-19 148.7 17.5 288 38-370 383-686 (1034)
108 PRK13104 secA preprotein trans 99.6 5.1E-14 1.1E-18 160.2 20.0 107 178-328 443-587 (896)
109 cd00079 HELICc Helicase superf 99.6 1.6E-14 3.4E-19 131.6 11.4 105 178-324 27-131 (131)
110 KOG0953|consensus 99.5 9.5E-14 2.1E-18 146.1 15.4 257 1-345 227-492 (700)
111 PRK11448 hsdR type I restricti 99.5 2E-13 4.3E-18 163.0 20.1 116 178-326 697-813 (1123)
112 PF00271 Helicase_C: Helicase 99.5 3.1E-14 6.8E-19 117.3 8.8 71 240-314 8-78 (78)
113 smart00611 SEC63 Domain of unk 99.5 6.1E-14 1.3E-18 147.9 12.5 209 422-667 2-211 (312)
114 COG1203 CRISPR-associated heli 99.5 2.8E-13 6E-18 157.5 15.4 203 66-328 339-550 (733)
115 KOG0952|consensus 99.5 1E-14 2.2E-19 163.3 2.4 234 1-257 985-1229(1230)
116 PRK13107 preprotein translocas 99.4 2.5E-12 5.4E-17 146.1 18.7 107 178-328 448-591 (908)
117 PRK12900 secA preprotein trans 99.4 2.3E-12 5E-17 146.9 12.5 164 100-328 534-711 (1025)
118 COG0556 UvrB Helicase subunit 99.4 8.5E-12 1.9E-16 131.4 14.9 112 178-328 445-557 (663)
119 smart00490 HELICc helicase sup 99.3 5.1E-12 1.1E-16 104.7 8.6 71 240-314 12-82 (82)
120 PLN03142 Probable chromatin-re 99.3 4.9E-11 1.1E-15 140.2 19.4 111 178-328 486-599 (1033)
121 COG1198 PriA Primosomal protei 99.3 1.8E-10 3.9E-15 130.3 18.9 292 9-339 262-613 (730)
122 KOG0921|consensus 99.2 1.1E-11 2.3E-16 136.7 8.1 340 39-446 472-864 (1282)
123 TIGR00596 rad1 DNA repair prot 99.2 3.5E-10 7.7E-15 130.5 19.9 104 548-661 698-809 (814)
124 PF14520 HHH_5: Helix-hairpin- 99.1 7.3E-11 1.6E-15 91.3 5.4 57 605-662 4-60 (60)
125 COG4096 HsdR Type I site-speci 99.1 5.5E-09 1.2E-13 116.4 19.6 262 39-349 256-562 (875)
126 PRK12899 secA preprotein trans 99.1 4.1E-09 8.9E-14 120.5 18.2 107 178-328 567-681 (970)
127 cd00268 DEADc DEAD-box helicas 99.1 3.8E-10 8.2E-15 111.3 8.4 106 1-111 81-186 (203)
128 PF02889 Sec63: Sec63 Brl doma 99.0 1E-09 2.2E-14 116.0 9.8 206 424-665 1-206 (314)
129 KOG1123|consensus 99.0 2E-09 4.3E-14 112.5 11.2 250 6-314 362-635 (776)
130 TIGR00348 hsdR type I site-spe 99.0 8.5E-09 1.8E-13 119.0 17.1 112 179-313 514-634 (667)
131 PF00270 DEAD: DEAD/DEAH box h 99.0 3.9E-10 8.4E-15 107.6 4.2 107 1-110 56-163 (169)
132 PRK12326 preprotein translocas 98.9 2.4E-08 5.1E-13 111.6 17.8 107 178-328 426-547 (764)
133 PRK13103 secA preprotein trans 98.9 1.5E-08 3.2E-13 116.0 12.7 76 1-78 135-215 (913)
134 TIGR02562 cas3_yersinia CRISPR 98.9 9E-08 1.9E-12 110.6 18.6 73 241-320 788-886 (1110)
135 PRK12903 secA preprotein trans 98.8 1E-07 2.2E-12 108.1 17.0 106 178-328 425-539 (925)
136 KOG0385|consensus 98.8 1.4E-07 3.1E-12 103.6 17.4 83 242-328 514-599 (971)
137 PRK08609 hypothetical protein; 98.7 1.6E-08 3.4E-13 114.2 7.7 89 599-690 81-177 (570)
138 PRK12766 50S ribosomal protein 98.6 7.2E-08 1.6E-12 92.9 5.4 55 606-661 3-57 (232)
139 COG1110 Reverse gyrase [DNA re 98.5 1.6E-06 3.6E-11 98.6 16.4 220 1-291 137-414 (1187)
140 TIGR01407 dinG_rel DnaQ family 98.5 3.1E-06 6.7E-11 101.0 18.5 135 172-343 666-829 (850)
141 KOG0387|consensus 98.4 1.5E-05 3.2E-10 88.7 17.3 118 170-328 533-658 (923)
142 COG1796 POL4 DNA polymerase IV 98.3 8.3E-07 1.8E-11 89.3 6.9 92 595-689 82-181 (326)
143 CHL00122 secA preprotein trans 98.3 1.5E-05 3.3E-10 91.4 17.5 75 1-77 129-208 (870)
144 KOG0384|consensus 98.3 1.3E-05 2.9E-10 92.8 16.8 161 178-389 698-868 (1373)
145 KOG0389|consensus 98.2 1.6E-05 3.5E-10 88.3 13.8 98 240-342 802-902 (941)
146 PRK14873 primosome assembly pr 98.2 6.7E-05 1.5E-09 86.0 18.9 95 2-110 201-304 (665)
147 cd00141 NT_POLXc Nucleotidyltr 98.2 3.5E-06 7.6E-11 87.9 7.2 80 597-690 76-162 (307)
148 COG4889 Predicted helicase [Ge 98.1 1.6E-06 3.5E-11 96.5 4.0 118 180-324 461-584 (1518)
149 PF12826 HHH_2: Helix-hairpin- 98.1 2.5E-06 5.3E-11 66.7 3.8 52 609-662 6-57 (64)
150 cd00046 DEXDc DEAD-like helica 98.1 8.9E-06 1.9E-10 74.0 8.0 102 2-109 43-144 (144)
151 PRK12902 secA preprotein trans 98.1 0.00017 3.7E-09 82.9 19.0 80 1-82 138-223 (939)
152 KOG1000|consensus 98.1 5.6E-05 1.2E-09 79.9 13.4 125 178-342 491-617 (689)
153 PRK12901 secA preprotein trans 98.0 2E-05 4.3E-10 91.3 10.7 164 100-328 564-741 (1112)
154 PRK08074 bifunctional ATP-depe 98.0 9E-05 1.9E-09 89.2 16.7 137 172-344 744-909 (928)
155 smart00487 DEXDc DEAD-like hel 98.0 1.4E-05 2.9E-10 77.6 7.8 109 3-117 68-179 (201)
156 COG1948 MUS81 ERCC4-type nucle 98.0 1E-05 2.2E-10 79.8 6.6 191 396-661 34-235 (254)
157 KOG0390|consensus 98.0 0.0004 8.6E-09 79.3 19.8 86 239-328 619-707 (776)
158 COG1199 DinG Rad3-related DNA 97.9 5.9E-05 1.3E-09 88.0 12.2 125 178-342 478-631 (654)
159 KOG0392|consensus 97.9 0.00036 7.9E-09 81.2 16.8 111 179-328 1340-1454(1549)
160 PF02399 Herpes_ori_bp: Origin 97.8 0.00034 7.3E-09 79.7 15.6 106 178-328 281-388 (824)
161 PRK07246 bifunctional ATP-depe 97.8 0.00079 1.7E-08 79.8 18.4 122 177-340 645-796 (820)
162 PF13307 Helicase_C_2: Helicas 97.8 0.00016 3.5E-09 68.7 10.4 128 173-338 2-160 (167)
163 PRK04301 radA DNA repair and r 97.8 6.3E-05 1.4E-09 79.4 7.8 70 606-676 6-76 (317)
164 smart00483 POLXc DNA polymeras 97.7 7.8E-05 1.7E-09 78.8 7.5 82 594-689 77-165 (334)
165 PRK11747 dinG ATP-dependent DN 97.7 0.00035 7.6E-09 81.4 13.4 131 173-344 528-690 (697)
166 PRK07956 ligA NAD-dependent DN 97.6 0.00013 2.9E-09 83.6 8.6 67 591-661 433-500 (665)
167 TIGR01954 nusA_Cterm_rpt trans 97.6 0.00018 3.8E-09 53.3 6.2 49 614-663 1-49 (50)
168 TIGR00575 dnlj DNA ligase, NAD 97.6 0.00018 3.9E-09 82.4 8.9 66 591-660 420-486 (652)
169 PF14229 DUF4332: Domain of un 97.5 0.00024 5.2E-09 63.4 6.5 43 605-647 52-94 (122)
170 PRK14670 uvrC excinuclease ABC 97.5 0.00045 9.7E-09 77.5 9.6 54 606-661 514-567 (574)
171 PF11731 Cdd1: Pathogenicity l 97.4 0.00019 4E-09 59.6 4.6 44 602-645 8-51 (93)
172 TIGR00604 rad3 DNA repair heli 97.4 0.002 4.2E-08 75.7 14.9 118 178-327 521-673 (705)
173 TIGR02236 recomb_radA DNA repa 97.4 0.00033 7.2E-09 73.8 7.7 68 608-676 1-69 (310)
174 PRK14666 uvrC excinuclease ABC 97.4 0.00067 1.5E-08 76.7 9.9 57 606-664 637-693 (694)
175 PF06862 DUF1253: Protein of u 97.4 0.0075 1.6E-07 65.3 17.2 252 38-338 130-424 (442)
176 PF10391 DNA_pol_lambd_f: Fing 97.4 0.00019 4E-09 53.1 3.5 30 606-635 2-31 (52)
177 TIGR00084 ruvA Holliday juncti 97.4 0.00038 8.3E-09 67.2 6.6 56 606-663 72-130 (191)
178 PRK00116 ruvA Holliday junctio 97.3 0.0005 1.1E-08 66.7 6.6 58 606-664 73-132 (192)
179 PRK14667 uvrC excinuclease ABC 97.3 0.00086 1.9E-08 75.2 9.0 52 606-660 514-565 (567)
180 PRK14672 uvrC excinuclease ABC 97.3 0.00097 2.1E-08 75.1 9.2 56 606-663 608-663 (691)
181 PRK07758 hypothetical protein; 97.3 0.00087 1.9E-08 55.3 6.5 51 611-662 39-89 (95)
182 PTZ00035 Rad51 protein; Provis 97.3 0.00085 1.8E-08 71.1 8.3 66 611-677 28-93 (337)
183 PLN03187 meiotic recombination 97.2 0.001 2.2E-08 70.3 8.1 67 610-677 35-101 (344)
184 TIGR02238 recomb_DMC1 meiotic 97.2 0.00094 2E-08 69.9 7.8 65 612-677 7-71 (313)
185 PRK14351 ligA NAD-dependent DN 97.1 0.0012 2.6E-08 75.9 8.5 67 590-660 449-516 (689)
186 PRK14669 uvrC excinuclease ABC 96.8 0.0055 1.2E-07 69.6 9.5 52 606-661 552-603 (624)
187 PRK14973 DNA topoisomerase I; 96.7 0.0046 1E-07 73.6 8.8 65 594-663 869-933 (936)
188 PRK08097 ligB NAD-dependent DN 96.7 0.0046 1E-07 69.0 8.3 66 591-660 413-479 (562)
189 PRK14668 uvrC excinuclease ABC 96.7 0.0054 1.2E-07 69.3 8.9 51 606-658 525-575 (577)
190 PRK14605 ruvA Holliday junctio 96.7 0.0044 9.6E-08 60.0 7.1 58 606-664 73-132 (194)
191 PRK02515 psbU photosystem II c 96.7 0.0035 7.5E-08 55.1 5.6 52 603-663 58-110 (132)
192 TIGR00575 dnlj DNA ligase, NAD 96.7 0.0052 1.1E-07 70.6 8.6 56 604-661 496-551 (652)
193 PRK13482 DNA integrity scannin 96.6 0.0055 1.2E-07 63.8 7.2 62 602-665 283-344 (352)
194 PLN03186 DNA repair protein RA 96.5 0.0063 1.4E-07 64.4 7.7 70 607-677 29-98 (342)
195 TIGR02239 recomb_RAD51 DNA rep 96.5 0.0058 1.3E-07 64.2 7.4 65 611-676 6-70 (316)
196 PF04851 ResIII: Type III rest 96.5 0.0034 7.3E-08 60.2 5.2 64 38-110 110-183 (184)
197 TIGR00426 competence protein C 96.4 0.0069 1.5E-07 48.1 5.1 45 606-659 16-66 (69)
198 KOG4439|consensus 96.3 0.12 2.7E-06 57.7 15.8 83 242-328 773-858 (901)
199 PF03118 RNA_pol_A_CTD: Bacter 96.3 0.005 1.1E-07 48.3 3.8 48 613-661 18-65 (66)
200 PF00176 SNF2_N: SNF2 family N 96.3 0.0049 1.1E-07 64.3 4.9 107 4-117 72-182 (299)
201 PRK07956 ligA NAD-dependent DN 96.2 0.011 2.3E-07 68.2 7.9 52 608-661 513-564 (665)
202 PRK00558 uvrC excinuclease ABC 96.2 0.0075 1.6E-07 68.7 6.1 53 606-660 543-595 (598)
203 TIGR01259 comE comEA protein. 96.2 0.0094 2E-07 53.0 5.4 47 603-658 65-116 (120)
204 PF07652 Flavi_DEAD: Flaviviru 96.1 0.012 2.6E-07 53.4 6.0 68 38-111 71-138 (148)
205 COG0610 Type I site-specific r 96.1 0.069 1.5E-06 64.5 14.3 76 246-326 573-651 (962)
206 COG0553 HepA Superfamily II DN 96.0 0.049 1.1E-06 65.9 12.2 120 169-328 694-822 (866)
207 KOG0391|consensus 95.9 0.032 7E-07 65.2 9.5 111 178-328 1275-1387(1958)
208 COG0322 UvrC Nuclease subunit 95.9 0.024 5.2E-07 63.7 8.5 78 558-659 503-580 (581)
209 PRK14606 ruvA Holliday junctio 95.9 0.013 2.9E-07 56.3 5.4 59 606-664 73-132 (188)
210 PRK14351 ligA NAD-dependent DN 95.8 0.029 6.3E-07 64.8 8.5 51 609-661 531-581 (689)
211 PRK14350 ligA NAD-dependent DN 95.7 0.034 7.5E-07 63.9 8.7 66 591-660 424-490 (669)
212 PRK14602 ruvA Holliday junctio 95.7 0.014 3.1E-07 56.9 4.8 58 606-664 74-133 (203)
213 PRK13901 ruvA Holliday junctio 95.7 0.016 3.4E-07 55.8 4.9 56 606-664 72-131 (196)
214 COG3743 Uncharacterized conser 95.6 0.025 5.4E-07 49.7 5.6 58 606-663 67-127 (133)
215 TIGR03117 cas_csf4 CRISPR-asso 95.6 0.13 2.7E-06 58.9 12.7 118 172-327 462-616 (636)
216 PRK14973 DNA topoisomerase I; 95.6 0.02 4.4E-07 68.3 6.6 59 606-665 802-861 (936)
217 PF04994 TfoX_C: TfoX C-termin 95.6 0.0093 2E-07 48.9 2.6 50 607-656 4-53 (81)
218 PRK14671 uvrC excinuclease ABC 95.5 0.021 4.5E-07 65.3 6.1 50 606-659 569-618 (621)
219 KOG0388|consensus 95.5 0.079 1.7E-06 59.1 9.9 111 178-328 1043-1154(1185)
220 PRK14603 ruvA Holliday junctio 95.4 0.018 4E-07 55.8 4.6 56 606-664 72-131 (197)
221 PRK14601 ruvA Holliday junctio 95.4 0.021 4.5E-07 54.6 4.8 57 606-664 73-132 (183)
222 PRK14604 ruvA Holliday junctio 95.4 0.02 4.3E-07 55.5 4.7 57 606-664 73-132 (195)
223 PF00633 HHH: Helix-hairpin-he 95.4 0.013 2.8E-07 38.0 2.2 24 601-624 6-29 (30)
224 COG0653 SecA Preprotein transl 95.4 0.015 3.2E-07 67.1 4.2 111 178-328 428-545 (822)
225 PRK14600 ruvA Holliday junctio 95.2 0.019 4.1E-07 55.1 3.7 55 606-664 73-131 (186)
226 TIGR03491 RecB family nuclease 95.0 0.028 6E-07 62.5 5.0 59 606-665 207-265 (457)
227 PF04408 HA2: Helicase associa 94.8 0.024 5.3E-07 48.9 3.2 44 403-451 2-45 (102)
228 COG0272 Lig NAD-dependent DNA 94.8 0.074 1.6E-06 59.8 7.6 94 591-688 433-551 (667)
229 smart00492 HELICc3 helicase su 94.8 0.16 3.6E-06 46.5 8.7 81 243-324 25-135 (141)
230 PF00633 HHH: Helix-hairpin-he 94.8 0.04 8.7E-07 35.7 3.2 29 629-658 1-29 (30)
231 smart00847 HA2 Helicase associ 94.6 0.038 8.2E-07 46.6 3.8 42 403-449 2-43 (92)
232 COG0632 RuvA Holliday junction 94.4 0.047 1E-06 52.7 4.2 56 606-661 73-129 (201)
233 COG2251 Predicted nuclease (Re 94.3 0.053 1.2E-06 57.6 4.8 57 606-663 225-281 (474)
234 COG1555 ComEA DNA uptake prote 93.8 0.087 1.9E-06 48.7 4.7 49 602-659 93-146 (149)
235 COG0272 Lig NAD-dependent DNA 93.7 0.17 3.7E-06 57.0 7.6 51 609-661 514-564 (667)
236 PF12836 HHH_3: Helix-hairpin- 93.5 0.071 1.5E-06 41.7 3.0 46 603-657 11-61 (65)
237 KOG2841|consensus 93.3 0.14 2.9E-06 49.8 5.1 56 606-663 195-250 (254)
238 PRK10917 ATP-dependent DNA hel 93.1 0.4 8.8E-06 56.1 9.7 81 178-290 309-390 (681)
239 smart00491 HELICc2 helicase su 93.1 0.4 8.6E-06 44.1 7.8 72 252-324 31-136 (142)
240 PRK03352 DNA polymerase IV; Va 93.0 0.14 3.1E-06 54.7 5.6 52 606-660 177-228 (346)
241 TIGR00595 priA primosomal prot 93.0 0.51 1.1E-05 53.1 9.9 80 174-289 20-99 (505)
242 PRK03858 DNA polymerase IV; Va 93.0 0.2 4.3E-06 54.7 6.6 52 606-660 173-224 (396)
243 cd01703 PolY_Pol_iota DNA Poly 92.9 0.15 3.2E-06 55.1 5.3 52 606-660 172-238 (379)
244 PRK05580 primosome assembly pr 92.9 0.51 1.1E-05 55.2 10.1 77 177-289 188-264 (679)
245 COG0177 Nth Predicted EndoIII- 92.8 0.15 3.4E-06 49.5 4.8 70 618-692 50-121 (211)
246 PF14229 DUF4332: Domain of un 92.8 0.59 1.3E-05 41.7 8.2 49 612-660 1-53 (122)
247 PRK09202 nusA transcription el 92.7 0.35 7.7E-06 53.3 8.0 59 606-665 356-414 (470)
248 PRK01216 DNA polymerase IV; Va 92.3 0.24 5.1E-06 53.0 5.9 52 606-660 178-229 (351)
249 cd01701 PolY_Rev1 DNA polymera 92.2 0.21 4.6E-06 54.6 5.6 52 606-660 222-275 (404)
250 COG1623 Predicted nucleic-acid 92.0 0.24 5.2E-06 49.5 4.9 56 606-663 293-348 (349)
251 PF11798 IMS_HHH: IMS family H 91.8 0.097 2.1E-06 34.5 1.4 22 606-627 11-32 (32)
252 PRK14873 primosome assembly pr 91.7 0.6 1.3E-05 54.1 8.7 88 167-289 172-263 (665)
253 PRK08097 ligB NAD-dependent DN 91.7 0.44 9.5E-06 53.6 7.3 49 608-661 493-541 (562)
254 TIGR03252 uncharacterized HhH- 91.7 0.76 1.6E-05 43.4 7.7 73 620-692 41-127 (177)
255 PRK03348 DNA polymerase IV; Pr 91.7 0.27 5.8E-06 54.6 5.6 52 606-660 180-231 (454)
256 PRK14350 ligA NAD-dependent DN 91.2 0.48 1E-05 54.7 7.2 51 609-660 505-561 (669)
257 TIGR00194 uvrC excinuclease AB 91.2 0.4 8.8E-06 54.4 6.5 34 606-640 541-574 (574)
258 smart00278 HhH1 Helix-hairpin- 90.8 0.22 4.8E-06 31.0 2.3 19 607-625 2-20 (26)
259 TIGR01448 recD_rel helicase, p 90.6 0.53 1.1E-05 55.4 6.9 49 611-661 89-138 (720)
260 KOG1002|consensus 90.5 1.9 4E-05 46.7 10.1 83 242-328 665-749 (791)
261 TIGR00643 recG ATP-dependent D 90.4 1.1 2.3E-05 52.2 9.2 81 178-290 283-364 (630)
262 cd00424 PolY Y-family of DNA p 90.1 0.67 1.5E-05 49.5 6.8 52 606-660 173-224 (343)
263 PRK02406 DNA polymerase IV; Va 90.0 0.69 1.5E-05 49.4 6.8 51 606-660 168-218 (343)
264 cd01702 PolY_Pol_eta DNA Polym 89.9 0.47 1E-05 50.9 5.4 52 606-660 182-236 (359)
265 COG1198 PriA Primosomal protei 89.5 0.75 1.6E-05 53.4 6.8 89 165-289 227-319 (730)
266 TIGR00580 mfd transcription-re 89.3 1.4 2.9E-05 53.3 9.1 81 178-290 499-580 (926)
267 KOG2340|consensus 89.2 1.7 3.6E-05 47.6 8.6 114 178-328 551-668 (698)
268 PF07517 SecA_DEAD: SecA DEAD- 88.8 0.23 5.1E-06 50.5 2.0 81 1-83 130-216 (266)
269 PF13871 Helicase_C_4: Helicas 88.8 1.2 2.5E-05 45.6 6.9 61 256-316 52-116 (278)
270 KOG1015|consensus 88.4 1.2 2.5E-05 51.9 7.2 131 178-328 1141-1277(1567)
271 PRK12278 50S ribosomal protein 88.3 0.5 1.1E-05 46.4 3.8 41 604-644 156-196 (221)
272 COG1110 Reverse gyrase [DNA re 88.2 1.1 2.4E-05 52.7 7.0 76 170-275 114-191 (1187)
273 cd03586 PolY_Pol_IV_kappa DNA 87.9 1.2 2.6E-05 47.3 6.8 51 606-660 171-221 (334)
274 PRK12311 rpsB 30S ribosomal pr 87.9 0.71 1.5E-05 48.3 4.8 59 604-663 261-321 (326)
275 PRK03609 umuC DNA polymerase V 87.8 0.54 1.2E-05 51.8 4.2 51 606-660 179-229 (422)
276 PF13872 AAA_34: P-loop contai 87.6 0.66 1.4E-05 47.7 4.2 72 39-110 136-221 (303)
277 cd01700 PolY_Pol_V_umuC umuC s 87.4 0.84 1.8E-05 48.8 5.2 51 606-660 176-226 (344)
278 PRK14133 DNA polymerase IV; Pr 87.4 0.93 2E-05 48.5 5.6 51 606-660 173-223 (347)
279 PRK02794 DNA polymerase IV; Pr 87.4 0.76 1.6E-05 50.6 5.0 51 606-660 209-259 (419)
280 KOG2534|consensus 87.0 2.8 6.2E-05 42.8 8.2 72 609-688 100-171 (353)
281 PRK01810 DNA polymerase IV; Va 86.4 1.1 2.4E-05 49.1 5.6 51 606-660 179-229 (407)
282 TIGR02027 rpoA DNA-directed RN 86.2 1.3 2.9E-05 45.9 5.8 49 614-663 242-290 (297)
283 PTZ00205 DNA polymerase kappa; 86.1 0.88 1.9E-05 51.0 4.6 34 606-639 309-342 (571)
284 PRK05182 DNA-directed RNA poly 85.8 1.5 3.2E-05 45.9 5.8 50 613-663 255-304 (310)
285 PRK03103 DNA polymerase IV; Re 85.7 1.4 3.1E-05 48.2 6.0 51 606-660 181-231 (409)
286 PRK10702 endonuclease III; Pro 85.5 1 2.3E-05 44.3 4.3 67 621-692 53-121 (211)
287 smart00478 ENDO3c endonuclease 85.4 2.1 4.5E-05 39.6 6.2 66 620-690 15-82 (149)
288 PRK10689 transcription-repair 84.3 2.8 6.1E-05 51.8 8.1 81 178-290 648-729 (1147)
289 PRK00024 hypothetical protein; 84.0 6.5 0.00014 39.1 9.2 67 592-660 11-86 (224)
290 PRK13910 DNA glycosylase MutY; 83.7 1.1 2.4E-05 46.3 3.7 68 620-692 16-84 (289)
291 KOG1002|consensus 83.6 3.1 6.8E-05 45.0 7.0 109 6-122 244-372 (791)
292 KOG2093|consensus 83.6 1.8 3.9E-05 49.9 5.6 98 546-660 501-600 (1016)
293 PRK13913 3-methyladenine DNA g 83.2 2.5 5.4E-05 41.7 5.8 65 627-692 66-133 (218)
294 PRK14606 ruvA Holliday junctio 81.9 4.4 9.6E-05 39.0 6.9 75 603-682 105-185 (188)
295 COG0513 SrmB Superfamily II DN 81.8 4.3 9.4E-05 45.9 7.9 73 182-290 102-181 (513)
296 PRK13901 ruvA Holliday junctio 81.5 6.5 0.00014 38.0 7.8 83 603-687 104-196 (196)
297 CHL00013 rpoA RNA polymerase a 80.8 2.2 4.8E-05 44.8 4.7 47 615-662 271-317 (327)
298 TIGR01083 nth endonuclease III 80.2 3.6 7.7E-05 39.9 5.7 67 620-691 49-117 (191)
299 COG0389 DinP Nucleotidyltransf 80.1 1.8 4E-05 46.3 4.0 39 607-645 177-215 (354)
300 PF00730 HhH-GPD: HhH-GPD supe 80.1 3.4 7.3E-05 35.7 5.0 46 619-664 18-66 (108)
301 PRK12373 NADH dehydrogenase su 80.0 2.9 6.2E-05 44.8 5.3 61 605-665 322-385 (400)
302 KOG0950|consensus 79.5 1.1 2.4E-05 52.3 2.2 99 483-582 94-193 (1008)
303 PF06733 DEAD_2: DEAD_2; Inte 79.2 1.1 2.3E-05 42.7 1.7 40 37-79 117-159 (174)
304 PRK14701 reverse gyrase; Provi 78.7 4.7 0.0001 51.6 7.5 68 178-275 121-188 (1638)
305 PRK00116 ruvA Holliday junctio 78.4 6.6 0.00014 38.0 6.9 59 603-662 105-175 (192)
306 KOG0701|consensus 78.4 2.2 4.7E-05 53.4 4.3 57 254-314 343-399 (1606)
307 PRK14601 ruvA Holliday junctio 78.4 7.5 0.00016 37.3 7.1 57 603-660 105-166 (183)
308 PRK09482 flap endonuclease-lik 78.1 3.2 6.9E-05 42.0 4.7 46 609-663 185-230 (256)
309 TIGR01054 rgy reverse gyrase. 77.8 5.7 0.00012 49.4 7.7 68 178-274 120-187 (1171)
310 cd00080 HhH2_motif Helix-hairp 77.2 2.4 5.2E-05 34.1 2.9 28 610-638 26-53 (75)
311 cd00141 NT_POLXc Nucleotidyltr 77.2 3.3 7.1E-05 43.4 4.7 53 605-657 44-102 (307)
312 cd03468 PolY_like DNA Polymera 77.1 3.4 7.4E-05 43.9 5.0 50 606-660 171-220 (335)
313 PF08148 DSHCT: DSHCT (NUC185) 77.0 5.3 0.00011 38.3 5.7 71 530-601 102-172 (180)
314 TIGR01084 mutY A/G-specific ad 76.4 3.5 7.6E-05 42.4 4.6 68 620-692 49-117 (275)
315 cd00008 53EXOc 5'-3' exonuclea 76.3 3.8 8.1E-05 41.3 4.7 45 610-663 187-231 (240)
316 TIGR03117 cas_csf4 CRISPR-asso 75.9 2.2 4.8E-05 49.0 3.3 40 38-79 181-220 (636)
317 PRK08609 hypothetical protein; 75.7 18 0.00038 41.6 10.4 54 607-660 49-108 (570)
318 PF14338 Mrr_N: Mrr N-terminal 75.2 18 0.0004 30.2 7.9 76 354-433 5-89 (92)
319 PF12482 DUF3701: Phage integr 75.1 4.8 0.0001 34.0 4.2 51 614-664 21-74 (96)
320 COG0177 Nth Predicted EndoIII- 74.6 3.5 7.5E-05 40.3 3.8 31 600-630 103-133 (211)
321 PF11372 DUF3173: Domain of un 74.6 4.5 9.7E-05 30.7 3.5 28 636-665 4-31 (59)
322 TIGR00608 radc DNA repair prot 73.8 11 0.00024 37.3 7.1 57 602-660 16-80 (218)
323 smart00483 POLXc DNA polymeras 73.7 22 0.00047 37.8 9.9 53 606-658 48-107 (334)
324 COG0632 RuvA Holliday junction 73.5 9.4 0.0002 37.1 6.4 22 603-624 105-126 (201)
325 KOG0391|consensus 73.2 2.9 6.2E-05 50.0 3.2 90 8-109 683-775 (1958)
326 smart00475 53EXOc 5'-3' exonuc 73.0 4.1 8.9E-05 41.5 4.1 44 609-661 189-232 (259)
327 KOG0338|consensus 72.8 20 0.00044 39.4 9.1 77 178-290 251-334 (691)
328 PF05225 HTH_psq: helix-turn-h 72.7 7.2 0.00016 27.9 4.1 30 534-563 7-37 (45)
329 PRK14605 ruvA Holliday junctio 72.6 11 0.00025 36.4 6.8 75 603-682 105-191 (194)
330 PF05872 DUF853: Bacterial pro 72.2 9 0.0002 41.7 6.4 60 60-121 249-313 (502)
331 PRK10880 adenine DNA glycosyla 71.7 6 0.00013 42.1 5.0 68 620-692 53-121 (350)
332 PRK14600 ruvA Holliday junctio 71.2 6.8 0.00015 37.7 4.9 58 603-661 105-170 (186)
333 PF14490 HHH_4: Helix-hairpin- 70.6 3.8 8.3E-05 34.6 2.7 52 609-661 15-67 (94)
334 PRK14976 5'-3' exonuclease; Pr 70.2 6 0.00013 40.9 4.5 25 610-635 195-219 (281)
335 cd00056 ENDO3c endonuclease II 69.8 6.9 0.00015 36.4 4.6 62 628-690 31-93 (158)
336 TIGR03252 uncharacterized HhH- 69.7 12 0.00026 35.5 6.0 20 605-624 114-133 (177)
337 COG1200 RecG RecG-like helicas 69.4 25 0.00055 40.2 9.4 81 178-290 310-391 (677)
338 KOG1921|consensus 68.9 8.3 0.00018 38.0 4.8 32 598-629 151-182 (286)
339 KOG0386|consensus 68.6 12 0.00026 44.3 6.8 83 242-328 753-838 (1157)
340 PF14617 CMS1: U3-containing 9 68.3 4.6 0.0001 40.8 3.2 36 38-75 176-211 (252)
341 TIGR00084 ruvA Holliday juncti 67.6 14 0.0003 35.8 6.2 58 604-661 105-172 (191)
342 TIGR00614 recQ_fam ATP-depende 67.3 22 0.00048 39.7 8.8 61 178-274 50-110 (470)
343 smart00488 DEXDc2 DEAD-like he 66.9 3.1 6.8E-05 43.2 1.7 40 37-79 209-250 (289)
344 smart00489 DEXDc3 DEAD-like he 66.9 3.1 6.8E-05 43.2 1.7 40 37-79 209-250 (289)
345 PRK14603 ruvA Holliday junctio 66.7 23 0.00049 34.5 7.5 77 603-682 104-196 (197)
346 COG1197 Mfd Transcription-repa 66.6 16 0.00034 44.5 7.5 80 178-289 642-722 (1139)
347 TIGR00588 ogg 8-oxoguanine DNA 66.6 15 0.00032 38.5 6.7 64 626-691 162-231 (310)
348 PF12826 HHH_2: Helix-hairpin- 65.7 9.6 0.00021 29.6 3.8 23 603-625 32-54 (64)
349 PF04545 Sigma70_r4: Sigma-70, 65.0 12 0.00026 27.2 4.1 29 539-567 17-45 (50)
350 TIGR01389 recQ ATP-dependent D 64.9 26 0.00057 40.4 9.0 61 178-274 52-112 (591)
351 PRK14604 ruvA Holliday junctio 64.4 16 0.00035 35.4 6.0 77 603-682 105-192 (195)
352 KOG0343|consensus 64.2 9.1 0.0002 42.4 4.5 24 178-201 140-163 (758)
353 KOG0388|consensus 63.3 5.8 0.00013 45.0 2.9 90 7-110 634-734 (1185)
354 KOG0347|consensus 62.0 12 0.00026 41.4 5.0 60 178-273 260-321 (731)
355 PF13173 AAA_14: AAA domain 60.8 5.4 0.00012 35.7 1.9 40 65-110 61-100 (128)
356 smart00279 HhH2 Helix-hairpin- 60.8 6.8 0.00015 26.6 1.9 17 609-625 19-35 (36)
357 smart00342 HTH_ARAC helix_turn 60.7 49 0.0011 26.1 7.6 63 497-563 4-72 (84)
358 KOG2875|consensus 60.6 21 0.00047 36.0 6.0 87 565-689 131-227 (323)
359 PF02961 BAF: Barrier to autoi 60.5 9.1 0.0002 31.6 2.9 31 604-634 17-47 (89)
360 KOG0298|consensus 60.0 18 0.00039 44.1 6.3 108 6-122 433-567 (1394)
361 PF13463 HTH_27: Winged helix 59.8 22 0.00047 27.5 5.0 32 397-428 32-68 (68)
362 PF13518 HTH_28: Helix-turn-he 59.7 16 0.00034 26.5 4.0 29 536-564 6-34 (52)
363 PF14502 HTH_41: Helix-turn-he 58.6 10 0.00022 27.5 2.5 18 544-561 8-25 (48)
364 PF12833 HTH_18: Helix-turn-he 58.4 23 0.00049 28.5 5.1 56 500-555 1-58 (81)
365 PRK11192 ATP-dependent RNA hel 58.2 30 0.00064 38.2 7.6 76 179-290 73-154 (434)
366 PF07887 Calmodulin_bind: Calm 58.0 28 0.00061 35.9 6.6 61 602-663 161-225 (299)
367 PF05621 TniB: Bacterial TniB 58.0 7.1 0.00015 40.4 2.3 41 64-105 144-186 (302)
368 PF14520 HHH_5: Helix-hairpin- 57.8 8.5 0.00018 29.3 2.2 20 606-625 38-57 (60)
369 PRK10308 3-methyl-adenine DNA 57.2 16 0.00035 37.7 4.9 62 627-691 155-218 (283)
370 PRK11634 ATP-dependent RNA hel 56.4 36 0.00078 39.6 8.0 78 178-290 73-156 (629)
371 PF14947 HTH_45: Winged helix- 56.4 26 0.00057 28.2 5.0 36 396-433 32-67 (77)
372 PRK14602 ruvA Holliday junctio 56.1 28 0.0006 34.0 6.0 77 603-682 106-199 (203)
373 PRK10702 endonuclease III; Pro 56.0 20 0.00043 35.3 5.1 45 601-645 104-148 (211)
374 PRK12323 DNA polymerase III su 54.9 15 0.00032 42.3 4.4 43 61-107 120-162 (700)
375 TIGR00604 rad3 DNA repair heli 54.8 7 0.00015 46.2 2.0 40 36-79 192-234 (705)
376 PF02796 HTH_7: Helix-turn-hel 54.8 17 0.00036 25.9 3.2 26 538-563 17-42 (45)
377 PRK09401 reverse gyrase; Revie 54.7 25 0.00054 43.9 6.7 66 178-273 122-187 (1176)
378 KOG1434|consensus 54.0 6.7 0.00015 39.1 1.3 71 606-677 20-90 (335)
379 PRK10590 ATP-dependent RNA hel 53.7 40 0.00088 37.5 7.7 75 180-290 76-156 (456)
380 PF12836 HHH_3: Helix-hairpin- 53.4 6.2 0.00013 30.7 0.8 29 633-662 8-36 (65)
381 PRK13910 DNA glycosylase MutY; 53.3 18 0.00039 37.4 4.4 49 601-649 67-115 (289)
382 COG0122 AlkA 3-methyladenine D 53.2 49 0.0011 34.2 7.6 62 627-691 144-209 (285)
383 PF14579 HHH_6: Helix-hairpin- 52.7 27 0.00058 29.1 4.7 32 606-637 27-62 (90)
384 PRK07945 hypothetical protein; 52.6 24 0.00052 37.5 5.4 55 605-661 10-70 (335)
385 KOG1132|consensus 52.5 1.7E+02 0.0037 34.7 12.3 63 264-328 624-722 (945)
386 PF03333 PapB: Adhesin biosynt 52.3 38 0.00083 28.3 5.3 42 536-577 46-88 (91)
387 PRK04537 ATP-dependent RNA hel 52.3 42 0.00092 38.5 7.7 76 179-290 84-166 (572)
388 TIGR00593 pola DNA polymerase 52.3 22 0.00048 42.9 5.6 26 610-636 189-214 (887)
389 cd00268 DEADc DEAD-box helicas 52.1 46 0.001 32.0 7.1 76 179-290 69-150 (203)
390 PRK01229 N-glycosylase/DNA lya 52.0 40 0.00087 33.0 6.3 28 601-628 113-142 (208)
391 PRK07003 DNA polymerase III su 51.9 19 0.00042 42.1 4.8 39 64-106 118-156 (830)
392 PRK08084 DNA replication initi 51.6 46 0.00099 33.3 7.0 101 5-108 32-140 (235)
393 PF14716 HHH_8: Helix-hairpin- 51.5 75 0.0016 24.8 6.8 18 607-624 48-65 (68)
394 PRK00076 recR recombination pr 51.4 28 0.00062 33.6 5.1 30 607-643 12-41 (196)
395 COG2003 RadC DNA repair protei 50.9 41 0.00088 33.1 6.1 57 602-660 26-86 (224)
396 KOG1001|consensus 50.5 31 0.00068 40.1 6.2 92 8-117 207-302 (674)
397 COG0353 RecR Recombinational D 49.7 30 0.00065 33.2 4.9 44 605-663 11-54 (198)
398 PRK07764 DNA polymerase III su 49.7 22 0.00048 42.5 5.0 41 62-106 117-157 (824)
399 TIGR01407 dinG_rel DnaQ family 49.5 10 0.00022 45.9 2.2 39 38-79 415-454 (850)
400 TIGR00615 recR recombination p 49.4 34 0.00074 33.0 5.3 19 607-625 12-30 (195)
401 PF13086 AAA_11: AAA domain; P 49.4 9.9 0.00021 37.4 1.8 38 37-78 168-205 (236)
402 PRK13844 recombination protein 49.3 34 0.00074 33.1 5.3 18 608-625 17-34 (200)
403 TIGR00426 competence protein C 49.2 24 0.00052 27.7 3.6 32 594-625 35-66 (69)
404 PRK07246 bifunctional ATP-depe 49.0 12 0.00025 45.0 2.6 38 38-78 412-449 (820)
405 COG1555 ComEA DNA uptake prote 49.0 13 0.00028 34.4 2.3 36 627-663 85-120 (149)
406 PRK11776 ATP-dependent RNA hel 48.9 40 0.00086 37.5 6.7 77 179-290 72-154 (460)
407 PRK11057 ATP-dependent DNA hel 48.7 70 0.0015 37.1 8.9 61 178-274 64-124 (607)
408 PRK14961 DNA polymerase III su 48.6 37 0.0008 36.5 6.2 42 61-106 115-156 (363)
409 PRK00076 recR recombination pr 48.2 36 0.00079 32.9 5.3 40 643-685 14-53 (196)
410 PRK14906 DNA-directed RNA poly 47.8 28 0.00061 43.3 5.4 49 614-663 1321-1369(1460)
411 PRK07220 DNA topoisomerase I; 47.7 19 0.0004 42.7 4.0 50 608-658 688-737 (740)
412 PRK11747 dinG ATP-dependent DN 47.5 12 0.00026 44.1 2.3 39 38-79 218-260 (697)
413 PF13601 HTH_34: Winged helix 47.4 46 0.00099 27.1 5.1 40 397-436 28-73 (80)
414 TIGR01083 nth endonuclease III 47.4 33 0.00071 33.2 5.0 30 602-631 102-131 (191)
415 COG0258 Exo 5'-3' exonuclease 47.3 27 0.00058 36.7 4.7 80 542-665 168-248 (310)
416 PRK14964 DNA polymerase III su 47.2 36 0.00077 38.1 5.8 64 39-106 84-153 (491)
417 PRK10880 adenine DNA glycosyla 47.1 37 0.00081 36.2 5.8 45 601-645 104-148 (350)
418 PRK04837 ATP-dependent RNA hel 46.3 60 0.0013 35.6 7.6 76 179-290 83-164 (423)
419 COG5241 RAD10 Nucleotide excis 46.1 17 0.00036 34.2 2.5 54 607-662 168-221 (224)
420 COG5484 Uncharacterized conser 46.1 15 0.00032 36.5 2.3 35 534-568 11-45 (279)
421 COG1796 POL4 DNA polymerase IV 45.4 50 0.0011 34.3 6.0 67 607-679 54-126 (326)
422 TIGR00615 recR recombination p 45.0 26 0.00056 33.9 3.7 40 643-685 14-53 (195)
423 PRK14952 DNA polymerase III su 45.0 30 0.00065 39.7 5.0 42 61-106 114-155 (584)
424 PRK12900 secA preprotein trans 44.7 19 0.0004 43.3 3.3 75 1-77 191-270 (1025)
425 PRK01297 ATP-dependent RNA hel 44.6 67 0.0014 35.9 7.7 77 179-290 162-244 (475)
426 COG1194 MutY A/G-specific DNA 44.2 18 0.00038 38.0 2.7 39 627-665 63-102 (342)
427 TIGR00678 holB DNA polymerase 44.0 33 0.00071 32.8 4.5 49 53-105 84-132 (188)
428 KOG0331|consensus 44.0 86 0.0019 35.1 8.1 76 179-290 165-246 (519)
429 PRK06893 DNA replication initi 43.9 39 0.00084 33.7 5.1 88 19-110 40-135 (229)
430 PRK08074 bifunctional ATP-depe 43.5 16 0.00035 44.5 2.7 39 38-79 430-469 (928)
431 COG4277 Predicted DNA-binding 43.5 26 0.00056 35.8 3.6 47 612-660 304-350 (404)
432 PF02981 FokI_N: Restriction e 43.4 52 0.0011 29.8 5.1 35 401-435 110-144 (145)
433 PRK02515 psbU photosystem II c 43.3 17 0.00037 32.4 2.1 31 627-658 49-79 (132)
434 PRK13913 3-methyladenine DNA g 43.3 31 0.00067 34.1 4.1 44 606-650 121-164 (218)
435 PLN03137 ATP-dependent DNA hel 42.9 92 0.002 38.5 8.6 34 241-274 526-561 (1195)
436 TIGR01259 comE comEA protein. 42.6 21 0.00045 31.7 2.6 45 627-674 56-100 (120)
437 KOG2534|consensus 42.5 31 0.00068 35.5 4.0 51 606-656 56-113 (353)
438 PRK13844 recombination protein 42.2 30 0.00065 33.5 3.7 40 643-685 18-57 (200)
439 PF13401 AAA_22: AAA domain; P 42.2 24 0.00052 31.2 3.0 35 67-106 89-123 (131)
440 KOG0333|consensus 41.8 32 0.00069 38.1 4.2 58 5-70 529-590 (673)
441 KOG1133|consensus 41.8 6.3E+02 0.014 29.5 14.6 28 178-205 628-655 (821)
442 TIGR01084 mutY A/G-specific ad 41.0 57 0.0012 33.6 5.8 45 601-645 100-144 (275)
443 TIGR03879 near_KaiC_dom probab 40.7 61 0.0013 25.9 4.6 36 529-564 19-54 (73)
444 COG1199 DinG Rad3-related DNA 40.5 18 0.0004 42.3 2.5 40 38-80 193-235 (654)
445 PRK14958 DNA polymerase III su 40.2 41 0.0009 37.9 5.1 40 63-106 117-156 (509)
446 PRK03902 manganese transport t 40.2 1.3E+02 0.0028 27.3 7.6 37 397-434 36-72 (142)
447 COG2812 DnaX DNA polymerase II 39.9 28 0.00061 39.0 3.6 42 61-108 115-156 (515)
448 PRK06645 DNA polymerase III su 39.4 59 0.0013 36.6 6.1 32 59-94 122-153 (507)
449 PRK15483 type III restriction- 39.1 37 0.00081 41.0 4.6 52 265-320 501-552 (986)
450 PRK08727 hypothetical protein; 38.8 93 0.002 31.0 7.0 86 20-109 43-136 (233)
451 PF04218 CENP-B_N: CENP-B N-te 38.7 52 0.0011 24.4 3.8 30 539-568 19-48 (53)
452 PF02371 Transposase_20: Trans 38.7 26 0.00056 29.0 2.4 19 607-625 3-21 (87)
453 PHA03368 DNA packaging termina 38.5 36 0.00078 39.2 4.2 41 64-110 351-391 (738)
454 COG4742 Predicted transcriptio 38.5 90 0.0019 31.7 6.6 45 400-446 43-87 (260)
455 PRK03573 transcriptional regul 38.5 2.1E+02 0.0046 25.8 8.8 37 398-434 61-102 (144)
456 PF01367 5_3_exonuc: 5'-3' exo 38.4 1.9 4.2E-05 36.9 -4.5 25 610-635 22-46 (101)
457 smart00421 HTH_LUXR helix_turn 38.2 55 0.0012 23.7 4.1 28 539-566 15-42 (58)
458 PF07647 SAM_2: SAM domain (St 37.9 50 0.0011 25.3 3.9 48 613-663 17-65 (66)
459 TIGR03420 DnaA_homol_Hda DnaA 37.7 1.4E+02 0.003 29.2 8.1 73 5-79 25-104 (226)
460 PRK10219 DNA-binding transcrip 37.7 1E+02 0.0022 26.3 6.2 60 496-555 23-83 (107)
461 PRK05755 DNA polymerase I; Pro 37.4 42 0.00092 40.8 4.9 27 609-636 190-216 (880)
462 KOG4434|consensus 37.2 2.4E+02 0.0053 29.8 9.4 68 591-658 136-204 (520)
463 PF08281 Sigma70_r4_2: Sigma-7 37.1 49 0.0011 24.2 3.5 32 536-567 20-51 (54)
464 PRK14965 DNA polymerase III su 36.8 62 0.0013 37.2 5.9 43 60-106 114-156 (576)
465 PF01706 FliG_C: FliG C-termin 36.7 62 0.0013 28.1 4.6 53 633-685 49-101 (110)
466 PTZ00217 flap endonuclease-1; 36.6 28 0.00062 37.8 3.0 26 610-636 239-264 (393)
467 PF04919 DUF655: Protein of un 36.5 68 0.0015 30.4 5.0 31 605-635 115-149 (181)
468 PRK07994 DNA polymerase III su 36.3 42 0.00092 38.9 4.4 40 62-105 116-155 (647)
469 PRK00118 putative DNA-binding 36.3 1.9E+02 0.0041 25.0 7.3 36 539-574 30-65 (104)
470 PF13384 HTH_23: Homeodomain-l 36.3 37 0.0008 24.4 2.7 31 535-565 10-40 (50)
471 PRK14956 DNA polymerase III su 36.2 46 0.001 37.0 4.5 27 64-94 120-146 (484)
472 PRK10736 hypothetical protein; 36.2 79 0.0017 34.0 6.1 46 606-657 8-53 (374)
473 PRK05642 DNA replication initi 36.0 57 0.0012 32.6 4.9 87 19-110 46-140 (234)
474 PHA00439 exonuclease 35.9 1.1E+02 0.0024 31.6 6.9 67 610-680 192-266 (286)
475 cd00166 SAM Sterile alpha moti 35.8 1.1E+02 0.0024 22.7 5.5 44 616-662 17-61 (63)
476 PF00004 AAA: ATPase family as 35.6 80 0.0017 27.5 5.4 45 65-109 58-112 (132)
477 PTZ00110 helicase; Provisional 35.5 1E+02 0.0022 35.3 7.3 76 179-290 203-284 (545)
478 PRK03980 flap endonuclease-1; 35.5 34 0.00073 35.6 3.2 25 610-635 193-217 (292)
479 PRK14951 DNA polymerase III su 35.3 50 0.0011 38.2 4.8 42 61-106 120-161 (618)
480 PF01638 HxlR: HxlR-like helix 35.2 84 0.0018 26.0 5.0 38 396-433 32-74 (90)
481 KOG1001|consensus 35.0 10 0.00022 44.1 -0.9 81 242-326 566-648 (674)
482 PF09821 AAA_assoc_C: C-termin 34.7 47 0.001 29.5 3.5 41 402-446 16-56 (120)
483 PF03551 PadR: Transcriptional 34.5 1.6E+02 0.0035 23.2 6.5 36 397-432 31-73 (75)
484 PF00308 Bac_DnaA: Bacterial d 34.2 69 0.0015 31.7 5.1 90 20-111 36-142 (219)
485 PRK14969 DNA polymerase III su 34.1 56 0.0012 37.1 4.9 43 60-106 114-156 (527)
486 TIGR02881 spore_V_K stage V sp 34.1 56 0.0012 33.2 4.6 40 67-106 107-150 (261)
487 cd06170 LuxR_C_like C-terminal 33.8 73 0.0016 23.1 4.1 26 539-564 12-37 (57)
488 PRK08451 DNA polymerase III su 33.6 66 0.0014 36.4 5.3 42 61-106 113-154 (535)
489 smart00346 HTH_ICLR helix_turn 33.6 2.4E+02 0.0052 22.9 7.7 34 397-430 34-67 (91)
490 PRK12547 RNA polymerase sigma 33.4 99 0.0022 28.7 5.9 40 531-571 118-157 (164)
491 PF06969 HemN_C: HemN C-termin 33.1 62 0.0013 24.9 3.7 29 399-429 37-65 (66)
492 PRK15215 fimbriae biosynthesis 32.9 1.5E+02 0.0032 25.3 5.8 29 534-562 52-81 (100)
493 PRK08691 DNA polymerase III su 32.9 54 0.0012 38.2 4.5 30 546-575 581-610 (709)
494 PF13443 HTH_26: Cro/C1-type H 32.7 35 0.00077 25.9 2.2 41 542-582 10-52 (63)
495 smart00347 HTH_MARR helix_turn 32.6 1.9E+02 0.0042 23.7 7.0 37 398-434 39-80 (101)
496 PF06068 TIP49: TIP49 C-termin 32.3 64 0.0014 34.5 4.6 27 52-78 264-291 (398)
497 PRK09416 lstR lineage-specific 32.3 3.5E+02 0.0075 24.6 8.6 87 352-448 42-132 (135)
498 COG3432 Predicted transcriptio 32.0 77 0.0017 26.8 4.1 37 397-433 45-83 (95)
499 PRK15340 transcriptional regul 31.9 1.3E+02 0.0028 29.7 6.5 59 497-555 128-187 (216)
500 smart00478 ENDO3c endonuclease 31.8 60 0.0013 29.7 4.0 28 602-629 68-95 (149)
No 1
>KOG0950|consensus
Probab=100.00 E-value=8.9e-87 Score=728.89 Aligned_cols=644 Identities=33% Similarity=0.510 Sum_probs=544.0
Q ss_pred hhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCC
Q psy15878 2 VHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQ 81 (693)
Q Consensus 2 ~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~ 81 (693)
++|+...+..++..+|++|.+|+|..+ +.... +.-++.|||.||.+.++++++..+.+..+++|||||.|+++|.+
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~---p~~~~-k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~ 357 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFP---PEKRR-KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKG 357 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCC---CCCcc-cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccc
Confidence 789999999999999999999997644 33332 66799999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhccCCC--ceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhccc
Q psy15878 82 RGPILECVVSKVLYLKKS--IQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADN 159 (693)
Q Consensus 82 rg~~le~il~~l~~~~~~--~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (693)
||.++|.+++++.+.+.. .|+||||||++|...++.||++.+|...+|||++.++++++..+|.... ....+.+.
T Consensus 358 rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r---~~~lr~ia 434 (1008)
T KOG0950|consen 358 RGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSR---NKVLREIA 434 (1008)
T ss_pred cchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchh---hHHHHHhh
Confidence 999999999999877554 5699999999999999999999999999999999999999888887632 12222222
Q ss_pred ccccC--CCCChhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccc----hh--hHHHHHHHHHhccC
Q psy15878 160 LDYSL--TGSGPDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYK----KQ--EKEDLIEALKEEND 227 (693)
Q Consensus 160 ~~~~~--~~~~~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~----~~--~~~~~~~~l~~~~~ 227 (693)
..+.. ...++|.++.++. ++.++|||||+|+.|+.+|..+.. .+ |.... .. +.....+.++ ..+
T Consensus 435 ~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~--~v-pk~~~~e~~~~~~~~~s~s~~lr-~~~ 510 (1008)
T KOG0950|consen 435 NLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAK--KV-PKHIKSEKRLGLWELLSISNLLR-RIP 510 (1008)
T ss_pred hhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHH--Hh-hHhhhhhhhhhHHHHHHHHhHhh-cCC
Confidence 11222 3345577777776 777899999999999999988877 44 32221 11 2222233333 344
Q ss_pred CccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHh
Q psy15878 228 GKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMV 307 (693)
Q Consensus 228 ~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~ 307 (693)
+.+++.|+.+++.|++|||+|++.++|+.|+.+|++|.+.|++||+|+++|||+|+.+|||..++.|+++.+..+|+||+
T Consensus 511 ~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~ 590 (1008)
T KOG0950|consen 511 GILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMV 590 (1008)
T ss_pred cccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCc---hhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhh
Q psy15878 308 GRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDP---PTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384 (693)
Q Consensus 308 GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~---~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~ 384 (693)
|||||.|.|..|.+++++.+. +...+.+++..+.+++.|++.+ ..+...++.+|+.+.+.+.+|+..|..+|+++.
T Consensus 591 GRAGR~gidT~GdsiLI~k~~-e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di~~~va~tl~s~ 669 (1008)
T KOG0950|consen 591 GRAGRTGIDTLGDSILIIKSS-EKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDILHFVAVTLLSA 669 (1008)
T ss_pred hhhhhcccccCcceEEEeecc-chhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHHHHHHHHhhhhc
Confidence 999999999999999999999 8888889999999999999973 233468999999999999999999999999998
Q ss_pred ccCchhhhhh---hhhhHH-HHHH-HHHhhcCCeEee-ccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhhhcccccc
Q psy15878 385 LKSPEDQQTF---LETTLS-EIVA-SLLASKGTMLTM-NEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLL 458 (693)
Q Consensus 385 ~~~p~~~~~~---~~~~~~-~~~l-~~L~~~g~i~~~-~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~~~~~~l~ 458 (693)
...|.+.... ....+. .... ..+....++... .+....-+|++|++....+++|..+..++.+|+++.+.+++.
T Consensus 670 q~~~~~~~~~le~~s~ql~~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~~~~a~~l~~~L~~~~~~~vle 749 (1008)
T KOG0950|consen 670 QEKPENVREQLEMESDQLVINDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSDPEVANILFADLKKSLPQLVLE 749 (1008)
T ss_pred ccchhhhhhcccchhhhhccchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCChhhhHHHHHHHHHhhhccccc
Confidence 5444443221 011110 0111 234444455421 111122399999999999999999999999999999999999
Q ss_pred ccccEEEeeccCCccCCCCCccccccchhhHhhh---cChhHHHHHHHcCccHHHHHHHhcC-Cchh-hHHHHHHHHHHH
Q psy15878 459 NSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTK---FHPQTLRVAEALGVTENLVALNVTG-KLKD-EKKALLCRFFHA 533 (693)
Q Consensus 459 ~~l~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~gi~~~~~~~~~~~-~~~~-~~~~~~~~~~~a 533 (693)
+.+|+||++||+. .. ...++|..||.. |++.++++++.+|+.+.|+.+..+| ...+ .+++++.|||.+
T Consensus 750 ~~lh~lylvtP~~-----~~--~~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~fi~~~~~gqs~~~~~~~~~~~r~y~~ 822 (1008)
T KOG0950|consen 750 SSLHLLYLVTPYL-----EV--MNDIDWLIYFQIYHTLPSPEQKLAKLLGVIESFIEKCVSGQSVRNLQNVQKRKRLYVA 822 (1008)
T ss_pred cccceeeeecchH-----hh--cccccHHHHHHHHhcCCcHHHHHHhhhchHHHHHHHhhhccccccccchhHHHHHHHH
Confidence 9999999999994 11 226899877544 9999999999999999999999999 3322 456788999999
Q ss_pred HHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhhhcCCC
Q psy15878 534 CILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPG 613 (693)
Q Consensus 534 ~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~g 613 (693)
++|+++|+|.|+.+|+++|++.||++|+++++++.+|++|+.||++++|+ .+..++..+..||.+|+.+||.+||++|+
T Consensus 823 l~L~~li~espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~-~~~~l~~~~~~rl~~g~~~eL~~Lmrv~~ 901 (1008)
T KOG0950|consen 823 LALQKLINESPIRTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWF-PLRALLSEFYGRLSFGGHAELIPLMRVPD 901 (1008)
T ss_pred HHHHHHHhhCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhc-chHHHHHHHHHHHhccchhhhhhhhcCch
Confidence 99999999999999999999999999999999999999999999999943 79999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhc-CCCHHHHHHHHHHHHhhhh
Q psy15878 614 VKIGRARQLLNAGYSSLELIARADAKEMVAKIR-HLPLRSARNLISAAKLHFI 665 (693)
Q Consensus 614 i~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~-~~~~~~a~~i~~~a~~~~~ 665 (693)
+...|||+||.|||+|+.+|++|+|.++++.++ .+..++|..|+.+++..+.
T Consensus 902 ~~~~RAr~lf~Agf~tv~~iA~a~p~klvkel~~si~~~~a~~i~~s~~~~l~ 954 (1008)
T KOG0950|consen 902 VKAERARQLFKAGFTSVGSIANATPEKLVKELPISISMKQATQIVASAKDELR 954 (1008)
T ss_pred hHHHHHHHHHHhhccchHHHhcCChHHHHHHhhccccHHHhhhHHhhhhHHHH
Confidence 999999999999999999999999999999998 6999999999999965554
No 2
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-82 Score=738.57 Aligned_cols=614 Identities=26% Similarity=0.369 Sum_probs=488.8
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|+++.|++++ ..|++|..++|+.... ..++..++|+|||||+++.++++ ...+++++++||+||+|++++.
T Consensus 79 La~q~~~~~~~~~-~~g~~v~~~tGd~~~~---~~~l~~~~IiV~Tpek~~~llr~--~~~~l~~v~lvViDE~H~l~d~ 152 (737)
T PRK02362 79 LASEKFEEFERFE-ELGVRVGISTGDYDSR---DEWLGDNDIIVATSEKVDSLLRN--GAPWLDDITCVVVDEVHLIDSA 152 (737)
T ss_pred HHHHHHHHHHHhh-cCCCEEEEEeCCcCcc---ccccCCCCEEEECHHHHHHHHhc--ChhhhhhcCEEEEECccccCCC
Confidence 6899999999875 4689999999976432 23447799999999999998886 3467899999999999999998
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNL 160 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (693)
.||+.++.++.++++..++.|+|+||||++|++++++|+++..+..++||+++..++............. .+..
T Consensus 153 ~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~------~~~~ 226 (737)
T PRK02362 153 NRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQR------EVEV 226 (737)
T ss_pred cchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccc------cCCC
Confidence 9999999999999988888999999999999999999999999999999999987765433322211000 0000
Q ss_pred cccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccc---hhhHHHHHHHHHhccCCccchHHHHH
Q psy15878 161 DYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYK---KQEKEDLIEALKEENDGKLSTNLEEC 237 (693)
Q Consensus 161 ~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~L~~~ 237 (693)
.........+.+.+..++++||||+|++.|+.+|..|... . ...+. .....++.+.+....+...+..|..+
T Consensus 227 --~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~ 301 (737)
T PRK02362 227 --PSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASA--L-KKTLTAAERAELAELAEEIREVSDTETSKDLADC 301 (737)
T ss_pred --ccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHH--h-hhcCCHHHHHHHHHHHHHHHhccCccccHHHHHH
Confidence 0011122334444458899999999999999999999872 2 11111 12233445555555555567899999
Q ss_pred HhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecC--cC---CCccCCHHHHHHHhhccCC
Q psy15878 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YV---GRDFISLNMYKQMVGRAGR 312 (693)
Q Consensus 238 ~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~--~~---g~~~~s~~~~~Qr~GRaGR 312 (693)
+..||++|||||++++|+.++++|++|.++|||||+++++|||+|+++|||++. |+ |..|++..+|.||+|||||
T Consensus 302 l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR 381 (737)
T PRK02362 302 VAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGR 381 (737)
T ss_pred HHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999999999999999842 22 4568999999999999999
Q ss_pred CCCCCCCcEEEEeccccc-HHHHHHHHhCCCCcccccCC-chhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchh
Q psy15878 313 TGLQESGESIMLCKTMQD-FLRFSSMMNAGPEPISSHMD-PPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPED 390 (693)
Q Consensus 313 ~g~d~~G~~i~l~~~~~~-~~~~~~~l~~~~~~i~s~l~-~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~ 390 (693)
+|+|..|.|++++.+..+ .+.+.+++..+++|++|++. +..+.++++++|+.|.+.+.+++.+|+++||+++
T Consensus 382 ~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~------ 455 (737)
T PRK02362 382 PGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYAT------ 455 (737)
T ss_pred CCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHh------
Confidence 999999999999977522 33467888888889999996 5689999999999999999999999999999998
Q ss_pred hhh--hhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhhhccccccccccEEEeec
Q psy15878 391 QQT--FLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVI 468 (693)
Q Consensus 391 ~~~--~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~~~~~~l~~~l~ll~l~~ 468 (693)
+.. ....+.++.+++.|.+.|+|+.++ +.+.+|++|++++++|++|.++..|.+.|+...+ ....+.||+++. +
T Consensus 456 ~~~~~~~l~~~v~~~l~~L~~~~~i~~~~--~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~-~~~~~~l~~i~~-~ 531 (737)
T PRK02362 456 QTDDTGRLERVVDDVLDFLERNGMIEEDG--ETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKK-PTDLGLLHLVCS-T 531 (737)
T ss_pred hccchHHHHHHHHHHHHHHHHCCCeeecC--CeEeEChHHHHHHHhcCCHHHHHHHHHHhhhccc-CchHHHHHHhhc-C
Confidence 322 245667899999999999999753 4599999999999999999999999999987642 224455666665 3
Q ss_pred cCCccCCCCCccccccchhhHhhhcC-hhHHHHHHHcCccHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHhcCCCHH
Q psy15878 469 PLEYRIPSDGILLSRSKVYDRYTKFH-PQTLRVAEALGVTENLVALNVTGKLKD-EKKALLCRFFHACILYDVLNFDNHQ 546 (693)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~gi~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~l~~~i~e~~~~ 546 (693)
|.+..+ ..+.........+. .....+...++. +.++ ....++.++|+|++|++|++|+|+.
T Consensus 532 ~e~~~~------~~r~~e~~~l~~~~~~~~~~~~~~~p~-----------~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~ 594 (737)
T PRK02362 532 PDMYEL------YLRSGDYEWLNEYLYEHEDELLGDVPS-----------EFEDDEFEDFLSAVKTALLLEDWIDEVDEE 594 (737)
T ss_pred cccccc------ccChhHHHHHHHHHHhcccchhccCCc-----------hhhhhhHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 443222 11222111111100 000000001111 1111 1223568999999999999999999
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcC
Q psy15878 547 KVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAG 626 (693)
Q Consensus 547 ~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g 626 (693)
+|+++||+.+|++|++++++.|+++++++||+.++ |.+...+..|++||.+|+|+|+++|++|||+|+++||+||++|
T Consensus 595 ~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~~~--~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~g 672 (737)
T PRK02362 595 RITERYGVGPGDIRGKVETAEWLLHAAERLASELD--LDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAG 672 (737)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999876 5778899999999999999999999999999999999999999
Q ss_pred CCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 627 YSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
|+|++||+.++++++.++ +|+|+|++|++++++.
T Consensus 673 i~s~~dl~~~~~~~l~~~---~g~~~~~~i~~~~~~~ 706 (737)
T PRK02362 673 IESRADLRAADKSVVLAI---LGEKIAENILEQAGRR 706 (737)
T ss_pred CCCHHHHHhCCHHHHHHH---HCHHHHHHHHHHhCcc
Confidence 999999999999999996 9999999999999855
No 3
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-78 Score=704.72 Aligned_cols=611 Identities=22% Similarity=0.276 Sum_probs=478.9
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|+++.|+.+. .+|++|..++|+.... ..+.++++|+|+|||+++.+++. ...+++++++||+||+|++++.
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~---~~~~~~~~IiV~Tpe~~~~ll~~--~~~~l~~l~lvViDE~H~l~~~ 153 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDST---DEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKLVVADEIHLIGSY 153 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCc---hhhhccCCEEEEcHHHHHHHHhC--CchhhhcCCEEEEcCcCccCCc
Confidence 6889999998864 5799999999986532 33447899999999999888875 4467899999999999999998
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNL 160 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (693)
.||+.++.+++++ ..++|+|+||||++|++++++|+++..+..++||+++...+......+.... .....
T Consensus 154 ~rg~~le~il~~l---~~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~-~~~~~------ 223 (720)
T PRK00254 154 DRGATLEMILTHM---LGRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDG-KIERF------ 223 (720)
T ss_pred cchHHHHHHHHhc---CcCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCc-chhcc------
Confidence 9999999999886 3678999999999999999999999999999999998765543322221110 00000
Q ss_pred cccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchh---hHHHHHHHHHhccCCccchHHHHH
Q psy15878 161 DYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQ---EKEDLIEALKEENDGKLSTNLEEC 237 (693)
Q Consensus 161 ~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~L~~~ 237 (693)
.......+.+.+..++++||||+||+.|+.+|..|... . ...+... +..++.+.+.. ...+..|.++
T Consensus 224 ----~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~--~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~~~ 293 (720)
T PRK00254 224 ----PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKK--I-KRFLTKPELRALKELADSLEE---NPTNEKLKKA 293 (720)
T ss_pred ----hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHH--H-HHhcCchhHHHHHHHHHHHhc---CCCcHHHHHH
Confidence 00011233444557899999999999999999988752 1 0001111 12222333322 1235688999
Q ss_pred HhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCc----CCCccCCHHHHHHHhhccCCC
Q psy15878 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY----VGRDFISLNMYKQMVGRAGRT 313 (693)
Q Consensus 238 ~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~----~g~~~~s~~~~~Qr~GRaGR~ 313 (693)
+..||++|||||++++|..+++.|++|.++|||||+++++|||+|+++|||.... .|..+++..+|+||+|||||+
T Consensus 294 l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~ 373 (720)
T PRK00254 294 LRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRP 373 (720)
T ss_pred HhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCC
Confidence 9999999999999999999999999999999999999999999999999997431 233567899999999999999
Q ss_pred CCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCC-chhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhh
Q psy15878 314 GLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMD-PPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQ 392 (693)
Q Consensus 314 g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~-~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~ 392 (693)
|+|..|.+++++++....+.+++++.+.++++.|.+. +..+.++++++|+.+.+.+.+++.+|+++||+|+ +||+++.
T Consensus 374 ~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~-~~~~~~~ 452 (720)
T PRK00254 374 KYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH-QRKDLYS 452 (720)
T ss_pred CcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH-hhcChHh
Confidence 9999999999998762255678899999889999987 6789999999999999999999999999999997 4454432
Q ss_pred hhhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhhhccccccccccEEEeeccCCc
Q psy15878 393 TFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEY 472 (693)
Q Consensus 393 ~~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~~~~~~l~~~l~ll~l~~~~~~ 472 (693)
..+.++.+++.|.+.++|+.++ ++.+.+|++|++++.+|++|.++..|.+.|+...+...+.+.||+++.+.++.
T Consensus 453 ---~~~~v~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~- 527 (720)
T PRK00254 453 ---LEEKAKEIVYFLLENEFIDIDL-EDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMT- 527 (720)
T ss_pred ---HHHHHHHHHHHHHHCCCeEEcC-CCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCcccc-
Confidence 3456788899999999999753 34699999999999999999999999999987543344567788887754442
Q ss_pred cCCCCCccccccchhhHhhh-cChhHHHHHHHcCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy15878 473 RIPSDGILLSRSKVYDRYTK-FHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKM 551 (693)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i~e~~~~~i~~~ 551 (693)
.+ ..+.+....+.. ......++...++... ......++.++|+|++|++|++++|+..|.++
T Consensus 528 ~~------~~r~~e~~~l~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~ 590 (720)
T PRK00254 528 PL------NYSRKEMEDLLDEAYEMEDRLYFNIPYWE-----------DYKFQKFLRAFKTAKVLLDWINEVPEGEIVET 590 (720)
T ss_pred cc------CcchhhHHHHHHHHHhhcccccccCCcch-----------hhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 22 122221111111 0000001111112111 01223467899999999999999999999999
Q ss_pred hCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcCCCCHH
Q psy15878 552 YGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLE 631 (693)
Q Consensus 552 y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~ 631 (693)
|++++||++++++++.|+++++++||+.+++.-.+...+..+++||.||++.|+++|.+|||+|+++|++|+++||.|++
T Consensus 591 ~~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g~~s~~ 670 (720)
T PRK00254 591 YNIDPGDLYRILELADWLMYSLIELYKLFEPKQEVLDYLETLHLRVKHGVREELLELMRLPMIGRKRARALYNAGFRSIE 670 (720)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHccCCCHH
Confidence 99999999999999999999999999988831123467779999999999999999999999999999999999999999
Q ss_pred HHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 632 LIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 632 ~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
+|+.|++++|.+ ++|+|++.|++|.+.++
T Consensus 671 ~i~~a~~~el~~-~~gi~~~~a~~i~~~~~ 699 (720)
T PRK00254 671 DIVNAKPSELLK-VEGIGAKIVEGIFKHLG 699 (720)
T ss_pred HHHhCCHHHHhc-CCCCCHHHHHHHHHHhc
Confidence 999999999988 67999999999999876
No 4
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.6e-78 Score=697.99 Aligned_cols=588 Identities=25% Similarity=0.309 Sum_probs=473.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|++++|+++. .+|.+|..++|+..... ...+.++|+|+|||+++.+++++ ..+++++++||+||+|++++.
T Consensus 77 La~q~~~~~~~l~-~~g~~v~~~~G~~~~~~---~~~~~~dIiv~Tpek~~~l~~~~--~~~l~~v~lvViDEaH~l~d~ 150 (674)
T PRK01172 77 LAMEKYEELSRLR-SLGMRVKISIGDYDDPP---DFIKRYDVVILTSEKADSLIHHD--PYIINDVGLIVADEIHIIGDE 150 (674)
T ss_pred HHHHHHHHHHHHh-hcCCeEEEEeCCCCCCh---hhhccCCEEEECHHHHHHHHhCC--hhHHhhcCEEEEecchhccCC
Confidence 6899999999864 57899999988765322 22367899999999999888763 356899999999999999998
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNL 160 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (693)
.||+.++.++.++++.+++.|+|+||||++|++++++|+++..+...+||+|+...+......+.... .. .
T Consensus 151 ~rg~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~-~~-----~--- 221 (674)
T PRK01172 151 DRGPTLETVLSSARYVNPDARILALSATVSNANELAQWLNASLIKSNFRPVPLKLGILYRKRLILDGY-ER-----S--- 221 (674)
T ss_pred CccHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCccCCCCCCCCeEEEEEecCeeeeccc-cc-----c---
Confidence 99999999999998888889999999999999999999999999999999999866543332221100 00 0
Q ss_pred cccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCC-cccchhhHHHHHHHHHhccCCccchHHHHHHh
Q psy15878 161 DYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGT-KEYKKQEKEDLIEALKEENDGKLSTNLEECIL 239 (693)
Q Consensus 161 ~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~ 239 (693)
.......+.+.+..++++||||+|++.|+.++..|.+ ..+. ..+. +........+..|.++++
T Consensus 222 ----~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~--~~~~~~~~~----------~~~~~~~~~~~~L~~~l~ 285 (674)
T PRK01172 222 ----QVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQ--HFPEFNDFK----------VSSENNNVYDDSLNEMLP 285 (674)
T ss_pred ----cccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHH--hhhhccccc----------ccccccccccHHHHHHHh
Confidence 0001122333344789999999999999999999987 2200 0000 000011224567889999
Q ss_pred hceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecC----cCCCccCCHHHHHHHhhccCCCCC
Q psy15878 240 YGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS----YVGRDFISLNMYKQMVGRAGRTGL 315 (693)
Q Consensus 240 ~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~----~~g~~~~s~~~~~Qr~GRaGR~g~ 315 (693)
.||++|||||++++|..+++.|++|.++|||||+++++|||+|+.+|||... ..+..|+|..+|.||+|||||+|+
T Consensus 286 ~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~ 365 (674)
T PRK01172 286 HGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGY 365 (674)
T ss_pred cCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999752 224468999999999999999999
Q ss_pred CCCCcEEEEecccccHHHHHHHHhCCCCcccccCC-chhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhhh
Q psy15878 316 QESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMD-PPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTF 394 (693)
Q Consensus 316 d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~-~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~~ 394 (693)
|..|.+++++.+..+.+.+.+++...++|++|.|. ...+...++++|+.|.+.+.+|+.+|+++||+|+..++ .
T Consensus 366 d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~-----~ 440 (674)
T PRK01172 366 DQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGV-----D 440 (674)
T ss_pred CCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCch-----H
Confidence 99999999987763467788999888889999996 34667778899999999999999999999999982111 2
Q ss_pred hhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhhhccccccccccEEEeeccCCccC
Q psy15878 395 LETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRI 474 (693)
Q Consensus 395 ~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~~~~~~l~~~l~ll~l~~~~~~~~ 474 (693)
...+.++.+++.|.++|+|+.+ +.+.+|++|++++++|++|+++..|.++++.... ....|++++.+ |.+.++
T Consensus 441 ~l~~~v~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~---~~~~l~~~~~~-~e~~~~ 513 (674)
T PRK01172 441 EIDYYIESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHDYD---EDLALYYISLC-REIIPA 513 (674)
T ss_pred HHHHHHHHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCC---HHHHHHHhhcC-cccccc
Confidence 3456788999999999999843 3499999999999999999999999999977542 34456666553 433111
Q ss_pred CCCCccccccchhhHhhhcChhHHHHHHHcCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCC
Q psy15878 475 PSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGI 554 (693)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i~e~~~~~i~~~y~v 554 (693)
+...... ..++++.+|..+ ....++|++++|++|++|+++..|+++|++
T Consensus 514 --------~~~~~~~-------~~~~~~~~~~~~----------------~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~ 562 (674)
T PRK01172 514 --------NTRDDYY-------AMEFLEDIGVID----------------GDISAAKTAMVLRGWISEASMQKITDTYGI 562 (674)
T ss_pred --------ccchHHH-------HHHHHHHhcccc----------------chhHHHHHHHHHHHHHcCCCHHHHHHHhCC
Confidence 1111000 111222333211 224579999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHH
Q psy15878 555 QNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIA 634 (693)
Q Consensus 555 ~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~ 634 (693)
.+|++|+++++++|+++++.++|+.+++ .+...+..++.||.||+++|+++|++|||+|+.+||+||++||+|+.||+
T Consensus 563 ~~g~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l~~~g~~~~~di~ 640 (674)
T PRK01172 563 APGDVQARASSADWISYSLARLSSIYKP--EMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAGFKTVDDIA 640 (674)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999999987653 67899999999999999999999999999999999999999999999999
Q ss_pred hcChHHHHHHhcCCCHHHHHHHHHHHHhhhh
Q psy15878 635 RADAKEMVAKIRHLPLRSARNLISAAKLHFI 665 (693)
Q Consensus 635 ~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~ 665 (693)
.++++++.+++ |+|+++|++|+++|++++.
T Consensus 641 ~~~~~~~~~i~-~~~~~~~~~i~~~~~~~~~ 670 (674)
T PRK01172 641 RSSPERIKKIY-GFSDTLANAIVNRAMKISS 670 (674)
T ss_pred hCCHHHHHHHh-ccCHHHHHHHHHHHHHHHH
Confidence 99999998865 9999999999999998764
No 5
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.6e-71 Score=631.63 Aligned_cols=624 Identities=24% Similarity=0.315 Sum_probs=466.0
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||+|++++|++ ...+|++|..++|+.. ....++.+++|+|+|||||++++++. ..|+.++++||+||+|+++|.
T Consensus 88 La~Ek~~~~~~-~~~~GirV~~~TgD~~---~~~~~l~~~~ViVtT~EK~Dsl~R~~--~~~~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 88 LAEEKYEEFSR-LEELGIRVGISTGDYD---LDDERLARYDVIVTTPEKLDSLTRKR--PSWIEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred HHHHHHHHhhh-HHhcCCEEEEecCCcc---cchhhhccCCEEEEchHHhhHhhhcC--cchhhcccEEEEeeeeecCCc
Confidence 78999999994 4569999999998754 33445689999999999999999984 458999999999999999998
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNL 160 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (693)
.||+.+|.++++++.....+||+++|||+||.+++++|++++.+.+.|||+++...+...+.++....... .....
T Consensus 162 ~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~--- 237 (766)
T COG1204 162 TRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLL--- 237 (766)
T ss_pred ccCceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-ccccc---
Confidence 89999999999999888889999999999999999999999999999999999887766666655432221 00000
Q ss_pred cccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhc--cCCCCcccchhhHHHHHHHHH-hccCCccchHHHHH
Q psy15878 161 DYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFD--RFPGTKEYKKQEKEDLIEALK-EENDGKLSTNLEEC 237 (693)
Q Consensus 161 ~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~--~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~L~~~ 237 (693)
......+.+...++.++++||||+||+.+...|+.+... ....+... .........+. .+.....++.|.++
T Consensus 238 ---~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~l~e~ 312 (766)
T COG1204 238 ---IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEK--IVLDEGASPILIPETPTSEDEELAEL 312 (766)
T ss_pred ---chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhh--hhccccccccccccccccchHHHHHH
Confidence 011112233333449999999999999999999999851 11111110 00000111111 12223346899999
Q ss_pred HhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecC-----cCCCccCCHHHHHHHhhccCC
Q psy15878 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS-----YVGRDFISLNMYKQMVGRAGR 312 (693)
Q Consensus 238 ~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~-----~~g~~~~s~~~~~Qr~GRaGR 312 (693)
++.|+++||+||+.++|..+|+.|+.|.++|||||+||++|||+|+.+|||.+. ..|..++++.+++||+|||||
T Consensus 313 v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGR 392 (766)
T COG1204 313 VLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGR 392 (766)
T ss_pred HHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCC
Confidence 999999999999999999999999999999999999999999999999999852 345678999999999999999
Q ss_pred CCCCCCCcEEEEecccccHHH-HHHHHhCCCCcccccCC-chhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchh
Q psy15878 313 TGLQESGESIMLCKTMQDFLR-FSSMMNAGPEPISSHMD-PPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPED 390 (693)
Q Consensus 313 ~g~d~~G~~i~l~~~~~~~~~-~~~~l~~~~~~i~s~l~-~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~ 390 (693)
+|+|..|.++++++...+.+. ...+....++|+.|.|. +.++..+++..++.+...+..+...|+..||+ +|..
T Consensus 393 Pg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~----~~~~ 468 (766)
T COG1204 393 PGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFY----NPQT 468 (766)
T ss_pred CCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHh----hhhh
Confidence 999999999999965523333 36678888888888886 33466666655555554444444444444444 4444
Q ss_pred hhhhhhhhHHHHHHHHHhhcC-CeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhhhccccccccccEEEeecc
Q psy15878 391 QQTFLETTLSEIVASLLASKG-TMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIP 469 (693)
Q Consensus 391 ~~~~~~~~~~~~~l~~L~~~g-~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~~~~~~l~~~l~ll~l~~~ 469 (693)
|.....+..+..+++.|.+.+ +++.. ...+.+|++|+.++++|++|++++.+.+.+............+|++.+ +|
T Consensus 469 ~~~~~~~~~i~~~~~~L~~~~~~~~~~--~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~-~p 545 (766)
T COG1204 469 YGEGMLREEILASLRYLEENGLILDAD--WEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISL-TP 545 (766)
T ss_pred ccccchHHHHHHHHHHHHhccceeecc--ccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhc-Cc
Confidence 333345566788899999987 55443 345999999999999999999999999988876532123444555555 55
Q ss_pred CCccCCCCCccccccchh-hHhhhcChhHHHHHHHcCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcCCCHHHH
Q psy15878 470 LEYRIPSDGILLSRSKVY-DRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKV 548 (693)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i~e~~~~~i 548 (693)
++..+ ....++. ..... ...+..+ ++.....+.........+.+++++.++.+|+++.+...|
T Consensus 546 d~~~~------~~~~~~~~~~~~~------~~~~~~~----~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i 609 (766)
T COG1204 546 DLMPI------KLRERESSELVLD------ELEEQSD----YLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEI 609 (766)
T ss_pred cchhh------hhhhhhhhhhhHH------HHHhcch----HHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 54221 1111111 00000 0000000 000000000000111357899999999999999999999
Q ss_pred HHHhCCCchhHHHHHHHHHHH-------HHHHHHHhhhCcchhhhH-HHhhhHHHHhhccCc-cchhhhhcCCCCCHHHH
Q psy15878 549 AKMYGIQNSHLQNFLNVTSYF-------ASKVYRFCEELPELWCYK-QLLTDLPQTLMYCRA-PNLRALMDLPGVKIGRA 619 (693)
Q Consensus 549 ~~~y~v~~g~~~~l~~~~~~~-------a~~~~~~~~~~~~~~~~~-~~l~~~~~rl~~g~~-~el~~l~~i~gi~~~~a 619 (693)
+.+|++.+|+++.+.+++.|+ ..++.+.+..++. .... ..+..+..|+++|++ +++.+|+.++++|+.+|
T Consensus 610 ~~~~~~~~~dl~~~~~~a~w~~~~~~~l~~~~~r~~~~~~~-~~~~~~~~~~~~~rie~gv~~e~~~~l~~i~~~grvra 688 (766)
T COG1204 610 LNAYGVAPGDLLRIAETAEWLSADLLALGKAAERLAKILGL-GLHVLRKLEILSLRIEYGVRSEELLELVEIRGVGRVRA 688 (766)
T ss_pred HHHhCcchhhHHhhcchhhhhhhhhhhhhhhhhhhHhhhCC-CccccccchhhhhhhhcCCChhhhcccccccccchhHH
Confidence 999999999999999999999 8888888887774 1111 788899999999999 99999999999999999
Q ss_pred HHHHHcCCCCHHHHH-hcChHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 620 RQLLNAGYSSLELIA-RADAKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 620 ~~L~~~g~~s~~~l~-~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
|+||++||.+.+++. .+.+.++.. +.++|.+.+..|.+...+..
T Consensus 689 r~ly~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~ 733 (766)
T COG1204 689 RKLYNAGYKSLEDLRLIADPAELLP-LTGIGERLVEAILESLGRDV 733 (766)
T ss_pred HHHHHhhhccHHHHHhhcChhhhhh-hhhhHHHHHHHHHHHhhhhh
Confidence 999999999999999 888888888 55999999999999996554
No 6
>KOG0952|consensus
Probab=100.00 E-value=6.3e-60 Score=519.03 Aligned_cols=582 Identities=20% Similarity=0.275 Sum_probs=418.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccC-CCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQEN-RIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~-~l~~i~lvVvDE~H~l~d 79 (693)
||+|+++.|.+....+|++|.+++|++.-.... ...++|||+|||||+.+.|++..+. .+..+++||+||+|++-|
T Consensus 176 La~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd 252 (1230)
T KOG0952|consen 176 LAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD 252 (1230)
T ss_pred HHHHHHHHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC
Confidence 789999999998888999999999987644332 3789999999999999999877544 459999999999999987
Q ss_pred CCChHHHHHHHHHHhcc----CCCceEEEEcCcCCCHHHHHHhhcCC------CccCCCCcccceeeEEeCceeeeecCC
Q psy15878 80 PQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIEGI------TYVENSRPTKHSEYVTVDKRVFQSFDG 149 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~----~~~~qii~lSATl~n~~~la~~l~~~------~~~~~~rpv~l~~~~~~~~~~~~~~~~ 149 (693)
.||+.+|.++.|..++ ...++|||+|||+||..++|.||+.+ .|...|||+|+...+... ... .
T Consensus 253 -~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~----k~~-~ 326 (1230)
T KOG0952|consen 253 -DRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGI----KGK-K 326 (1230)
T ss_pred -cccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEee----ecc-c
Confidence 8999999999998743 45789999999999999999999985 578899999998765311 110 0
Q ss_pred CCchhhhcccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCC-C-cccchhhHHHHHHHHHhccC
Q psy15878 150 KSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPG-T-KEYKKQEKEDLIEALKEEND 227 (693)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~ 227 (693)
...+. ..+ .....+.+.+.++++.+|+|||++|..+.+.|+.|.+..... . .-+..
T Consensus 327 ~~~~~-~~~------d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~--------------- 384 (1230)
T KOG0952|consen 327 NRQQK-KNI------DEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLP--------------- 384 (1230)
T ss_pred chhhh-hhH------HHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCC---------------
Confidence 00110 011 222345667777799999999999999999999998732110 0 01111
Q ss_pred CccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCc--C---C-CccCCHH
Q psy15878 228 GKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY--V---G-RDFISLN 301 (693)
Q Consensus 228 ~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~--~---g-~~~~s~~ 301 (693)
+..+..|.++++.|+++||+||...+|..+|+.|..|.++|+|||+|+++|||+|+..|||.... + | ....+..
T Consensus 385 ~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgil 464 (1230)
T KOG0952|consen 385 SPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGIL 464 (1230)
T ss_pred ChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHH
Confidence 11235788899999999999999999999999999999999999999999999999999998532 1 1 1347888
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhh
Q psy15878 302 MYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTL 381 (693)
Q Consensus 302 ~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~ 381 (693)
+.+|+.|||||+++|..|.++++++.. ..+.|..++.+.. |++|+| ...|.++++++|++|++.+.+++.+|+++||
T Consensus 465 DVlQifGRAGRPqFd~~G~giIiTt~d-kl~~Y~sLl~~~~-piES~~-~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTy 541 (1230)
T KOG0952|consen 465 DVLQIFGRAGRPQFDSSGEGIIITTRD-KLDHYESLLTGQN-PIESQL-LPCLIDNLNAEISLGTVTNVDEAVEWLKYTY 541 (1230)
T ss_pred HHHHHHhccCCCCCCCCceEEEEeccc-HHHHHHHHHcCCC-hhHHHH-HHHHHHhhhhheeeceeecHHHHHHHhhcee
Confidence 999999999999999999999999998 8999999999887 899999 5899999999999999999999999999999
Q ss_pred hhh--ccCchhhhh------------hhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHh
Q psy15878 382 FYQ--LKSPEDQQT------------FLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSD 447 (693)
Q Consensus 382 ~~~--~~~p~~~~~------------~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~ 447 (693)
+|. .+||..|+. ....+++..+++.|....+|..+...+.+.+|++||+++.+||..++++.|.+.
T Consensus 542 lYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~ 621 (1230)
T KOG0952|consen 542 LYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNL 621 (1230)
T ss_pred EEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhc
Confidence 998 799988654 123345667788898889999888888899999999999999999999999987
Q ss_pred hhhhhccccccccccEEEeeccCCccCCCCCccccccchhhHhhhcChhHHHHHHHcCccHHHHHHHhcCCchhhHHHHH
Q psy15878 448 LLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALL 527 (693)
Q Consensus 448 l~~~~~~~~l~~~l~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 527 (693)
.+... .+.+.|++++.+.++. .+ .++.+....+++|..+.- ....+|.+. |+ -+++
T Consensus 622 ~k~~~---se~~iL~lis~aeEfs------~i-k~R~eE~k~l~el~~~~~-~~~~~~~~~--------gk-----~nil 677 (1230)
T KOG0952|consen 622 PKSFY---SEDDILALISMAEEFS------QI-KVREEEKKELKELNEDSC-EKYPFGGEK--------GK-----VNIL 677 (1230)
T ss_pred ccccC---CHHHHHHHHHhhHhhh------hh-hhhhhhHHHHHHHHhccc-ccccccccc--------hh-----HHHH
Confidence 76443 3568889999988884 22 344444433333211100 000111100 00 0111
Q ss_pred HHHHHHHH---HHHHhcCCCHHHHHHHhCCCchhHHH-HHHHHHHHHHHHHHHhhhCc-chhhhHH-------Hhh----
Q psy15878 528 CRFFHACI---LYDVLNFDNHQKVAKMYGIQNSHLQN-FLNVTSYFASKVYRFCEELP-ELWCYKQ-------LLT---- 591 (693)
Q Consensus 528 ~~~~~a~~---l~~~i~e~~~~~i~~~y~v~~g~~~~-l~~~~~~~a~~~~~~~~~~~-~~~~~~~-------~l~---- 591 (693)
.+.|..-- ...+.++.. .....--.+.++..|. +.++.+.+++....+|+++. .+|.+.. .++
T Consensus 678 ~q~~Is~~~~~~f~L~sD~~-yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~ier~mw~~~~~l~qf~~~~~~~~~ 756 (1230)
T KOG0952|consen 678 LQAYISRTEVKDFSLMSDSL-YVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRIERRMWDFFIPLKQFTLLLNRKER 756 (1230)
T ss_pred HHhhhhccceeeeeeccCcc-cccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccchhhh
Confidence 11111100 000000000 0000000011222221 44456667777777888665 2453211 122
Q ss_pred ------hHHHHhhcc--CccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHH
Q psy15878 592 ------DLPQTLMYC--RAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMV 642 (693)
Q Consensus 592 ------~~~~rl~~g--~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~ 642 (693)
.|+.++ +| ....-.-+.+++++|...+++++..|.+|+..|..+.+.+..
T Consensus 757 ~~~~l~~L~~~~-~g~~w~~~~~~~k~l~~ip~v~v~a~~~p~t~~vlri~~~~~~~f~ 814 (1230)
T KOG0952|consen 757 KKLTLLLLRKDE-LGELWHNVPYGLKQLSGIPLVNVEALIQPITRNVLRIEVAITPDFE 814 (1230)
T ss_pred hcchHHhhhhhh-hccccccCchhhhhhccCCceehhhhhccchhhhheeeeccCCceE
Confidence 122111 11 111111156899999999999999999999999998877654
No 7
>KOG0951|consensus
Probab=100.00 E-value=1.9e-52 Score=464.53 Aligned_cols=588 Identities=20% Similarity=0.274 Sum_probs=422.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||+|.+..|++....+|++|.+++|+.. .........+|||||||+++.+.++--.....+-++++|+||+|++.|
T Consensus 376 LvqE~VgsfSkRla~~GI~V~ElTgD~~---l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhD- 451 (1674)
T KOG0951|consen 376 LVQEMVGSFSKRLAPLGITVLELTGDSQ---LGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHD- 451 (1674)
T ss_pred HHHHHHHHHHhhccccCcEEEEeccccc---chhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhccc-
Confidence 6899999999999999999999999753 223334789999999999998888754445567899999999999987
Q ss_pred CChHHHHHHHHHHhccC----CCceEEEEcCcCCCHHHHHHhhcCC-----CccCCCCcccceeeEEeCceeeeecCCCC
Q psy15878 81 QRGPILECVVSKVLYLK----KSIQIFAMSATIGNINALSTFIEGI-----TYVENSRPTKHSEYVTVDKRVFQSFDGKS 151 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~----~~~qii~lSATl~n~~~la~~l~~~-----~~~~~~rpv~l~~~~~~~~~~~~~~~~~~ 151 (693)
+||+.+|.++.|..... ..++++|||||+||.++++.||+.+ .|.+++||+|+.+.+. .+...+.
T Consensus 452 dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~I------gi~ek~~ 525 (1674)
T KOG0951|consen 452 DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYI------GITEKKP 525 (1674)
T ss_pred ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEe------ccccCCc
Confidence 89999999999986443 3689999999999999999999886 4778999999985432 1111111
Q ss_pred chhhhcccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCc---cc--chhhHHHHHHHHHh
Q psy15878 152 LTEIYADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTK---EY--KKQEKEDLIEALKE 224 (693)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~---~~--~~~~~~~~~~~l~~ 224 (693)
..-...+ ..-...+++. ..+|||||+.+|+++-++|+.+++.... .+ .| ......+ -++.
T Consensus 526 ~~~~qam---------Ne~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le-~dtls~fmre~s~s~e---ilrt 592 (1674)
T KOG0951|consen 526 LKRFQAM---------NEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALE-EDTLSRFMREDSASRE---ILRT 592 (1674)
T ss_pred hHHHHHH---------HHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhh-hhHHHHHHhcccchhh---hhhh
Confidence 1110011 0011223333 5699999999999999999999862211 00 00 0000001 1222
Q ss_pred ccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCc-----CC-CccC
Q psy15878 225 ENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY-----VG-RDFI 298 (693)
Q Consensus 225 ~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~-----~g-~~~~ 298 (693)
..+...++.|++++++|++.||+||++.+|..+|+.|++|.++|+|+|.|++||||+|+.+|||..+. .| +.++
T Consensus 593 ea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~el 672 (1674)
T KOG0951|consen 593 EAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTEL 672 (1674)
T ss_pred hhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccC
Confidence 22334578999999999999999999999999999999999999999999999999999999998642 22 3568
Q ss_pred CHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHH
Q psy15878 299 SLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIK 378 (693)
Q Consensus 299 s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~ 378 (693)
++.+.+||.|||||+++|..|+.+++...+ +..++..+++.++ |++|++. ..+.+.+++.|+.| +.+..+..+|+.
T Consensus 673 sp~dv~qmlgragrp~~D~~gegiiit~~s-e~qyyls~mn~qL-piesq~~-~rl~d~lnaeiv~G-v~~~~d~~~wl~ 748 (1674)
T KOG0951|consen 673 SPLDVMQMLGRAGRPQYDTCGEGIIITDHS-ELQYYLSLMNQQL-PIESQFV-SRLADCLNAEIVLG-VRSARDAVDWLG 748 (1674)
T ss_pred CHHHHHHHHhhcCCCccCcCCceeeccCch-HhhhhHHhhhhcC-CChHHHH-HHhhhhhhhhhhcc-hhhHHHHHhhhc
Confidence 999999999999999999999999999988 8889999999999 8999994 88999999999999 999999999999
Q ss_pred Hhhhhh--ccCchhhhh----------hhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHH
Q psy15878 379 HTLFYQ--LKSPEDQQT----------FLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYS 446 (693)
Q Consensus 379 ~t~~~~--~~~p~~~~~----------~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~ 446 (693)
+||+|. .+||..+.. ..-.+++..+.-.|.++|+|..+...|.+++|++|++++++|+...++....+
T Consensus 749 yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~ 828 (1674)
T KOG0951|consen 749 YTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNE 828 (1674)
T ss_pred ceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHh
Confidence 999998 688876433 11224566778889999999988778889999999999999999999999999
Q ss_pred hhhhhhccccccccccEEEeeccCCccCCCCCccccccchhhHhhhcChhHHHHHHHcCccHHHHHHHhcCCchhhHHHH
Q psy15878 447 DLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKAL 526 (693)
Q Consensus 447 ~l~~~~~~~~l~~~l~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 526 (693)
.|...+..+ +.+.++...-+|. ++ .++.+.. .+.+..+++++|+..- ....+
T Consensus 829 ~L~~~~~~i---~lfrifs~seEfk-----~~--svr~~ek-------~el~~l~~~vpIpire---~l~~p-------- 880 (1674)
T KOG0951|consen 829 LLKETMSEI---DLFRIFSKSEEFK-----YV--SVREEEK-------MELAKLLERVPIPIRE---NLDEP-------- 880 (1674)
T ss_pred hhhhhhccc---hhhhhhhhccccc-----cC--CccHHHH-------HHhhhhcccCCcCchh---ccccc--------
Confidence 998876542 3333444444443 11 2222221 1122233455554320 00001
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhh-hHHHhhhHHHHhhccCccch
Q psy15878 527 LCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWC-YKQLLTDLPQTLMYCRAPNL 605 (693)
Q Consensus 527 ~~~~~~a~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~-~~~~l~~~~~rl~~g~~~el 605 (693)
..+.+.+|+..++..-+.= |.+ .-+...+.++|.++..++.++|-.-| |. .....-.+-+....-.++..
T Consensus 881 --~akinvllq~yiS~lk~eG----~al-~~dmv~i~q~agRl~Ra~fei~l~rg--w~~~~~~~l~~ck~v~~r~w~~~ 951 (1674)
T KOG0951|consen 881 --SAKINVLLQSYISQLKLEG----FAL-TSDMVYITQSAGRLFRALFEIVLKRG--WAGLAQMALNLCKMVEKRMWPTQ 951 (1674)
T ss_pred --hHHHHHHHHHHHhhccccc----cee-eeeEEEeccchHHHHHHHHHHHhhcC--cchHHHHHHHhHhHhhhhccccc
Confidence 1233334444443322110 101 11333355688888888888887667 54 44455555666666778888
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHh--cCCCHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKI--RHLPLRSA 653 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~--~~~~~~~a 653 (693)
.+|.|.+|+.....|.|-..-+ .-......++.++-.++ +++|...-
T Consensus 952 ~plrqf~~~~~ev~~~lE~k~~-~~~r~~~l~~~elg~lI~~~k~G~~l~ 1000 (1674)
T KOG0951|consen 952 TPLRQFKGCPKEVLRRLEKKEL-PWGRYYDLDPAELGELIGVPKMGKPLH 1000 (1674)
T ss_pred CchhhcCCCCHHHHHHHHhccC-cchhhhccCHHHHHHHhcCcccChhHH
Confidence 9999999999988888866522 23344444566666655 34664433
No 8
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.4e-50 Score=419.99 Aligned_cols=506 Identities=21% Similarity=0.272 Sum_probs=367.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCc----cccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPP----TKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~----~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
||+|||++|++.-.++|++|..-.|..-.... ....-..+||||+|+|-++.+++.- ..+.+++.|||||+|+
T Consensus 273 LANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---~~lgdiGtVVIDEiHt 349 (830)
T COG1202 273 LANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---KDLGDIGTVVIDEIHT 349 (830)
T ss_pred hhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---CcccccceEEeeeeee
Confidence 78999999999889999999887764311111 1111257899999999998888862 7889999999999999
Q ss_pred cCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhh
Q psy15878 77 LNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIY 156 (693)
Q Consensus 77 l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 156 (693)
+.|..||+.+..++.|++++.+..|+|++|||++|++++++.|++.++..+.||||++.++.+...
T Consensus 350 L~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~lV~y~~RPVplErHlvf~~~-------------- 415 (830)
T COG1202 350 LEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERHLVFARN-------------- 415 (830)
T ss_pred ccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCeeEeecCCCCChhHeeeeecC--------------
Confidence 999999999999999999999999999999999999999999999999999999999987753211
Q ss_pred cccccccCCCCChhhHHHHHh----------cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhcc
Q psy15878 157 ADNLDYSLTGSGPDAVLHLVQ----------GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEEN 226 (693)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~l~~----------~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (693)
...+.+.+..++. -.+|+|||++||+.|..+|..|...|..
T Consensus 416 --------e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~--------------------- 466 (830)
T COG1202 416 --------ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLK--------------------- 466 (830)
T ss_pred --------chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcc---------------------
Confidence 2233455555554 4689999999999999999999875443
Q ss_pred CCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHH
Q psy15878 227 DGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQM 306 (693)
Q Consensus 227 ~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr 306 (693)
++++|+||+..+|+.+|.+|.++.+.++|+|..|++|||+|+..||+.+-..|.+|+|+.+|.||
T Consensus 467 ---------------a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM 531 (830)
T COG1202 467 ---------------AAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQM 531 (830)
T ss_pred ---------------cccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHH
Confidence 88999999999999999999999999999999999999999999999988889999999999999
Q ss_pred hhccCCCCCCCCCcEEEEecccc---------cHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHH
Q psy15878 307 VGRAGRTGLQESGESIMLCKTMQ---------DFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLI 377 (693)
Q Consensus 307 ~GRaGR~g~d~~G~~i~l~~~~~---------~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l 377 (693)
.|||||+++++.|.+|+++.+.. +.+..-++++++++|+.-...+..-.+.+|+ ..+..++.+++.+.-
T Consensus 532 ~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~v~ 609 (830)
T COG1202 532 LGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIERVN 609 (830)
T ss_pred hcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhhcC
Confidence 99999999999999999986541 3334568899999999888875544555555 455566666555543
Q ss_pred HHhhhhhccCchhhhhhhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhhhccccc
Q psy15878 378 KHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCL 457 (693)
Q Consensus 378 ~~t~~~~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~~~~~~l 457 (693)
..++-.. -..+.++..|++.|||..+++ .+.+|+.|++++.+.+.|.+|..|.+.+...+
T Consensus 610 ~~~~g~~-------------~~~~k~l~~Lee~g~i~~~G~--~v~~T~yGrava~~Fl~p~~a~~Ir~~v~~~~----- 669 (830)
T COG1202 610 SLMLGAA-------------FDPKKALSKLEEYGMIKKKGN--IVRPTPYGRAVAMSFLGPSEAEFIREGVLASM----- 669 (830)
T ss_pred hhhcccc-------------CCHHHHHHHHHhcCCeeccCC--EeeeccccceeEEeecCchHHHHHHHhhhccC-----
Confidence 2222221 113568999999999997633 49999999999999999999999998864332
Q ss_pred cccccEEEeeccCCc-cCCCCCcc----ccccchh-hHhh--------------hcChhHHHHHHHcCccHHHHHHHhcC
Q psy15878 458 LNSLHMLFLVIPLEY-RIPSDGIL----LSRSKVY-DRYT--------------KFHPQTLRVAEALGVTENLVALNVTG 517 (693)
Q Consensus 458 ~~~l~ll~l~~~~~~-~~~~~~~~----~~~~~~~-~~~~--------------~l~~~~~~~~~~~gi~~~~~~~~~~~ 517 (693)
+.|.+.....||.. .++..+.+ ..+.... .+|+ ++++..+.. .+.+-.+|.. .
T Consensus 670 -~pl~i~~~l~pfE~ayls~~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~--l~~i~~df~~----c 742 (830)
T COG1202 670 -DPLRIAAELEPFENAYLSGFLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEK--LLLIYMDFLN----C 742 (830)
T ss_pred -ChHhHhhccccccccccChHHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHH--HHHHHHHHhc----C
Confidence 23333333344431 00000000 0000000 0111 111111110 0111111100 0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhcCCCHHHHH----HHhCCC--chhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhh
Q psy15878 518 KLKDEKKALLCRFFHACILYDVLNFDNHQKVA----KMYGIQ--NSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLT 591 (693)
Q Consensus 518 ~~~~~~~~~~~~~~~a~~l~~~i~e~~~~~i~----~~y~v~--~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 591 (693)
.-.+. -....+..+-+++.--++..+..+|+ ++|||. +||+.+-.++.-....++-++|..... -...+...
T Consensus 743 ~c~d~-ce~~~~~lse~ii~lR~~gk~p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~k-r~~~~ea~ 820 (830)
T COG1202 743 TCRDC-CECAEQRLSEKIIELRIEGKDPSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKK-REVEAEAK 820 (830)
T ss_pred chhhh-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHH
Confidence 00000 01223444456666677888877776 678887 999999999999999999999976663 22344445
Q ss_pred hHHHHhh
Q psy15878 592 DLPQTLM 598 (693)
Q Consensus 592 ~~~~rl~ 598 (693)
.+.+.++
T Consensus 821 ~lk~~ie 827 (830)
T COG1202 821 ALKKKIE 827 (830)
T ss_pred HHHHHhh
Confidence 5555444
No 9
>KOG0947|consensus
Probab=100.00 E-value=2.4e-38 Score=345.11 Aligned_cols=355 Identities=23% Similarity=0.386 Sum_probs=269.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchh--ccCCCCcccEEEEecccccC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLI--QENRIDEIGLIVIDEFHMLN 78 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~--~~~~l~~i~lvVvDE~H~l~ 78 (693)
|-+||+.+|+..+...| .++|+..-. ..+.++|+|.|.+ |+++ +.+.++++.+||+||+|.+.
T Consensus 352 LSNQKfRDFk~tF~Dvg----LlTGDvqin-------PeAsCLIMTTEIL----RsMLYrgadliRDvE~VIFDEVHYiN 416 (1248)
T KOG0947|consen 352 LSNQKFRDFKETFGDVG----LLTGDVQIN-------PEASCLIMTTEIL----RSMLYRGADLIRDVEFVIFDEVHYIN 416 (1248)
T ss_pred hccchHHHHHHhccccc----eeecceeeC-------CCcceEeehHHHH----HHHHhcccchhhccceEEEeeeeecc
Confidence 45799999988776655 567764322 4678999999975 5544 45677999999999999999
Q ss_pred CCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCC------CccCCCCcccceeeEEeCceeeeecCCCCc
Q psy15878 79 EPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI------TYVENSRPTKHSEYVTVDKRVFQSFDGKSL 152 (693)
Q Consensus 79 d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~------~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 152 (693)
|..||..||.++-.+ ++.+++|+||||+||..+||+|+|.. +..+.-||||++.++......+.+-..+..
T Consensus 417 D~eRGvVWEEViIMl---P~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~ 493 (1248)
T KOG0947|consen 417 DVERGVVWEEVIIML---PRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGI 493 (1248)
T ss_pred cccccccceeeeeec---cccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccch
Confidence 999999999998765 78999999999999999999999863 355669999999999888777753221110
Q ss_pred hhhh--------------ccc------------------ccccCC----------CCChhhHHHHHh-----cCCceEEE
Q psy15878 153 TEIY--------------ADN------------------LDYSLT----------GSGPDAVLHLVQ-----GNLMVLIF 185 (693)
Q Consensus 153 ~~~~--------------~~~------------------~~~~~~----------~~~~~~l~~l~~-----~~~~vLVF 185 (693)
...+ ... ..+... ..+...+..++. +--|++||
T Consensus 494 fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvF 573 (1248)
T KOG0947|consen 494 FLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVF 573 (1248)
T ss_pred hhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEE
Confidence 0000 000 000000 111123444444 67799999
Q ss_pred eCChHHHHHHHHHhhhccCCCCcccchhhHHHH---HHHHH---hccCCccchHH--HHHHhhceEEEcCCCCHHHHHHH
Q psy15878 186 CSSKIACSNLALRLQFDRFPGTKEYKKQEKEDL---IEALK---EENDGKLSTNL--EECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 186 ~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~---~~~l~---~~~~~~~~~~L--~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
|-||+.|+..|+.|...... +..++.++ ++... +..+..+.+.| .+++..|++.||||+-+--++.|
T Consensus 574 vFSkkrCde~a~~L~~~nL~-----~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~V 648 (1248)
T KOG0947|consen 574 VFSKKRCDEYADYLTNLNLT-----DSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVV 648 (1248)
T ss_pred EEccccHHHHHHHHhccCcc-----cchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHH
Confidence 99999999999999873222 34444443 22211 11233344444 57888999999999999999999
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCCcEEEEecC--cCCCc--cCCHHHHHHHhhccCCCCCCCCCcEEEEeccc-ccHH
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRD--FISLNMYKQMVGRAGRTGLQESGESIMLCKTM-QDFL 332 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~--~~g~~--~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~-~~~~ 332 (693)
|-.|..|.++||+||-|+++|||.|+.+||+.+- .+|.+ .+.+-+|.||+|||||.|.|..|.+++++... .+..
T Consensus 649 E~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a 728 (1248)
T KOG0947|consen 649 ELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAA 728 (1248)
T ss_pred HHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHH
Confidence 9999999999999999999999999999999863 34543 57899999999999999999999999999765 4778
Q ss_pred HHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhh
Q psy15878 333 RFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384 (693)
Q Consensus 333 ~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~ 384 (693)
.+.+++.+.+.++.|++ .....+||.++... .-.+.+.++++|.-.
T Consensus 729 ~l~~li~G~~~~L~SQF--RlTY~MILnLLRve----~lrvEdm~krSf~E~ 774 (1248)
T KOG0947|consen 729 TLKRLIMGGPTRLESQF--RLTYGMILNLLRVE----ALRVEDMMKRSFSEF 774 (1248)
T ss_pred HHhhHhcCCCchhhhhh--hhHHHHHHHHHHHH----HHHHHHHHHHHhhhh
Confidence 88999999999999999 67788888887643 246778888888754
No 10
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=4.7e-37 Score=365.50 Aligned_cols=408 Identities=17% Similarity=0.199 Sum_probs=265.4
Q ss_pred ChhhHHHHHHHHh------------hhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccE
Q psy15878 1 MVHEKYQSLAKAA------------EEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68 (693)
Q Consensus 1 L~~e~~~~l~~~~------------~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~l 68 (693)
|++|+++.|+... ...+++|..++|++....+.+...+.+||+|+|||++..++.+- ....++++++
T Consensus 49 La~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk-~r~~L~~Vr~ 127 (1490)
T PRK09751 49 LGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR-ARETLRGVET 127 (1490)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh-hhhhhccCCE
Confidence 5778888876421 12578999999987654433333367999999999998876541 2357899999
Q ss_pred EEEecccccCCCCChHHHHHHHHHHhcc-CCCceEEEEcCcCCCHHHHHHhhcCC----Ccc-CCCCcccceeeEEeCce
Q psy15878 69 IVIDEFHMLNEPQRGPILECVVSKVLYL-KKSIQIFAMSATIGNINALSTFIEGI----TYV-ENSRPTKHSEYVTVDKR 142 (693)
Q Consensus 69 vVvDE~H~l~d~~rg~~le~il~~l~~~-~~~~qii~lSATl~n~~~la~~l~~~----~~~-~~~rpv~l~~~~~~~~~ 142 (693)
|||||+|.+.+..||.+++..+.++... ..+.|+|++|||++|++++++||+.. .+. ...++.++...+....
T Consensus 128 VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d- 206 (1490)
T PRK09751 128 VIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVAN- 206 (1490)
T ss_pred EEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCc-
Confidence 9999999999878999999999999866 45789999999999999999999753 111 1223333332221110
Q ss_pred eeeecCCCCchhhhcccccccCCC---CChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccc-hhhHHHH
Q psy15878 143 VFQSFDGKSLTEIYADNLDYSLTG---SGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYK-KQEKEDL 218 (693)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~-~~~~~~~ 218 (693)
...+....... . .......... .....+...+..+.++|||||||+.|+.++..|.+ .. ++... .......
T Consensus 207 ~~~~~~~~~~~-~-~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~--~~-~~~~~~~~~~~~~ 281 (1490)
T PRK09751 207 MDDVSSVASGT-G-EDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNE--LY-AARLQRSPSIAVD 281 (1490)
T ss_pred hhhcccccccc-c-cccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHH--hh-hhhccccccccch
Confidence 00000000000 0 0000000000 00112333334778999999999999999999976 21 00000 0000000
Q ss_pred HHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccC
Q psy15878 219 IEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFI 298 (693)
Q Consensus 219 ~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~ 298 (693)
...+.+.. +.....+.......+.+|||+|++++|..+|+.|++|.+++||||+++++|||+|++++||+++. |.
T Consensus 282 ~~~~~~~~-~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gs----P~ 356 (1490)
T PRK09751 282 AAHFESTS-GATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVAT----PL 356 (1490)
T ss_pred hhhhhhcc-ccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCC----CC
Confidence 00110000 00000000001123789999999999999999999999999999999999999999999999875 88
Q ss_pred CHHHHHHHhhccCCCCCCCCCcEEEEecccccHH----HHHHHHhCCCCcccccCC-chhHHHHHHHHHHhcccCCHHHH
Q psy15878 299 SLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFL----RFSSMMNAGPEPISSHMD-PPTLVDLILEVVAANLCSSLEDV 373 (693)
Q Consensus 299 s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~----~~~~~l~~~~~~i~s~l~-~~~l~~~il~~i~~~~~~~~~~~ 373 (693)
|+++|+||+|||||.. +..+.++++..+..+.- ..+.++.+.+|++..... -..|..+++.+++.+ ..+.+++
T Consensus 357 sVas~LQRiGRAGR~~-gg~s~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~-~~~~d~l 434 (1490)
T PRK09751 357 SVASGLQRIGRAGHQV-GGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMD-ALQVDEW 434 (1490)
T ss_pred CHHHHHHHhCCCCCCC-CCccEEEEEeCcHHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcC-CCCHHHH
Confidence 9999999999999973 34666776555432211 135678888888777654 257788888887754 5578999
Q ss_pred HHHHHHhhhhhccCchhhhhhhhhhHHHHHHHHHhhc----------CCeEeeccCccEEecHHHHHH
Q psy15878 374 KTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASK----------GTMLTMNEAGHLSLTSIAKAA 431 (693)
Q Consensus 374 ~~~l~~t~~~~~~~p~~~~~~~~~~~~~~~l~~L~~~----------g~i~~~~~~~~~~~T~lG~~~ 431 (693)
.+.+..++.|+ ....+.++.++++|... .-|..+.+++.+..++-.+..
T Consensus 435 ~~~vrra~pf~---------~L~~~~f~~vl~~L~~~y~~~~~~~~~~ri~~d~~~~~l~~r~g~~~~ 493 (1490)
T PRK09751 435 YSRVRRAAPWK---------DLPRRVFDATLDMLSGRYPSGDFSAFRPKLVWNRETGILTARPGAQLL 493 (1490)
T ss_pred HHHhhccCCcc---------cCCHHHHHHHHHHHhccccccccccccceeEEecCCCeEEEChHHHHH
Confidence 99999999888 34556678889998752 124444444556666543333
No 11
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2e-36 Score=355.75 Aligned_cols=344 Identities=17% Similarity=0.195 Sum_probs=242.8
Q ss_pred CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhcc
Q psy15878 17 KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYL 96 (693)
Q Consensus 17 ~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~ 96 (693)
+++|..++|++..........+.++|+|||||++..++++......+.++++||+||+|.+.+..||..++..+.++...
T Consensus 124 ~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l 203 (876)
T PRK13767 124 EIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEEL 203 (876)
T ss_pred CeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHh
Confidence 67889999987644433333367899999999998777653323367899999999999999889999999999999876
Q ss_pred C-CCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCce-eeeecCCCCchhhhcccccccC--CCCChhhH
Q psy15878 97 K-KSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKR-VFQSFDGKSLTEIYADNLDYSL--TGSGPDAV 172 (693)
Q Consensus 97 ~-~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l 172 (693)
. +++|+|++|||++|++++++|++........+++.+......... +....+.... .. .... .....+.+
T Consensus 204 ~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l-----~~-~~~~~~~~~l~~~L 277 (876)
T PRK13767 204 AGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDL-----IH-TPAEEISEALYETL 277 (876)
T ss_pred cCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccc-----cc-cccchhHHHHHHHH
Confidence 5 678999999999999999999976533333444332211000000 0000000000 00 0000 00112234
Q ss_pred HHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHH
Q psy15878 173 LHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAG 252 (693)
Q Consensus 173 ~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~ 252 (693)
.+++..++++||||||++.|+.++..|.+ .. +. .....++++|||+|+++
T Consensus 278 ~~~i~~~~~~LVF~nTr~~ae~la~~L~~--~~-~~---------------------------~~~~~~i~~hHg~ls~~ 327 (876)
T PRK13767 278 HELIKEHRTTLIFTNTRSGAERVLYNLRK--RF-PE---------------------------EYDEDNIGAHHSSLSRE 327 (876)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHHH--hc-hh---------------------------hccccceeeeeCCCCHH
Confidence 44445788999999999999999999876 22 00 01124699999999999
Q ss_pred HHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccHH
Q psy15878 253 ERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFL 332 (693)
Q Consensus 253 eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~ 332 (693)
+|..+++.|++|.++|||||+++++|||+|++++||+++. |.+..+|+||+|||||.+. ..+..++++....+..
T Consensus 328 ~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~----P~sv~~ylQRiGRaGR~~g-~~~~g~ii~~~~~~l~ 402 (876)
T PRK13767 328 VRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGS----PKSVSRLLQRIGRAGHRLG-EVSKGRIIVVDRDDLV 402 (876)
T ss_pred HHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCC----CCCHHHHHHhcccCCCCCC-CCCcEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999874 7899999999999998742 2344444443331322
Q ss_pred H----HHHHHhCCCCcccccCC-chhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhhhhhhhHHHHHHHHH
Q psy15878 333 R----FSSMMNAGPEPISSHMD-PPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLL 407 (693)
Q Consensus 333 ~----~~~~l~~~~~~i~s~l~-~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~~~~~~~~~~~l~~L 407 (693)
. .+.+....++++.+... .+.+..+++.+++.+ ..+.+++.+++..+|.|+ ....+.++.++++|
T Consensus 403 e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~-~~~~~~~~~~~~~~~~~~---------~l~~~~~~~~l~~l 472 (876)
T PRK13767 403 ECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIER-PWDIEEAYNIVRRAYPYR---------DLSDEDFESVLRYL 472 (876)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcC-CCCHHHHHHHHhccCCcc---------cCCHHHHHHHHHHH
Confidence 1 24455666666555432 357788888877765 678999999999999998 23445678889999
Q ss_pred hhcC
Q psy15878 408 ASKG 411 (693)
Q Consensus 408 ~~~g 411 (693)
...+
T Consensus 473 ~~~~ 476 (876)
T PRK13767 473 AGDY 476 (876)
T ss_pred hccC
Confidence 7663
No 12
>KOG0948|consensus
Probab=100.00 E-value=3.4e-37 Score=328.59 Aligned_cols=355 Identities=22% Similarity=0.378 Sum_probs=263.0
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|-+|||.+|..-++..|+ .+|+..-. ..+..+|+|.|.+-+++-+ +...++.+.+||+||+|.+-|.
T Consensus 184 LSNQKYREl~~EF~DVGL----MTGDVTIn-------P~ASCLVMTTEILRsMLYR--GSEvmrEVaWVIFDEIHYMRDk 250 (1041)
T KOG0948|consen 184 LSNQKYRELLEEFKDVGL----MTGDVTIN-------PDASCLVMTTEILRSMLYR--GSEVMREVAWVIFDEIHYMRDK 250 (1041)
T ss_pred hcchhHHHHHHHhcccce----eecceeeC-------CCCceeeeHHHHHHHHHhc--cchHhheeeeEEeeeehhcccc
Confidence 568999998777666665 45543322 4568899999975333322 4557899999999999999999
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcC------CCccCCCCcccceeeEEe--CceeeeecCC-CC
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEG------ITYVENSRPTKHSEYVTV--DKRVFQSFDG-KS 151 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~------~~~~~~~rpv~l~~~~~~--~~~~~~~~~~-~~ 151 (693)
.||..||..+-.+ +.+.+.|+||||+||+.+||+|+.. .++-+++||.|+..++.. ++.+|.+... +.
T Consensus 251 ERGVVWEETIIll---P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~ 327 (1041)
T KOG0948|consen 251 ERGVVWEETIILL---PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGK 327 (1041)
T ss_pred ccceeeeeeEEec---cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccc
Confidence 9999999877654 7889999999999999999999953 467789999999998754 4556655432 22
Q ss_pred chh---hhcccc---c-----ccC---------------CCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhcc
Q psy15878 152 LTE---IYADNL---D-----YSL---------------TGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDR 203 (693)
Q Consensus 152 ~~~---~~~~~~---~-----~~~---------------~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~ 203 (693)
+.. ...+.. . +.. ...+.-.++..+- ...|||||+-|+++||..|..+.+.
T Consensus 328 FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kl- 406 (1041)
T KOG0948|consen 328 FREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKL- 406 (1041)
T ss_pred cchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccC-
Confidence 221 111100 0 000 0112223333333 8899999999999999999998872
Q ss_pred CCCCcccchhhHHHHH--------HHHHhccCCccch--HHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecc
Q psy15878 204 FPGTKEYKKQEKEDLI--------EALKEENDGKLST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTS 273 (693)
Q Consensus 204 ~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~--~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~ 273 (693)
+++..+..+++ +.|.+ .|.++.. ....+++.||+.|||||-+--++.||-.|.+|.++||+||-
T Consensus 407 -----dfN~deEk~~V~~iF~nAi~~Lse-eDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATE 480 (1041)
T KOG0948|consen 407 -----DFNTDEEKELVETIFNNAIDQLSE-EDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATE 480 (1041)
T ss_pred -----cCCChhHHHHHHHHHHHHHHhcCh-hhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhh
Confidence 33322222222 22222 2333333 44578889999999999999999999999999999999999
Q ss_pred hhhcccCCCCcEEEEecC--cCCC--ccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccC
Q psy15878 274 TLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHM 349 (693)
Q Consensus 274 ~l~~Gvnlp~~~vVI~~~--~~g~--~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l 349 (693)
|++.|+|.|+.+||+... ++|. .|+|.-+|+||.|||||.|.|..|.|++++++..+....+.++.+..+|+.|.+
T Consensus 481 TFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaF 560 (1041)
T KOG0948|consen 481 TFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAF 560 (1041)
T ss_pred hhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhh
Confidence 999999999999999853 4453 589999999999999999999999999999998677778999999999999998
Q ss_pred CchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhh
Q psy15878 350 DPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384 (693)
Q Consensus 350 ~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~ 384 (693)
.-..+++|.+.....+. + ...++.+|+-.
T Consensus 561 --hLtYnMiLNLlRvEei~-p---e~~l~~SF~QF 589 (1041)
T KOG0948|consen 561 --HLTYNMILNLLRVEEIS-P---EYMLERSFHQF 589 (1041)
T ss_pred --hhHHHHHHHHHHHccCC-H---HHHHHHHHHHH
Confidence 56677888877654442 2 34566777644
No 13
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.3e-34 Score=322.15 Aligned_cols=352 Identities=21% Similarity=0.246 Sum_probs=263.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|..+....+...++.+|+.|...+|++.+........+.|||+|+|||.+..++..-.-...|.++.+|||||+|.+.+.
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcc
Confidence 45667788888999999999999999887766666668999999999999887765434567899999999999999998
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNL 160 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (693)
.||.++...+.|++.+.+++|.||+|||+++++++++||.........-.+....... -.+.. +....... +
T Consensus 165 KRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~--i~v~~--p~~~~~~~---~- 236 (814)
T COG1201 165 KRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLE--IKVIS--PVEDLIYD---E- 236 (814)
T ss_pred ccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcce--EEEEe--cCCccccc---c-
Confidence 9999999999999988879999999999999999999997642100000000000000 00000 10100000 0
Q ss_pred cccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhh
Q psy15878 161 DYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILY 240 (693)
Q Consensus 161 ~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~ 240 (693)
.......+.+.+++.....+|||+|||..+|.++..|.+.+. .
T Consensus 237 --~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~-----------------------------------~ 279 (814)
T COG1201 237 --ELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGP-----------------------------------D 279 (814)
T ss_pred --chhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcC-----------------------------------C
Confidence 001123345666666777999999999999999999987211 3
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCc
Q psy15878 241 GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGE 320 (693)
Q Consensus 241 gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~ 320 (693)
.+..|||+++.+.|..+|+.|++|.++++|||++++-|||+..++.||+... |.+++.+.||+||+|+.- +...+
T Consensus 280 ~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~S----P~sV~r~lQRiGRsgHr~-~~~Sk 354 (814)
T COG1201 280 IIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGS----PKSVNRFLQRIGRAGHRL-GEVSK 354 (814)
T ss_pred ceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCC----cHHHHHHhHhcccccccc-CCccc
Confidence 4999999999999999999999999999999999999999999999999873 889999999999999764 24566
Q ss_pred EEEEecccccHH----HHHHHHhCCCCccc---ccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhh
Q psy15878 321 SIMLCKTMQDFL----RFSSMMNAGPEPIS---SHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQT 393 (693)
Q Consensus 321 ~i~l~~~~~~~~----~~~~~l~~~~~~i~---s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~ 393 (693)
.++++.+..|.- .......+..+++. -+| ..+.++++.++... ..+.+++.+.++.++.|+
T Consensus 355 g~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~L--DVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~--------- 422 (814)
T COG1201 355 GIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPL--DVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYA--------- 422 (814)
T ss_pred EEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcch--hHHHHHHHHHHhhC-cCCHHHHHHHHHhccccc---------
Confidence 777766542211 12344555554333 333 56777777777666 788999999999999988
Q ss_pred hhhhhHHHHHHHHHhh--cCCeE
Q psy15878 394 FLETTLSEIVASLLAS--KGTML 414 (693)
Q Consensus 394 ~~~~~~~~~~l~~L~~--~g~i~ 414 (693)
+...+.++.++++|.. .+++.
T Consensus 423 ~L~~e~f~~v~~~l~~~~~~~~~ 445 (814)
T COG1201 423 DLSREDFRLVLRYLAGEKNVYAK 445 (814)
T ss_pred cCCHHHHHHHHHHHhhcccceeE
Confidence 3445667888999988 55554
No 14
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=5.3e-34 Score=328.81 Aligned_cols=352 Identities=16% Similarity=0.161 Sum_probs=231.9
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHH-HHhchh-ccCCCCcccEEEEecccccC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSK-LIGSLI-QENRIDEIGLIVIDEFHMLN 78 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~-Ll~~l~-~~~~l~~i~lvVvDE~H~l~ 78 (693)
||+|+++.+++++ ..++++..+.|++... +.....++++|+|+||++++. ++.... ....++++++||+||+|.+.
T Consensus 93 La~q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~ 170 (742)
T TIGR03817 93 LAADQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYR 170 (742)
T ss_pred HHHHHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhcc
Confidence 6889999999987 4588999999886532 222223679999999998753 222111 11237899999999999987
Q ss_pred CCCChHHHHHHHHHHhcc----CCCceEEEEcCcCCCHHHHHHhhcCCC---ccCCCCcccceeeEEeCceeeeecCCCC
Q psy15878 79 EPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIEGIT---YVENSRPTKHSEYVTVDKRVFQSFDGKS 151 (693)
Q Consensus 79 d~~rg~~le~il~~l~~~----~~~~qii~lSATl~n~~~la~~l~~~~---~~~~~rpv~l~~~~~~~~~~~~~~~~~~ 151 (693)
+ .+|..+..++.++++. ..++|++++|||++|+.++++++.... +..+..|.....................
T Consensus 171 g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 171 G-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENG 249 (742)
T ss_pred C-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccc
Confidence 6 6999999999888654 356899999999999888887664321 1122222221111111110000000000
Q ss_pred chhhhcccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccc
Q psy15878 152 LTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLS 231 (693)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 231 (693)
. ....+......+.+..++..+.++||||+|++.|+.++..+.+ .+ ...
T Consensus 250 ~------~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~--~l-----------------~~~------ 298 (742)
T TIGR03817 250 A------PVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARR--LL-----------------GEV------ 298 (742)
T ss_pred c------ccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHH--HH-----------------Hhh------
Confidence 0 0000000112334555556789999999999999999998876 11 000
Q ss_pred hHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccC
Q psy15878 232 TNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAG 311 (693)
Q Consensus 232 ~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaG 311 (693)
...+..++..||||+++++|+.+++.|++|++++||||+++++|||+|++++||++++ |.+..+|+||+||||
T Consensus 299 ---~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~----P~s~~~y~qRiGRaG 371 (742)
T TIGR03817 299 ---DPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGF----PGTRASLWQQAGRAG 371 (742)
T ss_pred ---ccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCC----CCCHHHHHHhccccC
Confidence 0011235889999999999999999999999999999999999999999999999987 679999999999999
Q ss_pred CCCCCCCCcEEEEecccccHHH--H---HHHHhCCCCcccccCC-chhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhc
Q psy15878 312 RTGLQESGESIMLCKTMQDFLR--F---SSMMNAGPEPISSHMD-PPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQL 385 (693)
Q Consensus 312 R~g~d~~G~~i~l~~~~~~~~~--~---~~~l~~~~~~i~s~l~-~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~ 385 (693)
|.| ..|.+++++.+. ..+. + ++++..++++...... ...+..+++.... ....+.++...|
T Consensus 372 R~G--~~g~ai~v~~~~-~~d~~~~~~~~~~~~~~~e~~~~~~~n~~il~~hl~~aa~-e~~l~~~~~~~~--------- 438 (742)
T TIGR03817 372 RRG--QGALVVLVARDD-PLDTYLVHHPEALFDRPVEATVFDPDNPYVLGPHLCCAAA-ELPLTEADLELF--------- 438 (742)
T ss_pred CCC--CCcEEEEEeCCC-hHHHHHHhCHHHHhcCCCccceeCCCcHHHHHHHHHHHHh-cCCCChHHHHhh---------
Confidence 999 679999988744 2222 2 3455655554322222 2345555554433 223333333211
Q ss_pred cCchhhhhhhhhhHHHHHHHHHhhcCCeEeec
Q psy15878 386 KSPEDQQTFLETTLSEIVASLLASKGTMLTMN 417 (693)
Q Consensus 386 ~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~ 417 (693)
.+...++++.|.+.|.+..++
T Consensus 439 -----------~~~~~~~~~~l~~~g~l~~~~ 459 (742)
T TIGR03817 439 -----------GPAAAEVLDQLVEQGLLRRRP 459 (742)
T ss_pred -----------chhHHHHHHHHHHCCcEEecC
Confidence 012456788999999998653
No 15
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.5e-33 Score=318.90 Aligned_cols=363 Identities=23% Similarity=0.373 Sum_probs=261.6
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|.+|||.+|.....+..-.|+.++|+..-. ..+.++|+|.|.+-+++.+ ...++.++..||+||+|.++|.
T Consensus 174 LsNQKyrdl~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyr--g~~~~~~i~~ViFDEvHyi~D~ 244 (1041)
T COG4581 174 LSNQKYRDLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYR--GSESLRDIEWVVFDEVHYIGDR 244 (1041)
T ss_pred hhhhHHHHHHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhcc--CcccccccceEEEEeeeecccc
Confidence 678999998776554433456677764321 5689999999875444433 4467899999999999999999
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCC------CccCCCCcccceeeEEeCceeeeecCCCCc-h
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI------TYVENSRPTKHSEYVTVDKRVFQSFDGKSL-T 153 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~------~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~-~ 153 (693)
.||..+|.++..+ +...|+|+||||+||+++|+.|++.. ++.++.||+|+..++.....+|.+...+.- .
T Consensus 245 eRG~VWEE~Ii~l---P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~ 321 (1041)
T COG4581 245 ERGVVWEEVIILL---PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFN 321 (1041)
T ss_pred ccchhHHHHHHhc---CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccch
Confidence 9999999998765 67889999999999999999999842 577899999999999888778776543221 0
Q ss_pred hh------hccc-c-------------ccc----------CC-CCChhhHHHHHh-cCCceEEEeCChHHHHHHHHHhhh
Q psy15878 154 EI------YADN-L-------------DYS----------LT-GSGPDAVLHLVQ-GNLMVLIFCSSKIACSNLALRLQF 201 (693)
Q Consensus 154 ~~------~~~~-~-------------~~~----------~~-~~~~~~l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~ 201 (693)
.. +.+. . .+. .. ...++.+..+.. +.-++|+|+-|++.|+..+..+..
T Consensus 322 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ 401 (1041)
T COG4581 322 AENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILST 401 (1041)
T ss_pred hhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcc
Confidence 00 0000 0 000 00 011222333333 788999999999999999999875
Q ss_pred ccCCCCcccchhhH--HHHH----HHHHhccCCccc---hHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEec
Q psy15878 202 DRFPGTKEYKKQEK--EDLI----EALKEENDGKLS---TNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCT 272 (693)
Q Consensus 202 ~~~~~~~~~~~~~~--~~~~----~~l~~~~~~~~~---~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT 272 (693)
.... .-.+++. ..++ ..|.++. ..+. ..+...+..|+++||+||-+..|..+++.|..|.++|++||
T Consensus 402 ldl~---~~~~~e~~i~~ii~~~i~~L~~ed-~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaT 477 (1041)
T COG4581 402 LDLV---LTEEKERAIREIIDHAIGDLAEED-RELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFAT 477 (1041)
T ss_pred cccc---cCCcHHHHHHHHHHHHHhhcChhh-hcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeeh
Confidence 1111 0011111 1122 2222222 2232 45678889999999999999999999999999999999999
Q ss_pred chhhcccCCCCcEEEEec----CcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEecccc-cHHHHHHHHhCCCCcccc
Q psy15878 273 STLAAGVNLPAQRVIIRD----SYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQ-DFLRFSSMMNAGPEPISS 347 (693)
Q Consensus 273 ~~l~~Gvnlp~~~vVI~~----~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~-~~~~~~~~l~~~~~~i~s 347 (693)
-|++.|+|+|+.+||+.. +..+..+++..+|.||.|||||.|+|..|.++++..+.. +......+..+..+++.|
T Consensus 478 eT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s 557 (1041)
T COG4581 478 ETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRS 557 (1041)
T ss_pred hhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchh
Confidence 999999999999999874 223346899999999999999999999999999955442 366778888999999999
Q ss_pred cCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhh
Q psy15878 348 HMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384 (693)
Q Consensus 348 ~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~ 384 (693)
.+. .-..+++.+.......+. ...+..+|.-.
T Consensus 558 ~f~--~sy~milnll~v~~l~~~---e~ll~~Sf~q~ 589 (1041)
T COG4581 558 QFR--LSYNMILNLLRVEGLQTA---EDLLERSFAQF 589 (1041)
T ss_pred hee--cchhHHHhhhhhcccCcH---HHHHHhhHHHH
Confidence 993 445555555554434333 44555666543
No 16
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.6e-33 Score=322.68 Aligned_cols=351 Identities=18% Similarity=0.145 Sum_probs=236.8
Q ss_pred hhhHHHHHH-HHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc-cCC
Q psy15878 2 VHEKYQSLA-KAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM-LNE 79 (693)
Q Consensus 2 ~~e~~~~l~-~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~-l~d 79 (693)
|.+..+.+. .++...|..|+...++.+. ...+++|+|+||+.+. +.+.....++++++|||||+|. ..+
T Consensus 58 A~qiA~rva~~~~~~~g~~VGy~vr~~~~------~s~~t~I~v~T~G~Ll---r~l~~d~~L~~v~~VIiDEaHER~L~ 128 (819)
T TIGR01970 58 ARSAAQRLASQLGEAVGQTVGYRVRGENK------VSRRTRLEVVTEGILT---RMIQDDPELDGVGALIFDEFHERSLD 128 (819)
T ss_pred HHHHHHHHHHHhCCCcCcEEEEEEccccc------cCCCCcEEEECCcHHH---HHHhhCcccccCCEEEEeccchhhhc
Confidence 455555553 3444455555544433211 1146799999999864 4444566789999999999995 444
Q ss_pred CCChHHHHHHHHHH-hccCCCceEEEEcCcCCCHHHHHHhhcC-CCccCCCCcccceeeEEeCceeeeecCCCCchhhhc
Q psy15878 80 PQRGPILECVVSKV-LYLKKSIQIFAMSATIGNINALSTFIEG-ITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYA 157 (693)
Q Consensus 80 ~~rg~~le~il~~l-~~~~~~~qii~lSATl~n~~~la~~l~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (693)
.+++-.+ +..+ ...+++.|+|+||||+++ +.+.++++. ..+....+..+++.++ ..........
T Consensus 129 ~Dl~L~l---l~~i~~~lr~dlqlIlmSATl~~-~~l~~~l~~~~vI~~~gr~~pVe~~y--------~~~~~~~~~~-- 194 (819)
T TIGR01970 129 ADLGLAL---ALDVQSSLREDLKILAMSATLDG-ERLSSLLPDAPVVESEGRSFPVEIRY--------LPLRGDQRLE-- 194 (819)
T ss_pred cchHHHH---HHHHHHhcCCCceEEEEeCCCCH-HHHHHHcCCCcEEEecCcceeeeeEE--------eecchhhhHH--
Confidence 4444322 2222 123578999999999964 557888753 3333333333332211 1000000000
Q ss_pred ccccccCCCCChhhHHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHH
Q psy15878 158 DNLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEE 236 (693)
Q Consensus 158 ~~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 236 (693)
......+..++. ..+++|||||++.+++.++..|.+ ..+
T Consensus 195 --------~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~--~~~------------------------------ 234 (819)
T TIGR01970 195 --------DAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAE--RLD------------------------------ 234 (819)
T ss_pred --------HHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHh--hcC------------------------------
Confidence 000122334444 578999999999999999999876 110
Q ss_pred HHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCC---------C-----ccCCHHH
Q psy15878 237 CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVG---------R-----DFISLNM 302 (693)
Q Consensus 237 ~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g---------~-----~~~s~~~ 302 (693)
....+..+||+|+.++|..+++.|++|..+|||||+++++|||||++++||+++... . .++|.++
T Consensus 235 -~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkas 313 (819)
T TIGR01970 235 -SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQAS 313 (819)
T ss_pred -CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHH
Confidence 012388999999999999999999999999999999999999999999999976421 1 3689999
Q ss_pred HHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhh
Q psy15878 303 YKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLF 382 (693)
Q Consensus 303 ~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~ 382 (693)
|.||+|||||.+ +|.||.++++. +...+. ....+.+. ...|...+|.+.+.|.. +..+ | .|+
T Consensus 314 a~QR~GRAGR~~---~G~cyrL~t~~-~~~~l~---~~~~PEI~----r~~L~~~~L~l~~~g~~-~~~~---~---~~l 375 (819)
T TIGR01970 314 ATQRAGRAGRLE---PGVCYRLWSEE-QHQRLP---AQDEPEIL----QADLSGLALELAQWGAK-DPSD---L---RWL 375 (819)
T ss_pred HHhhhhhcCCCC---CCEEEEeCCHH-HHHhhh---cCCCccee----ccCcHHHHHHHHHcCCC-Chhh---C---CCC
Confidence 999999999997 99999999877 433332 22222221 23567888888888753 2211 1 232
Q ss_pred hhccCchhhhhhhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhh
Q psy15878 383 YQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLL 449 (693)
Q Consensus 383 ~~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~ 449 (693)
.. +....+..+++.|...|+++.+ ..+|++|+.++.+|++|..+++++.+..
T Consensus 376 ~~----------P~~~~i~~a~~~L~~lgald~~-----~~lT~~G~~~~~lp~~p~l~~~ll~~~~ 427 (819)
T TIGR01970 376 DA----------PPSVALAAARQLLQRLGALDAQ-----GRLTAHGKAMAALGCHPRLAAMLLSAHS 427 (819)
T ss_pred CC----------cCHHHHHHHHHHHHHCCCCCCC-----CCcCHHHHHHHhcCCCHHHHHHHHHhhh
Confidence 22 2334578899999999999854 3589999999999999999999998644
No 17
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.2e-33 Score=321.75 Aligned_cols=352 Identities=16% Similarity=0.151 Sum_probs=238.6
Q ss_pred hhhHHHHHH-HHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccC-C
Q psy15878 2 VHEKYQSLA-KAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLN-E 79 (693)
Q Consensus 2 ~~e~~~~l~-~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~-d 79 (693)
|.|..+.+. .++...|..|+...++.... -.+.+|+|+||+++..+ +.....++++++|||||+|..+ +
T Consensus 61 A~qia~rva~~l~~~~g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~---l~~d~~L~~v~~IIlDEaHER~l~ 131 (812)
T PRK11664 61 ARNVAQRLAEQLGEKPGETVGYRMRAESKV------GPNTRLEVVTEGILTRM---IQRDPELSGVGLVILDEFHERSLQ 131 (812)
T ss_pred HHHHHHHHHHHhCcccCceEEEEecCcccc------CCCCcEEEEChhHHHHH---HhhCCCcCcCcEEEEcCCCccccc
Confidence 556666663 34455666666555442211 14568999999996443 3345678999999999999632 2
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcC-CCccCCCCcccceeeEEeCceeeeecCCCCchhhhcc
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEG-ITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYAD 158 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (693)
.+. .+..+...+...+++.|+|+||||+++ +.++++++. ..+....+..+++.++. ..+.....
T Consensus 132 ~Dl--~L~ll~~i~~~lr~~lqlilmSATl~~-~~l~~~~~~~~~I~~~gr~~pV~~~y~------~~~~~~~~------ 196 (812)
T PRK11664 132 ADL--ALALLLDVQQGLRDDLKLLIMSATLDN-DRLQQLLPDAPVIVSEGRSFPVERRYQ------PLPAHQRF------ 196 (812)
T ss_pred cch--HHHHHHHHHHhCCccceEEEEecCCCH-HHHHHhcCCCCEEEecCccccceEEec------cCchhhhH------
Confidence 111 122222222334678999999999964 567887753 33333334333332211 00000000
Q ss_pred cccccCCCCChhhHHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHH
Q psy15878 159 NLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEEC 237 (693)
Q Consensus 159 ~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~ 237 (693)
.......+..++. ..+++|||||++++++.+++.|.+ .. +
T Consensus 197 ------~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~--~~-~------------------------------ 237 (812)
T PRK11664 197 ------DEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLAS--RV-A------------------------------ 237 (812)
T ss_pred ------HHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHH--hc-c------------------------------
Confidence 0000112344444 578999999999999999999976 11 0
Q ss_pred HhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcC---------CC-----ccCCHHHH
Q psy15878 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV---------GR-----DFISLNMY 303 (693)
Q Consensus 238 ~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~---------g~-----~~~s~~~~ 303 (693)
....+..+||+|+.++|..+++.|++|..+|||||+++++|||||++++||+++.. |. .++|.++|
T Consensus 238 ~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa 317 (812)
T PRK11664 238 SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASM 317 (812)
T ss_pred CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhh
Confidence 00238889999999999999999999999999999999999999999999997542 11 25899999
Q ss_pred HHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhh
Q psy15878 304 KQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFY 383 (693)
Q Consensus 304 ~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~ 383 (693)
.||+|||||.+ +|.||.++++. + +..+.....|.+. ...|...+|.+.+.|.. +..+ ..|+.
T Consensus 318 ~QR~GRaGR~~---~G~cyrL~t~~-~---~~~l~~~~~PEI~----r~dL~~~~L~l~~~g~~-~~~~------~~~ld 379 (812)
T PRK11664 318 TQRAGRAGRLE---PGICLHLYSKE-Q---AERAAAQSEPEIL----HSDLSGLLLELLQWGCH-DPAQ------LSWLD 379 (812)
T ss_pred hhhccccCCCC---CcEEEEecCHH-H---HhhCccCCCCcee----ccchHHHHHHHHHcCCC-CHHh------CCCCC
Confidence 99999999997 99999999877 3 3333322222221 34678889998888853 2221 12332
Q ss_pred hccCchhhhhhhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhh
Q psy15878 384 QLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLL 449 (693)
Q Consensus 384 ~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~ 449 (693)
. +....++.+++.|...|+++.+ ..+|++|+.++.+|++|..+++++.+..
T Consensus 380 ~----------P~~~~~~~A~~~L~~lgald~~-----g~lT~~G~~m~~lp~~Prla~~ll~a~~ 430 (812)
T PRK11664 380 Q----------PPAAALAAAKRLLQQLGALDGQ-----GRLTARGRKMAALGNDPRLAAMLVAAKE 430 (812)
T ss_pred C----------CCHHHHHHHHHHHHHCCCCCCC-----CCcCHHHHHHHhcCCchHHHHHHHHHHh
Confidence 2 2345688999999999999853 4699999999999999999999998654
No 18
>KOG0331|consensus
Probab=100.00 E-value=9.3e-34 Score=302.21 Aligned_cols=269 Identities=17% Similarity=0.254 Sum_probs=209.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|..+.+.+++..++++..+++||....++.....+..+|+|+||+++..++.. +.-.+.++.++|+|||+.+.|.
T Consensus 177 LA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~--g~~~l~~v~ylVLDEADrMldm 254 (519)
T KOG0331|consen 177 LAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE--GSLNLSRVTYLVLDEADRMLDM 254 (519)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc--CCccccceeEEEeccHHhhhcc
Confidence 68999999999999999999999999988888887778899999999998766665 4556789999999999999999
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH-hhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST-FIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYAD 158 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~-~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (693)
++.+.++.|+.++. ++..|.++.|||.|. ...++. |++ +++.+.+... .... ..... +.+
T Consensus 255 GFe~qI~~Il~~i~--~~~rQtlm~saTwp~~v~~lA~~fl~------~~~~i~ig~~-----~~~~--a~~~i---~qi 316 (519)
T KOG0331|consen 255 GFEPQIRKILSQIP--RPDRQTLMFSATWPKEVRQLAEDFLN------NPIQINVGNK-----KELK--ANHNI---RQI 316 (519)
T ss_pred ccHHHHHHHHHhcC--CCcccEEEEeeeccHHHHHHHHHHhc------CceEEEecch-----hhhh--hhcch---hhh
Confidence 99999999999873 244489999999984 666664 333 1111111000 0000 00000 000
Q ss_pred cccccCCCCChhhHHHHHh-----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchH
Q psy15878 159 NLDYSLTGSGPDAVLHLVQ-----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTN 233 (693)
Q Consensus 159 ~~~~~~~~~~~~~l~~l~~-----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (693)
... .....+...+..++. .++++||||+|++.|+.++..+...+
T Consensus 317 ve~-~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~------------------------------ 365 (519)
T KOG0331|consen 317 VEV-CDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKG------------------------------ 365 (519)
T ss_pred hhh-cCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcC------------------------------
Confidence 000 001223334444444 67799999999999999999998722
Q ss_pred HHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCC
Q psy15878 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRT 313 (693)
Q Consensus 234 L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~ 313 (693)
+++..+||+.++.+|..+++.|++|...|||||+++++|+|+|++++||++++ |-++.+|+||+||+||.
T Consensus 366 ------~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydf----P~~vEdYVHRiGRTGRa 435 (519)
T KOG0331|consen 366 ------WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDF----PNNVEDYVHRIGRTGRA 435 (519)
T ss_pred ------cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCC----CCCHHHHHhhcCccccC
Confidence 34889999999999999999999999999999999999999999999999997 78999999999999998
Q ss_pred CCCCCCcEEEEecccccHHH
Q psy15878 314 GLQESGESIMLCKTMQDFLR 333 (693)
Q Consensus 314 g~d~~G~~i~l~~~~~~~~~ 333 (693)
| ..|.++.|++.. +...
T Consensus 436 ~--~~G~A~tfft~~-~~~~ 452 (519)
T KOG0331|consen 436 G--KKGTAITFFTSD-NAKL 452 (519)
T ss_pred C--CCceEEEEEeHH-HHHH
Confidence 8 789999999887 4433
No 19
>KOG0330|consensus
Probab=100.00 E-value=6.5e-34 Score=284.49 Aligned_cols=273 Identities=18% Similarity=0.256 Sum_probs=214.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||+|+.+.|..++..+|++|..+.||++...+.....+++||+||||+++...+..- .-..++.++++|+|||+.+.|.
T Consensus 141 LA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T-kgf~le~lk~LVlDEADrlLd~ 219 (476)
T KOG0330|consen 141 LAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT-KGFSLEQLKFLVLDEADRLLDM 219 (476)
T ss_pred HHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc-cCccHHHhHHHhhchHHhhhhh
Confidence 689999999999999999999999999876666666689999999999965443311 2235699999999999999999
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNL 160 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (693)
+|+..++.|+..+ +...|.+++|||++. .+.+...+. -..|+.+...- .|..-+. + ...+
T Consensus 220 dF~~~ld~ILk~i---p~erqt~LfsATMt~--kv~kL~ras----l~~p~~v~~s~-----ky~tv~~--l----kQ~y 279 (476)
T KOG0330|consen 220 DFEEELDYILKVI---PRERQTFLFSATMTK--KVRKLQRAS----LDNPVKVAVSS-----KYQTVDH--L----KQTY 279 (476)
T ss_pred hhHHHHHHHHHhc---CccceEEEEEeecch--hhHHHHhhc----cCCCeEEeccc-----hhcchHH--h----hhhe
Confidence 9999999999876 578899999999984 333333221 12232221100 0000000 0 0001
Q ss_pred cccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHH
Q psy15878 161 DYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECI 238 (693)
Q Consensus 161 ~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~ 238 (693)
.+-+...+...++.+++ .+.++||||+|...+..++-.|...++.
T Consensus 280 lfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~--------------------------------- 326 (476)
T KOG0330|consen 280 LFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQ--------------------------------- 326 (476)
T ss_pred EeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcc---------------------------------
Confidence 11124455667888888 7899999999999999999998874433
Q ss_pred hhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCC
Q psy15878 239 LYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQES 318 (693)
Q Consensus 239 ~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~ 318 (693)
...+||.|++..|.-.++.|++|...|||||+++++|+|+|.+++||+++. |.+..+|+||+||+||.| .+
T Consensus 327 ---a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDi----P~~skDYIHRvGRtaRaG--rs 397 (476)
T KOG0330|consen 327 ---AIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDI----PTHSKDYIHRVGRTARAG--RS 397 (476)
T ss_pred ---eecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCC----CCcHHHHHHHcccccccC--CC
Confidence 677999999999999999999999999999999999999999999999997 889999999999999999 79
Q ss_pred CcEEEEecccccHHHHHHH
Q psy15878 319 GESIMLCKTMQDFLRFSSM 337 (693)
Q Consensus 319 G~~i~l~~~~~~~~~~~~~ 337 (693)
|.++.+++.- |.+.+.++
T Consensus 398 G~~ItlVtqy-Dve~~qrI 415 (476)
T KOG0330|consen 398 GKAITLVTQY-DVELVQRI 415 (476)
T ss_pred cceEEEEehh-hhHHHHHH
Confidence 9999999986 88877654
No 20
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5e-33 Score=312.09 Aligned_cols=269 Identities=17% Similarity=0.205 Sum_probs=202.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|+.+.+++++...++++..++|+.....+.......++|+|+||+++..++.+ ....++++++||+||||.+.+.
T Consensus 215 La~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~--~~~~l~~v~~lViDEAd~mld~ 292 (545)
T PTZ00110 215 LAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES--NVTNLRRVTYLVLDEADRMLDM 292 (545)
T ss_pred HHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc--CCCChhhCcEEEeehHHhhhhc
Confidence 68899999999998889999998888654444444446799999999998766654 3356789999999999999998
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHhhcCC-CccCCCCcccceeeEEeCceeeeecCCCCchhhhcc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTFIEGI-TYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYAD 158 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~l~~~-~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (693)
.+...+..++..+ .++.|++++|||++. ...++.++-.. ........+.+.....+.+.++.+.
T Consensus 293 gf~~~i~~il~~~---~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~----------- 358 (545)
T PTZ00110 293 GFEPQIRKIVSQI---RPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE----------- 358 (545)
T ss_pred chHHHHHHHHHhC---CCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe-----------
Confidence 8888888887765 477899999999985 55566554321 1000000000000000000011100
Q ss_pred cccccCCCCChhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHH
Q psy15878 159 NLDYSLTGSGPDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNL 234 (693)
Q Consensus 159 ~~~~~~~~~~~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 234 (693)
...+...+..++. .+.++||||+|++.|+.++..|...++.
T Consensus 359 ------~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~----------------------------- 403 (545)
T PTZ00110 359 ------EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWP----------------------------- 403 (545)
T ss_pred ------chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCc-----------------------------
Confidence 1122233444443 5789999999999999999999763332
Q ss_pred HHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCC
Q psy15878 235 EECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTG 314 (693)
Q Consensus 235 ~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g 314 (693)
+..+||++++++|..+++.|++|.++|||||+++++|||+|++++||++++ |.+..+|.||+||+||.|
T Consensus 404 -------~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~----P~s~~~yvqRiGRtGR~G 472 (545)
T PTZ00110 404 -------ALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDF----PNQIEDYVHRIGRTGRAG 472 (545)
T ss_pred -------EEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCC----CCCHHHHHHHhcccccCC
Confidence 788999999999999999999999999999999999999999999999986 779999999999999999
Q ss_pred CCCCCcEEEEecccccHHHH
Q psy15878 315 LQESGESIMLCKTMQDFLRF 334 (693)
Q Consensus 315 ~d~~G~~i~l~~~~~~~~~~ 334 (693)
..|.|+.++++. +....
T Consensus 473 --~~G~ai~~~~~~-~~~~~ 489 (545)
T PTZ00110 473 --AKGASYTFLTPD-KYRLA 489 (545)
T ss_pred --CCceEEEEECcc-hHHHH
Confidence 689999999887 55443
No 21
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.3e-32 Score=307.99 Aligned_cols=269 Identities=17% Similarity=0.233 Sum_probs=199.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|..+.++.+++.+++++..+.||.....+......+++|+|+||+++..++.+ ....++++++||+||||.+.+.
T Consensus 208 La~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~--~~~~l~~v~~lViDEad~ml~~ 285 (518)
T PLN00206 208 LCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK--HDIELDNVSVLVLDEVDCMLER 285 (518)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc--CCccchheeEEEeecHHHHhhc
Confidence 67888888999988889998888887654444444446799999999998777655 3456799999999999999988
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHhhcCCCcc-CCCCcccceeeEEeCceeeeecCCCCchhhhcc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTFIEGITYV-ENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYAD 158 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~l~~~~~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (693)
++...+..++..+ +++|++++|||+++ .+.++.++...... ....+......+ ......+
T Consensus 286 gf~~~i~~i~~~l----~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v--~q~~~~~------------ 347 (518)
T PLN00206 286 GFRDQVMQIFQAL----SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAV--KQLAIWV------------ 347 (518)
T ss_pred chHHHHHHHHHhC----CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcce--eEEEEec------------
Confidence 8877777666554 56799999999986 56677766543211 000000000000 0000000
Q ss_pred cccccCCCCChhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHH
Q psy15878 159 NLDYSLTGSGPDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNL 234 (693)
Q Consensus 159 ~~~~~~~~~~~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 234 (693)
....+...+.+++. ...++||||+|+..|+.++..|... .
T Consensus 348 -----~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~--~----------------------------- 391 (518)
T PLN00206 348 -----ETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV--T----------------------------- 391 (518)
T ss_pred -----cchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc--c-----------------------------
Confidence 01112234445554 3468999999999999999888651 1
Q ss_pred HHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCC
Q psy15878 235 EECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTG 314 (693)
Q Consensus 235 ~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g 314 (693)
...+..+||+++.++|..+++.|++|.++|||||+++++|||+|++++||+++. |.+..+|+||+|||||.|
T Consensus 392 ----g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~----P~s~~~yihRiGRaGR~g 463 (518)
T PLN00206 392 ----GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDM----PNTIKEYIHQIGRASRMG 463 (518)
T ss_pred ----CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCC----CCCHHHHHHhccccccCC
Confidence 023888999999999999999999999999999999999999999999999985 789999999999999999
Q ss_pred CCCCCcEEEEecccccHHHHHH
Q psy15878 315 LQESGESIMLCKTMQDFLRFSS 336 (693)
Q Consensus 315 ~d~~G~~i~l~~~~~~~~~~~~ 336 (693)
..|.+++++++. +...+..
T Consensus 464 --~~G~ai~f~~~~-~~~~~~~ 482 (518)
T PLN00206 464 --EKGTAIVFVNEE-DRNLFPE 482 (518)
T ss_pred --CCeEEEEEEchh-HHHHHHH
Confidence 689999999887 5544433
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.2e-32 Score=305.77 Aligned_cols=263 Identities=17% Similarity=0.225 Sum_probs=201.4
Q ss_pred ChhhHHHHHHHHhhhh-CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEF-KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
||.|..++++.++... ++++..++|+.+...+......+++|+|+||+++..++++ ....++++++||+||+|.+.+
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~--~~~~l~~l~~lViDEad~~l~ 161 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK--GTLDLDALNTLVLDEADRMLD 161 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc--CCccHHHCCEEEEECHHHHhC
Confidence 6788899999887655 7899999998765444444447899999999998776654 334578999999999999998
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHhh-cCCCcc---CCCCcccceeeEEeCceeeeecCCCCchh
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTFI-EGITYV---ENSRPTKHSEYVTVDKRVFQSFDGKSLTE 154 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~l-~~~~~~---~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 154 (693)
.++...++.++..+ +...|++++|||+++ ...++..+ +.+... .......+. ...+...
T Consensus 162 ~g~~~~l~~i~~~~---~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~------~~~~~~~------- 225 (460)
T PRK11776 162 MGFQDAIDAIIRQA---PARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIE------QRFYEVS------- 225 (460)
T ss_pred cCcHHHHHHHHHhC---CcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCee------EEEEEeC-------
Confidence 88888888877665 567899999999985 44555443 221100 000000000 1111111
Q ss_pred hhcccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccch
Q psy15878 155 IYADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLST 232 (693)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 232 (693)
...+.+.+..++. ...++||||+|++.|+.+++.|...+.
T Consensus 226 ----------~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~---------------------------- 267 (460)
T PRK11776 226 ----------PDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGF---------------------------- 267 (460)
T ss_pred ----------cHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCC----------------------------
Confidence 1123445566665 667899999999999999999987332
Q ss_pred HHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCC
Q psy15878 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGR 312 (693)
Q Consensus 233 ~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR 312 (693)
.+.++||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++||+++. |.+..+|.||+||+||
T Consensus 268 --------~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~----p~~~~~yiqR~GRtGR 335 (460)
T PRK11776 268 --------SALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYEL----ARDPEVHVHRIGRTGR 335 (460)
T ss_pred --------cEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecC----CCCHhHhhhhcccccC
Confidence 3899999999999999999999999999999999999999999999999986 7789999999999999
Q ss_pred CCCCCCCcEEEEecccccHHHH
Q psy15878 313 TGLQESGESIMLCKTMQDFLRF 334 (693)
Q Consensus 313 ~g~d~~G~~i~l~~~~~~~~~~ 334 (693)
.| ..|.++.++.+. +...+
T Consensus 336 ~g--~~G~ai~l~~~~-e~~~~ 354 (460)
T PRK11776 336 AG--SKGLALSLVAPE-EMQRA 354 (460)
T ss_pred CC--CcceEEEEEchh-HHHHH
Confidence 99 689999999887 55443
No 23
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.4e-32 Score=303.96 Aligned_cols=266 Identities=17% Similarity=0.196 Sum_probs=200.6
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|.++.++.++..+++++..++|+.+..++.......++|+|+||+++..++.. ....++++++|||||||++.+.
T Consensus 87 La~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~--~~~~l~~v~~lViDEah~ll~~ 164 (456)
T PRK10590 87 LAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ--NAVKLDQVEILVLDEADRMLDM 164 (456)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc--CCcccccceEEEeecHHHHhcc
Confidence 68899999999998899999999988765444444447899999999998665543 3345799999999999999988
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHhhcCCCc-c-CCCCcccceeeEEeCceeeeecCCCCchhhhc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTFIEGITY-V-ENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYA 157 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~l~~~~~-~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (693)
.+...+..++..+ +...|++++|||+++ ...++.++..... . ...+..... .+ ...+..
T Consensus 165 ~~~~~i~~il~~l---~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~-~i--~~~~~~------------ 226 (456)
T PRK10590 165 GFIHDIRRVLAKL---PAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASE-QV--TQHVHF------------ 226 (456)
T ss_pred ccHHHHHHHHHhC---CccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccccccc-ce--eEEEEE------------
Confidence 8887777776654 567899999999986 5666665533211 0 000000000 00 000000
Q ss_pred ccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHH
Q psy15878 158 DNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLE 235 (693)
Q Consensus 158 ~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 235 (693)
.....+.+.+..++. ...++||||+++..|+.++..|.+.++
T Consensus 227 -----~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~------------------------------- 270 (456)
T PRK10590 227 -----VDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGI------------------------------- 270 (456)
T ss_pred -----cCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCC-------------------------------
Confidence 001112233444454 557999999999999999999977332
Q ss_pred HHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCC
Q psy15878 236 ECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGL 315 (693)
Q Consensus 236 ~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~ 315 (693)
.+..+||++++++|..+++.|++|.++|||||+++++|||+|++++||+++. |.+..+|+||+|||||.|
T Consensus 271 -----~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~----P~~~~~yvqR~GRaGR~g- 340 (456)
T PRK10590 271 -----RSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYEL----PNVPEDYVHRIGRTGRAA- 340 (456)
T ss_pred -----CEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCC----CCCHHHhhhhccccccCC-
Confidence 2889999999999999999999999999999999999999999999999985 779999999999999999
Q ss_pred CCCCcEEEEecccccHHHH
Q psy15878 316 QESGESIMLCKTMQDFLRF 334 (693)
Q Consensus 316 d~~G~~i~l~~~~~~~~~~ 334 (693)
..|.++.++... +...+
T Consensus 341 -~~G~ai~l~~~~-d~~~~ 357 (456)
T PRK10590 341 -ATGEALSLVCVD-EHKLL 357 (456)
T ss_pred -CCeeEEEEecHH-HHHHH
Confidence 689999998876 54443
No 24
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.1e-32 Score=318.04 Aligned_cols=324 Identities=19% Similarity=0.195 Sum_probs=224.4
Q ss_pred CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc-cCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHH
Q psy15878 38 NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM-LNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALS 116 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~-l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la 116 (693)
.+++|+|+||+++. +.+.....+.++++|||||||. ..+.++ .+ .++.++....++.|+|+||||+ +.+.++
T Consensus 162 ~~t~I~v~TpG~LL---~~l~~d~~Ls~~~~IIIDEAHERsLn~Df--LL-g~Lk~lL~~rpdlKvILmSATi-d~e~fs 234 (1294)
T PRK11131 162 DNTMVKLMTDGILL---AEIQQDRLLMQYDTIIIDEAHERSLNIDF--IL-GYLKELLPRRPDLKVIITSATI-DPERFS 234 (1294)
T ss_pred CCCCEEEEChHHHH---HHHhcCCccccCcEEEecCccccccccch--HH-HHHHHhhhcCCCceEEEeeCCC-CHHHHH
Confidence 57899999999954 4444556789999999999994 444332 22 2344443334678999999999 567888
Q ss_pred HhhcC-CCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHH-------Hh-cCCceEEEeC
Q psy15878 117 TFIEG-ITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHL-------VQ-GNLMVLIFCS 187 (693)
Q Consensus 117 ~~l~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~~-~~~~vLVF~~ 187 (693)
++++. +.+....+..++..++. ...... ...+.+.+..+ .. ..+++|||||
T Consensus 235 ~~F~~apvI~V~Gr~~pVei~y~------p~~~~~--------------~~~~~d~l~~ll~~V~~l~~~~~GdILVFLp 294 (1294)
T PRK11131 235 RHFNNAPIIEVSGRTYPVEVRYR------PIVEEA--------------DDTERDQLQAIFDAVDELGREGPGDILIFMS 294 (1294)
T ss_pred HHcCCCCEEEEcCccccceEEEe------eccccc--------------chhhHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 87753 22222223222221110 000000 00011222222 22 5689999999
Q ss_pred ChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCe
Q psy15878 188 SKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQ 267 (693)
Q Consensus 188 sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~ 267 (693)
++.+++.+++.|.+.+.. ...|..+||+|+.++|..+++. .|..+
T Consensus 295 g~~EIe~lae~L~~~~~~---------------------------------~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rk 339 (1294)
T PRK11131 295 GEREIRDTADALNKLNLR---------------------------------HTEILPLYARLSNSEQNRVFQS--HSGRR 339 (1294)
T ss_pred CHHHHHHHHHHHHhcCCC---------------------------------cceEeecccCCCHHHHHHHhcc--cCCee
Confidence 999999999999863211 0227889999999999999886 58899
Q ss_pred EEEecchhhcccCCCCcEEEEecCc---------CC-----CccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHH
Q psy15878 268 IICCTSTLAAGVNLPAQRVIIRDSY---------VG-----RDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR 333 (693)
Q Consensus 268 VLvaT~~l~~Gvnlp~~~vVI~~~~---------~g-----~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~ 333 (693)
|||||+++++|||+|++++||++++ .| ..|+|.++|.||+|||||.+ +|.||.++++. +...
T Consensus 340 IIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~-d~~~ 415 (1294)
T PRK11131 340 IVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSED-DFLS 415 (1294)
T ss_pred EEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHH-HHHh
Confidence 9999999999999999999999752 11 24689999999999999997 99999999876 4332
Q ss_pred HHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhhhhhhhHHHHHHHHHhhcCCe
Q psy15878 334 FSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTM 413 (693)
Q Consensus 334 ~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i 413 (693)
...+ ..+|.. ..+|...+|.+.+.|... +..| .|+.. +....+..+++.|.+.|+|
T Consensus 416 ~~~~--~~PEIl-----R~~L~~viL~lk~lgl~d----i~~F---~fldp----------P~~~~i~~al~~L~~LgAl 471 (1294)
T PRK11131 416 RPEF--TDPEIL-----RTNLASVILQMTALGLGD----IAAF---PFVEA----------PDKRNIQDGVRLLEELGAI 471 (1294)
T ss_pred hhcc--cCCccc-----cCCHHHHHHHHHHcCCCC----ccee---eCCCC----------CCHHHHHHHHHHHHHCCCC
Confidence 2221 222222 346788899988877532 2222 23322 2345688999999999999
Q ss_pred EeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhh
Q psy15878 414 LTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHN 451 (693)
Q Consensus 414 ~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~ 451 (693)
+.+++++...+|++|+.++++|++|..+++++.+....
T Consensus 472 d~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~ 509 (1294)
T PRK11131 472 TTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHG 509 (1294)
T ss_pred CccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcC
Confidence 86543345789999999999999999999999876543
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.3e-32 Score=299.31 Aligned_cols=269 Identities=14% Similarity=0.204 Sum_probs=202.5
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|.++.+..++...++++..++|+...........++++|+|+||+++..++.. ....++++++||+||||.+.+.
T Consensus 85 La~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~--~~~~~~~v~~lViDEah~~l~~ 162 (434)
T PRK11192 85 LAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE--ENFDCRAVETLILDEADRMLDM 162 (434)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--CCcCcccCCEEEEECHHHHhCC
Confidence 67889999999999999999999998765444444446789999999997655543 2234689999999999999998
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN--INALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYAD 158 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (693)
+++..++.+...+ ....|+++||||++. ..++..++..........+.... .-.+....+...
T Consensus 163 ~~~~~~~~i~~~~---~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~~~~~~~~----------- 227 (434)
T PRK11192 163 GFAQDIETIAAET---RWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRE-RKKIHQWYYRAD----------- 227 (434)
T ss_pred CcHHHHHHHHHhC---ccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCccc-ccCceEEEEEeC-----------
Confidence 8998888877654 356799999999974 66777776432111110010000 000000000000
Q ss_pred cccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHH
Q psy15878 159 NLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEE 236 (693)
Q Consensus 159 ~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 236 (693)
....+.+.+..++. ...++||||+++..|+.++..|...+.
T Consensus 228 -----~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~-------------------------------- 270 (434)
T PRK11192 228 -----DLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGI-------------------------------- 270 (434)
T ss_pred -----CHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCC--------------------------------
Confidence 01123344555555 568999999999999999999987322
Q ss_pred HHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCC
Q psy15878 237 CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQ 316 (693)
Q Consensus 237 ~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d 316 (693)
.+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++. |.+...|+||+||+||.|
T Consensus 271 ----~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~----p~s~~~yiqr~GR~gR~g-- 340 (434)
T PRK11192 271 ----NCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDM----PRSADTYLHRIGRTGRAG-- 340 (434)
T ss_pred ----CEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECC----CCCHHHHhhcccccccCC--
Confidence 3899999999999999999999999999999999999999999999999875 789999999999999998
Q ss_pred CCCcEEEEecccccHHHH
Q psy15878 317 ESGESIMLCKTMQDFLRF 334 (693)
Q Consensus 317 ~~G~~i~l~~~~~~~~~~ 334 (693)
..|.++.++... +...+
T Consensus 341 ~~g~ai~l~~~~-d~~~~ 357 (434)
T PRK11192 341 RKGTAISLVEAH-DHLLL 357 (434)
T ss_pred CCceEEEEecHH-HHHHH
Confidence 689999999776 54443
No 26
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-32 Score=300.74 Aligned_cols=269 Identities=20% Similarity=0.208 Sum_probs=199.0
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|.++.+..++...++++..++|+.+...+......+++|+|+||+++..++++ ..-.+.++++||+||||++.+.
T Consensus 95 La~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~v~~lViDEad~l~~~ 172 (423)
T PRK04837 95 LAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ--NHINLGAIQVVVLDEADRMFDL 172 (423)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccccEEEEecHHHHhhc
Confidence 68899999999999999999999988654333334446789999999998766654 3345789999999999999988
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHH-HhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALS-TFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYAD 158 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la-~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (693)
++...+..++..+.. ....+.+++|||++. ...+. .++..+.+............+ ....
T Consensus 173 ~f~~~i~~i~~~~~~-~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i--~~~~--------------- 234 (423)
T PRK04837 173 GFIKDIRWLFRRMPP-ANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRI--KEEL--------------- 234 (423)
T ss_pred ccHHHHHHHHHhCCC-ccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCce--eEEE---------------
Confidence 888888877766531 134578999999975 33333 333322111000000000000 0000
Q ss_pred cccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHH
Q psy15878 159 NLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEE 236 (693)
Q Consensus 159 ~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 236 (693)
.+.....+...+..++. ...++||||+++..|+.++..|...++
T Consensus 235 --~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~-------------------------------- 280 (423)
T PRK04837 235 --FYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGH-------------------------------- 280 (423)
T ss_pred --EeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCC--------------------------------
Confidence 01111122344555555 568999999999999999999987332
Q ss_pred HHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCC
Q psy15878 237 CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQ 316 (693)
Q Consensus 237 ~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d 316 (693)
.+.++||+|++++|..+++.|++|+++|||||+++++|||+|++++||+++. |.+..+|.||+||+||.|
T Consensus 281 ----~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~----P~s~~~yiqR~GR~gR~G-- 350 (423)
T PRK04837 281 ----RVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDL----PDDCEDYVHRIGRTGRAG-- 350 (423)
T ss_pred ----cEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCC----CCchhheEeccccccCCC--
Confidence 3999999999999999999999999999999999999999999999999986 779999999999999999
Q ss_pred CCCcEEEEecccccHHHH
Q psy15878 317 ESGESIMLCKTMQDFLRF 334 (693)
Q Consensus 317 ~~G~~i~l~~~~~~~~~~ 334 (693)
..|.++.|+.+. +...+
T Consensus 351 ~~G~ai~~~~~~-~~~~~ 367 (423)
T PRK04837 351 ASGHSISLACEE-YALNL 367 (423)
T ss_pred CCeeEEEEeCHH-HHHHH
Confidence 689999999887 54444
No 27
>KOG0922|consensus
Probab=100.00 E-value=3.1e-32 Score=291.45 Aligned_cols=355 Identities=17% Similarity=0.173 Sum_probs=262.7
Q ss_pred HHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHH
Q psy15878 10 AKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECV 89 (693)
Q Consensus 10 ~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~i 89 (693)
++.+.+.|-+++.-.|..-+++.... ....|.+.|.+. |+|+.+.++.+.++++||+||||... -....+-.+
T Consensus 113 ~RVAeE~~~~lG~~VGY~IRFed~ts--~~TrikymTDG~---LLRE~l~Dp~LskYsvIIlDEAHERs--l~TDiLlGl 185 (674)
T KOG0922|consen 113 KRVAEEMGCQLGEEVGYTIRFEDSTS--KDTRIKYMTDGM---LLREILKDPLLSKYSVIILDEAHERS--LHTDILLGL 185 (674)
T ss_pred HHHHHHhCCCcCceeeeEEEecccCC--CceeEEEecchH---HHHHHhcCCccccccEEEEechhhhh--hHHHHHHHH
Confidence 34555666666655565444443332 568899999997 68999999999999999999999543 345566667
Q ss_pred HHHHhccCCCceEEEEcCcCCCHHHHHHhhcC-CCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCC
Q psy15878 90 VSKVLYLKKSIQIFAMSATIGNINALSTFIEG-ITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSG 168 (693)
Q Consensus 90 l~~l~~~~~~~qii~lSATl~n~~~la~~l~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (693)
+.++...+++.++|.||||+ |++.|++|++. +.+....|..|++..... .+..++ ....
T Consensus 186 LKki~~~R~~LklIimSATl-da~kfS~yF~~a~i~~i~GR~fPVei~y~~-------~p~~dY------------v~a~ 245 (674)
T KOG0922|consen 186 LKKILKKRPDLKLIIMSATL-DAEKFSEYFNNAPILTIPGRTFPVEILYLK-------EPTADY------------VDAA 245 (674)
T ss_pred HHHHHhcCCCceEEEEeeee-cHHHHHHHhcCCceEeecCCCCceeEEecc-------CCchhh------------HHHH
Confidence 77776667889999999999 78999999876 667777777776643321 000000 0011
Q ss_pred hhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEc
Q psy15878 169 PDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHH 246 (693)
Q Consensus 169 ~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h 246 (693)
...+.++.. +.+.+|||.++.++++.+++.|.+ .. ..+.+..+.-+.+.|
T Consensus 246 ~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e--~~--------------------------~~~~~~~~~~~lply 297 (674)
T KOG0922|consen 246 LITVIQIHLTEPPGDILVFLTGQEEIEAACELLRE--RA--------------------------KSLPEDCPELILPLY 297 (674)
T ss_pred HHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHH--Hh--------------------------hhccccCcceeeeec
Confidence 122333333 788999999999999999999987 21 001111111267899
Q ss_pred CCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCc---------CCC-----ccCCHHHHHHHhhccCC
Q psy15878 247 ADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY---------VGR-----DFISLNMYKQMVGRAGR 312 (693)
Q Consensus 247 ~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~---------~g~-----~~~s~~~~~Qr~GRaGR 312 (693)
|+|+.+++..|++....|..||++||++++.+++||.+.+||+.++ .|. .|+|.++..||.|||||
T Consensus 298 ~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGR 377 (674)
T KOG0922|consen 298 GALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGR 377 (674)
T ss_pred ccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCC
Confidence 9999999999999999999999999999999999999999999754 222 37899999999999999
Q ss_pred CCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhh
Q psy15878 313 TGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQ 392 (693)
Q Consensus 313 ~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~ 392 (693)
.| +|.||.++++. .|.++.....|.+.- .+|...+|.+.+.|.- +.+.+.|+..
T Consensus 378 t~---pGkcyRLYte~----~~~~~~~~~~PEI~R----~~Ls~~vL~Lkalgi~-------d~l~F~f~d~-------- 431 (674)
T KOG0922|consen 378 TG---PGKCYRLYTES----AYDKMPLQTVPEIQR----VNLSSAVLQLKALGIN-------DPLRFPFIDP-------- 431 (674)
T ss_pred CC---CceEEEeeeHH----HHhhcccCCCCceee----echHHHHHHHHhcCCC-------CcccCCCCCC--------
Confidence 99 99999999887 345665555543322 4788999999998854 3444555544
Q ss_pred hhhhhhHHHHHHHHHhhcCCeEeeccCccEEecH-HHHHHHHcCCChhHHHHHHHhhhhhh
Q psy15878 393 TFLETTLSEIVASLLASKGTMLTMNEAGHLSLTS-IAKAAVQAGLSHDVCLIIYSDLLHNK 452 (693)
Q Consensus 393 ~~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~-lG~~~~~~~l~~~~~~~~~~~l~~~~ 452 (693)
+..+....+++.|...|+++.+ -.+|+ +|+.++.+|++|..+++++.+-.-..
T Consensus 432 --P~~~~l~~AL~~L~~lgald~~-----g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc 485 (674)
T KOG0922|consen 432 --PPPEALEEALEELYSLGALDDR-----GKLTSPLGRQMAELPLEPHLSKMLLKSSELGC 485 (674)
T ss_pred --CChHHHHHHHHHHHhcCcccCc-----CCcCchHHhhhhhcCCCcchhhhhhhccccCC
Confidence 3456678899999999999954 34665 99999999999999999988655443
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4e-32 Score=305.79 Aligned_cols=268 Identities=14% Similarity=0.187 Sum_probs=198.6
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|.++.+.+++..+++++..++|+.....+.....++++|+|+||+++..++... ....+..+++|||||+|++.+.
T Consensus 96 La~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~-~~~~l~~v~~lViDEAh~lld~ 174 (572)
T PRK04537 96 LAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH-KVVSLHACEICVLDEADRMFDL 174 (572)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc-cccchhheeeeEecCHHHHhhc
Confidence 688999999999999999999999987644333333357899999999986665431 1234688999999999999988
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHH-HHhhcCCC-ccCCCCcccceeeEEeCceeeeecCCCCchhhhc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INAL-STFIEGIT-YVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYA 157 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~l-a~~l~~~~-~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (693)
.+...++.++.++.. ....|++++|||+++ ...+ ..++.... +.......... .+...++.
T Consensus 175 gf~~~i~~il~~lp~-~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~---~i~q~~~~------------ 238 (572)
T PRK04537 175 GFIKDIRFLLRRMPE-RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAA---RVRQRIYF------------ 238 (572)
T ss_pred chHHHHHHHHHhccc-ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccccccc---ceeEEEEe------------
Confidence 888888888776632 125799999999985 2333 23443211 00000000000 00000000
Q ss_pred ccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHH
Q psy15878 158 DNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLE 235 (693)
Q Consensus 158 ~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 235 (693)
.....+...+..++. .+.++||||+|+..|+.+++.|.+.++
T Consensus 239 -----~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~------------------------------- 282 (572)
T PRK04537 239 -----PADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGY------------------------------- 282 (572)
T ss_pred -----cCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCC-------------------------------
Confidence 001122334555555 678999999999999999999987332
Q ss_pred HHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCC
Q psy15878 236 ECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGL 315 (693)
Q Consensus 236 ~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~ 315 (693)
.+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++. |.+..+|+||+||+||.|
T Consensus 283 -----~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~----P~s~~~yvqRiGRaGR~G- 352 (572)
T PRK04537 283 -----RVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDL----PFDAEDYVHRIGRTARLG- 352 (572)
T ss_pred -----CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCC----CCCHHHHhhhhcccccCC-
Confidence 3999999999999999999999999999999999999999999999999985 789999999999999999
Q ss_pred CCCCcEEEEecccccHHH
Q psy15878 316 QESGESIMLCKTMQDFLR 333 (693)
Q Consensus 316 d~~G~~i~l~~~~~~~~~ 333 (693)
..|.|++|+.+. +...
T Consensus 353 -~~G~ai~~~~~~-~~~~ 368 (572)
T PRK04537 353 -EEGDAISFACER-YAMS 368 (572)
T ss_pred -CCceEEEEecHH-HHHH
Confidence 689999999876 4433
No 29
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-32 Score=300.71 Aligned_cols=265 Identities=18% Similarity=0.235 Sum_probs=207.3
Q ss_pred ChhhHHHHHHHHhhhh-CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEF-KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
||.|.++.+.+++... ++++..++||.+...+......++||+|+||+++..++.. ..-.+..+.++|+|||+.+.|
T Consensus 111 LA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~--~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 111 LAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR--GKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc--CCcchhhcCEEEeccHhhhhc
Confidence 6899999999999988 7999999999886666655445699999999998766655 345679999999999999999
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceee--------EEeCceeeeecCCCC
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEY--------VTVDKRVFQSFDGKS 151 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~--------~~~~~~~~~~~~~~~ 151 (693)
.++...++.++..+ +.+.|++++|||+++ .+..|...-. . .|+.+... -.+.+.++.+..
T Consensus 189 ~Gf~~~i~~I~~~~---p~~~qtllfSAT~~~--~i~~l~~~~l--~--~p~~i~v~~~~~~~~~~~i~q~~~~v~~--- 256 (513)
T COG0513 189 MGFIDDIEKILKAL---PPDRQTLLFSATMPD--DIRELARRYL--N--DPVEIEVSVEKLERTLKKIKQFYLEVES--- 256 (513)
T ss_pred CCCHHHHHHHHHhC---CcccEEEEEecCCCH--HHHHHHHHHc--c--CCcEEEEccccccccccCceEEEEEeCC---
Confidence 99999999998876 458999999999986 2433332110 1 12211100 001111111110
Q ss_pred chhhhcccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCc
Q psy15878 152 LTEIYADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGK 229 (693)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (693)
...+...+..++. ...++||||+|+..|+.++..|...++.
T Consensus 257 -------------~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~------------------------ 299 (513)
T COG0513 257 -------------EEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFK------------------------ 299 (513)
T ss_pred -------------HHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCe------------------------
Confidence 1124556667776 5557999999999999999999884433
Q ss_pred cchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhc
Q psy15878 230 LSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGR 309 (693)
Q Consensus 230 ~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GR 309 (693)
+..+||+|++++|..+++.|++|..+|||||+++++|+|+|++.+||+++. |.+..+|+||+||
T Consensus 300 ------------~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~----p~~~e~yvHRiGR 363 (513)
T COG0513 300 ------------VAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDL----PLDPEDYVHRIGR 363 (513)
T ss_pred ------------EEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccC----CCCHHHheeccCc
Confidence 999999999999999999999999999999999999999999999999986 7899999999999
Q ss_pred cCCCCCCCCCcEEEEecccccHHHH
Q psy15878 310 AGRTGLQESGESIMLCKTMQDFLRF 334 (693)
Q Consensus 310 aGR~g~d~~G~~i~l~~~~~~~~~~ 334 (693)
+||.| ..|.++.|+.+..+...+
T Consensus 364 TgRaG--~~G~ai~fv~~~~e~~~l 386 (513)
T COG0513 364 TGRAG--RKGVAISFVTEEEEVKKL 386 (513)
T ss_pred cccCC--CCCeEEEEeCcHHHHHHH
Confidence 99999 799999999864244433
No 30
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.98 E-value=2.6e-31 Score=312.55 Aligned_cols=350 Identities=19% Similarity=0.159 Sum_probs=238.0
Q ss_pred HHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc-cCCCCChHHHHH
Q psy15878 10 AKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM-LNEPQRGPILEC 88 (693)
Q Consensus 10 ~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~-l~d~~rg~~le~ 88 (693)
.++++.+|.+++...|..-++.... -.++.|.++|++.+ ++.+..++.+.++++|||||+|. ..+.++ +..
T Consensus 129 ~RvA~elg~~lG~~VGY~vR~~~~~--s~~T~I~~~TdGiL---Lr~l~~d~~L~~~~~IIIDEaHERsL~~D~---LL~ 200 (1283)
T TIGR01967 129 QRIAEELGTPLGEKVGYKVRFHDQV--SSNTLVKLMTDGIL---LAETQQDRFLSRYDTIIIDEAHERSLNIDF---LLG 200 (1283)
T ss_pred HHHHHHhCCCcceEEeeEEcCCccc--CCCceeeeccccHH---HHHhhhCcccccCcEEEEcCcchhhccchh---HHH
Confidence 4556677887777777533332221 25689999999985 55555667889999999999994 333222 222
Q ss_pred HHHHHhccCCCceEEEEcCcCCCHHHHHHhhcC-CCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCC
Q psy15878 89 VVSKVLYLKKSIQIFAMSATIGNINALSTFIEG-ITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGS 167 (693)
Q Consensus 89 il~~l~~~~~~~qii~lSATl~n~~~la~~l~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (693)
++.++....++.|+|+||||+ +.+.++++++. +.+....+..|+..++. ......... ...
T Consensus 201 lLk~il~~rpdLKlIlmSATl-d~~~fa~~F~~apvI~V~Gr~~PVev~Y~------~~~~~~~~~-----------~~~ 262 (1283)
T TIGR01967 201 YLKQLLPRRPDLKIIITSATI-DPERFSRHFNNAPIIEVSGRTYPVEVRYR------PLVEEQEDD-----------DLD 262 (1283)
T ss_pred HHHHHHhhCCCCeEEEEeCCc-CHHHHHHHhcCCCEEEECCCcccceeEEe------cccccccch-----------hhh
Confidence 344443345788999999999 56889988863 33333333333332111 000000000 000
Q ss_pred Chhh----HHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhce
Q psy15878 168 GPDA----VLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGV 242 (693)
Q Consensus 168 ~~~~----l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv 242 (693)
..+. +..++. ..+++|||+|++.+++.+++.|.+.+.. ...|
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~---------------------------------~~~V 309 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLR---------------------------------HTEI 309 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCC---------------------------------CcEE
Confidence 1112 222333 5689999999999999999999862111 0238
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcC---------C-----CccCCHHHHHHHhh
Q psy15878 243 AYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV---------G-----RDFISLNMYKQMVG 308 (693)
Q Consensus 243 ~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~---------g-----~~~~s~~~~~Qr~G 308 (693)
..+||+|+.++|..+++.+ +..+|||||+++++|||+|++++||+++.. | ..|+|.++|.||+|
T Consensus 310 lpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaG 387 (1283)
T TIGR01967 310 LPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKG 387 (1283)
T ss_pred EeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhh
Confidence 8999999999999986643 347999999999999999999999997631 1 14789999999999
Q ss_pred ccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCc
Q psy15878 309 RAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSP 388 (693)
Q Consensus 309 RaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p 388 (693)
||||.+ +|.||.++++. +...... ...+|.. ..+|...+|.+.++|... +.+| .|+..
T Consensus 388 RAGR~~---~G~cyRLyte~-~~~~~~~--~~~PEIl-----R~~L~~viL~l~~lg~~d----i~~f---~fldp---- 445 (1283)
T TIGR01967 388 RCGRVA---PGICIRLYSEE-DFNSRPE--FTDPEIL-----RTNLASVILQMLALRLGD----IAAF---PFIEA---- 445 (1283)
T ss_pred hhCCCC---CceEEEecCHH-HHHhhhh--ccCcccc-----cccHHHHHHHHHhcCCCC----cccc---cCCCC----
Confidence 999999 99999999877 4332221 2233322 346788999988877531 2222 23322
Q ss_pred hhhhhhhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhh
Q psy15878 389 EDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLH 450 (693)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~ 450 (693)
+....+..+++.|.+.|+|+.++. ...+|++|+.++.+|++|..+++++.+...
T Consensus 446 ------P~~~~i~~A~~~L~~LGAld~~~~--~~~LT~lGr~ma~LPldPrlarmLl~a~~~ 499 (1283)
T TIGR01967 446 ------PDPRAIRDGFRLLEELGALDDDEA--EPQLTPIGRQLAQLPVDPRLARMLLEAHRL 499 (1283)
T ss_pred ------CCHHHHHHHHHHHHHCCCCCCCCC--CccccHHHHHHhhcCCChHHHHHHHHhhhc
Confidence 234568899999999999985432 267999999999999999999999987653
No 31
>KOG0326|consensus
Probab=99.98 E-value=1.3e-31 Score=261.18 Aligned_cols=280 Identities=19% Similarity=0.225 Sum_probs=216.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|..+-..++++.+|++|...+||++-.+..-+.....|++|+||++...|..+ .-..+++...+|+|||+.+.+.
T Consensus 165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K--gVa~ls~c~~lV~DEADKlLs~ 242 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK--GVADLSDCVILVMDEADKLLSV 242 (459)
T ss_pred hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc--ccccchhceEEEechhhhhhch
Confidence 56677788888899999999999999987777776668899999999998877776 4467899999999999999998
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHH-HhhcCCCccCCCCcccceeeEE-eCceeeeecCCCCchhhhc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALS-TFIEGITYVENSRPTKHSEYVT-VDKRVFQSFDGKSLTEIYA 157 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la-~~l~~~~~~~~~rpv~l~~~~~-~~~~~~~~~~~~~~~~~~~ 157 (693)
.|++.++.++..+ ++..|+++.|||.|. ...|. +++..+.. +.+-+... .+...|.
T Consensus 243 ~F~~~~e~li~~l---P~~rQillySATFP~tVk~Fm~~~l~kPy~------INLM~eLtl~GvtQyY------------ 301 (459)
T KOG0326|consen 243 DFQPIVEKLISFL---PKERQILLYSATFPLTVKGFMDRHLKKPYE------INLMEELTLKGVTQYY------------ 301 (459)
T ss_pred hhhhHHHHHHHhC---CccceeeEEecccchhHHHHHHHhccCcce------eehhhhhhhcchhhhe------------
Confidence 9999999998875 788999999999985 33333 23322111 11111000 0000110
Q ss_pred ccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHH
Q psy15878 158 DNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLE 235 (693)
Q Consensus 158 ~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 235 (693)
.|.....+.-.+..+.+ .-.+.||||||.+.+|.+|+.+.+.|+.
T Consensus 302 ---afV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGys------------------------------ 348 (459)
T KOG0326|consen 302 ---AFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYS------------------------------ 348 (459)
T ss_pred ---eeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccch------------------------------
Confidence 01112223333444444 6679999999999999999999884443
Q ss_pred HHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCC
Q psy15878 236 ECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGL 315 (693)
Q Consensus 236 ~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~ 315 (693)
+.|.|+.|.+++|..|+..|++|..+.||||+.+.+|||+++++|||++++ |-+..+|+||+||+||.|
T Consensus 349 ------cyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDf----pk~aEtYLHRIGRsGRFG- 417 (459)
T KOG0326|consen 349 ------CYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDF----PKNAETYLHRIGRSGRFG- 417 (459)
T ss_pred ------hhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCC----CCCHHHHHHHccCCccCC-
Confidence 788999999999999999999999999999999999999999999999998 778999999999999999
Q ss_pred CCCCcEEEEecccccHHHH---HHHHhCCCCcccccC
Q psy15878 316 QESGESIMLCKTMQDFLRF---SSMMNAGPEPISSHM 349 (693)
Q Consensus 316 d~~G~~i~l~~~~~~~~~~---~~~l~~~~~~i~s~l 349 (693)
..|.++-+++.. +...+ ++-+-.++.|+.+..
T Consensus 418 -hlGlAInLitye-drf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 418 -HLGLAINLITYE-DRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred -CcceEEEEEehh-hhhhHHHHHHHhccccccCCCcC
Confidence 689999999877 55443 444556666766655
No 32
>PTZ00424 helicase 45; Provisional
Probab=99.98 E-value=1e-31 Score=293.80 Aligned_cols=269 Identities=18% Similarity=0.253 Sum_probs=193.8
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|..+.+..++...+..+..+.|+............+++|+|+||+++..++.+ ....++++++||+||+|++.+.
T Consensus 108 L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~i~lvViDEah~~~~~ 185 (401)
T PTZ00424 108 LAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK--RHLRVDDLKLFILDEADEMLSR 185 (401)
T ss_pred HHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh--CCcccccccEEEEecHHHHHhc
Confidence 57888888999988888888888887643333333345689999999997665553 3345799999999999999876
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHH-HhhcCCCcc-CCCCcccceeeEEeCceeeeecCCCCchhhhc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALS-TFIEGITYV-ENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYA 157 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la-~~l~~~~~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (693)
+++..+..++.+ ..+++|++++|||+++ ..++. .++...... .......+. ....+....
T Consensus 186 ~~~~~~~~i~~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--------- 248 (401)
T PTZ00424 186 GFKGQIYDVFKK---LPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLE-----GIRQFYVAV--------- 248 (401)
T ss_pred chHHHHHHHHhh---CCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccC-----CceEEEEec---------
Confidence 766665555544 3678999999999986 22222 333221100 000000000 000000000
Q ss_pred ccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHH
Q psy15878 158 DNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLE 235 (693)
Q Consensus 158 ~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 235 (693)
.......+.+..++. ...++||||+|++.|+.++..|...+
T Consensus 249 -----~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~-------------------------------- 291 (401)
T PTZ00424 249 -----EKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERD-------------------------------- 291 (401)
T ss_pred -----ChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCC--------------------------------
Confidence 001112233444554 56789999999999999999887622
Q ss_pred HHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCC
Q psy15878 236 ECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGL 315 (693)
Q Consensus 236 ~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~ 315 (693)
.++.++||+|+.++|..+++.|++|+++|||||+++++|||+|++++||+++. |.+..+|.||+|||||.|
T Consensus 292 ----~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~----p~s~~~y~qr~GRagR~g- 362 (401)
T PTZ00424 292 ----FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDL----PASPENYIHRIGRSGRFG- 362 (401)
T ss_pred ----CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECC----CCCHHHEeecccccccCC-
Confidence 34999999999999999999999999999999999999999999999999875 789999999999999998
Q ss_pred CCCCcEEEEecccccHHHHHH
Q psy15878 316 QESGESIMLCKTMQDFLRFSS 336 (693)
Q Consensus 316 d~~G~~i~l~~~~~~~~~~~~ 336 (693)
..|.|+.++++. +.+.+.+
T Consensus 363 -~~G~~i~l~~~~-~~~~~~~ 381 (401)
T PTZ00424 363 -RKGVAINFVTPD-DIEQLKE 381 (401)
T ss_pred -CCceEEEEEcHH-HHHHHHH
Confidence 689999999887 6555543
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=3.3e-31 Score=294.92 Aligned_cols=268 Identities=19% Similarity=0.222 Sum_probs=196.6
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccc-cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQ-LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~-~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
||.|+++.++.+...+++++..++|+.....+.... ...++|+|+||+++..+..+ ....++++++|||||+|.+.+
T Consensus 174 La~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~--~~~~l~~l~~lViDEah~l~~ 251 (475)
T PRK01297 174 LVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR--GEVHLDMVEVMVLDEADRMLD 251 (475)
T ss_pred HHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc--CCcccccCceEEechHHHHHh
Confidence 688999999999988999999999876433333222 25689999999998665544 345679999999999999988
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH-hhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhc
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST-FIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYA 157 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~-~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (693)
..+...+..++..+.. ..+.|++++|||+++ ...+++ |+...... ...+..... -.....++.+
T Consensus 252 ~~~~~~l~~i~~~~~~-~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v-~~~~~~~~~-~~~~~~~~~~----------- 317 (475)
T PRK01297 252 MGFIPQVRQIIRQTPR-KEERQTLLFSATFTDDVMNLAKQWTTDPAIV-EIEPENVAS-DTVEQHVYAV----------- 317 (475)
T ss_pred cccHHHHHHHHHhCCC-CCCceEEEEEeecCHHHHHHHHHhccCCEEE-EeccCcCCC-CcccEEEEEe-----------
Confidence 7787777777665421 235699999999874 445544 43322110 000000000 0000001110
Q ss_pred ccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHH
Q psy15878 158 DNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLE 235 (693)
Q Consensus 158 ~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 235 (693)
....+...+..++. ...++||||++++.|+.++..|...+.
T Consensus 318 ------~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~------------------------------- 360 (475)
T PRK01297 318 ------AGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGI------------------------------- 360 (475)
T ss_pred ------cchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCC-------------------------------
Confidence 01223344556665 556999999999999999998876322
Q ss_pred HHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCC
Q psy15878 236 ECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGL 315 (693)
Q Consensus 236 ~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~ 315 (693)
.+..+||+++.++|..+++.|++|.++|||||+++++|||+|++++||++++ |.|..+|+||+|||||.|
T Consensus 361 -----~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~----P~s~~~y~Qr~GRaGR~g- 430 (475)
T PRK01297 361 -----NAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL----PEDPDDYVHRIGRTGRAG- 430 (475)
T ss_pred -----CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCC----CCCHHHHHHhhCccCCCC-
Confidence 3889999999999999999999999999999999999999999999999986 779999999999999999
Q ss_pred CCCCcEEEEecccccHHH
Q psy15878 316 QESGESIMLCKTMQDFLR 333 (693)
Q Consensus 316 d~~G~~i~l~~~~~~~~~ 333 (693)
..|.+++++.+. |...
T Consensus 431 -~~g~~i~~~~~~-d~~~ 446 (475)
T PRK01297 431 -ASGVSISFAGED-DAFQ 446 (475)
T ss_pred -CCceEEEEecHH-HHHH
Confidence 679999999876 5443
No 34
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.97 E-value=6e-31 Score=297.87 Aligned_cols=268 Identities=14% Similarity=0.191 Sum_probs=197.9
Q ss_pred ChhhHHHHHHHHhhhh-CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEF-KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
||.|.++.++.+...+ ++++..++|+.....+.......++|+|+||+++..++.+ ....++++++||+||||.+.+
T Consensus 86 La~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r--~~l~l~~l~~lVlDEAd~ml~ 163 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR--GTLDLSKLSGLVLDEADEMLR 163 (629)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcchhhceEEEeccHHHHhh
Confidence 5788888888887765 7899888888643333333346799999999997655543 334579999999999999988
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH-hhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhc
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST-FIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYA 157 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~-~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (693)
..+...++.++..+ +...|+++||||+|+ ...++. |+................ .+.+..+.+
T Consensus 164 ~gf~~di~~Il~~l---p~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~--~i~q~~~~v----------- 227 (629)
T PRK11634 164 MGFIEDVETIMAQI---PEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP--DISQSYWTV----------- 227 (629)
T ss_pred cccHHHHHHHHHhC---CCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCC--ceEEEEEEe-----------
Confidence 88888887777664 577899999999986 444443 332211000000000000 000000000
Q ss_pred ccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHH
Q psy15878 158 DNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLE 235 (693)
Q Consensus 158 ~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 235 (693)
....+.+.+..++. ...++||||+|+..|+.++..|...++
T Consensus 228 ------~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~------------------------------- 270 (629)
T PRK11634 228 ------WGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGY------------------------------- 270 (629)
T ss_pred ------chhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCC-------------------------------
Confidence 01123345555555 557899999999999999999987433
Q ss_pred HHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCC
Q psy15878 236 ECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGL 315 (693)
Q Consensus 236 ~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~ 315 (693)
.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+++. |.+..+|.||+||+||.|
T Consensus 271 -----~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~----P~~~e~yvqRiGRtGRaG- 340 (629)
T PRK11634 271 -----NSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDI----PMDSESYVHRIGRTGRAG- 340 (629)
T ss_pred -----CEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCC----CCCHHHHHHHhccccCCC-
Confidence 3889999999999999999999999999999999999999999999999885 789999999999999999
Q ss_pred CCCCcEEEEecccccHHHHH
Q psy15878 316 QESGESIMLCKTMQDFLRFS 335 (693)
Q Consensus 316 d~~G~~i~l~~~~~~~~~~~ 335 (693)
..|.+++++.+. +...+.
T Consensus 341 -r~G~ai~~v~~~-e~~~l~ 358 (629)
T PRK11634 341 -RAGRALLFVENR-ERRLLR 358 (629)
T ss_pred -CcceEEEEechH-HHHHHH
Confidence 689999999877 554443
No 35
>KOG0923|consensus
Probab=99.97 E-value=6.2e-31 Score=277.86 Aligned_cols=350 Identities=18% Similarity=0.215 Sum_probs=257.4
Q ss_pred HHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHH
Q psy15878 10 AKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECV 89 (693)
Q Consensus 10 ~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~i 89 (693)
.+.++++|.+.+.=.|..-+++...- .+.-|-++|.+. |++.++..+.|.+++++||||||... -....+-.+
T Consensus 328 aRVA~EMgvkLG~eVGYsIRFEdcTS--ekTvlKYMTDGm---LlREfL~epdLasYSViiiDEAHERT--L~TDILfgL 400 (902)
T KOG0923|consen 328 ARVAEEMGVKLGHEVGYSIRFEDCTS--EKTVLKYMTDGM---LLREFLSEPDLASYSVIIVDEAHERT--LHTDILFGL 400 (902)
T ss_pred HHHHHHhCcccccccceEEEeccccC--cceeeeeecchh---HHHHHhccccccceeEEEeehhhhhh--hhhhHHHHH
Confidence 34455666655444444333332221 556788999998 68999999999999999999999543 244566667
Q ss_pred HHHHhccCCCceEEEEcCcCCCHHHHHHhhc-CCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCC
Q psy15878 90 VSKVLYLKKSIQIFAMSATIGNINALSTFIE-GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSG 168 (693)
Q Consensus 90 l~~l~~~~~~~qii~lSATl~n~~~la~~l~-~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (693)
+..+.+.+++.+++.+|||+ |++.|+.|++ +++|....|..|+..+... .+..++ -
T Consensus 401 vKDIar~RpdLKllIsSAT~-DAekFS~fFDdapIF~iPGRRyPVdi~Yt~-------~PEAdY---------------l 457 (902)
T KOG0923|consen 401 VKDIARFRPDLKLLISSATM-DAEKFSAFFDDAPIFRIPGRRYPVDIFYTK-------APEADY---------------L 457 (902)
T ss_pred HHHHHhhCCcceEEeecccc-CHHHHHHhccCCcEEeccCcccceeeeccc-------CCchhH---------------H
Confidence 77777778999999999998 8999999996 4677777777776543320 010000 0
Q ss_pred hhhHHHHHh-----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceE
Q psy15878 169 PDAVLHLVQ-----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVA 243 (693)
Q Consensus 169 ~~~l~~l~~-----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~ 243 (693)
...+..+++ +.+.+|||.....+.+.+.+.|.+. . ..|... ..+ .=|.
T Consensus 458 dAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~--~--------------~~LGsk--------i~e---liv~ 510 (902)
T KOG0923|consen 458 DAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKER--C--------------RRLGSK--------IRE---LIVL 510 (902)
T ss_pred HHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHH--H--------------HHhccc--------cce---EEEe
Confidence 011222222 7899999999999999888877651 1 111111 111 1288
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcC---------CC-----ccCCHHHHHHHhhc
Q psy15878 244 YHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV---------GR-----DFISLNMYKQMVGR 309 (693)
Q Consensus 244 ~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~---------g~-----~~~s~~~~~Qr~GR 309 (693)
++|+.||.+.+..|++.-..|..+|++||++++.+++|+++.+||+.++. |. .|+|.++..||+||
T Consensus 511 PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGR 590 (902)
T KOG0923|consen 511 PIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGR 590 (902)
T ss_pred eccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccc
Confidence 89999999999999999999999999999999999999999999996542 32 38999999999999
Q ss_pred cCCCCCCCCCcEEEEecccccHHHHHHHHhCCC-CcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCc
Q psy15878 310 AGRTGLQESGESIMLCKTMQDFLRFSSMMNAGP-EPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSP 388 (693)
Q Consensus 310 aGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~-~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p 388 (693)
|||.| +|.||.+++.. .|...+.... |.+. ..+|.+.+|.+.++|+ .+.+...|+..
T Consensus 591 AGRtg---PGKCfRLYt~~----aY~~eLE~~t~PEIq----RtnL~nvVL~LkSLGI-------~Dl~~FdFmDp---- 648 (902)
T KOG0923|consen 591 AGRTG---PGKCFRLYTAW----AYEHELEEMTVPEIQ----RTNLGNVVLLLKSLGI-------HDLIHFDFLDP---- 648 (902)
T ss_pred cCCCC---CCceEEeechh----hhhhhhccCCCccee----eccchhHHHHHHhcCc-------chhcccccCCC----
Confidence 99999 99999999765 3433333222 2221 3578999999999985 35666677655
Q ss_pred hhhhhhhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhh
Q psy15878 389 EDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLL 449 (693)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~ 449 (693)
+..+.+..+++.|-.+|++... .++|.+|+.|+++|++|..+++++.+=+
T Consensus 649 ------Pp~etL~~aLE~LyaLGALn~~-----GeLTk~GrrMaEfP~dPmlsKmi~as~k 698 (902)
T KOG0923|consen 649 ------PPTETLLKALEQLYALGALNHL-----GELTKLGRRMAEFPVDPMLSKMIVASEK 698 (902)
T ss_pred ------CChHHHHHHHHHHHHhhccccc-----cchhhhhhhhhhcCCCHHHHhHHhhhcc
Confidence 3345567889999999999865 6799999999999999999999987543
No 36
>KOG0328|consensus
Probab=99.97 E-value=1.8e-30 Score=249.19 Aligned_cols=269 Identities=18% Similarity=0.212 Sum_probs=204.8
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|.-+.+..++..+++++....||++-.+..++.--+.+++.+||++...++++ ..-..+.+.++|+||++.+.+.
T Consensus 107 La~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr--~~L~tr~vkmlVLDEaDemL~k 184 (400)
T KOG0328|consen 107 LAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR--RSLRTRAVKMLVLDEADEMLNK 184 (400)
T ss_pred HHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh--ccccccceeEEEeccHHHHHHh
Confidence 56778888889999999999999999876666666556889999999997766654 2334589999999999988877
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADN 159 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (693)
.++.+.-.+. +++++++|++++|||+|. ..+..+.+. +-|++-.++.+. ..++-....-
T Consensus 185 gfk~Qiydiy---r~lp~~~Qvv~~SATlp~eilemt~kfm---------tdpvrilvkrde--------ltlEgIKqf~ 244 (400)
T KOG0328|consen 185 GFKEQIYDIY---RYLPPGAQVVLVSATLPHEILEMTEKFM---------TDPVRILVKRDE--------LTLEGIKQFF 244 (400)
T ss_pred hHHHHHHHHH---HhCCCCceEEEEeccCcHHHHHHHHHhc---------CCceeEEEecCC--------Cchhhhhhhe
Confidence 7776655544 456889999999999984 222222221 222222222110 0000000000
Q ss_pred ccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHH
Q psy15878 160 LDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEEC 237 (693)
Q Consensus 160 ~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~ 237 (693)
........+.+.+..+.. .-.+++|||||++.+..+.+.+.+..+.
T Consensus 245 v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nft-------------------------------- 292 (400)
T KOG0328|consen 245 VAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT-------------------------------- 292 (400)
T ss_pred eeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCce--------------------------------
Confidence 001113345677777776 6789999999999999999998873333
Q ss_pred HhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCC
Q psy15878 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQE 317 (693)
Q Consensus 238 ~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~ 317 (693)
|...||+|++++|+.+.+.||+|.-+||++|++-++|+|+|.+++||+++. |.....|+||+||.||.| .
T Consensus 293 ----VssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDL----P~nre~YIHRIGRSGRFG--R 362 (400)
T KOG0328|consen 293 ----VSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDL----PNNRELYIHRIGRSGRFG--R 362 (400)
T ss_pred ----eeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCC----CccHHHHhhhhccccccC--C
Confidence 999999999999999999999999999999999999999999999999996 778899999999999999 7
Q ss_pred CCcEEEEecccccHHHH
Q psy15878 318 SGESIMLCKTMQDFLRF 334 (693)
Q Consensus 318 ~G~~i~l~~~~~~~~~~ 334 (693)
.|.++-|+.+. +...+
T Consensus 363 kGvainFVk~~-d~~~l 378 (400)
T KOG0328|consen 363 KGVAINFVKSD-DLRIL 378 (400)
T ss_pred cceEEEEecHH-HHHHH
Confidence 99999999888 65544
No 37
>KOG0333|consensus
Probab=99.97 E-value=1.6e-30 Score=268.71 Aligned_cols=267 Identities=17% Similarity=0.216 Sum_probs=210.9
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||+|+.++-.+|++.+|+++..+.||.+..++--+....|+|+|+||+++...+.. ..-.++++.+||+|||+.+.|.
T Consensus 334 LaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len--r~lvl~qctyvvldeadrmiDm 411 (673)
T KOG0333|consen 334 LAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN--RYLVLNQCTYVVLDEADRMIDM 411 (673)
T ss_pred HHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH--HHHHhccCceEeccchhhhhcc
Confidence 68899999999999999999999999775544333447899999999996543322 1224589999999999999999
Q ss_pred CChHHHHHHHHHHhccCCC----------------------ceEEEEcCcCCC-HHHHH-HhhcCCCc---cCCCCcccc
Q psy15878 81 QRGPILECVVSKVLYLKKS----------------------IQIFAMSATIGN-INALS-TFIEGITY---VENSRPTKH 133 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~----------------------~qii~lSATl~n-~~~la-~~l~~~~~---~~~~rpv~l 133 (693)
++.+.+..++..+-..+.. .|.+.+|||++. ++.++ .||..+.+ ....+|.+.
T Consensus 412 gfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~r 491 (673)
T KOG0333|consen 412 GFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPR 491 (673)
T ss_pred cccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccc
Confidence 9999999999887533211 689999999986 56666 46655432 222344443
Q ss_pred eeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccc
Q psy15878 134 SEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYK 211 (693)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~ 211 (693)
.+ +.++.+. ...+.+.|.+++. ...++|||+|+++.|+.+|+.|.+.++
T Consensus 492 ve-----Q~v~m~~-----------------ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~------- 542 (673)
T KOG0333|consen 492 VE-----QKVEMVS-----------------EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY------- 542 (673)
T ss_pred hh-----eEEEEec-----------------chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc-------
Confidence 21 1122221 2233566777777 478999999999999999999988443
Q ss_pred hhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecC
Q psy15878 212 KQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS 291 (693)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~ 291 (693)
.+..+|||-++++|+.++..|++|...|+|||+++++|||+|++.+||+++
T Consensus 543 -----------------------------~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinyd 593 (673)
T KOG0333|consen 543 -----------------------------KVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYD 593 (673)
T ss_pred -----------------------------eEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecc
Confidence 388999999999999999999999999999999999999999999999998
Q ss_pred cCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHH
Q psy15878 292 YVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRF 334 (693)
Q Consensus 292 ~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~ 334 (693)
+ .-|..+|.||+||+||+| .+|.++.|+++. +...|
T Consensus 594 m----aksieDYtHRIGRTgRAG--k~GtaiSflt~~-dt~v~ 629 (673)
T KOG0333|consen 594 M----AKSIEDYTHRIGRTGRAG--KSGTAISFLTPA-DTAVF 629 (673)
T ss_pred h----hhhHHHHHHHhccccccc--cCceeEEEeccc-hhHHH
Confidence 6 558999999999999999 799999999988 54433
No 38
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=2e-30 Score=293.99 Aligned_cols=346 Identities=19% Similarity=0.206 Sum_probs=252.0
Q ss_pred HHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHH
Q psy15878 10 AKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECV 89 (693)
Q Consensus 10 ~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~i 89 (693)
++.++++|-+++...|..-+++... -.+..|-++|.+. |++.+..++.|..+++||+||+|.-+ -....+-.+
T Consensus 112 ~RvAeel~~~~G~~VGY~iRfe~~~--s~~Trik~mTdGi---Llrei~~D~~Ls~ys~vIiDEaHERS--l~tDilLgl 184 (845)
T COG1643 112 ERVAEELGEKLGETVGYSIRFESKV--SPRTRIKVMTDGI---LLREIQNDPLLSGYSVVIIDEAHERS--LNTDILLGL 184 (845)
T ss_pred HHHHHHhCCCcCceeeEEEEeeccC--CCCceeEEeccHH---HHHHHhhCcccccCCEEEEcchhhhh--HHHHHHHHH
Confidence 4456667777777666644433322 2578999999997 57777788899999999999999443 122233333
Q ss_pred HHHH-hccCCCceEEEEcCcCCCHHHHHHhhc-CCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCC
Q psy15878 90 VSKV-LYLKKSIQIFAMSATIGNINALSTFIE-GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGS 167 (693)
Q Consensus 90 l~~l-~~~~~~~qii~lSATl~n~~~la~~l~-~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (693)
+.++ ...+++.++|.||||+ |.++|+++++ ++.+..+.|..|++.++.. ....+. .
T Consensus 185 lk~~~~~rr~DLKiIimSATl-d~~rfs~~f~~apvi~i~GR~fPVei~Y~~-------~~~~d~--------------~ 242 (845)
T COG1643 185 LKDLLARRRDDLKLIIMSATL-DAERFSAYFGNAPVIEIEGRTYPVEIRYLP-------EAEADY--------------I 242 (845)
T ss_pred HHHHHhhcCCCceEEEEeccc-CHHHHHHHcCCCCEEEecCCccceEEEecC-------CCCcch--------------h
Confidence 3332 2234579999999999 7899999998 7888888888887644310 000000 0
Q ss_pred ChhhHHHHHh-----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhce
Q psy15878 168 GPDAVLHLVQ-----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGV 242 (693)
Q Consensus 168 ~~~~l~~l~~-----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv 242 (693)
..+.+...+. ..+.+|||.|..++++.+++.|.+.... -..-|
T Consensus 243 l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~--------------------------------~~~~i 290 (845)
T COG1643 243 LLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELG--------------------------------DDLEI 290 (845)
T ss_pred HHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhcccc--------------------------------CCcEE
Confidence 1122333332 7899999999999999999999861110 00228
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCc---------CCC-----ccCCHHHHHHHhh
Q psy15878 243 AYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY---------VGR-----DFISLNMYKQMVG 308 (693)
Q Consensus 243 ~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~---------~g~-----~~~s~~~~~Qr~G 308 (693)
.++||.|+.+++..+++....|..+|++||++++.+++||++++||+++. .|. .|+|.++..||.|
T Consensus 291 ~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaG 370 (845)
T COG1643 291 LPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAG 370 (845)
T ss_pred eeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999743 121 4799999999999
Q ss_pred ccCCCCCCCCCcEEEEecccccHHHHHHHHhC-CCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccC
Q psy15878 309 RAGRTGLQESGESIMLCKTMQDFLRFSSMMNA-GPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKS 387 (693)
Q Consensus 309 RaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~-~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~ 387 (693)
||||.+ +|.||.++++. + +..+... .+|.+. .+|...+|.+.++|.- .+.....|+..
T Consensus 371 RAGR~~---pGicyRLyse~-~---~~~~~~~t~PEIlr-----tdLs~~vL~l~~~G~~------~d~~~f~fld~--- 429 (845)
T COG1643 371 RAGRTG---PGICYRLYSEE-D---FLAFPEFTLPEILR-----TDLSGLVLQLKSLGIG------QDIAPFPFLDP--- 429 (845)
T ss_pred ccccCC---CceEEEecCHH-H---HHhcccCCChhhhh-----cchHHHHHHHHhcCCC------CCcccCccCCC---
Confidence 999999 99999999886 3 3343333 333333 3567789999888863 11223344433
Q ss_pred chhhhhhhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhh
Q psy15878 388 PEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLL 449 (693)
Q Consensus 388 p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~ 449 (693)
+....+..+++.|...|+++.+ -.+|++|+.|+.+|++|+.|++++.+-.
T Consensus 430 -------P~~~~i~~A~~~L~~LGAld~~-----g~LT~lG~~ms~lpldprLA~mLl~a~~ 479 (845)
T COG1643 430 -------PPEAAIQAALTLLQELGALDDS-----GKLTPLGKQMSLLPLDPRLARMLLTAPE 479 (845)
T ss_pred -------CChHHHHHHHHHHHHcCCcCCC-----CCCCHHHHHHHhCCCChHHHHHHHhccc
Confidence 3445678899999999999864 3499999999999999999999998665
No 39
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.97 E-value=9.4e-30 Score=291.47 Aligned_cols=268 Identities=19% Similarity=0.293 Sum_probs=191.1
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccc------cCCCcEEEEcccchH---HHHhchhccCCCCcccEEEE
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQ------LNKKSIYICTIEKGS---KLIGSLIQENRIDEIGLIVI 71 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~------~~~~~IiV~Tpek~~---~Ll~~l~~~~~l~~i~lvVv 71 (693)
|+++++..+.. .|+++..+.|+.....+.... ...++|+++|||++. .+++.+........+++|||
T Consensus 512 LmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVI 587 (1195)
T PLN03137 512 LIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVI 587 (1195)
T ss_pred HHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceecc
Confidence 45566655543 578888888876533222111 156899999999974 23333322223356899999
Q ss_pred ecccccCCCC--ChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHHhhcCC---CccCCCCcccceeeEEeCceee
Q psy15878 72 DEFHMLNEPQ--RGPILECVVSKVLYLKKSIQIFAMSATIGN--INALSTFIEGI---TYVENSRPTKHSEYVTVDKRVF 144 (693)
Q Consensus 72 DE~H~l~d~~--rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~~l~~~---~~~~~~rpv~l~~~~~~~~~~~ 144 (693)
||||++++++ +.+.+..+ ..++...+..++++||||++. .+++.+.|+.. .+...+....+ .|
T Consensus 588 DEAHcVSqWGhDFRpdYr~L-~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL---------~y 657 (1195)
T PLN03137 588 DEAHCVSQWGHDFRPDYQGL-GILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNL---------WY 657 (1195)
T ss_pred CcchhhhhcccchHHHHHHH-HHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccce---------EE
Confidence 9999999876 66666543 333333467899999999974 45677776532 11111111011 11
Q ss_pred eecCCCCchhhhcccccccCCCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHH
Q psy15878 145 QSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEA 221 (693)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~ 221 (693)
.+.+. .......+..++. .+.+.||||+|++.|+.++..|...++.
T Consensus 658 ~Vv~k---------------~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gik---------------- 706 (1195)
T PLN03137 658 SVVPK---------------TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHK---------------- 706 (1195)
T ss_pred EEecc---------------chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCC----------------
Confidence 11110 0111233445554 3568999999999999999999874333
Q ss_pred HHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHH
Q psy15878 222 LKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLN 301 (693)
Q Consensus 222 l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~ 301 (693)
+.+|||||++++|..+++.|+.|.++|||||+++++|||+|++++||+++. |.|..
T Consensus 707 --------------------a~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydl----PkSiE 762 (1195)
T PLN03137 707 --------------------AAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL----PKSIE 762 (1195)
T ss_pred --------------------eeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCC----CCCHH
Confidence 899999999999999999999999999999999999999999999999986 78999
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhC
Q psy15878 302 MYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNA 340 (693)
Q Consensus 302 ~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~ 340 (693)
.|.||+|||||.| ..|.|++++... +...+..++..
T Consensus 763 sYyQriGRAGRDG--~~g~cILlys~~-D~~~~~~lI~~ 798 (1195)
T PLN03137 763 GYHQECGRAGRDG--QRSSCVLYYSYS-DYIRVKHMISQ 798 (1195)
T ss_pred HHHhhhcccCCCC--CCceEEEEecHH-HHHHHHHHHhc
Confidence 9999999999999 689999999887 77777777753
No 40
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=3.2e-29 Score=278.03 Aligned_cols=269 Identities=19% Similarity=0.237 Sum_probs=188.8
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccc---c-ccCCCcEEEEcccchHHHHhchhcc-CCCCcccEEEEeccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTK---R-QLNKKSIYICTIEKGSKLIGSLIQE-NRIDEIGLIVIDEFH 75 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~---~-~~~~~~IiV~Tpek~~~Ll~~l~~~-~~l~~i~lvVvDE~H 75 (693)
|+.|++..|+. .|+.+..+.|+........ . ....++|+++|||++..-.+ +... ....++++|||||||
T Consensus 63 L~~dq~~~l~~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~-~~~~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 63 LMEDQVLQLKA----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNR-LLQTLEERKGITLIAVDEAH 137 (470)
T ss_pred HHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchh-HHHHHHhcCCcCEEEEeCCc
Confidence 45666666653 5778877777643221110 1 12568999999998642111 1111 146889999999999
Q ss_pred ccCCCC--ChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHHhhcCC---CccCCCCcccceeeEEeCceeeeecC
Q psy15878 76 MLNEPQ--RGPILECVVSKVLYLKKSIQIFAMSATIGN--INALSTFIEGI---TYVENSRPTKHSEYVTVDKRVFQSFD 148 (693)
Q Consensus 76 ~l~d~~--rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~~l~~~---~~~~~~rpv~l~~~~~~~~~~~~~~~ 148 (693)
++++++ +.+.+..+ ..++...++.+++++|||+++ ..++.++++.. .+..++....+ .+.+..
T Consensus 138 ~i~~~g~~fr~~~~~l-~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl---------~~~v~~ 207 (470)
T TIGR00614 138 CISQWGHDFRPDYKAL-GSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNL---------YYEVRR 207 (470)
T ss_pred ccCccccccHHHHHHH-HHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCc---------EEEEEe
Confidence 998765 44555443 233334467899999999986 35677776532 11111110000 011100
Q ss_pred CCCchhhhcccccccCCCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhc
Q psy15878 149 GKSLTEIYADNLDYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEE 225 (693)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 225 (693)
. .....+.+...+. ++.++||||+|++.|+.++..|...+.
T Consensus 208 ~---------------~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~--------------------- 251 (470)
T TIGR00614 208 K---------------TPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGI--------------------- 251 (470)
T ss_pred C---------------CccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCC---------------------
Confidence 0 1112233444443 566779999999999999999987332
Q ss_pred cCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHH
Q psy15878 226 NDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQ 305 (693)
Q Consensus 226 ~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Q 305 (693)
.++.+||+|++++|..+++.|++|.++|||||+++++|||+|++++||+++. |.|..+|.|
T Consensus 252 ---------------~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~----P~s~~~y~Q 312 (470)
T TIGR00614 252 ---------------AAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL----PKSMESYYQ 312 (470)
T ss_pred ---------------CeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC----CCCHHHHHh
Confidence 3889999999999999999999999999999999999999999999999985 779999999
Q ss_pred HhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCC
Q psy15878 306 MVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGP 342 (693)
Q Consensus 306 r~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~ 342 (693)
|+|||||.| ..|.|++++.+. +...+..++....
T Consensus 313 r~GRaGR~G--~~~~~~~~~~~~-d~~~~~~~~~~~~ 346 (470)
T TIGR00614 313 ESGRAGRDG--LPSECHLFYAPA-DINRLRRLLMEEP 346 (470)
T ss_pred hhcCcCCCC--CCceEEEEechh-HHHHHHHHHhcCC
Confidence 999999999 689999999988 8777777776543
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.96 E-value=2e-28 Score=278.79 Aligned_cols=266 Identities=18% Similarity=0.246 Sum_probs=188.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCcccc----ccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKR----QLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~----~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
|+.|++..|+. .|+.+..+.++......... .....+++++|||++.. ..+...-...++++|||||||+
T Consensus 77 L~~dqv~~l~~----~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~--~~~~~~l~~~~l~~iVIDEaH~ 150 (607)
T PRK11057 77 LMKDQVDQLLA----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMM--DNFLEHLAHWNPALLAVDEAHC 150 (607)
T ss_pred HHHHHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcC--hHHHHHHhhCCCCEEEEeCccc
Confidence 45667666654 46777777665432221111 12467999999999642 1222222235789999999999
Q ss_pred cCCCC--ChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHHhhcCCC---ccCCC-CcccceeeEEeCceeeeecC
Q psy15878 77 LNEPQ--RGPILECVVSKVLYLKKSIQIFAMSATIGN--INALSTFIEGIT---YVENS-RPTKHSEYVTVDKRVFQSFD 148 (693)
Q Consensus 77 l~d~~--rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~~l~~~~---~~~~~-rpv~l~~~~~~~~~~~~~~~ 148 (693)
+++++ +.+.+.. +..++...++.++++||||+++ ..++..+++... +...+ ||. + .|.+
T Consensus 151 i~~~G~~fr~~y~~-L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~n-l---------~~~v-- 217 (607)
T PRK11057 151 ISQWGHDFRPEYAA-LGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN-I---------RYTL-- 217 (607)
T ss_pred cccccCcccHHHHH-HHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCc-c---------eeee--
Confidence 98765 4555544 3344444567899999999986 235566654320 00000 100 0 0000
Q ss_pred CCCchhhhcccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhcc
Q psy15878 149 GKSLTEIYADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEEN 226 (693)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (693)
.........+...+. .++++||||+|++.|+.++..|...+.
T Consensus 218 --------------~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~---------------------- 261 (607)
T PRK11057 218 --------------VEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGI---------------------- 261 (607)
T ss_pred --------------eeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCC----------------------
Confidence 001122334444444 678999999999999999999987433
Q ss_pred CCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHH
Q psy15878 227 DGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQM 306 (693)
Q Consensus 227 ~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr 306 (693)
.+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+++. |.|..+|.||
T Consensus 262 --------------~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~----P~s~~~y~Qr 323 (607)
T PRK11057 262 --------------SAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI----PRNIESYYQE 323 (607)
T ss_pred --------------CEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCC----CCCHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999985 7899999999
Q ss_pred hhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCC
Q psy15878 307 VGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGP 342 (693)
Q Consensus 307 ~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~ 342 (693)
+|||||.| .+|.|++++++. +...+..++....
T Consensus 324 ~GRaGR~G--~~~~~ill~~~~-d~~~~~~~~~~~~ 356 (607)
T PRK11057 324 TGRAGRDG--LPAEAMLFYDPA-DMAWLRRCLEEKP 356 (607)
T ss_pred hhhccCCC--CCceEEEEeCHH-HHHHHHHHHhcCC
Confidence 99999999 689999999988 7777777776554
No 42
>KOG0338|consensus
Probab=99.96 E-value=5.2e-29 Score=256.57 Aligned_cols=276 Identities=17% Similarity=0.207 Sum_probs=209.5
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccC--CCCcccEEEEecccccC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQEN--RIDEIGLIVIDEFHMLN 78 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~--~l~~i~lvVvDE~H~l~ 78 (693)
|+.|.+...+.+++..++.|+...||.+-..+.......|||+|+||+++ ++.+.+.+ .+.++.++|+|||+.+.
T Consensus 264 LaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRl---IDHlrNs~sf~ldsiEVLvlDEADRML 340 (691)
T KOG0338|consen 264 LAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRL---IDHLRNSPSFNLDSIEVLVLDEADRML 340 (691)
T ss_pred HHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhH---HHHhccCCCccccceeEEEechHHHHH
Confidence 56788888888998899999999999876666666668999999999995 55555444 46999999999999999
Q ss_pred CCCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhc
Q psy15878 79 EPQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYA 157 (693)
Q Consensus 79 d~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (693)
+..|...+..|+.. ++.+.|.+++|||+.+ +++++..- -.+||.+ ++..+...- +.-...+.|.
T Consensus 341 eegFademnEii~l---cpk~RQTmLFSATMteeVkdL~slS-------L~kPvri--fvd~~~~~a---~~LtQEFiRI 405 (691)
T KOG0338|consen 341 EEGFADEMNEIIRL---CPKNRQTMLFSATMTEEVKDLASLS-------LNKPVRI--FVDPNKDTA---PKLTQEFIRI 405 (691)
T ss_pred HHHHHHHHHHHHHh---ccccccceeehhhhHHHHHHHHHhh-------cCCCeEE--EeCCccccc---hhhhHHHhee
Confidence 88888888887764 4678899999999975 66666531 1123322 111000000 0000011111
Q ss_pred ccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHH
Q psy15878 158 DNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLE 235 (693)
Q Consensus 158 ~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 235 (693)
-. ......+..+..++. -...++||+.|++.|.++.-.|--
T Consensus 406 R~---~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGL---------------------------------- 448 (691)
T KOG0338|consen 406 RP---KREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGL---------------------------------- 448 (691)
T ss_pred cc---ccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHH----------------------------------
Confidence 10 002223445566665 677899999999999987765543
Q ss_pred HHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCC
Q psy15878 236 ECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGL 315 (693)
Q Consensus 236 ~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~ 315 (693)
+...++-+||+|++++|-..++.|+++++.|||||+++++|+||+.+.+||++.. |.+...|+||+||+.|.|
T Consensus 449 --lgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~m----P~t~e~Y~HRVGRTARAG- 521 (691)
T KOG0338|consen 449 --LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAM----PKTIEHYLHRVGRTARAG- 521 (691)
T ss_pred --hhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccC----chhHHHHHHHhhhhhhcc-
Confidence 2244788999999999999999999999999999999999999999999999985 889999999999999999
Q ss_pred CCCCcEEEEecccccHHHHHHHHhC
Q psy15878 316 QESGESIMLCKTMQDFLRFSSMMNA 340 (693)
Q Consensus 316 d~~G~~i~l~~~~~~~~~~~~~l~~ 340 (693)
..|+++.++.+. +...++..+.+
T Consensus 522 -RaGrsVtlvgE~-dRkllK~iik~ 544 (691)
T KOG0338|consen 522 -RAGRSVTLVGES-DRKLLKEIIKS 544 (691)
T ss_pred -cCcceEEEeccc-cHHHHHHHHhh
Confidence 799999999999 88888777765
No 43
>KOG0924|consensus
Probab=99.96 E-value=1.7e-28 Score=259.71 Aligned_cols=350 Identities=20% Similarity=0.194 Sum_probs=256.3
Q ss_pred HHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHH
Q psy15878 10 AKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECV 89 (693)
Q Consensus 10 ~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~i 89 (693)
++.+.++|...+.-.|..-+++.... ....|-.+|.+. |++..+.+..|.++++||+||||..+ .-...+-.+
T Consensus 418 krVa~EM~~~lG~~VGYsIRFEdvT~--~~T~IkymTDGi---LLrEsL~d~~L~kYSviImDEAHERs--lNtDilfGl 490 (1042)
T KOG0924|consen 418 KRVAEEMGVTLGDTVGYSIRFEDVTS--EDTKIKYMTDGI---LLRESLKDRDLDKYSVIIMDEAHERS--LNTDILFGL 490 (1042)
T ss_pred HHHHHHhCCccccccceEEEeeecCC--CceeEEEeccch---HHHHHhhhhhhhheeEEEechhhhcc--cchHHHHHH
Confidence 44555665555554454434443332 456788999997 67888888999999999999999654 223445555
Q ss_pred HHHHhccCCCceEEEEcCcCCCHHHHHHhhc-CCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCC
Q psy15878 90 VSKVLYLKKSIQIFAMSATIGNINALSTFIE-GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSG 168 (693)
Q Consensus 90 l~~l~~~~~~~qii~lSATl~n~~~la~~l~-~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (693)
+..+...+.+.++|.+|||+ |++.|++|+| ++.|.-..|..|++.... .. ..
T Consensus 491 lk~~larRrdlKliVtSATm-~a~kf~nfFgn~p~f~IpGRTyPV~~~~~-------k~-------------------p~ 543 (1042)
T KOG0924|consen 491 LKKVLARRRDLKLIVTSATM-DAQKFSNFFGNCPQFTIPGRTYPVEIMYT-------KT-------------------PV 543 (1042)
T ss_pred HHHHHHhhccceEEEeeccc-cHHHHHHHhCCCceeeecCCccceEEEec-------cC-------------------ch
Confidence 55555556799999999998 8999999999 777877888777653221 00 11
Q ss_pred hhhHHHHHh---------cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHh
Q psy15878 169 PDAVLHLVQ---------GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECIL 239 (693)
Q Consensus 169 ~~~l~~l~~---------~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~ 239 (693)
.|.+...+. ..+.+|||.+....++..+..+.. .+ ..+..... -.
T Consensus 544 eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~--~l--------------~ql~~~~~----------~~ 597 (1042)
T KOG0924|consen 544 EDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKE--KL--------------EQLDSAPT----------TD 597 (1042)
T ss_pred HHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHH--HH--------------HhhhcCCC----------Cc
Confidence 122222221 568999999999999998888876 11 11111110 01
Q ss_pred hceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCc---------CCC-----ccCCHHHHHH
Q psy15878 240 YGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY---------VGR-----DFISLNMYKQ 305 (693)
Q Consensus 240 ~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~---------~g~-----~~~s~~~~~Q 305 (693)
..|..+++.|+..-+..++.....|..++||||++++.++++|++.+||+.+| .|. .|+|.++..|
T Consensus 598 L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~Q 677 (1042)
T KOG0924|consen 598 LAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQ 677 (1042)
T ss_pred eEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchh
Confidence 34889999999999999999999999999999999999999999999999754 342 3899999999
Q ss_pred HhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhc
Q psy15878 306 MVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQL 385 (693)
Q Consensus 306 r~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~ 385 (693)
|+|||||.| +|.||.+++.. .+...++..+.|.+. ..++.+.+|.+.++|. + +.+...|+.+
T Consensus 678 RaGRAGRt~---pG~cYRlYTe~---ay~~eml~stvPEIq----RTNl~nvVLlLkslgV----~---dll~FdFmD~- 739 (1042)
T KOG0924|consen 678 RAGRAGRTG---PGTCYRLYTED---AYKNEMLPSTVPEIQ----RTNLSNVVLLLKSLGV----D---DLLKFDFMDP- 739 (1042)
T ss_pred hccccCCCC---Ccceeeehhhh---HHHhhcccCCCchhh----hcchhhHHHHHHhcCh----h---hhhCCCcCCC-
Confidence 999999999 99999999876 234556666664433 2478888998888774 3 3444456544
Q ss_pred cCchhhhhhhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhh
Q psy15878 386 KSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHN 451 (693)
Q Consensus 386 ~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~ 451 (693)
++.+.+..++-.|-..|++... ..+|++|+.|+.++++|..+++++-+..-.
T Consensus 740 ---------Pped~~~~sly~Lw~LGAl~~~-----g~LT~lG~~MvefpLDP~lsKmll~a~~~G 791 (1042)
T KOG0924|consen 740 ---------PPEDNLLNSLYQLWTLGALDNT-----GQLTPLGRKMVEFPLDPPLSKMLLMAARMG 791 (1042)
T ss_pred ---------CHHHHHHHHHHHHHHhhccccC-----CccchhhHHhhhCCCCchHHHHHHHHhccC
Confidence 3344566778888889999853 579999999999999999999998765444
No 44
>KOG0342|consensus
Probab=99.96 E-value=5.7e-28 Score=249.15 Aligned_cols=272 Identities=14% Similarity=0.170 Sum_probs=203.1
Q ss_pred ChhhHHHHHHHHhhhh-CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccC--CCCcccEEEEeccccc
Q psy15878 1 MVHEKYQSLAKAAEEF-KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQEN--RIDEIGLIVIDEFHML 77 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~--~l~~i~lvVvDE~H~l 77 (693)
||.|.+.+.+++.... ++.|..+.||+.......+..++++|+|+||+++. +.+.+.+ ..++++++|+|||+++
T Consensus 166 LA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLl---DHlqNt~~f~~r~~k~lvlDEADrl 242 (543)
T KOG0342|consen 166 LAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLL---DHLQNTSGFLFRNLKCLVLDEADRL 242 (543)
T ss_pred HHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHH---hHhhcCCcchhhccceeEeecchhh
Confidence 6889999999998888 89999999998765555555579999999999964 4333333 3488899999999999
Q ss_pred CCCCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHhh-cC-CCccCCCCcccceeeEEeCceeeeecCCCCchh
Q psy15878 78 NEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTFI-EG-ITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTE 154 (693)
Q Consensus 78 ~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~l-~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 154 (693)
.|.+|...++.|+.-+ +...|.+++|||.+. .++++.-. .. ..|.....+-....+-.+.+ .|.+
T Consensus 243 Ld~GF~~di~~Ii~~l---pk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Q-gyvv-------- 310 (543)
T KOG0342|consen 243 LDIGFEEDVEQIIKIL---PKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQ-GYVV-------- 310 (543)
T ss_pred hhcccHHHHHHHHHhc---cccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccc-eEEe--------
Confidence 9999999999998876 578899999999985 66666532 11 11111100000000000001 0111
Q ss_pred hhcccccccCCCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccc
Q psy15878 155 IYADNLDYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLS 231 (693)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 231 (693)
.+.....-.+..++. ...++||||+|...+...++.|....
T Consensus 311 --------~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~d---------------------------- 354 (543)
T KOG0342|consen 311 --------APSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYID---------------------------- 354 (543)
T ss_pred --------ccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcC----------------------------
Confidence 111122334445555 44899999999999999999887511
Q ss_pred hHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccC
Q psy15878 232 TNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAG 311 (693)
Q Consensus 232 ~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaG 311 (693)
..|.-+||++++..|..+...|++.+.-|||||+++|+|+|+|+++.||+++. |-++.+|+||+||+|
T Consensus 355 --------lpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~----P~d~~~YIHRvGRTa 422 (543)
T KOG0342|consen 355 --------LPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDP----PSDPEQYIHRVGRTA 422 (543)
T ss_pred --------CchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCC----CCCHHHHHHHhcccc
Confidence 23778999999999999999999999999999999999999999999999984 789999999999999
Q ss_pred CCCCCCCCcEEEEecccccHHHHHHHHh
Q psy15878 312 RTGLQESGESIMLCKTMQDFLRFSSMMN 339 (693)
Q Consensus 312 R~g~d~~G~~i~l~~~~~~~~~~~~~l~ 339 (693)
|.| ..|+++++..+. +...+ +++.
T Consensus 423 R~g--k~G~alL~l~p~-El~Fl-r~LK 446 (543)
T KOG0342|consen 423 REG--KEGKALLLLAPW-ELGFL-RYLK 446 (543)
T ss_pred ccC--CCceEEEEeChh-HHHHH-HHHh
Confidence 988 799999999887 55444 3443
No 45
>KOG0343|consensus
Probab=99.96 E-value=2.2e-28 Score=254.02 Aligned_cols=272 Identities=17% Similarity=0.244 Sum_probs=211.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCC--CcccEEEEecccccC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRI--DEIGLIVIDEFHMLN 78 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l--~~i~lvVvDE~H~l~ 78 (693)
||.|.++.|.+.++..++..+.+.||... ........+.+|+||||+++ +..+-+...+ .++.++|+|||+.+.
T Consensus 153 LA~QtFevL~kvgk~h~fSaGLiiGG~~~-k~E~eRi~~mNILVCTPGRL---LQHmde~~~f~t~~lQmLvLDEADR~L 228 (758)
T KOG0343|consen 153 LALQTFEVLNKVGKHHDFSAGLIIGGKDV-KFELERISQMNILVCTPGRL---LQHMDENPNFSTSNLQMLVLDEADRML 228 (758)
T ss_pred HHHHHHHHHHHHhhccccccceeecCchh-HHHHHhhhcCCeEEechHHH---HHHhhhcCCCCCCcceEEEeccHHHHH
Confidence 68999999999999999999999998763 33333348999999999995 5555455555 789999999999999
Q ss_pred CCCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHh-hcCCCccCCC------CcccceeeEEeCceeeeecCCC
Q psy15878 79 EPQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTF-IEGITYVENS------RPTKHSEYVTVDKRVFQSFDGK 150 (693)
Q Consensus 79 d~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~-l~~~~~~~~~------rpv~l~~~~~~~~~~~~~~~~~ 150 (693)
|.+|..+++.|+..+ ++..|.+++|||..+ ..++++. |..+.|.+.. .|..+.++ ++
T Consensus 229 DMGFk~tL~~Ii~~l---P~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~------y~------ 293 (758)
T KOG0343|consen 229 DMGFKKTLNAIIENL---PKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQS------YV------ 293 (758)
T ss_pred HHhHHHHHHHHHHhC---ChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhhe------EE------
Confidence 999999999999876 688899999999874 7777764 2221111110 01111110 00
Q ss_pred CchhhhcccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCC
Q psy15878 151 SLTEIYADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDG 228 (693)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 228 (693)
..+...+.+.+...+. ...+.|||++|.+++..+++.+++ .- | |
T Consensus 294 -----------~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~r--lr-p--------------------g 339 (758)
T KOG0343|consen 294 -----------IVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCR--LR-P--------------------G 339 (758)
T ss_pred -----------EEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHh--cC-C--------------------C
Confidence 0113445566666666 778999999999999999999887 22 1 1
Q ss_pred ccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhh
Q psy15878 229 KLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVG 308 (693)
Q Consensus 229 ~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~G 308 (693)
..+..+||+|++..|..++..|-...--||+||+++++|+|+|++++||..++ |-++.+|+||+|
T Consensus 340 -----------~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DC----Pedv~tYIHRvG 404 (758)
T KOG0343|consen 340 -----------IPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDC----PEDVDTYIHRVG 404 (758)
T ss_pred -----------CceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecC----chhHHHHHHHhh
Confidence 23788999999999999999999999999999999999999999999999986 789999999999
Q ss_pred ccCCCCCCCCCcEEEEecccccHHHHHHHH-hCCCC
Q psy15878 309 RAGRTGLQESGESIMLCKTMQDFLRFSSMM-NAGPE 343 (693)
Q Consensus 309 RaGR~g~d~~G~~i~l~~~~~~~~~~~~~l-~~~~~ 343 (693)
|+.|.+ ..|+++++..++ +.+.+...+ ...++
T Consensus 405 RtAR~~--~~G~sll~L~ps-EeE~~l~~Lq~k~I~ 437 (758)
T KOG0343|consen 405 RTARYK--ERGESLLMLTPS-EEEAMLKKLQKKKIP 437 (758)
T ss_pred hhhccc--CCCceEEEEcch-hHHHHHHHHHHcCCC
Confidence 999988 799999999998 655554444 33343
No 46
>KOG0340|consensus
Probab=99.96 E-value=1.2e-28 Score=244.14 Aligned_cols=272 Identities=16% Similarity=0.213 Sum_probs=205.9
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhc--cCCCCcccEEEEecccccC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQ--ENRIDEIGLIVIDEFHMLN 78 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~--~~~l~~i~lvVvDE~H~l~ 78 (693)
||.|+.+.|.-+++.+++++..+.||+....+.....+++|++|+|||++..++.+-.. ...++++.++|+|||+.+.
T Consensus 87 LA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL 166 (442)
T KOG0340|consen 87 LALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVL 166 (442)
T ss_pred HHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhh
Confidence 57889999999999999999999999987766666668999999999998766655321 2246999999999999999
Q ss_pred CCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcc
Q psy15878 79 EPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYAD 158 (693)
Q Consensus 79 d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (693)
+..+...++.+..-+ +...|.+++|||+.+ .+....+++.-.+. . + .+...++. .....+
T Consensus 167 ~~~f~d~L~~i~e~l---P~~RQtLlfSATitd--~i~ql~~~~i~k~~----a---~------~~e~~~~v--stvetL 226 (442)
T KOG0340|consen 167 AGCFPDILEGIEECL---PKPRQTLLFSATITD--TIKQLFGCPITKSI----A---F------ELEVIDGV--STVETL 226 (442)
T ss_pred ccchhhHHhhhhccC---CCccceEEEEeehhh--HHHHhhcCCccccc----c---e------EEeccCCC--Cchhhh
Confidence 888998988877654 456799999999974 34444444321110 0 0 00000000 000001
Q ss_pred cccc--cCCCCChhhHHHHHh-----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccc
Q psy15878 159 NLDY--SLTGSGPDAVLHLVQ-----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLS 231 (693)
Q Consensus 159 ~~~~--~~~~~~~~~l~~l~~-----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 231 (693)
...| .+...+.-.+..++. +.+.++||+++..+|+.++..|....
T Consensus 227 ~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le---------------------------- 278 (442)
T KOG0340|consen 227 YQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLE---------------------------- 278 (442)
T ss_pred hhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhc----------------------------
Confidence 0000 011122234555555 47899999999999999999887621
Q ss_pred hHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccC
Q psy15878 232 TNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAG 311 (693)
Q Consensus 232 ~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaG 311 (693)
..+..+||.|++.+|-..+..|+++.++||+||+++++|+|||.+..||+++. |.++.+|+||+||+.
T Consensus 279 --------~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~di----Pr~P~~yiHRvGRtA 346 (442)
T KOG0340|consen 279 --------VRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDI----PRDPKDYIHRVGRTA 346 (442)
T ss_pred --------eeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCC----CCCHHHHHHhhcchh
Confidence 34899999999999999999999999999999999999999999999999986 789999999999999
Q ss_pred CCCCCCCCcEEEEecccccHHHHH
Q psy15878 312 RTGLQESGESIMLCKTMQDFLRFS 335 (693)
Q Consensus 312 R~g~d~~G~~i~l~~~~~~~~~~~ 335 (693)
|+| ..|.++-++++. |.+.+.
T Consensus 347 RAG--R~G~aiSivt~r-Dv~l~~ 367 (442)
T KOG0340|consen 347 RAG--RKGMAISIVTQR-DVELLQ 367 (442)
T ss_pred ccc--CCcceEEEechh-hHHHHH
Confidence 999 799999999977 766553
No 47
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.96 E-value=6.2e-28 Score=275.44 Aligned_cols=267 Identities=17% Similarity=0.208 Sum_probs=191.0
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCcccc----ccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKR----QLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~----~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
|+.|++..|+. .|+.+..++|+......... ..+..+|+++|||++.. ..+...-...++++|||||||+
T Consensus 65 L~~dq~~~l~~----~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~--~~~~~~l~~~~l~~iViDEaH~ 138 (591)
T TIGR01389 65 LMKDQVDQLRA----AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQ--DYFLNMLQRIPIALVAVDEAHC 138 (591)
T ss_pred HHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcC--hHHHHHHhcCCCCEEEEeCCcc
Confidence 45677777765 47888888876543222111 12578999999999642 1122222346899999999999
Q ss_pred cCCCC--ChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHHhhcCCC---ccCCCCcccceeeEEeCceeeeecCC
Q psy15878 77 LNEPQ--RGPILECVVSKVLYLKKSIQIFAMSATIGN--INALSTFIEGIT---YVENSRPTKHSEYVTVDKRVFQSFDG 149 (693)
Q Consensus 77 l~d~~--rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~~l~~~~---~~~~~rpv~l~~~~~~~~~~~~~~~~ 149 (693)
+++++ +.+.+..+..... ..++.+++++|||.+. ..++..|++... +...+....+ .|.+..
T Consensus 139 i~~~g~~frp~y~~l~~l~~-~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl---------~~~v~~- 207 (591)
T TIGR01389 139 VSQWGHDFRPEYQRLGSLAE-RFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNL---------RFSVVK- 207 (591)
T ss_pred cccccCccHHHHHHHHHHHH-hCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCc---------EEEEEe-
Confidence 98754 5566655443332 2345569999999875 456788886431 1111111001 111100
Q ss_pred CCchhhhcccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccC
Q psy15878 150 KSLTEIYADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEEND 227 (693)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (693)
.....+.+.+.+. .+.++||||+|++.|+.++..|...+.
T Consensus 208 ---------------~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~----------------------- 249 (591)
T TIGR01389 208 ---------------KNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGI----------------------- 249 (591)
T ss_pred ---------------CCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCC-----------------------
Confidence 1122334555555 568999999999999999999977332
Q ss_pred CccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHh
Q psy15878 228 GKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMV 307 (693)
Q Consensus 228 ~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~ 307 (693)
.+.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+++. |.|..+|.||+
T Consensus 250 -------------~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~----p~s~~~y~Q~~ 312 (591)
T TIGR01389 250 -------------SALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDM----PGNLESYYQEA 312 (591)
T ss_pred -------------CEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCC----CCCHHHHhhhh
Confidence 3889999999999999999999999999999999999999999999999875 77999999999
Q ss_pred hccCCCCCCCCCcEEEEecccccHHHHHHHHhCCC
Q psy15878 308 GRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGP 342 (693)
Q Consensus 308 GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~ 342 (693)
|||||.| ..|.|+++++.. +...+..++....
T Consensus 313 GRaGR~G--~~~~~il~~~~~-d~~~~~~~i~~~~ 344 (591)
T TIGR01389 313 GRAGRDG--LPAEAILLYSPA-DIALLKRRIEQSE 344 (591)
T ss_pred ccccCCC--CCceEEEecCHH-HHHHHHHHHhccC
Confidence 9999999 689999999888 7777777776544
No 48
>KOG0951|consensus
Probab=99.96 E-value=1.4e-28 Score=275.03 Aligned_cols=394 Identities=19% Similarity=0.284 Sum_probs=307.8
Q ss_pred hhHHHHH-HHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCC
Q psy15878 3 HEKYQSL-AKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQ 81 (693)
Q Consensus 3 ~e~~~~l-~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~ 81 (693)
.+++..| +++...+|..+..++|..+ ...+.+...+|+|+|||+|+.+ + ..+.+++.|.||+|+++ ..
T Consensus 1200 ~~~~~~w~~~f~~~~G~~~~~l~ge~s---~~lkl~~~~~vii~tpe~~d~l-q------~iQ~v~l~i~d~lh~ig-g~ 1268 (1674)
T KOG0951|consen 1200 DEQYRDWEKKFSKLLGLRIVKLTGETS---LDLKLLQKGQVIISTPEQWDLL-Q------SIQQVDLFIVDELHLIG-GV 1268 (1674)
T ss_pred HHHHHHHHHhhccccCceEEecCCccc---cchHHhhhcceEEechhHHHHH-h------hhhhcceEeeehhhhhc-cc
Confidence 4455555 5566668999999888654 3344457899999999999765 1 66899999999999999 47
Q ss_pred ChHHHHHHHHHHhcc----CCCceEEEEcCcCCCHHHHHHhhcCC-----CccCCCCcccceeeEEeCceeeeecCCCCc
Q psy15878 82 RGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIEGI-----TYVENSRPTKHSEYVTVDKRVFQSFDGKSL 152 (693)
Q Consensus 82 rg~~le~il~~l~~~----~~~~qii~lSATl~n~~~la~~l~~~-----~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~ 152 (693)
.|+.++.+++ +++. .++++++++|..+.|+.++ +|+. .|..+.||+|+..++..-+..+..
T Consensus 1269 ~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~------ 1338 (1674)
T KOG0951|consen 1269 YGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFE------ 1338 (1674)
T ss_pred CCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh---ccccccceeecCcccCCCceeEEEEEeccchhH------
Confidence 8999998888 6654 3578999999999999988 5543 578899999998777532222110
Q ss_pred hhhhcccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccch
Q psy15878 153 TEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLST 232 (693)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 232 (693)
.+...+ .......+......+++.+||+|+|+.|..+|..+-...+.+ +.+.+-..... .+.
T Consensus 1339 --~~~~am----~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~--------~~~~l~~~~e~----~~~ 1400 (1674)
T KOG0951|consen 1339 --SRMLAM----TKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHAD--------EPDYLLSELEE----CDE 1400 (1674)
T ss_pred --HHHHHh----hhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccC--------cHHHHHHHHhc----chH
Confidence 111110 111222333333388999999999999999998876632221 11111111111 345
Q ss_pred HHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecC--cCCC----ccCCHHHHHHH
Q psy15878 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR----DFISLNMYKQM 306 (693)
Q Consensus 233 ~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~--~~g~----~~~s~~~~~Qr 306 (693)
.|++.+++||+ |-||+..+...+-..|..|.+.|+|...- .+|.-..+.-||+... |+|+ .+++.++..||
T Consensus 1401 ~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m 1477 (1674)
T KOG0951|consen 1401 TLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQM 1477 (1674)
T ss_pred hhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHH
Confidence 78888899999 99999999999999999999999999888 9999999999999864 5565 36899999999
Q ss_pred hhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhh--
Q psy15878 307 VGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ-- 384 (693)
Q Consensus 307 ~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~-- 384 (693)
+|+|.|. |.|++++..+ ++.+|++|+.+++ |++|.| ...|.+.+++.|+.+++.+.+++.+|++|+|+|+
T Consensus 1478 ~G~a~~~-----~k~vi~~~~~-~k~yykkfl~e~l-Pves~l-q~~lhd~~n~ei~~~tienkqd~vd~lt~s~~yrr~ 1549 (1674)
T KOG0951|consen 1478 VGLASGA-----GKCVIMCHTP-KKEYYKKFLYEPL-PVESHL-QHCLHDNFNAEIVTKTIENKQDAVDYLTWSFMYRRL 1549 (1674)
T ss_pred hhhhcCC-----ccEEEEecCc-hHHHHHHhccCcC-chHHHH-HHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 9999884 5899999998 8999999999999 899999 6889999999999999999999999999999999
Q ss_pred ccCchhhhh---------hhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhh
Q psy15878 385 LKSPEDQQT---------FLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHN 451 (693)
Q Consensus 385 ~~~p~~~~~---------~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~ 451 (693)
..||+|+.. ....++++..+..|....+|+.+..+. .+|.+.+.+++++.+...|...+...
T Consensus 1550 ~~np~yy~l~~v~~~~~S~~lS~lvet~l~dl~~s~~i~v~dad~-----~l~~Ias~y~i~y~ti~~f~~~L~~~ 1620 (1674)
T KOG0951|consen 1550 PQNPNYYNLQGVSHRHLSDFLSELVETTLNDLEESKCIEVDDEDD-----SLGMIASYYYISYITIERFSSSLSEK 1620 (1674)
T ss_pred ccCcceecccccchhhhhhHHHHHHHHHHHHhhcCceEEeecccc-----ccchhhhhceeeeEeeehhhhhhhhh
Confidence 689998765 245567788899999999999876553 39999999999999888887777654
No 49
>KOG0336|consensus
Probab=99.96 E-value=6.3e-28 Score=242.24 Aligned_cols=270 Identities=17% Similarity=0.209 Sum_probs=199.3
Q ss_pred hhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCC
Q psy15878 2 VHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQ 81 (693)
Q Consensus 2 ~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~ 81 (693)
+.|.-.+.+++ ..-|++-.+++|+-.+..+.....++.+|+++||++++.|... +.-.+..+.++|+|||+.+.|.+
T Consensus 307 alqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~--n~i~l~siTYlVlDEADrMLDMg 383 (629)
T KOG0336|consen 307 ALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD--NVINLASITYLVLDEADRMLDMG 383 (629)
T ss_pred HHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc--CeeeeeeeEEEEecchhhhhccc
Confidence 33443344444 2357777777877777777777778999999999998766544 44567999999999999999999
Q ss_pred ChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH-hhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhccc
Q psy15878 82 RGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST-FIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADN 159 (693)
Q Consensus 82 rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~-~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (693)
|.+.+..++-.+ +++.|++..|||.|. ...++. |+..+...... ...+...-.+.+.+ .+..
T Consensus 384 FEpqIrkilldi---RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vG-sLdL~a~~sVkQ~i-~v~~----------- 447 (629)
T KOG0336|consen 384 FEPQIRKILLDI---RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVG-SLDLVAVKSVKQNI-IVTT----------- 447 (629)
T ss_pred ccHHHHHHhhhc---CCcceeeeecccCchHHHHHHHHhhhCceEEEec-ccceeeeeeeeeeE-Eecc-----------
Confidence 999988887766 589999999999986 666664 55443211100 00111000111111 1110
Q ss_pred ccccCCCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHH
Q psy15878 160 LDYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEE 236 (693)
Q Consensus 160 ~~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 236 (693)
...+...+..++. ...++||||.++..|..+...|.-.++.
T Consensus 448 -----d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~------------------------------- 491 (629)
T KOG0336|consen 448 -----DSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGIS------------------------------- 491 (629)
T ss_pred -----cHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccc-------------------------------
Confidence 1122233333343 7889999999999888877776653332
Q ss_pred HHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCC
Q psy15878 237 CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQ 316 (693)
Q Consensus 237 ~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d 316 (693)
...+||+-.+.+|+..++.|++|.++|||||+++++|+|+|++++|+++++ |.+..+|.||+||+||.|
T Consensus 492 -----~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDF----P~nIeeYVHRvGrtGRaG-- 560 (629)
T KOG0336|consen 492 -----SQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDF----PRNIEEYVHRVGRTGRAG-- 560 (629)
T ss_pred -----hhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCC----CccHHHHHHHhcccccCC--
Confidence 567899999999999999999999999999999999999999999999998 889999999999999999
Q ss_pred CCCcEEEEecccccHHHHHHHH
Q psy15878 317 ESGESIMLCKTMQDFLRFSSMM 338 (693)
Q Consensus 317 ~~G~~i~l~~~~~~~~~~~~~l 338 (693)
..|.++.+.+.. +......++
T Consensus 561 r~G~sis~lt~~-D~~~a~eLI 581 (629)
T KOG0336|consen 561 RTGTSISFLTRN-DWSMAEELI 581 (629)
T ss_pred CCcceEEEEehh-hHHHHHHHH
Confidence 789999999888 766665544
No 50
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.96 E-value=2.9e-27 Score=266.61 Aligned_cols=339 Identities=19% Similarity=0.177 Sum_probs=217.2
Q ss_pred ChhhHHHHHHHHhhh---hCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEeccccc
Q psy15878 1 MVHEKYQSLAKAAEE---FKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHML 77 (693)
Q Consensus 1 L~~e~~~~l~~~~~~---~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l 77 (693)
||.|....+.+.... .+.+|....|+... +......+..+|+|+|+.. ....++++++||+||||.+
T Consensus 234 La~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr 303 (675)
T PHA02653 234 LVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEH 303 (675)
T ss_pred HHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccC
Confidence 456666666554322 35667788887652 1111112467999999763 1245789999999999988
Q ss_pred CCCCChHHHHHHHHHHhccCCCceEEEEcCcCC-CHHHHHHhhcCCC-ccCCCCc-ccceeeEEeCceeeeecCCCCchh
Q psy15878 78 NEPQRGPILECVVSKVLYLKKSIQIFAMSATIG-NINALSTFIEGIT-YVENSRP-TKHSEYVTVDKRVFQSFDGKSLTE 154 (693)
Q Consensus 78 ~d~~rg~~le~il~~l~~~~~~~qii~lSATl~-n~~~la~~l~~~~-~~~~~rp-v~l~~~~~~~~~~~~~~~~~~~~~ 154 (693)
.. .+..+..++.++. ....|+++||||++ +.+.+.+|++... +....+. .+++++.. ........
T Consensus 304 ~~--~~DllL~llk~~~--~~~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi--------~~~~~~~~ 371 (675)
T PHA02653 304 DQ--IGDIIIAVARKHI--DKIRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYV--------KNKYNPKN 371 (675)
T ss_pred cc--chhHHHHHHHHhh--hhcCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEe--------ecCccccc
Confidence 64 3455544444332 22359999999998 4677888886432 2222221 22222111 00000000
Q ss_pred hhcccccccCCCCChhhHHHHHh-----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCc
Q psy15878 155 IYADNLDYSLTGSGPDAVLHLVQ-----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGK 229 (693)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~l~~-----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (693)
. ..| .......+...+. .++++|||||++.+|+.+++.|.+.. .
T Consensus 372 ~----~~y--~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-~------------------------ 420 (675)
T PHA02653 372 K----RAY--IEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL-P------------------------ 420 (675)
T ss_pred c----hhh--hHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc-C------------------------
Confidence 0 000 0000111222221 45799999999999999999987621 0
Q ss_pred cchHHHHHHhhceEEEcCCCCHHHHHHHHHHH-hCCCCeEEEecchhhcccCCCCcEEEEecCcC-------C-CccCCH
Q psy15878 230 LSTNLEECILYGVAYHHADLTAGERRLIEEAY-LAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV-------G-RDFISL 300 (693)
Q Consensus 230 ~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f-~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~-------g-~~~~s~ 300 (693)
...+..+||+|++. +.+++.| ++|+.+|||||+++|+|||+|++++||+++.. | ..|+|.
T Consensus 421 ---------~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSk 489 (675)
T PHA02653 421 ---------IYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISK 489 (675)
T ss_pred ---------CceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCH
Confidence 02388999999975 4555666 78999999999999999999999999998621 1 125799
Q ss_pred HHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHh
Q psy15878 301 NMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHT 380 (693)
Q Consensus 301 ~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t 380 (693)
++|.||+|||||.+ +|.|+.++++. +. . |+ .....+.|...+|.+.++|. ...++ +
T Consensus 490 asa~QRaGRAGR~~---~G~c~rLyt~~-~~---~--------pI-~ri~~~~L~~~vL~lk~~g~-~~~~~---~---- 545 (675)
T PHA02653 490 SMRTQRKGRVGRVS---PGTYVYFYDLD-LL---K--------PI-KRIDSEFLHNYILYAKYFNL-TLPED---L---- 545 (675)
T ss_pred HHHHHhccCcCCCC---CCeEEEEECHH-Hh---H--------HH-HHHhHHHHHHHHHHHHHcCC-CCccc---c----
Confidence 99999999999996 89999999887 32 1 11 11102458889999888886 22221 1
Q ss_pred hhhhccCchhhhhhhhhhHHHHHHHHHhhcCCeEeeccCccEEecHH--HHHHHHcCCChhHHHHHHHhh
Q psy15878 381 LFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSI--AKAAVQAGLSHDVCLIIYSDL 448 (693)
Q Consensus 381 ~~~~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~l--G~~~~~~~l~~~~~~~~~~~l 448 (693)
|+.. +..+.+..+++.|...|+.+. ++|.+ |+.++.. +.++.++...
T Consensus 546 ~ldp----------P~~~~l~~A~~~L~~lga~~~-------~l~~l~~~~~~~~~----~~~k~~~~g~ 594 (675)
T PHA02653 546 FVIP----------SNLDRLRKTEEYIDSFNISIE-------KWYEILSNYYVNML----EYAKIYVKGG 594 (675)
T ss_pred cCCC----------CCHHHHHHHHHHHHHcCCCch-------hhhhhhccccHHHH----HHhHHHhccc
Confidence 2222 234568899999999997652 58899 8888776 6666665543
No 51
>KOG0339|consensus
Probab=99.96 E-value=7.3e-28 Score=247.73 Aligned_cols=269 Identities=17% Similarity=0.280 Sum_probs=211.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|++.+.++|++..|+++..++||.+...+.+.+..++.||||||+++..++.. ..-.+.+++++|+||++.+.+.
T Consensus 308 la~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm--Katn~~rvS~LV~DEadrmfdm 385 (731)
T KOG0339|consen 308 LASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM--KATNLSRVSYLVLDEADRMFDM 385 (731)
T ss_pred HHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh--hcccceeeeEEEEechhhhhcc
Confidence 58899999999999999999999999887777777668999999999997766653 4557899999999999999999
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH-hhcCCCccCCCCccccee---eEEeCceeeeecCCCCchhh
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST-FIEGITYVENSRPTKHSE---YVTVDKRVFQSFDGKSLTEI 155 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~-~l~~~~~~~~~rpv~l~~---~~~~~~~~~~~~~~~~~~~~ 155 (693)
++-+.+..|...+ +++.|.+++|||++. ++.+++ +|.. ..|-|.... .-.+.+.++.+++
T Consensus 386 Gfe~qVrSI~~hi---rpdrQtllFsaTf~~kIe~lard~L~d-----pVrvVqg~vgean~dITQ~V~V~~s------- 450 (731)
T KOG0339|consen 386 GFEPQVRSIKQHI---RPDRQTLLFSATFKKKIEKLARDILSD-----PVRVVQGEVGEANEDITQTVSVCPS------- 450 (731)
T ss_pred ccHHHHHHHHhhc---CCcceEEEeeccchHHHHHHHHHHhcC-----CeeEEEeehhccccchhheeeeccC-------
Confidence 9999999998877 488999999999974 555553 4433 122111110 0011111211111
Q ss_pred hcccccccCCCCChhh-HHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccch
Q psy15878 156 YADNLDYSLTGSGPDA-VLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLST 232 (693)
Q Consensus 156 ~~~~~~~~~~~~~~~~-l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 232 (693)
...+... +.+|.. ..+++|||+..+..++.++..|..+++
T Consensus 451 ---------~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~---------------------------- 493 (731)
T KOG0339|consen 451 ---------EEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGF---------------------------- 493 (731)
T ss_pred ---------cHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccc----------------------------
Confidence 1112222 233333 778999999999999999999876433
Q ss_pred HHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCC
Q psy15878 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGR 312 (693)
Q Consensus 233 ~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR 312 (693)
.|..+||++.+.+|.+++..|+.+...|+|+|+++++|+|+|.+.-||++++ ..+...|.||+||.||
T Consensus 494 --------~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~----ardIdththrigrtgR 561 (731)
T KOG0339|consen 494 --------NVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDF----ARDIDTHTHRIGRTGR 561 (731)
T ss_pred --------eeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccc----cchhHHHHHHhhhccc
Confidence 3999999999999999999999999999999999999999999999999986 4589999999999999
Q ss_pred CCCCCCCcEEEEecccccHHHHHHHH
Q psy15878 313 TGLQESGESIMLCKTMQDFLRFSSMM 338 (693)
Q Consensus 313 ~g~d~~G~~i~l~~~~~~~~~~~~~l 338 (693)
.| ..|.+|.++++. +.+..-.++
T Consensus 562 ag--~kGvayTlvTeK-Da~fAG~LV 584 (731)
T KOG0339|consen 562 AG--EKGVAYTLVTEK-DAEFAGHLV 584 (731)
T ss_pred cc--ccceeeEEechh-hHHHhhHHH
Confidence 99 679999999998 776554443
No 52
>KOG0335|consensus
Probab=99.95 E-value=1.1e-27 Score=251.53 Aligned_cols=267 Identities=18% Similarity=0.183 Sum_probs=201.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC-
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE- 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d- 79 (693)
||.|.|.+-+++....++++...+|+.....+.....+++||+||||+++..++.. ..-.+++++++|+|||+.+.|
T Consensus 164 L~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~--g~i~l~~~k~~vLDEADrMlD~ 241 (482)
T KOG0335|consen 164 LVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER--GKISLDNCKFLVLDEADRMLDE 241 (482)
T ss_pred HhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc--ceeehhhCcEEEecchHHhhhh
Confidence 68899999999998899999999998665555555568999999999998766654 444679999999999998888
Q ss_pred CCChHHHHHHHHHHhccC-CCceEEEEcCcCCC-HHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhc
Q psy15878 80 PQRGPILECVVSKVLYLK-KSIQIFAMSATIGN-INALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYA 157 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~-~~~qii~lSATl~n-~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (693)
..|++.+..++......+ ...|.+++|||.|. ...++..+-.+ ++--+.+. .+ .. ......+.
T Consensus 242 mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~----~yi~laV~--------rv--g~-~~~ni~q~ 306 (482)
T KOG0335|consen 242 MGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKD----NYIFLAVG--------RV--GS-TSENITQK 306 (482)
T ss_pred ccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhc----cceEEEEe--------ee--cc-ccccceeE
Confidence 889999999998764322 36799999999983 44443322111 11000000 00 00 00000000
Q ss_pred ccccccCCCCChhhHHHHHh------cCC-----ceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhcc
Q psy15878 158 DNLDYSLTGSGPDAVLHLVQ------GNL-----MVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEEN 226 (693)
Q Consensus 158 ~~~~~~~~~~~~~~l~~l~~------~~~-----~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (693)
..|.....+.+.+.+++. ..+ .++|||.|++.|..++..|...++.
T Consensus 307 --i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~--------------------- 363 (482)
T KOG0335|consen 307 --ILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYP--------------------- 363 (482)
T ss_pred --eeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCC---------------------
Confidence 001112234455556655 123 7999999999999999999884443
Q ss_pred CCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHH
Q psy15878 227 DGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQM 306 (693)
Q Consensus 227 ~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr 306 (693)
.-..||..++.+|...++.|++|...|+|||+++++|+|+|++++||+++. |-+..+|+||
T Consensus 364 ---------------~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDm----P~d~d~YvHR 424 (482)
T KOG0335|consen 364 ---------------AKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDM----PADIDDYVHR 424 (482)
T ss_pred ---------------ceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeec----CcchhhHHHh
Confidence 677999999999999999999999999999999999999999999999986 6679999999
Q ss_pred hhccCCCCCCCCCcEEEEeccc
Q psy15878 307 VGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 307 ~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
+||+||.| ..|.++.|++..
T Consensus 425 IGRTGR~G--n~G~atsf~n~~ 444 (482)
T KOG0335|consen 425 IGRTGRVG--NGGRATSFFNEK 444 (482)
T ss_pred ccccccCC--CCceeEEEeccc
Confidence 99999999 799999999855
No 53
>KOG0345|consensus
Probab=99.95 E-value=3.4e-27 Score=241.64 Aligned_cols=276 Identities=14% Similarity=0.157 Sum_probs=202.7
Q ss_pred ChhhHHHHHHHHhhh-hCcEEEEeeccCCCCCcccccc-CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccC
Q psy15878 1 MVHEKYQSLAKAAEE-FKFYLEEYAGVKGQYPPTKRQL-NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLN 78 (693)
Q Consensus 1 L~~e~~~~l~~~~~~-~~~~v~~~~G~~~~~~~~~~~~-~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~ 78 (693)
|+.|+.+..+.|... ..+++..+.||..-........ ++++|+|+||+++..++.+-...-.++++.++|+|||+.+.
T Consensus 91 La~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLl 170 (567)
T KOG0345|consen 91 LARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLL 170 (567)
T ss_pred HHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHh
Confidence 578888888888777 6788999999865444433322 67899999999988777662222235699999999999999
Q ss_pred CCCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHh-hcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhh
Q psy15878 79 EPQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTF-IEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIY 156 (693)
Q Consensus 79 d~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~-l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 156 (693)
|.+|-..+..|++.+ +++.+.=++|||..+ .+++... |.. |+.+..... . ......+
T Consensus 171 dmgFe~~~n~ILs~L---PKQRRTGLFSATq~~~v~dL~raGLRN--------pv~V~V~~k--~--------~~~tPS~ 229 (567)
T KOG0345|consen 171 DMGFEASVNTILSFL---PKQRRTGLFSATQTQEVEDLARAGLRN--------PVRVSVKEK--S--------KSATPSS 229 (567)
T ss_pred cccHHHHHHHHHHhc---ccccccccccchhhHHHHHHHHhhccC--------ceeeeeccc--c--------cccCchh
Confidence 999999999999886 677788899999864 4444432 221 222211100 0 0000000
Q ss_pred -cccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchH
Q psy15878 157 -ADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTN 233 (693)
Q Consensus 157 -~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (693)
...+.......+...+.+++. ..+++|||.+|-..++.....+.. ..
T Consensus 230 L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~--~l---------------------------- 279 (567)
T KOG0345|consen 230 LALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSR--LL---------------------------- 279 (567)
T ss_pred hcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHH--Hh----------------------------
Confidence 000000012223344556665 679999999999999998888776 22
Q ss_pred HHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCC
Q psy15878 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRT 313 (693)
Q Consensus 234 L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~ 313 (693)
....+...||.|++..|..+++.|++-.-.|++||+++++|+|+|+++.||+++. |.+++.|.||+||+||.
T Consensus 280 ----~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~Dp----P~~~~~FvHR~GRTaR~ 351 (567)
T KOG0345|consen 280 ----KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDP----PKDPSSFVHRCGRTARA 351 (567)
T ss_pred ----CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCC----CCChhHHHhhcchhhhc
Confidence 1134889999999999999999999988899999999999999999999999984 88999999999999999
Q ss_pred CCCCCCcEEEEecccccHHHHHHHHh
Q psy15878 314 GLQESGESIMLCKTMQDFLRFSSMMN 339 (693)
Q Consensus 314 g~d~~G~~i~l~~~~~~~~~~~~~l~ 339 (693)
| ..|.++++..+. +..++ .++.
T Consensus 352 g--r~G~Aivfl~p~-E~aYv-eFl~ 373 (567)
T KOG0345|consen 352 G--REGNAIVFLNPR-EEAYV-EFLR 373 (567)
T ss_pred c--CccceEEEeccc-HHHHH-HHHH
Confidence 9 799999999886 55444 4443
No 54
>PRK13766 Hef nuclease; Provisional
Probab=99.95 E-value=3.2e-26 Score=270.17 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=94.3
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEE--------cCCC
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYH--------HADL 249 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~--------h~~l 249 (693)
++.++||||++++.|+.+++.|...+.. +..+ |++|
T Consensus 364 ~~~kvlIF~~~~~t~~~L~~~L~~~~~~------------------------------------~~~~~g~~~~~~~~~~ 407 (773)
T PRK13766 364 PDSRIIVFTQYRDTAEKIVDLLEKEGIK------------------------------------AVRFVGQASKDGDKGM 407 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHhCCCc------------------------------------eEEEEccccccccCCC
Confidence 6789999999999999999999663322 2333 3469
Q ss_pred CHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 250 TAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 250 ~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
++.+|..+.+.|++|..+|||||+++++|+|+|.+++||+++. +.+...|+||+||+||.| .|.+++++.+.
T Consensus 408 ~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~----~~s~~r~iQR~GR~gR~~---~~~v~~l~~~~ 479 (773)
T PRK13766 408 SQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEP----VPSEIRSIQRKGRTGRQE---EGRVVVLIAKG 479 (773)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCC----CCCHHHHHHHhcccCcCC---CCEEEEEEeCC
Confidence 9999999999999999999999999999999999999999874 678999999999999998 68999988765
No 55
>KOG0332|consensus
Probab=99.94 E-value=3.9e-26 Score=227.61 Aligned_cols=270 Identities=17% Similarity=0.174 Sum_probs=191.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|..+-+.+.++..++++....-+. ..+.-. .-..+|+|+||+.+..+..++ ..-.++.+.++|+|||+.+.+.
T Consensus 172 LA~Q~~eVv~eMGKf~~ita~yair~s-k~~rG~--~i~eqIviGTPGtv~Dlm~kl-k~id~~kikvfVlDEAD~Mi~t 247 (477)
T KOG0332|consen 172 LAPQTGEVVEEMGKFTELTASYAIRGS-KAKRGN--KLTEQIVIGTPGTVLDLMLKL-KCIDLEKIKVFVLDEADVMIDT 247 (477)
T ss_pred HHHHHHHHHHHhcCceeeeEEEEecCc-ccccCC--cchhheeeCCCccHHHHHHHH-HhhChhhceEEEecchhhhhhc
Confidence 577888888998887777776644332 111111 124689999999987766654 2335689999999999976652
Q ss_pred -CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcc
Q psy15878 81 -QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYAD 158 (693)
Q Consensus 81 -~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (693)
+++.+--.+ .+..+++.|++.+|||..+ ...|+.- +..+..++.++.. .-.+.....+
T Consensus 248 qG~~D~S~rI---~~~lP~~~QllLFSATf~e~V~~Fa~k-----ivpn~n~i~Lk~e------------el~L~~IkQl 307 (477)
T KOG0332|consen 248 QGFQDQSIRI---MRSLPRNQQLLLFSATFVEKVAAFALK-----IVPNANVIILKRE------------ELALDNIKQL 307 (477)
T ss_pred ccccccchhh---hhhcCCcceEEeeechhHHHHHHHHHH-----hcCCCceeeeehh------------hccccchhhh
Confidence 234433222 2234678999999999864 3333322 2223333332210 0001111111
Q ss_pred cccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHH
Q psy15878 159 NLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEE 236 (693)
Q Consensus 159 ~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 236 (693)
...+.....+.+.+.++.. .-++.||||.|++.+..++..+...|+-
T Consensus 308 yv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~------------------------------- 356 (477)
T KOG0332|consen 308 YVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQ------------------------------- 356 (477)
T ss_pred eeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCce-------------------------------
Confidence 1222234556677777766 7789999999999999999999986654
Q ss_pred HHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCC--CccCCHHHHHHHhhccCCCC
Q psy15878 237 CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVG--RDFISLNMYKQMVGRAGRTG 314 (693)
Q Consensus 237 ~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g--~~~~s~~~~~Qr~GRaGR~g 314 (693)
|..+||.|+.++|..+.+.||+|.-+|||+|+++++|||++.+++||+++.+- ....+...|+||+||+||.|
T Consensus 357 -----V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFG 431 (477)
T KOG0332|consen 357 -----VSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFG 431 (477)
T ss_pred -----eEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999987421 12358899999999999999
Q ss_pred CCCCCcEEEEecccccHH
Q psy15878 315 LQESGESIMLCKTMQDFL 332 (693)
Q Consensus 315 ~d~~G~~i~l~~~~~~~~ 332 (693)
..|.++-+++..+..+
T Consensus 432 --kkG~a~n~v~~~~s~~ 447 (477)
T KOG0332|consen 432 --KKGLAINLVDDKDSMN 447 (477)
T ss_pred --ccceEEEeecccCcHH
Confidence 7999999998874443
No 56
>KOG0347|consensus
Probab=99.94 E-value=4.7e-27 Score=244.24 Aligned_cols=291 Identities=16% Similarity=0.140 Sum_probs=202.2
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchh-ccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLI-QENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~-~~~~l~~i~lvVvDE~H~l~d 79 (693)
||-|..++|...+...+++|..++||.....+.......++|+|+||+++..|+..-- ..+.+++++|+|+||++.+.+
T Consensus 275 La~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmve 354 (731)
T KOG0347|consen 275 LAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVE 354 (731)
T ss_pred HHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhh
Confidence 6789999999999999999999999987555554444689999999999988886532 245679999999999999998
Q ss_pred CCChHHHHHHHHHHhc--cCCCceEEEEcCcCCCH--HHHHHhhcCCCccCCCCcccce---e--eEEeCceeeeecCCC
Q psy15878 80 PQRGPILECVVSKVLY--LKKSIQIFAMSATIGNI--NALSTFIEGITYVENSRPTKHS---E--YVTVDKRVFQSFDGK 150 (693)
Q Consensus 80 ~~rg~~le~il~~l~~--~~~~~qii~lSATl~n~--~~la~~l~~~~~~~~~rpv~l~---~--~~~~~~~~~~~~~~~ 150 (693)
.+.-..+..++..+.. .+...|.+.+|||+.-. ..+..--....-..+. ..+++ . ++.-...+....+..
T Consensus 355 kghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~-~~kiq~Lmk~ig~~~kpkiiD~t~q~ 433 (731)
T KOG0347|consen 355 KGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDEL-NAKIQHLMKKIGFRGKPKIIDLTPQS 433 (731)
T ss_pred hccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhh-hHHHHHHHHHhCccCCCeeEecCcch
Confidence 7877788888888762 23567999999998521 1111000000000000 00000 0 000001112211111
Q ss_pred Cch--h-hhcccccccCCCCChhhHHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhcc
Q psy15878 151 SLT--E-IYADNLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEEN 226 (693)
Q Consensus 151 ~~~--~-~~~~~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (693)
... . ...+. +...+.+. .+..++. -.+++|||||+...+.+++-.|..-++
T Consensus 434 ~ta~~l~Es~I~--C~~~eKD~-ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i---------------------- 488 (731)
T KOG0347|consen 434 ATASTLTESLIE--CPPLEKDL-YLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDI---------------------- 488 (731)
T ss_pred hHHHHHHHHhhc--CCccccce-eEEEEEeecCCceEEEechHHHHHHHHHHHhhcCC----------------------
Confidence 000 0 00000 01111111 1111122 678999999999999999998876222
Q ss_pred CCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHH
Q psy15878 227 DGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQM 306 (693)
Q Consensus 227 ~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr 306 (693)
....+|+.|.+.+|-..++.|++..-.||+||+++++|+|||.+.+||+|.. |.+..-|+||
T Consensus 489 --------------~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqV----PrtseiYVHR 550 (731)
T KOG0347|consen 489 --------------PPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQV----PRTSEIYVHR 550 (731)
T ss_pred --------------CCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeec----CCccceeEec
Confidence 2567899999999999999999999999999999999999999999999974 7788999999
Q ss_pred hhccCCCCCCCCCcEEEEecccccHHHHHHHH
Q psy15878 307 VGRAGRTGLQESGESIMLCKTMQDFLRFSSMM 338 (693)
Q Consensus 307 ~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l 338 (693)
.||+.|++ ..|.++++|.+. +...|.++.
T Consensus 551 SGRTARA~--~~Gvsvml~~P~-e~~~~~KL~ 579 (731)
T KOG0347|consen 551 SGRTARAN--SEGVSVMLCGPQ-EVGPLKKLC 579 (731)
T ss_pred cccccccc--CCCeEEEEeChH-HhHHHHHHH
Confidence 99999999 689999999998 766665554
No 57
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.2e-25 Score=244.63 Aligned_cols=269 Identities=17% Similarity=0.213 Sum_probs=194.5
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccc----cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQ----LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~----~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
|++.+++.++.. |+++..+.+.....+....+ ....+++.-+||++.. ....+.-.--.++++||||||+
T Consensus 69 LM~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~--~~f~~~L~~~~i~l~vIDEAHC 142 (590)
T COG0514 69 LMKDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMS--PRFLELLKRLPISLVAIDEAHC 142 (590)
T ss_pred HHHHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcC--hHHHHHHHhCCCceEEechHHH
Confidence 466777777654 67888777765433332221 2458999999999642 1111111136789999999999
Q ss_pred cCCCC--ChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHHhhcCC---CccCC-CCcccceeeEEeCceeeeecC
Q psy15878 77 LNEPQ--RGPILECVVSKVLYLKKSIQIFAMSATIGN--INALSTFIEGI---TYVEN-SRPTKHSEYVTVDKRVFQSFD 148 (693)
Q Consensus 77 l~d~~--rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~~l~~~---~~~~~-~rpv~l~~~~~~~~~~~~~~~ 148 (693)
+++|+ |.+.+..+-..... -+++.++++|||-+. .+++.+-|+.. .|..+ .||. -.|.+..
T Consensus 143 iSqWGhdFRP~Y~~lg~l~~~-~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpN----------i~~~v~~ 211 (590)
T COG0514 143 ISQWGHDFRPDYRRLGRLRAG-LPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPN----------LALKVVE 211 (590)
T ss_pred HhhcCCccCHhHHHHHHHHhh-CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCch----------hhhhhhh
Confidence 99886 88888876554443 348899999999875 56677766543 12111 1111 0111100
Q ss_pred CCCchhhhcccccccCCCCChhhHHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccC
Q psy15878 149 GKSLTEIYADNLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEEND 227 (693)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (693)
.. +...+...+.+... ..++.||||.||+.||.+|+.|...+..
T Consensus 212 ~~-------------~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~---------------------- 256 (590)
T COG0514 212 KG-------------EPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGIS---------------------- 256 (590)
T ss_pred cc-------------cHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCc----------------------
Confidence 00 00011112222122 6777999999999999999999984433
Q ss_pred CccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHh
Q psy15878 228 GKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMV 307 (693)
Q Consensus 228 ~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~ 307 (693)
++++||||+.++|..++++|..+.++|+|||..+.+|||-|+++.||+++. |-|..+|.|-+
T Consensus 257 --------------a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l----P~s~EsYyQE~ 318 (590)
T COG0514 257 --------------AGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL----PGSIESYYQET 318 (590)
T ss_pred --------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC----CCCHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999986 77999999999
Q ss_pred hccCCCCCCCCCcEEEEecccccHHHHHHHHhCCC
Q psy15878 308 GRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGP 342 (693)
Q Consensus 308 GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~ 342 (693)
|||||.| .+.+|++++.+. |......++....
T Consensus 319 GRAGRDG--~~a~aill~~~~-D~~~~~~~i~~~~ 350 (590)
T COG0514 319 GRAGRDG--LPAEAILLYSPE-DIRWQRYLIEQSK 350 (590)
T ss_pred hhccCCC--CcceEEEeeccc-cHHHHHHHHHhhc
Confidence 9999999 699999999998 8777777766544
No 58
>KOG0341|consensus
Probab=99.93 E-value=2.8e-26 Score=228.98 Aligned_cols=264 Identities=15% Similarity=0.177 Sum_probs=194.8
Q ss_pred ChhhHHHHHHHHhhhh------CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecc
Q psy15878 1 MVHEKYQSLAKAAEEF------KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEF 74 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~------~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~ 74 (693)
||.|.+.-+..++..+ .++.....||..-.++.+...++.||+|+||+++..++.+ ..-.++-+.++.+|||
T Consensus 258 LArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K--K~~sLd~CRyL~lDEA 335 (610)
T KOG0341|consen 258 LARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK--KIMSLDACRYLTLDEA 335 (610)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH--hhccHHHHHHhhhhhH
Confidence 3555555554443322 3456666788766666665568899999999998877765 3346688899999999
Q ss_pred cccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchh
Q psy15878 75 HMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTE 154 (693)
Q Consensus 75 H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 154 (693)
+.+.|.+|...+..+...++ ...|.+++|||+|. .+..|-...+ ..||.+... ..+....
T Consensus 336 DRmiDmGFEddir~iF~~FK---~QRQTLLFSATMP~--KIQ~FAkSAL----VKPvtvNVG-----------RAGAAsl 395 (610)
T KOG0341|consen 336 DRMIDMGFEDDIRTIFSFFK---GQRQTLLFSATMPK--KIQNFAKSAL----VKPVTVNVG-----------RAGAASL 395 (610)
T ss_pred HHHhhccchhhHHHHHHHHh---hhhheeeeeccccH--HHHHHHHhhc----ccceEEecc-----------cccccch
Confidence 99999999999988888775 67799999999984 3333332222 223332211 1111111
Q ss_pred hhcccccccCCCCChhhHHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchH
Q psy15878 155 IYADNLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTN 233 (693)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (693)
.......|.+...+.-.+.+.++ ...+|||||..+.++..+.++|.-.|.-
T Consensus 396 dViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVE---------------------------- 447 (610)
T KOG0341|consen 396 DVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVE---------------------------- 447 (610)
T ss_pred hHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccce----------------------------
Confidence 11111122223334444555555 6789999999999999999988653322
Q ss_pred HHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCC
Q psy15878 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRT 313 (693)
Q Consensus 234 L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~ 313 (693)
+...|||-.+++|....++|+.|+-+|||||++++.|+|+|++.+||+++. |-...+|.||+||+||.
T Consensus 448 --------avaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDM----P~eIENYVHRIGRTGRs 515 (610)
T KOG0341|consen 448 --------AVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDM----PEEIENYVHRIGRTGRS 515 (610)
T ss_pred --------eEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCC----hHHHHHHHHHhcccCCC
Confidence 678999999999999999999999999999999999999999999999986 66899999999999999
Q ss_pred CCCCCCcEEEEeccc
Q psy15878 314 GLQESGESIMLCKTM 328 (693)
Q Consensus 314 g~d~~G~~i~l~~~~ 328 (693)
| ..|.+..|++..
T Consensus 516 g--~~GiATTfINK~ 528 (610)
T KOG0341|consen 516 G--KTGIATTFINKN 528 (610)
T ss_pred C--Ccceeeeeeccc
Confidence 9 789999999877
No 59
>KOG0920|consensus
Probab=99.93 E-value=5.5e-26 Score=256.60 Aligned_cols=345 Identities=17% Similarity=0.203 Sum_probs=239.5
Q ss_pred CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHH
Q psy15878 38 NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALST 117 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~ 117 (693)
....+.+||.+. |++.+.....+..+++||+||+|..+- -...+..++..+...+++.++|+||||+ |++.|..
T Consensus 263 ~~t~L~fcTtGv---LLr~L~~~~~l~~vthiivDEVHER~i--~~DflLi~lk~lL~~~p~LkvILMSAT~-dae~fs~ 336 (924)
T KOG0920|consen 263 RETRLLFCTTGV---LLRRLQSDPTLSGVTHIIVDEVHERSI--NTDFLLILLKDLLPRNPDLKVILMSATL-DAELFSD 336 (924)
T ss_pred CceeEEEecHHH---HHHHhccCcccccCceeeeeeEEEccC--CcccHHHHHHHHhhhCCCceEEEeeeec-chHHHHH
Confidence 347899999997 578777788899999999999997753 2334555566666667899999999999 6899999
Q ss_pred hhcC-CCccCCCCcccceeeEEe---CceeeeecCCCCc-hhhhc----ccccccCCCCChhhHHHHHh------cCCce
Q psy15878 118 FIEG-ITYVENSRPTKHSEYVTV---DKRVFQSFDGKSL-TEIYA----DNLDYSLTGSGPDAVLHLVQ------GNLMV 182 (693)
Q Consensus 118 ~l~~-~~~~~~~rpv~l~~~~~~---~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~l~~l~~------~~~~v 182 (693)
|++. +++....|..|+.+++.- ....|........ ...+. .....-....+.+.+..++. ..+.+
T Consensus 337 YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaI 416 (924)
T KOG0920|consen 337 YFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAI 416 (924)
T ss_pred HhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceE
Confidence 9875 345555666665543210 0001111110000 00000 00000012245666767666 57899
Q ss_pred EEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHh
Q psy15878 183 LIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYL 262 (693)
Q Consensus 183 LVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~ 262 (693)
|||.|+..++..+...|..+....+ . ...-+.+.|+.|+..+++.|+....
T Consensus 417 LVFLPG~~eI~~~~~~L~~~~~f~~-------------------------~----~~~~ilplHs~~~s~eQ~~VF~~pp 467 (924)
T KOG0920|consen 417 LVFLPGWEEILQLKELLEVNLPFAD-------------------------S----LKFAILPLHSSIPSEEQQAVFKRPP 467 (924)
T ss_pred EEEcCCHHHHHHHHHHhhhcccccc-------------------------c----cceEEEeccccCChHHHHHhcCCCC
Confidence 9999999999999999976332200 0 0123888999999999999999999
Q ss_pred CCCCeEEEecchhhcccCCCCcEEEEecCc------CCC--------ccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 263 AGTLQIICCTSTLAAGVNLPAQRVIIRDSY------VGR--------DFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 263 ~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~------~g~--------~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
.|..+||+||++++.+|+||++.+||+.+. +.. .|+|.++..||.|||||.. +|.||.+++..
T Consensus 468 ~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~---~G~cy~L~~~~ 544 (924)
T KOG0920|consen 468 KGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR---PGICYHLYTRS 544 (924)
T ss_pred CCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc---CCeeEEeechh
Confidence 999999999999999999999999999632 111 3689999999999999998 99999999887
Q ss_pred ccHHHHHHHHh-CCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhhhhhhhHHHHHHHHH
Q psy15878 329 QDFLRFSSMMN-AGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLL 407 (693)
Q Consensus 329 ~~~~~~~~~l~-~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~~~~~~~~~~~l~~L 407 (693)
.+.++.. .+.|. .- ...+.+..|+.-.+ ...++.+|+...+-. | ....+..++..|
T Consensus 545 ----~~~~~~~~~q~PE-il---R~pL~~l~L~iK~l----~~~~~~~fLskaldp----P-------~~~~v~~a~~~L 601 (924)
T KOG0920|consen 545 ----RYEKLMLAYQLPE-IL---RTPLEELCLHIKVL----EQGSIKAFLSKALDP----P-------PADAVDLAIERL 601 (924)
T ss_pred ----hhhhcccccCChH-HH---hChHHHhhheeeec----cCCCHHHHHHHhcCC----C-------ChHHHHHHHHHH
Confidence 3444433 22211 11 12445555554332 233344565544322 2 345678899999
Q ss_pred hhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhh
Q psy15878 408 ASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDL 448 (693)
Q Consensus 408 ~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l 448 (693)
.+.|+++.++ .+|+||+.++++|+++..+++++-..
T Consensus 602 ~~igaL~~~e-----~LT~LG~~la~lPvd~~igK~ll~g~ 637 (924)
T KOG0920|consen 602 KQIGALDESE-----ELTPLGLHLASLPVDVRIGKLLLFGA 637 (924)
T ss_pred HHhccccCcc-----cchHHHHHHHhCCCccccchhheehh
Confidence 9999999653 79999999999999999999987543
No 60
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.2e-25 Score=231.93 Aligned_cols=291 Identities=17% Similarity=0.198 Sum_probs=192.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchh-ccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLI-QENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~-~~~~l~~i~lvVvDE~H~l~d 79 (693)
||.|+...+.++..-..-.+..++|..........| .+.+|+|+||+... |.+. +.-.+.+++|+||||||.-..
T Consensus 70 LV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvve---NDl~~Grid~~dv~~lifDEAHRAvG 145 (542)
T COG1111 70 LVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELW-AKKKVFVATPQVVE---NDLKAGRIDLDDVSLLIFDEAHRAVG 145 (542)
T ss_pred HHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHH-hhCCEEEeccHHHH---hHHhcCccChHHceEEEechhhhccC
Confidence 688999999998655555788999987766666677 88999999999853 4444 444679999999999998653
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCCC----HHHHHHhhcCCCc------cCCCCc-----------ccceeeEE
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIGN----INALSTFIEGITY------VENSRP-----------TKHSEYVT 138 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~n----~~~la~~l~~~~~------~~~~rp-----------v~l~~~~~ 138 (693)
++ .+-.+.........++.++|||||+++ ..++.+-|+.+.+ +.+.+| |++...+.
T Consensus 146 -ny--AYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~ 222 (542)
T COG1111 146 -NY--AYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIK 222 (542)
T ss_pred -cc--hHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHH
Confidence 22 222344444445678899999999985 4455566665411 111222 11110000
Q ss_pred -e----------------CceeeeecC---CCCchhhh--------ccccc-----------------------------
Q psy15878 139 -V----------------DKRVFQSFD---GKSLTEIY--------ADNLD----------------------------- 161 (693)
Q Consensus 139 -~----------------~~~~~~~~~---~~~~~~~~--------~~~~~----------------------------- 161 (693)
+ ...++.... ..++...+ ..+..
T Consensus 223 ~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~ 302 (542)
T COG1111 223 EIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPF 302 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence 0 000000000 00000000 00000
Q ss_pred --c--------------------------------------cCCCCChhhHHHHHh------cCCceEEEeCChHHHHHH
Q psy15878 162 --Y--------------------------------------SLTGSGPDAVLHLVQ------GNLMVLIFCSSKIACSNL 195 (693)
Q Consensus 162 --~--------------------------------------~~~~~~~~~l~~l~~------~~~~vLVF~~sr~~~e~l 195 (693)
| ...+.+.+.+.+++. ++.++|||++.|..++.+
T Consensus 303 ~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i 382 (542)
T COG1111 303 YQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEI 382 (542)
T ss_pred HHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHH
Confidence 0 002344455555555 667999999999999999
Q ss_pred HHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchh
Q psy15878 196 ALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTL 275 (693)
Q Consensus 196 a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l 275 (693)
...|.+.+.. .. ..++..+-.-+..||++.++.++.+.|++|..+||||||+.
T Consensus 383 ~~~L~~~~~~-~~--------------------------~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVg 435 (542)
T COG1111 383 VNFLKKIGIK-AR--------------------------VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVG 435 (542)
T ss_pred HHHHHhcCCc-ce--------------------------eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccc
Confidence 9999883322 00 00111112224579999999999999999999999999999
Q ss_pred hcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHH
Q psy15878 276 AAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR 333 (693)
Q Consensus 276 ~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~ 333 (693)
++|+|+|.+++||.+.. -.|...++||.||+||.. .|.+|+++.++ ..++
T Consensus 436 EEGLDIp~vDlVifYEp----vpSeIR~IQR~GRTGR~r---~Grv~vLvt~g-trde 485 (542)
T COG1111 436 EEGLDIPEVDLVIFYEP----VPSEIRSIQRKGRTGRKR---KGRVVVLVTEG-TRDE 485 (542)
T ss_pred cccCCCCcccEEEEecC----CcHHHHHHHhhCccccCC---CCeEEEEEecC-chHH
Confidence 99999999999999863 246779999999999997 99999999877 4444
No 61
>KOG0348|consensus
Probab=99.93 E-value=9.4e-26 Score=233.94 Aligned_cols=315 Identities=17% Similarity=0.198 Sum_probs=204.0
Q ss_pred ChhhHHHHHHHHhhhhCcEEE-EeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccC--CCCcccEEEEeccccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLE-EYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQEN--RIDEIGLIVIDEFHML 77 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~-~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~--~l~~i~lvVvDE~H~l 77 (693)
||.|.|+.++++.+..-.-|- .+.||........+..++.+|+|+||+++ ++.+.+.. .+..+.+||+||++.+
T Consensus 223 L~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRL---vDHLknT~~i~~s~LRwlVlDEaDrl 299 (708)
T KOG0348|consen 223 LALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRL---VDHLKNTKSIKFSRLRWLVLDEADRL 299 (708)
T ss_pred HHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHH---HHHHhccchheeeeeeEEEecchhHH
Confidence 689999999999877655443 35677766666666668999999999994 56665444 4588999999999999
Q ss_pred CCCCChHHHHHHHHHHhcc----------CCCceEEEEcCcCCC-HHHHHHh-hcCCCccC-CCCcccceeeEEeCceee
Q psy15878 78 NEPQRGPILECVVSKVLYL----------KKSIQIFAMSATIGN-INALSTF-IEGITYVE-NSRPTKHSEYVTVDKRVF 144 (693)
Q Consensus 78 ~d~~rg~~le~il~~l~~~----------~~~~qii~lSATl~n-~~~la~~-l~~~~~~~-~~rpv~l~~~~~~~~~~~ 144 (693)
.|-+++..+..|+..+... ++..|-+++|||+.+ ..++++. |...++.. +.....+.........+.
T Consensus 300 leLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~ 379 (708)
T KOG0348|consen 300 LELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVD 379 (708)
T ss_pred HhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcC
Confidence 9999999999999887421 123688999999975 5566542 11111111 000000000000000000
Q ss_pred eecCCCCc---hhhhccccccc--CCCCChhhHHHHHh------cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchh
Q psy15878 145 QSFDGKSL---TEIYADNLDYS--LTGSGPDAVLHLVQ------GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQ 213 (693)
Q Consensus 145 ~~~~~~~~---~~~~~~~~~~~--~~~~~~~~l~~l~~------~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~ 213 (693)
..+..+.+ .....+...|. +.....-.+..++. ...++|||+++.+.++.-+..+.+ .+.+.
T Consensus 380 ~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~--~l~~~----- 452 (708)
T KOG0348|consen 380 DGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE--ALLSH----- 452 (708)
T ss_pred CcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh--hhhcc-----
Confidence 00000000 00000000010 11111122233332 667899999999999998888876 22110
Q ss_pred hHHHHHHHHHhccCCccchHHHH-HHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCc
Q psy15878 214 EKEDLIEALKEENDGKLSTNLEE-CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY 292 (693)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~L~~-~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~ 292 (693)
+...........+.. .+...+.-+||+|++++|..+++.|+.....||+||+++++|+|+|.++.||.++.
T Consensus 453 --------~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~ 524 (708)
T KOG0348|consen 453 --------LEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDP 524 (708)
T ss_pred --------cccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCC
Confidence 000000000011111 12234788999999999999999999999999999999999999999999999984
Q ss_pred CCCccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCC
Q psy15878 293 VGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAG 341 (693)
Q Consensus 293 ~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~ 341 (693)
|.+..+|+||+||+.|.| ..|.+++|..+. +.+ |.+++...
T Consensus 525 ----P~s~adylHRvGRTARaG--~kG~alLfL~P~-Eae-y~~~l~~~ 565 (708)
T KOG0348|consen 525 ----PFSTADYLHRVGRTARAG--EKGEALLFLLPS-EAE-YVNYLKKH 565 (708)
T ss_pred ----CCCHHHHHHHhhhhhhcc--CCCceEEEeccc-HHH-HHHHHHhh
Confidence 889999999999999999 799999999998 777 54555443
No 62
>KOG4284|consensus
Probab=99.93 E-value=1.5e-25 Score=236.52 Aligned_cols=266 Identities=18% Similarity=0.223 Sum_probs=200.8
Q ss_pred hhhHHHHHHHHhhh-hCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC-
Q psy15878 2 VHEKYQSLAKAAEE-FKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE- 79 (693)
Q Consensus 2 ~~e~~~~l~~~~~~-~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d- 79 (693)
|-|+-..+..++.. .|+++..+.||+.-. .....+++++|+|+||+++..|+.- ..-....++++|+|||+.+.+
T Consensus 106 aVQI~~tv~~v~~sf~g~~csvfIGGT~~~-~d~~rlk~~rIvIGtPGRi~qL~el--~~~n~s~vrlfVLDEADkL~~t 182 (980)
T KOG4284|consen 106 AVQIKETVRKVAPSFTGARCSVFIGGTAHK-LDLIRLKQTRIVIGTPGRIAQLVEL--GAMNMSHVRLFVLDEADKLMDT 182 (980)
T ss_pred hhHHHHHHHHhcccccCcceEEEecCchhh-hhhhhhhhceEEecCchHHHHHHHh--cCCCccceeEEEeccHHhhhch
Confidence 45666677777654 489999999997543 3444458999999999997665542 233458999999999998887
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHHhhcCCCc-cCCCCcccceeeEEeCceeeeecCCC-Cchhh
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIGN--INALSTFIEGITY-VENSRPTKHSEYVTVDKRVFQSFDGK-SLTEI 155 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~~l~~~~~-~~~~rpv~l~~~~~~~~~~~~~~~~~-~~~~~ 155 (693)
..+..++..|+..| +...|++++|||-|. ...++++++.+.+ ..+.+.+.|- -+.+.++..+..+ ....
T Consensus 183 ~sfq~~In~ii~sl---P~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~---GikQyv~~~~s~nnsvee- 255 (980)
T KOG4284|consen 183 ESFQDDINIIINSL---PQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLF---GIKQYVVAKCSPNNSVEE- 255 (980)
T ss_pred hhHHHHHHHHHHhc---chhheeeEEeccCchhHHHHHHHHhcccceeecccCCceee---chhheeeeccCCcchHHH-
Confidence 55778888777765 677899999999984 4567788876533 3333332221 1111122221111 1110
Q ss_pred hcccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchH
Q psy15878 156 YADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTN 233 (693)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (693)
...+...|.++.. +..++||||+....|+.++..|...|+-
T Consensus 256 ---------mrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d---------------------------- 298 (980)
T KOG4284|consen 256 ---------MRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLD---------------------------- 298 (980)
T ss_pred ---------HHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCC----------------------------
Confidence 1112344555555 8889999999999999999999885444
Q ss_pred HHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCC
Q psy15878 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRT 313 (693)
Q Consensus 234 L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~ 313 (693)
+.+..|.|++.+|..+++.+|+-..+|||+|+..++|||-|.+++||+.+. |.+-..|.||+|||||.
T Consensus 299 --------~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~----p~d~eTY~HRIGRAgRF 366 (980)
T KOG4284|consen 299 --------VTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDA----PADEETYFHRIGRAGRF 366 (980)
T ss_pred --------eEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCC----CcchHHHHHHhhhcccc
Confidence 889999999999999999999999999999999999999999999999874 78999999999999999
Q ss_pred CCCCCCcEEEEeccc
Q psy15878 314 GLQESGESIMLCKTM 328 (693)
Q Consensus 314 g~d~~G~~i~l~~~~ 328 (693)
| ..|.++.++...
T Consensus 367 G--~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 367 G--AHGAAVTLLEDE 379 (980)
T ss_pred c--ccceeEEEeccc
Confidence 9 789999998776
No 63
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.93 E-value=4e-25 Score=252.72 Aligned_cols=257 Identities=16% Similarity=0.183 Sum_probs=167.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccc----cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQ----LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~----~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
||.|+++.+++++..+|+++..++|+.........+ .++++|+|+||+.+ . ....++++++||+||+|.
T Consensus 296 LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll----~---~~~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 296 LAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALI----Q---EKVEFKRLALVIIDEQHR 368 (630)
T ss_pred HHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHH----h---ccccccccceEEEechhh
Confidence 689999999999998999999999987543221111 24689999999863 2 224568999999999998
Q ss_pred cCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccce-eeEEeCceeeeecCCCCchhh
Q psy15878 77 LNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHS-EYVTVDKRVFQSFDGKSLTEI 155 (693)
Q Consensus 77 l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~-~~~~~~~~~~~~~~~~~~~~~ 155 (693)
++...|.. +..... ....+++++||||+.. ..++-.+....-.......|.. ..+ ..+..... .
T Consensus 369 fg~~qr~~----l~~~~~-~~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r~~i----~~~~~~~~-~---- 433 (630)
T TIGR00643 369 FGVEQRKK----LREKGQ-GGFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGRKPI----TTVLIKHD-E---- 433 (630)
T ss_pred ccHHHHHH----HHHhcc-cCCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCCCce----EEEEeCcc-h----
Confidence 76433322 222111 0126799999999743 3333222111100000100100 000 00000000 0
Q ss_pred hcccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHH--------HHHHhhhccCCCCcccchhhHHHHHHHHHhccC
Q psy15878 156 YADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSN--------LALRLQFDRFPGTKEYKKQEKEDLIEALKEEND 227 (693)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~--------la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (693)
.......+.+.+..+.+++|||++....+. +++.|.+ .
T Consensus 434 ---------~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~-----------------------~-- 479 (630)
T TIGR00643 434 ---------KDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKK-----------------------A-- 479 (630)
T ss_pred ---------HHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHh-----------------------h--
Confidence 000011222333378999999998754433 3332222 0
Q ss_pred CccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHh
Q psy15878 228 GKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMV 307 (693)
Q Consensus 228 ~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~ 307 (693)
.-...|+++||+|++++|..+++.|++|+++|||||+++++|||+|++++||.++. +..+.++|.||+
T Consensus 480 ---------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~---~r~gls~lhQ~~ 547 (630)
T TIGR00643 480 ---------FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDA---ERFGLSQLHQLR 547 (630)
T ss_pred ---------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCC---CcCCHHHHHHHh
Confidence 01145999999999999999999999999999999999999999999999998764 235788999999
Q ss_pred hccCCCCCCCCCcEEEEecc
Q psy15878 308 GRAGRTGLQESGESIMLCKT 327 (693)
Q Consensus 308 GRaGR~g~d~~G~~i~l~~~ 327 (693)
||+||.| ..|.|++++..
T Consensus 548 GRvGR~g--~~g~~il~~~~ 565 (630)
T TIGR00643 548 GRVGRGD--HQSYCLLVYKN 565 (630)
T ss_pred hhcccCC--CCcEEEEEECC
Confidence 9999998 68999999843
No 64
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.93 E-value=3.8e-25 Score=254.50 Aligned_cols=249 Identities=19% Similarity=0.247 Sum_probs=167.2
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccc---cc-cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTK---RQ-LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~---~~-~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
||.|+++.+++++..+|++|..++|+........ .. .+.++|+|+||+.+ . ..-.++++++||+||+|.
T Consensus 322 LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll----~---~~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 322 LAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALI----Q---DDVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHh----c---ccchhcccceEEEechhh
Confidence 6899999999999999999999999875322211 11 14699999999863 2 223578999999999998
Q ss_pred cCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccC--CCCcc---cceeeEEeCceeeeecCCCC
Q psy15878 77 LNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVE--NSRPT---KHSEYVTVDKRVFQSFDGKS 151 (693)
Q Consensus 77 l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~--~~rpv---~l~~~~~~~~~~~~~~~~~~ 151 (693)
++...|. . +......+++++||||+. +..++--........ +..|. ++... ......
T Consensus 395 fg~~qr~-----~---l~~~~~~~~iL~~SATp~-prtl~~~~~g~~~~s~i~~~p~~r~~i~~~--------~~~~~~- 456 (681)
T PRK10917 395 FGVEQRL-----A---LREKGENPHVLVMTATPI-PRTLAMTAYGDLDVSVIDELPPGRKPITTV--------VIPDSR- 456 (681)
T ss_pred hhHHHHH-----H---HHhcCCCCCEEEEeCCCC-HHHHHHHHcCCCceEEEecCCCCCCCcEEE--------EeCccc-
Confidence 7532222 1 222245689999999974 333332221110000 00010 00000 000000
Q ss_pred chhhhcccccccCCCCChhhHHHHHhcCCceEEEeCChHHHH--------HHHHHhhhccCCCCcccchhhHHHHHHHHH
Q psy15878 152 LTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACS--------NLALRLQFDRFPGTKEYKKQEKEDLIEALK 223 (693)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e--------~la~~L~~~~~~~~~~~~~~~~~~~~~~l~ 223 (693)
.....+.+.+.+..+.+++||||+.++.+ .+++.|.+
T Consensus 457 -------------~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~---------------------- 501 (681)
T PRK10917 457 -------------RDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQE---------------------- 501 (681)
T ss_pred -------------HHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHH----------------------
Confidence 00011223333348899999999765443 33333332
Q ss_pred hccCCccchHHHHHH-hhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHH
Q psy15878 224 EENDGKLSTNLEECI-LYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNM 302 (693)
Q Consensus 224 ~~~~~~~~~~L~~~~-~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~ 302 (693)
.+ ...++++||+|+.++|+.+++.|++|+++|||||+++++|||+|++++||.++. +..+.++
T Consensus 502 -------------~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~---~r~gls~ 565 (681)
T PRK10917 502 -------------AFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENA---ERFGLAQ 565 (681)
T ss_pred -------------HCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCC---CCCCHHH
Confidence 11 135999999999999999999999999999999999999999999999998764 2346889
Q ss_pred HHHHhhccCCCCCCCCCcEEEEecc
Q psy15878 303 YKQMVGRAGRTGLQESGESIMLCKT 327 (693)
Q Consensus 303 ~~Qr~GRaGR~g~d~~G~~i~l~~~ 327 (693)
+.||+||+||.| ..|.|+++++.
T Consensus 566 lhQ~~GRvGR~g--~~g~~ill~~~ 588 (681)
T PRK10917 566 LHQLRGRVGRGA--AQSYCVLLYKD 588 (681)
T ss_pred HHHHhhcccCCC--CceEEEEEECC
Confidence 999999999998 68999999953
No 65
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.93 E-value=5.6e-25 Score=256.38 Aligned_cols=250 Identities=19% Similarity=0.287 Sum_probs=174.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccc---cc-cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTK---RQ-LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~---~~-~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
||.|+++.|++++..+++++..++|+.+...... .. .++++|+|+||. ++. ..-.++++++|||||+|+
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll~---~~v~f~~L~llVIDEahr 584 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LLQ---KDVKFKDLGLLIIDEEQR 584 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----Hhh---CCCCcccCCEEEeecccc
Confidence 6899999999998889999999998765322211 11 146899999994 232 234678999999999998
Q ss_pred cCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcC-C-CccCCCCc---ccceeeEEeCceeeeecCCCC
Q psy15878 77 LNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEG-I-TYVENSRP---TKHSEYVTVDKRVFQSFDGKS 151 (693)
Q Consensus 77 l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~-~-~~~~~~rp---v~l~~~~~~~~~~~~~~~~~~ 151 (693)
++ ......+ +....++|+++||||+. +..+...+.. . ...-...| .++..++ ..
T Consensus 585 fg-----v~~~~~L---~~~~~~~~vL~~SATpi-prtl~~~l~g~~d~s~I~~~p~~R~~V~t~v--------~~---- 643 (926)
T TIGR00580 585 FG-----VKQKEKL---KELRTSVDVLTLSATPI-PRTLHMSMSGIRDLSIIATPPEDRLPVRTFV--------ME---- 643 (926)
T ss_pred cc-----hhHHHHH---HhcCCCCCEEEEecCCC-HHHHHHHHhcCCCcEEEecCCCCccceEEEE--------Ee----
Confidence 64 2222233 33356789999999964 3444332211 1 00000001 0111110 00
Q ss_pred chhhhcccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccc
Q psy15878 152 LTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLS 231 (693)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 231 (693)
+. .....+.+...+..+++++||||+++.++.+++.|.+ .. |
T Consensus 644 ----------~~-~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~--~~-p------------------------ 685 (926)
T TIGR00580 644 ----------YD-PELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRE--LV-P------------------------ 685 (926)
T ss_pred ----------cC-HHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHH--hC-C------------------------
Confidence 00 0000122333334789999999999999999998876 22 0
Q ss_pred hHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccC
Q psy15878 232 TNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAG 311 (693)
Q Consensus 232 ~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaG 311 (693)
...++.+||+|++++|..+++.|++|+++|||||+++++|||+|++++||..+. +..+.++|.||+||+|
T Consensus 686 -------~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a---~~~gls~l~Qr~GRvG 755 (926)
T TIGR00580 686 -------EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA---DKFGLAQLYQLRGRVG 755 (926)
T ss_pred -------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC---CCCCHHHHHHHhcCCC
Confidence 124899999999999999999999999999999999999999999999987654 2357889999999999
Q ss_pred CCCCCCCCcEEEEeccc
Q psy15878 312 RTGLQESGESIMLCKTM 328 (693)
Q Consensus 312 R~g~d~~G~~i~l~~~~ 328 (693)
|.| ..|.||+++++.
T Consensus 756 R~g--~~g~aill~~~~ 770 (926)
T TIGR00580 756 RSK--KKAYAYLLYPHQ 770 (926)
T ss_pred CCC--CCeEEEEEECCc
Confidence 999 689999998765
No 66
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.93 E-value=2.6e-24 Score=243.86 Aligned_cols=247 Identities=19% Similarity=0.221 Sum_probs=169.2
Q ss_pred ChhhHHHHHHHHhhhh-----------------------CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhch
Q psy15878 1 MVHEKYQSLAKAAEEF-----------------------KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSL 57 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~-----------------------~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l 57 (693)
||.|.++.+.++++.+ ++++..+.||.....+......+++|||+|++.+ .++.
T Consensus 74 La~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i---~sr~ 150 (844)
T TIGR02621 74 VVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMI---GSRL 150 (844)
T ss_pred HHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHH---cCCc
Confidence 6789999999998766 4889999999887777776667899999997543 3333
Q ss_pred hc-------------cCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccC--CCceEEEEcCcCCC-HHHHHHhhcC
Q psy15878 58 IQ-------------ENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLK--KSIQIFAMSATIGN-INALSTFIEG 121 (693)
Q Consensus 58 ~~-------------~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~--~~~qii~lSATl~n-~~~la~~l~~ 121 (693)
+. .+.+++++++|+|||| .+..+...++.|+..+.... .+.|+++||||++. ..++...+..
T Consensus 151 L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~ 228 (844)
T TIGR02621 151 LFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA 228 (844)
T ss_pred cccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc
Confidence 21 1236889999999999 34578888888887642111 23699999999984 4445444432
Q ss_pred CCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhh----HHHHHh-cCCceEEEeCChHHHHHHH
Q psy15878 122 ITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDA----VLHLVQ-GNLMVLIFCSSKIACSNLA 196 (693)
Q Consensus 122 ~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~l~~-~~~~vLVF~~sr~~~e~la 196 (693)
+.+.. ++. ............+... ...+.+. +..+.. .++++||||||++.|+.++
T Consensus 229 ~p~~i---~V~-~~~l~a~ki~q~v~v~---------------~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~ 289 (844)
T TIGR02621 229 EDYKH---PVL-KKRLAAKKIVKLVPPS---------------DEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVF 289 (844)
T ss_pred CCcee---ecc-cccccccceEEEEecC---------------hHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHH
Confidence 21110 000 0000000000000000 0011111 222222 6789999999999999999
Q ss_pred HHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHH-----HHHHHHhC----CC--
Q psy15878 197 LRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERR-----LIEEAYLA----GT-- 265 (693)
Q Consensus 197 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~-----~ve~~f~~----g~-- 265 (693)
+.|.+ .++..+||+|++.+|. .+++.|++ |.
T Consensus 290 ~~L~~--------------------------------------~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~ 331 (844)
T TIGR02621 290 AKLPK--------------------------------------EKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRA 331 (844)
T ss_pred HHHHh--------------------------------------cCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccc
Confidence 99976 2357899999999999 78899987 54
Q ss_pred -----CeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCC
Q psy15878 266 -----LQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQ 316 (693)
Q Consensus 266 -----i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d 316 (693)
.+|||||+++++|||++. .+||++. .+..+|+||+||+||.|..
T Consensus 332 ~~~~g~~ILVATdVaerGLDId~-d~VI~d~------aP~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 332 RPQQGTVYLVCTSAGEVGVNISA-DHLVCDL------APFESMQQRFGRVNRFGEL 380 (844)
T ss_pred cccccceEEeccchhhhcccCCc-ceEEECC------CCHHHHHHHhcccCCCCCC
Confidence 689999999999999998 5555543 2578999999999999953
No 67
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.92 E-value=1.5e-24 Score=258.03 Aligned_cols=251 Identities=17% Similarity=0.275 Sum_probs=172.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccc----cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQ----LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~----~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
||.|+++.|++++...++++..++|+.+...+...+ .+.++|+|+||+. ++. .-.+++++++||||+|+
T Consensus 661 LA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~l----L~~---~v~~~~L~lLVIDEahr 733 (1147)
T PRK10689 661 LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKL----LQS---DVKWKDLGLLIVDEEHR 733 (1147)
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHH----HhC---CCCHhhCCEEEEechhh
Confidence 689999999998877889999998876543332221 1468999999963 332 23468999999999998
Q ss_pred cCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHh-hcCC-CccCC-CCcccceeeEEeCceeeeecCCCCc
Q psy15878 77 LNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTF-IEGI-TYVEN-SRPTKHSEYVTVDKRVFQSFDGKSL 152 (693)
Q Consensus 77 l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~-l~~~-~~~~~-~rpv~l~~~~~~~~~~~~~~~~~~~ 152 (693)
++. ... .+++....++|+++||||+.. ...++.. +... .+... ....++...+.
T Consensus 734 fG~-----~~~---e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~-------------- 791 (1147)
T PRK10689 734 FGV-----RHK---ERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR-------------- 791 (1147)
T ss_pred cch-----hHH---HHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEE--------------
Confidence 742 111 233344678999999999743 2222221 1110 00000 00001110000
Q ss_pred hhhhcccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccch
Q psy15878 153 TEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLST 232 (693)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 232 (693)
.+. .....+.+..-+..+++++||||+++.++.+++.|.+ .. |
T Consensus 792 --------~~~-~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~--~~-p------------------------- 834 (1147)
T PRK10689 792 --------EYD-SLVVREAILREILRGGQVYYLYNDVENIQKAAERLAE--LV-P------------------------- 834 (1147)
T ss_pred --------ecC-cHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHH--hC-C-------------------------
Confidence 000 0000122222233678999999999999999999887 21 0
Q ss_pred HHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCC
Q psy15878 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGR 312 (693)
Q Consensus 233 ~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR 312 (693)
..++.++||+|++++|..++..|++|+++|||||+++++|+|+|++++||.... +..+..+|.||+||+||
T Consensus 835 ------~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~a---d~fglaq~~Qr~GRvGR 905 (1147)
T PRK10689 835 ------EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA---DHFGLAQLHQLRGRVGR 905 (1147)
T ss_pred ------CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecC---CCCCHHHHHHHhhccCC
Confidence 135899999999999999999999999999999999999999999999885432 24578899999999999
Q ss_pred CCCCCCCcEEEEeccc
Q psy15878 313 TGLQESGESIMLCKTM 328 (693)
Q Consensus 313 ~g~d~~G~~i~l~~~~ 328 (693)
.| ..|.||+++...
T Consensus 906 ~g--~~g~a~ll~~~~ 919 (1147)
T PRK10689 906 SH--HQAYAWLLTPHP 919 (1147)
T ss_pred CC--CceEEEEEeCCC
Confidence 99 689999988654
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.92 E-value=2.3e-24 Score=232.12 Aligned_cols=230 Identities=20% Similarity=0.243 Sum_probs=147.8
Q ss_pred CCcEEEEcccchHHHHhchhccC--CC--CcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHH
Q psy15878 39 KKSIYICTIEKGSKLIGSLIQEN--RI--DEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINA 114 (693)
Q Consensus 39 ~~~IiV~Tpek~~~Ll~~l~~~~--~l--~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~ 114 (693)
.++|+|+||+++...+..-.... .+ -..++||+||+|.+.+..++. +..++..+. ..+.|+++||||+| +.
T Consensus 94 ~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~--~~~~~~i~~SATlp--~~ 168 (358)
T TIGR01587 94 LDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK--DNDVPILLMSATLP--KF 168 (358)
T ss_pred hCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH--HcCCCEEEEecCch--HH
Confidence 46899999999754443311111 11 123899999999998755554 555555554 35689999999997 45
Q ss_pred HHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHh---cCCceEEEeCChHH
Q psy15878 115 LSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIA 191 (693)
Q Consensus 115 la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~ 191 (693)
+.+|+............+...........+.... .....+...+..++. .++++||||+|++.
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 169 LKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIE--------------SDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred HHHHHhcCCCcccccCCCCccccccccccceeec--------------cccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 5565533211111001110000000000000000 001122333444443 68899999999999
Q ss_pred HHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH----HHHHhCCCCe
Q psy15878 192 CSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI----EEAYLAGTLQ 267 (693)
Q Consensus 192 ~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v----e~~f~~g~i~ 267 (693)
|+.++..|.+.+.. ..+..+||++++.+|..+ .+.|++|..+
T Consensus 235 ~~~~~~~L~~~~~~----------------------------------~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ 280 (358)
T TIGR01587 235 AQEFYQQLKENAPE----------------------------------EEIMLLHSRFTEKDRAKKEAELLEEMKKNEKF 280 (358)
T ss_pred HHHHHHHHHhhcCC----------------------------------CeEEEEECCCCHHHHHHHHHHHHHHhcCCCCe
Confidence 99999999762111 238999999999999764 7899999999
Q ss_pred EEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCC--CCCcEEEEeccc
Q psy15878 268 IICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQ--ESGESIMLCKTM 328 (693)
Q Consensus 268 VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d--~~G~~i~l~~~~ 328 (693)
|||||+++++|+|+|. ++||.++ .+..+|.||+||+||.|.. ..|.++++....
T Consensus 281 ilvaT~~~~~GiDi~~-~~vi~~~------~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 281 VIVATQVIEASLDISA-DVMITEL------APIDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred EEEECcchhceeccCC-CEEEEcC------CCHHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 9999999999999985 4555543 3678999999999998854 235888887655
No 69
>KOG0350|consensus
Probab=99.92 E-value=1.6e-24 Score=223.45 Aligned_cols=283 Identities=18% Similarity=0.208 Sum_probs=192.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCcccccc-----CCCcEEEEcccchHHHHhchhcc--CCCCcccEEEEec
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQL-----NKKSIYICTIEKGSKLIGSLIQE--NRIDEIGLIVIDE 73 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~-----~~~~IiV~Tpek~~~Ll~~l~~~--~~l~~i~lvVvDE 73 (693)
|+.|.|..|.+++.+.|+.|..+.|..+-.....+.. ...||+|+||+++ ++.+.+. ..|+++.++||||
T Consensus 227 L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL---VDHl~~~k~f~Lk~LrfLVIDE 303 (620)
T KOG0350|consen 227 LALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL---VDHLNNTKSFDLKHLRFLVIDE 303 (620)
T ss_pred HHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHH---HHhccCCCCcchhhceEEEech
Confidence 6889999999999999999999998764332222221 2349999999995 4544433 3569999999999
Q ss_pred ccccCCCCChHHHHHHHHHHhcc-------------------------------CCCceEEEEcCcCC-CHHHHHHhh-c
Q psy15878 74 FHMLNEPQRGPILECVVSKVLYL-------------------------------KKSIQIFAMSATIG-NINALSTFI-E 120 (693)
Q Consensus 74 ~H~l~d~~rg~~le~il~~l~~~-------------------------------~~~~qii~lSATl~-n~~~la~~l-~ 120 (693)
++.+++..|..=+..++..+... .+..+.+.+|||+. ++..+.++- +
T Consensus 304 ADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~ 383 (620)
T KOG0350|consen 304 ADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLH 383 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcC
Confidence 99998755443333333322211 01223455566654 244444321 1
Q ss_pred CCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHH
Q psy15878 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALR 198 (693)
Q Consensus 121 ~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~ 198 (693)
.+.......| ....|.+++. +..... ......++-.+..++. +..++|+|+++...+.+++..
T Consensus 384 ~Prl~~v~~~---------~~~ryslp~~--l~~~~v----v~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~ 448 (620)
T KOG0350|consen 384 IPRLFHVSKP---------LIGRYSLPSS--LSHRLV----VTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHV 448 (620)
T ss_pred CCceEEeecc---------cceeeecChh--hhhcee----ecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHH
Confidence 1100000000 0112222211 000000 0113345566677776 889999999999999999998
Q ss_pred hhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcc
Q psy15878 199 LQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAG 278 (693)
Q Consensus 199 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~G 278 (693)
|.- .+ ++ ....+..+.|+++...|....+.|+.|.++|||||+++++|
T Consensus 449 L~v--~~-----------------~~-------------~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRG 496 (620)
T KOG0350|consen 449 LKV--EF-----------------CS-------------DNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARG 496 (620)
T ss_pred HHH--Hh-----------------cc-------------ccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcC
Confidence 872 11 00 01236668999999999999999999999999999999999
Q ss_pred cCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhC
Q psy15878 279 VNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNA 340 (693)
Q Consensus 279 vnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~ 340 (693)
+|+-+++.||+|+. |.+...|+||+||++|+| ..|.||.+.... +...+.++++.
T Consensus 497 iDv~~v~~VINYd~----P~~~ktyVHR~GRTARAg--q~G~a~tll~~~-~~r~F~klL~~ 551 (620)
T KOG0350|consen 497 IDVNDVDNVINYDP----PASDKTYVHRAGRTARAG--QDGYAITLLDKH-EKRLFSKLLKK 551 (620)
T ss_pred CcccccceEeecCC----CchhhHHHHhhccccccc--CCceEEEeeccc-cchHHHHHHHH
Confidence 99999999999984 889999999999999999 689999999988 77777777653
No 70
>KOG0327|consensus
Probab=99.92 E-value=8.3e-24 Score=213.15 Aligned_cols=276 Identities=17% Similarity=0.251 Sum_probs=205.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccc-cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQ-LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~-~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
||+|..+....++...+.+|..+.|+........+. ...++|+|+||++...+++. ..-..+.+.++|+||++++..
T Consensus 106 La~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~--~~l~~~~iKmfvlDEaDEmLs 183 (397)
T KOG0327|consen 106 LAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR--GSLSTDGIKMFVLDEADEMLS 183 (397)
T ss_pred HHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc--ccccccceeEEeecchHhhhc
Confidence 577788888888888999999888876544233222 25689999999998776665 233447799999999998887
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH-hhcCCCccCCCCcccceee-EEe-CceeeeecCCCCchhh
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST-FIEGITYVENSRPTKHSEY-VTV-DKRVFQSFDGKSLTEI 155 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~-~l~~~~~~~~~rpv~l~~~-~~~-~~~~~~~~~~~~~~~~ 155 (693)
.++-..+..+...+ +++.|++++|||.|. ..++++ |... .+++..... ... +.+.+.+.
T Consensus 184 ~gfkdqI~~if~~l---p~~vQv~l~SAT~p~~vl~vt~~f~~~------pv~i~vkk~~ltl~gikq~~i~-------- 246 (397)
T KOG0327|consen 184 RGFKDQIYDIFQEL---PSDVQVVLLSATMPSDVLEVTKKFMRE------PVRILVKKDELTLEGIKQFYIN-------- 246 (397)
T ss_pred cchHHHHHHHHHHc---CcchhheeecccCcHHHHHHHHHhccC------ceEEEecchhhhhhheeeeeee--------
Confidence 77888888877765 788999999999985 555554 3322 111111100 000 00011110
Q ss_pred hcccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHH
Q psy15878 156 YADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLE 235 (693)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 235 (693)
.....+.+.+..++..-.+++|||||++.+..+...|...+.
T Consensus 247 -------v~k~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L~~~~~------------------------------- 288 (397)
T KOG0327|consen 247 -------VEKEEKLDTLCDLYRRVTQAVIFCNTRRKVDNLTDKLRAHGF------------------------------- 288 (397)
T ss_pred -------ccccccccHHHHHHHhhhcceEEecchhhHHHHHHHHhhCCc-------------------------------
Confidence 012235566667777888999999999999999999965332
Q ss_pred HHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCC
Q psy15878 236 ECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGL 315 (693)
Q Consensus 236 ~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~ 315 (693)
.+...|+.|.+.+|..+.+.|+.|..+|||.|+.+++|+|+..+..||+++. |-...+|.||+||+||.|
T Consensus 289 -----~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydl----P~~~~~yihR~gr~gr~g- 358 (397)
T KOG0327|consen 289 -----TVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDL----PARKENYIHRIGRAGRFG- 358 (397)
T ss_pred -----eEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecc----ccchhhhhhhcccccccC-
Confidence 3899999999999999999999999999999999999999999999999986 678999999999999999
Q ss_pred CCCCcEEEEecccccHHHH---HHHHhCCCCcc
Q psy15878 316 QESGESIMLCKTMQDFLRF---SSMMNAGPEPI 345 (693)
Q Consensus 316 d~~G~~i~l~~~~~~~~~~---~~~l~~~~~~i 345 (693)
.+|.++.+++.. +...+ +++.+.+.+.+
T Consensus 359 -rkg~~in~v~~~-d~~~lk~ie~~y~~~i~e~ 389 (397)
T KOG0327|consen 359 -RKGVAINFVTEE-DVRDLKDIEKFYNTPIEEL 389 (397)
T ss_pred -CCceeeeeehHh-hHHHHHhHHHhcCCcceec
Confidence 799999999887 55544 44555555433
No 71
>KOG0334|consensus
Probab=99.91 E-value=2.9e-24 Score=240.71 Aligned_cols=267 Identities=16% Similarity=0.233 Sum_probs=206.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCC---CCcccEEEEeccccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENR---IDEIGLIVIDEFHML 77 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~---l~~i~lvVvDE~H~l 77 (693)
|+.|+.+++++|++.+++++...+|+.+...+.....+.+.|+||||+++..++-. +.+. +.++.++|+||++.+
T Consensus 450 la~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~--n~grvtnlrR~t~lv~deaDrm 527 (997)
T KOG0334|consen 450 LAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCA--NSGRVTNLRRVTYLVLDEADRM 527 (997)
T ss_pred HHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhh--cCCccccccccceeeechhhhh
Confidence 68999999999999999999999999988877777767899999999997665533 4444 466669999999999
Q ss_pred CCCCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhh
Q psy15878 78 NEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIY 156 (693)
Q Consensus 78 ~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 156 (693)
.|..+.|+.-.|+..+ ++..|.+.+|||.+. ...++.-+-. .|+.+ .++........ .
T Consensus 528 fdmgfePq~~~Ii~nl---rpdrQtvlfSatfpr~m~~la~~vl~-------~Pvei----iv~~~svV~k~---V---- 586 (997)
T KOG0334|consen 528 FDMGFEPQITRILQNL---RPDRQTVLFSATFPRSMEALARKVLK-------KPVEI----IVGGRSVVCKE---V---- 586 (997)
T ss_pred heeccCcccchHHhhc---chhhhhhhhhhhhhHHHHHHHHHhhc-------CCeeE----EEccceeEecc---c----
Confidence 9988999888888776 588999999999986 4555543211 24331 11111100000 0
Q ss_pred cccccccC-CCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccch
Q psy15878 157 ADNLDYSL-TGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLST 232 (693)
Q Consensus 157 ~~~~~~~~-~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 232 (693)
...+.... ...+...+.+++. +.+++||||.....|..+.+.|.+.++.
T Consensus 587 ~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~--------------------------- 639 (997)
T KOG0334|consen 587 TQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYN--------------------------- 639 (997)
T ss_pred eEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcc---------------------------
Confidence 00000001 2334555666665 8999999999999999999999874443
Q ss_pred HHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCC
Q psy15878 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGR 312 (693)
Q Consensus 233 ~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR 312 (693)
+..+|||.++.+|..+++.|++|.+++||||+++++|+|++...+||++++ |--..+|.||+||+||
T Consensus 640 ---------~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~----pnh~edyvhR~gRTgr 706 (997)
T KOG0334|consen 640 ---------CDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDF----PNHYEDYVHRVGRTGR 706 (997)
T ss_pred ---------hhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEccc----chhHHHHHHHhccccc
Confidence 344899999999999999999999999999999999999999999999987 4567889999999999
Q ss_pred CCCCCCCcEEEEecccccHHH
Q psy15878 313 TGLQESGESIMLCKTMQDFLR 333 (693)
Q Consensus 313 ~g~d~~G~~i~l~~~~~~~~~ 333 (693)
.| ..|.|+.|.++. +..+
T Consensus 707 ag--rkg~AvtFi~p~-q~~~ 724 (997)
T KOG0334|consen 707 AG--RKGAAVTFITPD-QLKY 724 (997)
T ss_pred CC--ccceeEEEeChH-Hhhh
Confidence 99 789999999885 4433
No 72
>KOG0925|consensus
Probab=99.91 E-value=4.2e-24 Score=219.27 Aligned_cols=350 Identities=15% Similarity=0.197 Sum_probs=227.6
Q ss_pred HHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHH
Q psy15878 9 LAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILEC 88 (693)
Q Consensus 9 l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~ 88 (693)
-++.+.+++++.+.=.|..-+++.-.- .+.-+-.||.+. |++..++.+.+..++++|+||||... --...+..
T Consensus 108 a~RVadEMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgm---LlrEams~p~l~~y~viiLDeahERt--lATDiLmG 180 (699)
T KOG0925|consen 108 AQRVADEMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGM---LLREAMSDPLLGRYGVIILDEAHERT--LATDILMG 180 (699)
T ss_pred HHHHHHHhccccchhccccccccccCC--hhHHHHHhcchH---HHHHHhhCcccccccEEEechhhhhh--HHHHHHHH
Confidence 355667777777665655433322110 122233566665 67888889999999999999999543 24456777
Q ss_pred HHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCC-CccCC-CCcccceeeEEeCceeeeecCCCCchhhhcccccccCCC
Q psy15878 89 VVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI-TYVEN-SRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTG 166 (693)
Q Consensus 89 il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~-~~~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (693)
++..+...+++.++|.||||+ ++..|..|++.. +.... ..||.+ +|......+. .+
T Consensus 181 llk~v~~~rpdLk~vvmSatl-~a~Kfq~yf~n~Pll~vpg~~PvEi---------~Yt~e~erDy------------lE 238 (699)
T KOG0925|consen 181 LLKEVVRNRPDLKLVVMSATL-DAEKFQRYFGNAPLLAVPGTHPVEI---------FYTPEPERDY------------LE 238 (699)
T ss_pred HHHHHHhhCCCceEEEeeccc-chHHHHHHhCCCCeeecCCCCceEE---------EecCCCChhH------------HH
Confidence 777777677899999999998 678888887653 32222 223222 1111111000 00
Q ss_pred CChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEE
Q psy15878 167 SGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAY 244 (693)
Q Consensus 167 ~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~ 244 (693)
.....+.++.. ..+.+|||.++.++++..++.+..+. +.|. .++-+..|.+
T Consensus 239 aairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~----------------~~L~-----------~~~g~l~v~P 291 (699)
T KOG0925|consen 239 AAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREV----------------DNLG-----------PQVGPLKVVP 291 (699)
T ss_pred HHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHH----------------Hhhc-----------cccCCceEEe
Confidence 11122333333 78999999999999999999987511 0010 1122234777
Q ss_pred EcCCCCHHHHHHHHHHHhC---C--CCeEEEecchhhcccCCCCcEEEEecCcCCC--------------ccCCHHHHHH
Q psy15878 245 HHADLTAGERRLIEEAYLA---G--TLQIICCTSTLAAGVNLPAQRVIIRDSYVGR--------------DFISLNMYKQ 305 (693)
Q Consensus 245 ~h~~l~~~eR~~ve~~f~~---g--~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~--------------~~~s~~~~~Q 305 (693)
+| +.++..+++.... | ..+|+|+|++++..+.++++.+||+.++..+ .|+|.++..|
T Consensus 292 Ly----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~q 367 (699)
T KOG0925|consen 292 LY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQ 367 (699)
T ss_pred cC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHH
Confidence 77 5555555555442 2 3699999999999999999999999654211 4899999999
Q ss_pred HhhccCCCCCCCCCcEEEEecccccHHHHHH-HHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhh
Q psy15878 306 MVGRAGRTGLQESGESIMLCKTMQDFLRFSS-MMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384 (693)
Q Consensus 306 r~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~-~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~ 384 (693)
|.|||||.. +|.|+.+++++ .+.+ +.....+ .+.+.+|.+.+|.+-..|+. +...+.|+..
T Consensus 368 R~gragrt~---pGkcfrLYte~----~~~~em~~~typ----eilrsNL~s~VL~LKklgI~-------dlvhfdfmDp 429 (699)
T KOG0925|consen 368 RAGRAGRTR---PGKCFRLYTEE----AFEKEMQPQTYP----EILRSNLSSTVLQLKKLGID-------DLVHFDFMDP 429 (699)
T ss_pred HhhhccCCC---CCceEEeecHH----hhhhcCCCCCcH----HHHHHhhHHHHHHHHhcCcc-------cccCCcCCCC
Confidence 999999998 99999999876 2322 2111111 11145678888888776653 3444555543
Q ss_pred ccCchhhhhhhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhh
Q psy15878 385 LKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHN 451 (693)
Q Consensus 385 ~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~ 451 (693)
+..+....+++.|.-.++++.+ ..+|++|..||.+|++|..|++++.+..-.
T Consensus 430 ----------PAPEtLMrALE~LnYLaaLdDd-----GnLT~lG~imSEFPLdPqLAkmLi~S~efn 481 (699)
T KOG0925|consen 430 ----------PAPETLMRALEVLNYLAALDDD-----GNLTSLGEIMSEFPLDPQLAKMLIGSCEFN 481 (699)
T ss_pred ----------CChHHHHHHHHHhhhhhhhCCC-----cccchhhhhhhcCCCChHHHHHHhhcCCCC
Confidence 2344455666666666666533 468999999999999999999999876544
No 73
>KOG0926|consensus
Probab=99.91 E-value=3.3e-24 Score=231.01 Aligned_cols=354 Identities=21% Similarity=0.252 Sum_probs=226.1
Q ss_pred CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccC----------CCceEEEEcC
Q psy15878 38 NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLK----------KSIQIFAMSA 107 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~----------~~~qii~lSA 107 (693)
....|-++|.+. |++.+.++..|..++.||+||||..+ -....+-.+++|+-.++ ...++|.|||
T Consensus 348 e~T~IkFMTDGV---LLrEi~~DflL~kYSvIIlDEAHERS--vnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSA 422 (1172)
T KOG0926|consen 348 EDTSIKFMTDGV---LLREIENDFLLTKYSVIILDEAHERS--VNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSA 422 (1172)
T ss_pred CCceeEEecchH---HHHHHHHhHhhhhceeEEechhhhcc--chHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEee
Confidence 567899999997 67888788888999999999999654 34556666666654322 2679999999
Q ss_pred cCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHH-------HHHh--c
Q psy15878 108 TIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVL-------HLVQ--G 178 (693)
Q Consensus 108 Tl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~l~~--~ 178 (693)
|+- ..+|.+ +..+| ...-| .++++...|++.- -+. .....+.+. .+.. +
T Consensus 423 TLR-VsDFte--nk~LF-pi~pP-----likVdARQfPVsI----HF~---------krT~~DYi~eAfrKtc~IH~kLP 480 (1172)
T KOG0926|consen 423 TLR-VSDFTE--NKRLF-PIPPP-----LIKVDARQFPVSI----HFN---------KRTPDDYIAEAFRKTCKIHKKLP 480 (1172)
T ss_pred eEE-eccccc--Cceec-CCCCc-----eeeeecccCceEE----Eec---------cCCCchHHHHHHHHHHHHhhcCC
Confidence 983 233321 11111 11111 1112211221110 000 111123332 2333 8
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccC--CCC-------c-------------------cc-------chhhHHH-H----
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRF--PGT-------K-------------------EY-------KKQEKED-L---- 218 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~--~~~-------~-------------------~~-------~~~~~~~-~---- 218 (693)
.|.+|||+.+.+++..++..|.+.-. ..+ + +| ..+.+.. +
T Consensus 481 ~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~ 560 (1172)
T KOG0926|consen 481 PGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSG 560 (1172)
T ss_pred CCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhccc
Confidence 89999999999999999999987311 100 0 00 0000000 0
Q ss_pred -------HHHHHhcc---CCccchHHHH-------------HHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchh
Q psy15878 219 -------IEALKEEN---DGKLSTNLEE-------------CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTL 275 (693)
Q Consensus 219 -------~~~l~~~~---~~~~~~~L~~-------------~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l 275 (693)
.+.+.+.+ +|.-.....+ +-+.-|.++++-|+.+++..|++.-..|..-++|||+++
T Consensus 561 ~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVA 640 (1172)
T KOG0926|consen 561 FASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVA 640 (1172)
T ss_pred chhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccch
Confidence 00000100 0100001110 112237889999999999999999999999999999999
Q ss_pred hcccCCCCcEEEEecCcC---------CC-----ccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHH-HHHhC
Q psy15878 276 AAGVNLPAQRVIIRDSYV---------GR-----DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFS-SMMNA 340 (693)
Q Consensus 276 ~~Gvnlp~~~vVI~~~~~---------g~-----~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~-~~l~~ 340 (693)
+.+++||++++||+.+.. |. .|+|.++.-||+|||||.| +|+||.++++. .|. .|-.-
T Consensus 641 ETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSA----Vf~~~Fe~f 713 (1172)
T KOG0926|consen 641 ETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSA----VFSNDFEEF 713 (1172)
T ss_pred hcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhH----Hhhcchhhh
Confidence 999999999999996431 21 3789999999999999999 99999999876 222 12111
Q ss_pred CCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhhhhhhhHHHHHHHHHhhcCCeEeeccCc
Q psy15878 341 GPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAG 420 (693)
Q Consensus 341 ~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~~~ 420 (693)
..|.+. ......++|++-+.++.+ .....|... +.+..++.+.+.|..+|+++..
T Consensus 714 S~PEIl----k~Pve~lvLqMKsMnI~k-------VvnFPFPtp----------Pd~~~L~~Aer~L~~LgALd~~---- 768 (1172)
T KOG0926|consen 714 SLPEIL----KKPVESLVLQMKSMNIDK-------VVNFPFPTP----------PDRSALEKAERRLKALGALDSN---- 768 (1172)
T ss_pred ccHHHh----hCcHHHHHHHHHhcCccc-------eecCCCCCC----------ccHHHHHHHHHHHHHhcccccc----
Confidence 221111 245678888887776532 222233322 2344578899999999999963
Q ss_pred cEEecHHHHHHHHcCCChhHHHHHHHhhhhh
Q psy15878 421 HLSLTSIAKAAVQAGLSHDVCLIIYSDLLHN 451 (693)
Q Consensus 421 ~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~ 451 (693)
..+|++|+.||.+|++|+.++++.-+-+..
T Consensus 769 -g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~ 798 (1172)
T KOG0926|consen 769 -GGLTKLGKAMSLFPLSPRFSKMLATSDQHN 798 (1172)
T ss_pred -CCcccccchhcccccChhHHHHHHHHHhhc
Confidence 369999999999999999999998766654
No 74
>KOG0949|consensus
Probab=99.91 E-value=1.2e-23 Score=230.92 Aligned_cols=300 Identities=23% Similarity=0.315 Sum_probs=196.4
Q ss_pred CCcEEEEcccchHHHHhc-hhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHH
Q psy15878 39 KKSIYICTIEKGSKLIGS-LIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALST 117 (693)
Q Consensus 39 ~~~IiV~Tpek~~~Ll~~-l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~ 117 (693)
+|+|+|+-||.+.+++.+ -....|...+.++|+||+|.++...-|..+|.++-. ..+.++++|||++|+..+..
T Consensus 605 nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l-----i~CP~L~LSATigN~~l~qk 679 (1330)
T KOG0949|consen 605 NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL-----IPCPFLVLSATIGNPNLFQK 679 (1330)
T ss_pred hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-----cCCCeeEEecccCCHHHHHH
Confidence 799999999999887766 334568899999999999999988888888887764 35889999999999999999
Q ss_pred hhcCC---------CccCCCCcccceeeE----------------EeCce-----------------eeeecCCCCchhh
Q psy15878 118 FIEGI---------TYVENSRPTKHSEYV----------------TVDKR-----------------VFQSFDGKSLTEI 155 (693)
Q Consensus 118 ~l~~~---------~~~~~~rpv~l~~~~----------------~~~~~-----------------~~~~~~~~~~~~~ 155 (693)
|++.. ......|-..+.-.+ ..+.. .....+.......
T Consensus 680 Wlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~~~~s~dd~~~lafe~~~~l~~~ 759 (1330)
T KOG0949|consen 680 WLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRELSESEDDNVVLAFEPLSCLTLR 759 (1330)
T ss_pred HHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhccccCCCCceEeeccchhHHHHH
Confidence 99820 000000100000000 00000 0000000000000
Q ss_pred ------hcccc------------------------------c----------c------------cCCCCCh----hhHH
Q psy15878 156 ------YADNL------------------------------D----------Y------------SLTGSGP----DAVL 173 (693)
Q Consensus 156 ------~~~~~------------------------------~----------~------------~~~~~~~----~~l~ 173 (693)
..... . + ....... +.+.
T Consensus 760 k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k~Vnkqle~~~~ys~e~i~~nil 839 (1330)
T KOG0949|consen 760 KLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTKEVNKQLESVVDYSSEYILENIL 839 (1330)
T ss_pred HHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhhhhhhHhhhcccCcHHHHHHHHH
Confidence 00000 0 0 0000000 1122
Q ss_pred HHHh-----cCCceEEEeCChHHHHHHHHHhhhccCC-CCccc-------------chhhHH----HH------------
Q psy15878 174 HLVQ-----GNLMVLIFCSSKIACSNLALRLQFDRFP-GTKEY-------------KKQEKE----DL------------ 218 (693)
Q Consensus 174 ~l~~-----~~~~vLVF~~sr~~~e~la~~L~~~~~~-~~~~~-------------~~~~~~----~~------------ 218 (693)
.++. ..-++|+|-..|..|+.+|..+.....- ..+.. ..+.+. +.
T Consensus 840 ~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a~~r~Kt~e~~~k~~~~~ek~~~ 919 (1330)
T KOG0949|consen 840 DLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRARDREKTKESWIKESIAAEKSFQ 919 (1330)
T ss_pred HHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 2322 6679999999999999988876541100 00000 000000 00
Q ss_pred --------------------HHHH--HhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhh
Q psy15878 219 --------------------IEAL--KEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLA 276 (693)
Q Consensus 219 --------------------~~~l--~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~ 276 (693)
..++ ....-|+.+..+.+.+-.|+++||+||...+|..||-.||.|.+.||+||.||+
T Consensus 920 ~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLs 999 (1330)
T KOG0949|consen 920 MKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLS 999 (1330)
T ss_pred cccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHHHHHHHHhhcCceEEEEEeeehh
Confidence 0000 011113455677888899999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccC
Q psy15878 277 AGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHM 349 (693)
Q Consensus 277 ~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l 349 (693)
-|||.|..+||+-.+. -.+++..|.||+|||||.|+|..|.++.+--+. ..+.+++.+.++.+..+.
T Consensus 1000 LGiNMPCrTVvF~gDs---LQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~---~kv~rLlts~L~diqG~~ 1066 (1330)
T KOG0949|consen 1000 LGINMPCRTVVFAGDS---LQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPR---QKVQRLLTSLLPDIQGAY 1066 (1330)
T ss_pred cccCCCceeEEEeccc---cccCchhHHhhhccccccccccccceEEEeCcH---HHHHHHHHHhhhcccCCC
Confidence 9999999999988653 246889999999999999999999998886554 567788887777777765
No 75
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.91 E-value=1.4e-23 Score=243.34 Aligned_cols=279 Identities=20% Similarity=0.247 Sum_probs=199.9
Q ss_pred ChhhHHHHHHHHhhhhC--cEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchh-ccC-CCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFK--FYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLI-QEN-RIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~--~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~-~~~-~l~~i~lvVvDE~H~ 76 (693)
||+.|.+.|+++...++ +++..|+|++..........++++|+++||.+++.++.... ... .++++++||+||+|.
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt 206 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT 206 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee
Confidence 78999999999988888 88888999876444433334899999999999988443322 222 248899999999998
Q ss_pred cCCCCChHHHHHHHHHHhcc----CCCceEEEEcCcCCCHHHHHHhhcCCCc----cCCCCcccceeeEEeCceeeeecC
Q psy15878 77 LNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIEGITY----VENSRPTKHSEYVTVDKRVFQSFD 148 (693)
Q Consensus 77 l~d~~rg~~le~il~~l~~~----~~~~qii~lSATl~n~~~la~~l~~~~~----~~~~rpv~l~~~~~~~~~~~~~~~ 148 (693)
+- +.+|..+..++.||+.. +.++|+|++|||++|+.+++.=+....| ..+..|-.....+......+....
T Consensus 207 Yr-Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~ 285 (851)
T COG1205 207 YR-GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAE 285 (851)
T ss_pred cc-ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhh
Confidence 85 37999999999998754 3479999999999998888765543322 223333333332221111111000
Q ss_pred CCCchhhhcccccccCCCCChh----hHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHh
Q psy15878 149 GKSLTEIYADNLDYSLTGSGPD----AVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKE 224 (693)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~----~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 224 (693)
. + ...... .+..++.++-++|+|+.+++.++.+.......-..
T Consensus 286 ~--------~------r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~------------------- 332 (851)
T COG1205 286 S--------I------RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVR------------------- 332 (851)
T ss_pred h--------c------ccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhh-------------------
Confidence 0 0 011111 12223338999999999999999987544331000
Q ss_pred ccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccC-CHHHH
Q psy15878 225 ENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFI-SLNMY 303 (693)
Q Consensus 225 ~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~-s~~~~ 303 (693)
.. ..+...+..|||+++.++|..++..|++|++.++++|++++.|+|+.++..||...+ |. +..++
T Consensus 333 ~~---------~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~----P~~s~~~~ 399 (851)
T COG1205 333 EG---------GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGY----PGVSVLSF 399 (851)
T ss_pred cc---------hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCC----CCchHHHH
Confidence 00 001133899999999999999999999999999999999999999999999999887 44 89999
Q ss_pred HHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 304 KQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 304 ~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
+||+|||||.+ ..+..+.+...+
T Consensus 400 ~Q~~GRaGR~~--~~~l~~~v~~~~ 422 (851)
T COG1205 400 RQRAGRAGRRG--QESLVLVVLRSD 422 (851)
T ss_pred HHhhhhccCCC--CCceEEEEeCCC
Confidence 99999999999 566666666644
No 76
>KOG0344|consensus
Probab=99.89 E-value=3.4e-23 Score=218.92 Aligned_cols=274 Identities=22% Similarity=0.216 Sum_probs=189.1
Q ss_pred ChhhHHHHHHHHh--hhhCcEEEEeeccCCCCCccc-cccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEeccccc
Q psy15878 1 MVHEKYQSLAKAA--EEFKFYLEEYAGVKGQYPPTK-RQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHML 77 (693)
Q Consensus 1 L~~e~~~~l~~~~--~~~~~~v~~~~G~~~~~~~~~-~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l 77 (693)
|+.|.+.++.++. ...++++..+........... .....++|+|.||-++..++..-.-.-.+..+.++|+||++++
T Consensus 221 La~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~l 300 (593)
T KOG0344|consen 221 LAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLL 300 (593)
T ss_pred HHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhh
Confidence 6788999999988 666777666654422111111 1125689999999985433332101125689999999999999
Q ss_pred CCC-CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhh
Q psy15878 78 NEP-QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIY 156 (693)
Q Consensus 78 ~d~-~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 156 (693)
.+. .+-.++..+++.+. +++..+=++|||++ ..+.+|.........-.++... +........
T Consensus 301 fe~~~f~~Qla~I~sac~--s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~~-------------~sa~~~V~Q 363 (593)
T KOG0344|consen 301 FEPEFFVEQLADIYSACQ--SPDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGLR-------------NSANETVDQ 363 (593)
T ss_pred hChhhHHHHHHHHHHHhc--Ccchhhhhhhcccc--HHHHHHHHHhhccceeEEEecc-------------hhHhhhhhh
Confidence 987 66667777776654 47788889999986 4566665321110000011000 000000000
Q ss_pred cccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHH
Q psy15878 157 ADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNL 234 (693)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 234 (693)
.+-++ .+...+.-.+.+++. -..++|||+.+.+.|..+...|.. +-
T Consensus 364 elvF~-gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~--~~----------------------------- 411 (593)
T KOG0344|consen 364 ELVFC-GSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI--YD----------------------------- 411 (593)
T ss_pred hheee-ecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh--cc-----------------------------
Confidence 00011 112223334555555 467999999999999999988842 11
Q ss_pred HHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCC
Q psy15878 235 EECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTG 314 (693)
Q Consensus 235 ~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g 314 (693)
...|.+.||..++.+|.++.++||.|++.||+||+++++|+|+.+++.||++|+ |-+..+|+||+||+||+|
T Consensus 412 ----~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~----p~s~~syihrIGRtgRag 483 (593)
T KOG0344|consen 412 ----NINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDF----PQSDLSYIHRIGRTGRAG 483 (593)
T ss_pred ----CcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCC----CchhHHHHHHhhccCCCC
Confidence 123999999999999999999999999999999999999999999999999997 678999999999999999
Q ss_pred CCCCCcEEEEecccccHHHH
Q psy15878 315 LQESGESIMLCKTMQDFLRF 334 (693)
Q Consensus 315 ~d~~G~~i~l~~~~~~~~~~ 334 (693)
.+|.+|.|++.. +...+
T Consensus 484 --~~g~Aitfytd~-d~~~i 500 (593)
T KOG0344|consen 484 --RSGKAITFYTDQ-DMPRI 500 (593)
T ss_pred --CCcceEEEeccc-cchhh
Confidence 799999999987 54443
No 77
>KOG0346|consensus
Probab=99.89 E-value=2.2e-22 Score=204.69 Aligned_cols=264 Identities=19% Similarity=0.226 Sum_probs=185.8
Q ss_pred ChhhHHHHHHHHhhhh--CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhcc-CCCCcccEEEEeccccc
Q psy15878 1 MVHEKYQSLAKAAEEF--KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE-NRIDEIGLIVIDEFHML 77 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~--~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~-~~l~~i~lvVvDE~H~l 77 (693)
||+|.|..+.++.... .+++.-++.++++........+.++|+|+||.++...+.. .. ..++.++++|+|||+++
T Consensus 105 L~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~--~~~~~~~~l~~LVvDEADLl 182 (569)
T KOG0346|consen 105 LAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAA--GVLEYLDSLSFLVVDEADLL 182 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhh--ccchhhhheeeEEechhhhh
Confidence 6788888888874443 3566666666665544444458899999999996544432 11 35689999999999999
Q ss_pred CCCCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhh
Q psy15878 78 NEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIY 156 (693)
Q Consensus 78 ~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 156 (693)
..-++...+..+.+. +++..|.++||||+.+ ...+.+.+-.. |+.+.- ...-.. ..+.+.
T Consensus 183 lsfGYeedlk~l~~~---LPr~~Q~~LmSATl~dDv~~LKkL~l~n-------PviLkl----~e~el~--~~dqL~--- 243 (569)
T KOG0346|consen 183 LSFGYEEDLKKLRSH---LPRIYQCFLMSATLSDDVQALKKLFLHN-------PVILKL----TEGELP--NPDQLT--- 243 (569)
T ss_pred hhcccHHHHHHHHHh---CCchhhheeehhhhhhHHHHHHHHhccC-------CeEEEe----ccccCC--Ccccce---
Confidence 865555555555554 4788999999999974 55555543221 222110 000000 000000
Q ss_pred cccccccCCCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchH
Q psy15878 157 ADNLDYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTN 233 (693)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (693)
......+ ...++-.+..++. -.+++|||+||...|.++.-.|.+-|+.
T Consensus 244 Qy~v~cs-e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGik---------------------------- 294 (569)
T KOG0346|consen 244 QYQVKCS-EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIK---------------------------- 294 (569)
T ss_pred EEEEEec-cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcH----------------------------
Confidence 0000000 2233333444444 6889999999999999998888773222
Q ss_pred HHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecc-----------------------------------hhhcc
Q psy15878 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTS-----------------------------------TLAAG 278 (693)
Q Consensus 234 L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~-----------------------------------~l~~G 278 (693)
.+.++|.||..-|--|.+.|..|..+++|||+ -.++|
T Consensus 295 --------sciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRG 366 (569)
T KOG0346|consen 295 --------SCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRG 366 (569)
T ss_pred --------hhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhcc
Confidence 45689999999999999999999999999999 35789
Q ss_pred cCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 279 VNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 279 vnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
||+..+..|+++++ |.+...|+||+||++|.+ .+|.++.|+.+.
T Consensus 367 IDF~~V~~VlNFD~----P~t~~sYIHRvGRTaRg~--n~GtalSfv~P~ 410 (569)
T KOG0346|consen 367 IDFHHVSNVLNFDF----PETVTSYIHRVGRTARGN--NKGTALSFVSPK 410 (569)
T ss_pred ccchheeeeeecCC----CCchHHHHHhccccccCC--CCCceEEEecch
Confidence 99999999999997 789999999999999999 799999999887
No 78
>KOG0337|consensus
Probab=99.88 E-value=4.6e-23 Score=208.72 Aligned_cols=271 Identities=16% Similarity=0.156 Sum_probs=202.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|..+-++++++..+++...+.|+-...++......++|||++||+++..+.-++ .-.++.+.+||+||++.+.+.
T Consensus 102 La~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem--~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 102 LALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM--TLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe--eccccceeeeeehhhhHHHhh
Confidence 577888889999999999999888876555555555578999999999965443332 135789999999999999988
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNL 160 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (693)
++...+..++.++ +.+.|.+.||||+|+ ++.++-.+-+.. |+-++ +.+...+ ...-...+
T Consensus 180 gfqeql~e~l~rl---~~~~QTllfSatlp~--~lv~fakaGl~~----p~lVR--ldvetki---------se~lk~~f 239 (529)
T KOG0337|consen 180 GFQEQLHEILSRL---PESRQTLLFSATLPR--DLVDFAKAGLVP----PVLVR--LDVETKI---------SELLKVRF 239 (529)
T ss_pred hhHHHHHHHHHhC---CCcceEEEEeccCch--hhHHHHHccCCC----CceEE--eehhhhc---------chhhhhhe
Confidence 8888998888886 567799999999985 444444332221 22222 1111000 00001111
Q ss_pred cccCCCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHH
Q psy15878 161 DYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEEC 237 (693)
Q Consensus 161 ~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~ 237 (693)
.+.....+...+..++. ...+++|||+|+..++.+...|...++
T Consensus 240 ~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~--------------------------------- 286 (529)
T KOG0337|consen 240 FRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGG--------------------------------- 286 (529)
T ss_pred eeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCC---------------------------------
Confidence 11112333445555555 455899999999999999998887433
Q ss_pred HhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCC
Q psy15878 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQE 317 (693)
Q Consensus 238 ~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~ 317 (693)
++..++|.|++..|..-.+.|+.++-.++|.|+++++|+|+|-..-||++++ |.+..-|.||+||+.|.| .
T Consensus 287 ---~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~----p~~~klFvhRVgr~arag--r 357 (529)
T KOG0337|consen 287 ---EGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDF----PPDDKLFVHRVGRVARAG--R 357 (529)
T ss_pred ---CccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccC----CCCCceEEEEecchhhcc--c
Confidence 3778899999999999999999999999999999999999999999999987 556778999999999999 7
Q ss_pred CCcEEEEecccccHHHHHH
Q psy15878 318 SGESIMLCKTMQDFLRFSS 336 (693)
Q Consensus 318 ~G~~i~l~~~~~~~~~~~~ 336 (693)
.|.+|-++.+. +..++..
T Consensus 358 tg~aYs~V~~~-~~~yl~D 375 (529)
T KOG0337|consen 358 TGRAYSLVAST-DDPYLLD 375 (529)
T ss_pred cceEEEEEecc-cchhhhh
Confidence 89999999888 6555543
No 79
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.88 E-value=1.1e-21 Score=218.96 Aligned_cols=254 Identities=13% Similarity=0.129 Sum_probs=158.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|..+.|++++......+..+.||.... .+++|+|+||+++. +. ...+++++++||+||||++..
T Consensus 170 L~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~---~~--~~~~~~~~~~iIvDEaH~~~~- 236 (501)
T PHA02558 170 LVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAV---KQ--PKEWFDQFGMVIVDECHLFTG- 236 (501)
T ss_pred HHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHh---hc--hhhhccccCEEEEEchhcccc-
Confidence 567888888877643334444444443211 35799999999853 22 123678999999999999874
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHH----HHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCC-chhh
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNIN----ALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKS-LTEI 155 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~----~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~-~~~~ 155 (693)
..+..++..+ .+..+++|||||+.+.+ .+..++|......+.... ..........+..+..... ....
T Consensus 237 ---~~~~~il~~~---~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~l-i~~g~l~~~~~~~v~~~~~~~~~~ 309 (501)
T PHA02558 237 ---KSLTSIITKL---DNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQL-MEEGQVTDLKINSIFLRYPDEDRV 309 (501)
T ss_pred ---hhHHHHHHhh---hccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHH-HhCCCcCCceEEEEeccCCHHHhh
Confidence 3455555554 34568999999997522 123344421111000000 0000000000000000000 0000
Q ss_pred hccccccc-------CCCCChhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHh
Q psy15878 156 YADNLDYS-------LTGSGPDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKE 224 (693)
Q Consensus 156 ~~~~~~~~-------~~~~~~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 224 (693)
......|. ........+..++. .+.+++|||++.++|+.+++.|.+.+.
T Consensus 310 ~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~-------------------- 369 (501)
T PHA02558 310 KLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYD-------------------- 369 (501)
T ss_pred hhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCC--------------------
Confidence 00000000 01112233333332 678999999999999999999987322
Q ss_pred ccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEec-chhhcccCCCCcEEEEecCcCCCccCCHHHH
Q psy15878 225 ENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCT-STLAAGVNLPAQRVIIRDSYVGRDFISLNMY 303 (693)
Q Consensus 225 ~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT-~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~ 303 (693)
.+.++||+++.++|..+++.|++|...||||| +++++|+|+|.+++||.... +-|...|
T Consensus 370 ----------------~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p----~~s~~~~ 429 (501)
T PHA02558 370 ----------------KVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHP----SKSKIIV 429 (501)
T ss_pred ----------------CEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecC----Ccchhhh
Confidence 38999999999999999999999999999999 89999999999999997642 4578899
Q ss_pred HHHhhccCCCC
Q psy15878 304 KQMVGRAGRTG 314 (693)
Q Consensus 304 ~Qr~GRaGR~g 314 (693)
.||+||++|.+
T Consensus 430 ~QriGR~~R~~ 440 (501)
T PHA02558 430 LQSIGRVLRKH 440 (501)
T ss_pred hhhhhccccCC
Confidence 99999999998
No 80
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.88 E-value=2e-21 Score=207.63 Aligned_cols=253 Identities=15% Similarity=0.114 Sum_probs=148.6
Q ss_pred ChhhHHHHHHHHhhhh----CcEEEEeeccCCCC-Ccc-------------------ccccCCCcEEEEcccchHHHHhc
Q psy15878 1 MVHEKYQSLAKAAEEF----KFYLEEYAGVKGQY-PPT-------------------KRQLNKKSIYICTIEKGSKLIGS 56 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~----~~~v~~~~G~~~~~-~~~-------------------~~~~~~~~IiV~Tpek~~~Ll~~ 56 (693)
|+.|+++.++.+...+ +..+..++|.+... ... ......++|+++||+.++.+++.
T Consensus 51 L~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~ 130 (357)
T TIGR03158 51 LIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRF 130 (357)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhh
Confidence 5788888888887543 56777788763211 000 00124789999999999988876
Q ss_pred hhccC------CCCcccEEEEecccccCCCCChHHHHH---HHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCC-ccC
Q psy15878 57 LIQEN------RIDEIGLIVIDEFHMLNEPQRGPILEC---VVSKVLYLKKSIQIFAMSATIGNINALSTFIEGIT-YVE 126 (693)
Q Consensus 57 l~~~~------~l~~i~lvVvDE~H~l~d~~rg~~le~---il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~-~~~ 126 (693)
+.... .+.++++||+||+|.++... ...+.. ...-++......++++||||++. .+.+++.... +..
T Consensus 131 ~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~ 207 (357)
T TIGR03158 131 AYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQ-LVGMLFLLAYMQLIRFFECRRKFVFLSATPDP--ALILRLQNAKQAGV 207 (357)
T ss_pred hccCcccchhhhhcCCCEEEEecccccCccc-chhhhhhhHHHHHHHhhhcCCcEEEEecCCCH--HHHHHHHhccccCc
Confidence 54222 25899999999999987532 222221 11111111235799999999974 3333332110 000
Q ss_pred CCCcccceeeEEeCceeeeecC------C-C--Cch-hhhccccccc-CCCCCh-------hhHHHHHh--cCCceEEEe
Q psy15878 127 NSRPTKHSEYVTVDKRVFQSFD------G-K--SLT-EIYADNLDYS-LTGSGP-------DAVLHLVQ--GNLMVLIFC 186 (693)
Q Consensus 127 ~~rpv~l~~~~~~~~~~~~~~~------~-~--~~~-~~~~~~~~~~-~~~~~~-------~~l~~l~~--~~~~vLVF~ 186 (693)
|+. .+.+.-|..+. . . .+. ....+...+. ....+. +.+.+.+. +++++||||
T Consensus 208 ---~~~-----~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~ 279 (357)
T TIGR03158 208 ---KIA-----PIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIIL 279 (357)
T ss_pred ---eee-----eecCcccccCCChhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 000 00000000000 0 0 000 0000000000 001111 11222221 567999999
Q ss_pred CChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCC
Q psy15878 187 SSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTL 266 (693)
Q Consensus 187 ~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i 266 (693)
+|++.|+.++..|.+.+.. ..+..+||.+++.+|..+ +..
T Consensus 280 nt~~~~~~l~~~L~~~~~~----------------------------------~~~~~l~g~~~~~~R~~~------~~~ 319 (357)
T TIGR03158 280 DSLDEVNRLSDLLQQQGLG----------------------------------DDIGRITGFAPKKDRERA------MQF 319 (357)
T ss_pred CCHHHHHHHHHHHhhhCCC----------------------------------ceEEeeecCCCHHHHHHh------ccC
Confidence 9999999999999862211 237789999999988643 478
Q ss_pred eEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccC
Q psy15878 267 QIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAG 311 (693)
Q Consensus 267 ~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaG 311 (693)
+|||||+++++|||+|.+.||+ . |.+..+|+||+||+|
T Consensus 320 ~iLVaTdv~~rGiDi~~~~vi~-~------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 320 DILLGTSTVDVGVDFKRDWLIF-S------ARDAAAFWQRLGRLG 357 (357)
T ss_pred CEEEEecHHhcccCCCCceEEE-C------CCCHHHHhhhcccCC
Confidence 9999999999999999985553 2 558999999999998
No 81
>KOG0351|consensus
Probab=99.86 E-value=2.7e-21 Score=222.58 Aligned_cols=270 Identities=19% Similarity=0.225 Sum_probs=194.2
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccc----cC--CCcEEEEcccchHH---HHhchhccCCCCcccEEEE
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQ----LN--KKSIYICTIEKGSK---LIGSLIQENRIDEIGLIVI 71 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~----~~--~~~IiV~Tpek~~~---Ll~~l~~~~~l~~i~lvVv 71 (693)
|++.++..| ...+++...++++.+...+...+ .+ ..+|+..|||++.. +...+.....-.-+.++||
T Consensus 316 Lm~DQv~~L----~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vI 391 (941)
T KOG0351|consen 316 LMQDQVTHL----SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVI 391 (941)
T ss_pred HHHHHHHhh----hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEe
Confidence 344455444 34678888888876543222111 13 67999999999643 1111111112233899999
Q ss_pred ecccccCCCC--ChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHHhhcCC---CccCCCCcccceeeEEeCceee
Q psy15878 72 DEFHMLNEPQ--RGPILECVVSKVLYLKKSIQIFAMSATIGN--INALSTFIEGI---TYVENSRPTKHSEYVTVDKRVF 144 (693)
Q Consensus 72 DE~H~l~d~~--rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~~l~~~---~~~~~~rpv~l~~~~~~~~~~~ 144 (693)
||||+++.|+ |.+.+..+.. ++...+...+|+||||... .+++.+-|+-. ++...+.+-.+...|.
T Consensus 392 DEAHCVSqWgHdFRp~Yk~l~~-l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~------ 464 (941)
T KOG0351|consen 392 DEAHCVSQWGHDFRPSYKRLGL-LRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVS------ 464 (941)
T ss_pred cHHHHhhhhcccccHHHHHHHH-HHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEE------
Confidence 9999999776 7777766443 3333455899999999853 57788877643 3444443333322221
Q ss_pred eecCCCCchhhhcccccccCCCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHH
Q psy15878 145 QSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEA 221 (693)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~ 221 (693)
+.. .......+..... +..+.||||.+|++|+.++..|...+
T Consensus 465 ---~k~--------------~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~------------------ 509 (941)
T KOG0351|consen 465 ---PKT--------------DKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLG------------------ 509 (941)
T ss_pred ---ecc--------------CccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhc------------------
Confidence 110 0111111222222 88999999999999999999998722
Q ss_pred HHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHH
Q psy15878 222 LKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLN 301 (693)
Q Consensus 222 l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~ 301 (693)
...+++|+||+..+|..|.+.|-.++++|+|||=.+.+|||-|+++.||++.. |-|..
T Consensus 510 ------------------~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~l----Pks~E 567 (941)
T KOG0351|consen 510 ------------------KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSL----PKSFE 567 (941)
T ss_pred ------------------hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCC----chhHH
Confidence 23788999999999999999999999999999999999999999999999986 77999
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCC
Q psy15878 302 MYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAG 341 (693)
Q Consensus 302 ~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~ 341 (693)
.|.|-+|||||.| ....|++++... +...+..++...
T Consensus 568 ~YYQE~GRAGRDG--~~s~C~l~y~~~-D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 568 GYYQEAGRAGRDG--LPSSCVLLYGYA-DISELRRLLTSG 604 (941)
T ss_pred HHHHhccccCcCC--CcceeEEecchh-HHHHHHHHHHcc
Confidence 9999999999999 589999999998 888888888776
No 82
>KOG0354|consensus
Probab=99.86 E-value=8.6e-21 Score=209.12 Aligned_cols=118 Identities=18% Similarity=0.250 Sum_probs=93.5
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
+..++||||.+|..|..+...|.+ ...+ .. +. . .++..|-.--..||++.++.++
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~--~~~~-~i------------r~-------~---~fiGq~~s~~~~gmtqk~Q~ev 466 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQ--LHEL-GI------------KA-------E---IFIGQGKSTQSTGMTQKEQKEV 466 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHh--hhhc-cc------------cc-------c---eeeeccccccccccCHHHHHHH
Confidence 678999999999999999998874 1100 00 00 0 0011111122269999999999
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
++.|++|.++||||||++++|+|+|.+++||.+++. .++...+||.|| ||.. .|+|+++++..
T Consensus 467 l~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~----snpIrmIQrrGR-gRa~---ns~~vll~t~~ 529 (746)
T KOG0354|consen 467 LDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYS----SNPIRMVQRRGR-GRAR---NSKCVLLTTGS 529 (746)
T ss_pred HHHHhCCCccEEEEecchhccCCcccccEEEEecCC----ccHHHHHHHhcc-cccc---CCeEEEEEcch
Confidence 999999999999999999999999999999999874 368899999999 9998 89999999854
No 83
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.85 E-value=9.6e-20 Score=198.07 Aligned_cols=257 Identities=20% Similarity=0.282 Sum_probs=171.2
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccc----cCCCcEEEEcccchHHHHhchhcc-CCCCcccEEEEeccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQ----LNKKSIYICTIEKGSKLIGSLIQE-NRIDEIGLIVIDEFH 75 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~----~~~~~IiV~Tpek~~~Ll~~l~~~-~~l~~i~lvVvDE~H 75 (693)
||.|+|..++++...+|++|..++|+.......... -+..+|+|+| ..++++ -.++++++||+||=|
T Consensus 323 LA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT--------HALiQd~V~F~~LgLVIiDEQH 394 (677)
T COG1200 323 LAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT--------HALIQDKVEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc--------chhhhcceeecceeEEEEeccc
Confidence 689999999999999999999999986433322211 2569999999 334433 467999999999999
Q ss_pred ccCCCCChHHHHHHHHHHhccCC-CceEEEEcCcCCCHHHHH--HhhcCCCccCCCCc---ccceeeEEeCceeeeecCC
Q psy15878 76 MLNEPQRGPILECVVSKVLYLKK-SIQIFAMSATIGNINALS--TFIEGITYVENSRP---TKHSEYVTVDKRVFQSFDG 149 (693)
Q Consensus 76 ~l~d~~rg~~le~il~~l~~~~~-~~qii~lSATl~n~~~la--~~l~~~~~~~~~rp---v~l~~~~~~~~~~~~~~~~ 149 (693)
..+ ..=...+ +.... .+.++.||||+- +..++ .|=+-++-.-+.-| .|+.... ++..
T Consensus 395 RFG-----V~QR~~L---~~KG~~~Ph~LvMTATPI-PRTLAlt~fgDldvS~IdElP~GRkpI~T~~--------i~~~ 457 (677)
T COG1200 395 RFG-----VHQRLAL---REKGEQNPHVLVMTATPI-PRTLALTAFGDLDVSIIDELPPGRKPITTVV--------IPHE 457 (677)
T ss_pred ccc-----HHHHHHH---HHhCCCCCcEEEEeCCCc-hHHHHHHHhccccchhhccCCCCCCceEEEE--------eccc
Confidence 765 2222222 22244 589999999974 33333 22111111111111 1111111 1000
Q ss_pred CCchhhhcccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCc
Q psy15878 150 KSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGK 229 (693)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (693)
. ...-.+.+.+-+..|.|+.|.||-..+.|.+--.- ..+..++++
T Consensus 458 ~--------------~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~---------------a~~~~~~L~------ 502 (677)
T COG1200 458 R--------------RPEVYERIREEIAKGRQAYVVCPLIEESEKLELQA---------------AEELYEELK------ 502 (677)
T ss_pred c--------------HHHHHHHHHHHHHcCCEEEEEeccccccccchhhh---------------HHHHHHHHH------
Confidence 0 00112233444449999999999887766433111 111112222
Q ss_pred cchHHHHHH-hhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhh
Q psy15878 230 LSTNLEECI-LYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVG 308 (693)
Q Consensus 230 ~~~~L~~~~-~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~G 308 (693)
... ...|+..||.|+.++++.|.++|++|+++|||||++.+.|||+|+.++.|-.+. +....++..|-.|
T Consensus 503 ------~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~A---ERFGLaQLHQLRG 573 (677)
T COG1200 503 ------SFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENA---ERFGLAQLHQLRG 573 (677)
T ss_pred ------HHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEech---hhhhHHHHHHhcc
Confidence 111 234999999999999999999999999999999999999999999887765442 4567999999999
Q ss_pred ccCCCCCCCCCcEEEEeccc
Q psy15878 309 RAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 309 RaGR~g~d~~G~~i~l~~~~ 328 (693)
|+||.+ ..+.|++++.++
T Consensus 574 RVGRG~--~qSyC~Ll~~~~ 591 (677)
T COG1200 574 RVGRGD--LQSYCVLLYKPP 591 (677)
T ss_pred ccCCCC--cceEEEEEeCCC
Confidence 999998 689999999877
No 84
>KOG0352|consensus
Probab=99.83 E-value=1.9e-20 Score=189.80 Aligned_cols=272 Identities=18% Similarity=0.244 Sum_probs=182.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccc------cccCCCcEEEEcccchH-----HHHhchhccCCCCcccEE
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTK------RQLNKKSIYICTIEKGS-----KLIGSLIQENRIDEIGLI 69 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~------~~~~~~~IiV~Tpek~~-----~Ll~~l~~~~~l~~i~lv 69 (693)
|.++++.+|.++ .+++..+....+..+... +...+..++.-|||.+. .+++.+.+. +.++++
T Consensus 73 LIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r---~~L~Y~ 145 (641)
T KOG0352|consen 73 LIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANR---DVLRYI 145 (641)
T ss_pred HHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhh---ceeeeE
Confidence 345666666554 445544544443322211 11245678999999864 355554433 567899
Q ss_pred EEecccccCCCC--ChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHHhhcCCCccCCCCcccceeeEEeCcee-e
Q psy15878 70 VIDEFHMLNEPQ--RGPILECVVSKVLYLKKSIQIFAMSATIGN--INALSTFIEGITYVENSRPTKHSEYVTVDKRV-F 144 (693)
Q Consensus 70 VvDE~H~l~d~~--rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~-~ 144 (693)
||||+|+++.|+ |.+.+.. +-.|+...++...++|+||... -+++..-|.-. .||.+-..-.+...+ |
T Consensus 146 vVDEAHCVSQWGHDFRPDYL~-LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~------~PVAiFkTP~FR~NLFY 218 (641)
T KOG0352|consen 146 VVDEAHCVSQWGHDFRPDYLT-LGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLR------NPVAIFKTPTFRDNLFY 218 (641)
T ss_pred EechhhhHhhhccccCcchhh-hhhHHhhCCCCceEEeecccChhHHHHHHHHHhhc------CcHHhccCcchhhhhhH
Confidence 999999999776 6676654 3445555678899999999853 45565554321 111110000000001 1
Q ss_pred eecCCCCchhhhcccccccCCCCChhhHHHHHh---------------cCCceEEEeCChHHHHHHHHHhhhccCCCCcc
Q psy15878 145 QSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ---------------GNLMVLIFCSSKIACSNLALRLQFDRFPGTKE 209 (693)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------------~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~ 209 (693)
.+ .+...+ ......+.+... -.+.-||||.||..||.+|-.|...|+.
T Consensus 219 D~------~~K~~I-------~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~---- 281 (641)
T KOG0352|consen 219 DN------HMKSFI-------TDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIP---- 281 (641)
T ss_pred HH------HHHHHh-------hhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcc----
Confidence 10 000000 011111111111 3467899999999999999998874433
Q ss_pred cchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEe
Q psy15878 210 YKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR 289 (693)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~ 289 (693)
...+|+||-..||.+|.+.+-+|++.||+||..+.+|||-|++++||+
T Consensus 282 --------------------------------A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH 329 (641)
T KOG0352|consen 282 --------------------------------AMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH 329 (641)
T ss_pred --------------------------------hHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe
Confidence 556899999999999999999999999999999999999999999999
Q ss_pred cCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCC
Q psy15878 290 DSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGP 342 (693)
Q Consensus 290 ~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~ 342 (693)
++. +-+++-|.|-.|||||.| ....|-+++..+ +.+.+.-++..+.
T Consensus 330 W~~----~qn~AgYYQESGRAGRDG--k~SyCRLYYsR~-D~~~i~FLi~~e~ 375 (641)
T KOG0352|consen 330 WSP----SQNLAGYYQESGRAGRDG--KRSYCRLYYSRQ-DKNALNFLVSGEL 375 (641)
T ss_pred cCc----hhhhHHHHHhccccccCC--Cccceeeeeccc-chHHHHHHHhhHH
Confidence 874 678999999999999999 688999999888 8877766665554
No 85
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=1.5e-19 Score=203.38 Aligned_cols=268 Identities=16% Similarity=0.167 Sum_probs=160.4
Q ss_pred hhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchh----ccCCC--CcccEEEEeccc
Q psy15878 2 VHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLI----QENRI--DEIGLIVIDEFH 75 (693)
Q Consensus 2 ~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~----~~~~l--~~i~lvVvDE~H 75 (693)
+.|-.++|.++..-....+..++|+... ......+|+|+|+..+.....+.. ...++ ..+++||+||+|
T Consensus 311 v~QW~~ef~~~~~l~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH 385 (732)
T TIGR00603 311 VEQWKQQFKMWSTIDDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVH 385 (732)
T ss_pred HHHHHHHHHHhcCCCCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccc
Confidence 4455555665543234567777775321 111457899999987532111100 01223 578999999999
Q ss_pred ccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCC----HHHHHHhhcCCCccCCCCcccceeeEE-eCceeeeecCCC
Q psy15878 76 MLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN----INALSTFIEGITYVENSRPTKHSEYVT-VDKRVFQSFDGK 150 (693)
Q Consensus 76 ~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n----~~~la~~l~~~~~~~~~rpv~l~~~~~-~~~~~~~~~~~~ 150 (693)
++.. ..+..++..+ .....+|||||+.. ..++...+|...|..+|....-..++. +......++...
T Consensus 386 ~lpA----~~fr~il~~l----~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~ 457 (732)
T TIGR00603 386 VVPA----AMFRRVLTIV----QAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTP 457 (732)
T ss_pred cccH----HHHHHHHHhc----CcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCH
Confidence 9853 3444445443 23467999999962 333444455554444332211111110 000001111100
Q ss_pred Cc--hhhhc---c-cccccCCCCChhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHH
Q psy15878 151 SL--TEIYA---D-NLDYSLTGSGPDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIE 220 (693)
Q Consensus 151 ~~--~~~~~---~-~~~~~~~~~~~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~ 220 (693)
.. .+... . ...+.....+...+..++. .+.++||||.+...++.++..|.
T Consensus 458 ~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-------------------- 517 (732)
T TIGR00603 458 EFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-------------------- 517 (732)
T ss_pred HHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC--------------------
Confidence 00 00000 0 0001112223334444444 67899999999988877776542
Q ss_pred HHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCC-CCeEEEecchhhcccCCCCcEEEEecCcCCCccCC
Q psy15878 221 ALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAG-TLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFIS 299 (693)
Q Consensus 221 ~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g-~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s 299 (693)
+.++||+++..+|..+++.|++| .+++||+|+++.+|+|+|++++||..+.. +-|
T Consensus 518 ---------------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~---~gS 573 (732)
T TIGR00603 518 ---------------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSH---YGS 573 (732)
T ss_pred ---------------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCC---CCC
Confidence 55689999999999999999975 88999999999999999999999986531 238
Q ss_pred HHHHHHHhhccCCCCCCCCCcE-------EEEeccc
Q psy15878 300 LNMYKQMVGRAGRTGLQESGES-------IMLCKTM 328 (693)
Q Consensus 300 ~~~~~Qr~GRaGR~g~d~~G~~-------i~l~~~~ 328 (693)
..+|.||+||++|++. .|.+ |.++++.
T Consensus 574 ~~q~iQRlGRilR~~~--~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 574 RRQEAQRLGRILRAKK--GSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred HHHHHHHhcccccCCC--CCccccccceEEEEecCC
Confidence 9999999999999983 3443 6677665
No 86
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=3.1e-19 Score=202.78 Aligned_cols=116 Identities=24% Similarity=0.260 Sum_probs=100.7
Q ss_pred hhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEE
Q psy15878 169 PDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAY 244 (693)
Q Consensus 169 ~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~ 244 (693)
...+...+. .+.|+||||+|++.++.++..|.+.++. +..
T Consensus 414 ~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~------------------------------------~~~ 457 (790)
T PRK09200 414 YKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIP------------------------------------HNL 457 (790)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCC------------------------------------EEE
Confidence 344544443 7889999999999999999999885443 888
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCC---CCcE-----EEEecCcCCCccCCHHHHHHHhhccCCCCCC
Q psy15878 245 HHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNL---PAQR-----VIIRDSYVGRDFISLNMYKQMVGRAGRTGLQ 316 (693)
Q Consensus 245 ~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnl---p~~~-----vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d 316 (693)
+||.+...++..+..+++.| +|+|||+++++|+|+ |.+. +||+++. |.+...|.||+||+||.|
T Consensus 458 L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~----p~s~r~y~qr~GRtGR~G-- 529 (790)
T PRK09200 458 LNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTER----MESRRVDLQLRGRSGRQG-- 529 (790)
T ss_pred ecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccC----CCCHHHHHHhhccccCCC--
Confidence 99999999999888888877 799999999999999 6888 9999875 779999999999999999
Q ss_pred CCCcEEEEeccc
Q psy15878 317 ESGESIMLCKTM 328 (693)
Q Consensus 317 ~~G~~i~l~~~~ 328 (693)
.+|.++.+++..
T Consensus 530 ~~G~s~~~is~e 541 (790)
T PRK09200 530 DPGSSQFFISLE 541 (790)
T ss_pred CCeeEEEEEcch
Confidence 799999998766
No 87
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.82 E-value=3.9e-19 Score=203.50 Aligned_cols=245 Identities=18% Similarity=0.259 Sum_probs=179.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccc----cCCCcEEEEcccchHHHHhchh-ccCCCCcccEEEEeccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQ----LNKKSIYICTIEKGSKLIGSLI-QENRIDEIGLIVIDEFH 75 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~----~~~~~IiV~Tpek~~~Ll~~l~-~~~~l~~i~lvVvDE~H 75 (693)
||+|+|+.|++.++.++++|..++--.+..++.... -++.||+|+| .+++ .+-.+++++++||||=|
T Consensus 655 LA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT--------HrLL~kdv~FkdLGLlIIDEEq 726 (1139)
T COG1197 655 LAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT--------HRLLSKDVKFKDLGLLIIDEEQ 726 (1139)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec--------hHhhCCCcEEecCCeEEEechh
Confidence 799999999999999999999988655433322211 2689999999 3444 34467999999999999
Q ss_pred ccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHH-HHhhcCCC---c-cCCCCcccceeeEEeCceeeeecCCC
Q psy15878 76 MLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINAL-STFIEGIT---Y-VENSRPTKHSEYVTVDKRVFQSFDGK 150 (693)
Q Consensus 76 ~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~l-a~~l~~~~---~-~~~~rpv~l~~~~~~~~~~~~~~~~~ 150 (693)
+.+ ..-..-+. .+..+.-++-||||+-. ..+ ....|..- + .+..+..|+..++.
T Consensus 727 RFG-----Vk~KEkLK---~Lr~~VDvLTLSATPIP-RTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~------------ 785 (1139)
T COG1197 727 RFG-----VKHKEKLK---ELRANVDVLTLSATPIP-RTLNMSLSGIRDLSVIATPPEDRLPVKTFVS------------ 785 (1139)
T ss_pred hcC-----ccHHHHHH---HHhccCcEEEeeCCCCc-chHHHHHhcchhhhhccCCCCCCcceEEEEe------------
Confidence 765 33333334 44588999999999742 111 12222221 1 12222233333331
Q ss_pred CchhhhcccccccCCCCChh----hHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhcc
Q psy15878 151 SLTEIYADNLDYSLTGSGPD----AVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEEN 226 (693)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~----~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (693)
..++. .|..-+..+||+...+|..+..+.++..|.+ .+ |+
T Consensus 786 ---------------~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~--LV-PE------------------ 829 (1139)
T COG1197 786 ---------------EYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRE--LV-PE------------------ 829 (1139)
T ss_pred ---------------cCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHH--hC-Cc------------------
Confidence 12222 3333344899999999999999999999988 55 22
Q ss_pred CCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHH
Q psy15878 227 DGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQM 306 (693)
Q Consensus 227 ~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr 306 (693)
..|++-||.|+..+-+.++..|-+|..+|||||++.+.|||+|+.+-+|-... +.+..++..|.
T Consensus 830 -------------arI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~A---D~fGLsQLyQL 893 (1139)
T COG1197 830 -------------ARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERA---DKFGLAQLYQL 893 (1139)
T ss_pred -------------eEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecc---ccccHHHHHHh
Confidence 23999999999999999999999999999999999999999999776665432 35679999999
Q ss_pred hhccCCCCCCCCCcEEEEeccc
Q psy15878 307 VGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 307 ~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
.||+||.. ..|.||+++++.
T Consensus 894 RGRVGRS~--~~AYAYfl~p~~ 913 (1139)
T COG1197 894 RGRVGRSN--KQAYAYFLYPPQ 913 (1139)
T ss_pred ccccCCcc--ceEEEEEeecCc
Confidence 99999998 689999999875
No 88
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.81 E-value=1.7e-18 Score=195.03 Aligned_cols=116 Identities=24% Similarity=0.235 Sum_probs=97.2
Q ss_pred ChhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceE
Q psy15878 168 GPDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVA 243 (693)
Q Consensus 168 ~~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~ 243 (693)
+...+.+.+. .+.|+||||+|+..++.++..|.+.++. +.
T Consensus 409 K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~------------------------------------~~ 452 (762)
T TIGR03714 409 KLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIP------------------------------------HN 452 (762)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCC------------------------------------EE
Confidence 3444555443 6899999999999999999999874433 78
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCC---------CcEEEEecCcCCCccCCHHHHHHHhhccCCCC
Q psy15878 244 YHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLP---------AQRVIIRDSYVGRDFISLNMYKQMVGRAGRTG 314 (693)
Q Consensus 244 ~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp---------~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g 314 (693)
.+||.+...+|..+.++++.| +|+|||+++++|+|+| ++.||+++.. | +.....||+||+||.|
T Consensus 453 ~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~----p-s~rid~qr~GRtGRqG 525 (762)
T TIGR03714 453 LLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERM----E-NSRVDLQLRGRSGRQG 525 (762)
T ss_pred EecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCC----C-CcHHHHHhhhcccCCC
Confidence 899999999999998888777 7999999999999999 8899998763 3 3344499999999999
Q ss_pred CCCCCcEEEEeccc
Q psy15878 315 LQESGESIMLCKTM 328 (693)
Q Consensus 315 ~d~~G~~i~l~~~~ 328 (693)
.+|.++.+++..
T Consensus 526 --~~G~s~~~is~e 537 (762)
T TIGR03714 526 --DPGSSQFFVSLE 537 (762)
T ss_pred --CceeEEEEEccc
Confidence 799999999876
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.80 E-value=6.1e-18 Score=195.73 Aligned_cols=232 Identities=19% Similarity=0.204 Sum_probs=133.4
Q ss_pred CcEEEEcccchHHHHhchhccCCCCcc----cEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCC--HH
Q psy15878 40 KSIYICTIEKGSKLIGSLIQENRIDEI----GLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN--IN 113 (693)
Q Consensus 40 ~~IiV~Tpek~~~Ll~~l~~~~~l~~i----~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n--~~ 113 (693)
++|+|||+.++..-+-.. ....++.+ ++|||||+|.+. ......++.++..+. ....++|+||||+|. .+
T Consensus 411 api~V~TiDQlL~a~l~~-kh~~lR~~~La~svvIiDEVHAyD-~ym~~lL~~~L~~l~--~~g~~vIllSATLP~~~r~ 486 (878)
T PRK09694 411 GQIGVCTIDQVLISVLPV-KHRFIRGFGLGRSVLIVDEVHAYD-AYMYGLLEAVLKAQA--QAGGSVILLSATLPATLKQ 486 (878)
T ss_pred CCEEEcCHHHHHHHHHcc-chHHHHHHhhccCeEEEechhhCC-HHHHHHHHHHHHHHH--hcCCcEEEEeCCCCHHHHH
Confidence 799999998864211110 11122333 589999999873 344556666666554 235679999999985 22
Q ss_pred HHHHhhcCCCccCCCCcccceeeEEe-CceeeeecCC-CCchhhhcccccc--cCCCCC-hhhHHHH---HhcCCceEEE
Q psy15878 114 ALSTFIEGITYVENSRPTKHSEYVTV-DKRVFQSFDG-KSLTEIYADNLDY--SLTGSG-PDAVLHL---VQGNLMVLIF 185 (693)
Q Consensus 114 ~la~~l~~~~~~~~~rpv~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~-~~~l~~l---~~~~~~vLVF 185 (693)
.+.+-++.........+.|+...... ....+..... ......+.+.... ...... ...+..+ +..++++|||
T Consensus 487 ~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf 566 (878)
T PRK09694 487 KLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLI 566 (878)
T ss_pred HHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEE
Confidence 33332222100000011122111100 0000111000 0000000010000 000011 1222222 2378899999
Q ss_pred eCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHH----HHHHHH
Q psy15878 186 CSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERR----LIEEAY 261 (693)
Q Consensus 186 ~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~----~ve~~f 261 (693)
|||++.|+.+++.|.+.... ...+..+||.++..+|. .+++.|
T Consensus 567 ~NTV~~Aq~ly~~L~~~~~~---------------------------------~~~v~llHsrf~~~dR~~~E~~vl~~f 613 (878)
T PRK09694 567 CNLVDDAQKLYQRLKELNNT---------------------------------QVDIDLFHARFTLNDRREKEQRVIENF 613 (878)
T ss_pred ECCHHHHHHHHHHHHhhCCC---------------------------------CceEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999862100 02389999999999994 556677
Q ss_pred -hCCC---CeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCC
Q psy15878 262 -LAGT---LQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGL 315 (693)
Q Consensus 262 -~~g~---i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~ 315 (693)
++|. .+|||||+++++|+|++. +++|.... +...++||+||+||.+.
T Consensus 614 gk~g~r~~~~ILVaTQViE~GLDId~-DvlItdla------PidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 614 GKNGKRNQGRILVATQVVEQSLDLDF-DWLITQLC------PVDLLFQRLGRLHRHHR 664 (878)
T ss_pred HhcCCcCCCeEEEECcchhheeecCC-CeEEECCC------CHHHHHHHHhccCCCCC
Confidence 6676 479999999999999964 67776532 57899999999999985
No 90
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.79 E-value=1.7e-18 Score=193.76 Aligned_cols=107 Identities=21% Similarity=0.157 Sum_probs=97.0
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.|+||||+|...++.++..|.+.++. ...+||+ +.+|+..
T Consensus 404 ~grpvLV~t~si~~se~ls~~L~~~gi~------------------------------------~~~Lna~--q~~rEa~ 445 (745)
T TIGR00963 404 KGQPVLVGTTSVEKSELLSNLLKERGIP------------------------------------HNVLNAK--NHEREAE 445 (745)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHcCCC------------------------------------eEEeeCC--hHHHHHH
Confidence 8999999999999999999999885443 6788998 7899999
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCC-------cEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPA-------QRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~-------~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
+.+|+.+...|+|||+++++|+||+. ..+||.+.. |-|...|.|+.||+||.| .+|.+..+++..
T Consensus 446 ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~----p~s~ri~~q~~GRtGRqG--~~G~s~~~ls~e 517 (745)
T TIGR00963 446 IIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER----HESRRIDNQLRGRSGRQG--DPGSSRFFLSLE 517 (745)
T ss_pred HHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCC----CCcHHHHHHHhccccCCC--CCcceEEEEecc
Confidence 99999999999999999999999999 558998764 789999999999999999 799999998876
No 91
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=3.2e-18 Score=190.54 Aligned_cols=116 Identities=22% Similarity=0.201 Sum_probs=94.8
Q ss_pred hhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEE
Q psy15878 169 PDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAY 244 (693)
Q Consensus 169 ~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~ 244 (693)
...+.+++. .+.++||||+|++.++.++..|.+.++. +..
T Consensus 459 ~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~------------------------------------~~~ 502 (656)
T PRK12898 459 WAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLP------------------------------------HQV 502 (656)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCC------------------------------------EEE
Confidence 344555554 4789999999999999999999885443 888
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCC---CcE-----EEEecCcCCCccCCHHHHHHHhhccCCCCCC
Q psy15878 245 HHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLP---AQR-----VIIRDSYVGRDFISLNMYKQMVGRAGRTGLQ 316 (693)
Q Consensus 245 ~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp---~~~-----vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d 316 (693)
+||.++..++..+. |+.+..+|+|||+++++|+||| .+. +||+++. |.+...|.||+||+||.|
T Consensus 503 Lhg~~~~rE~~ii~--~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~----P~s~r~y~hr~GRTGRqG-- 574 (656)
T PRK12898 503 LNAKQDAEEAAIVA--RAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTER----HDSARIDRQLAGRCGRQG-- 574 (656)
T ss_pred eeCCcHHHHHHHHH--HcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCC----CCCHHHHHHhcccccCCC--
Confidence 99997666555554 4555557999999999999999 565 8999875 779999999999999999
Q ss_pred CCCcEEEEeccc
Q psy15878 317 ESGESIMLCKTM 328 (693)
Q Consensus 317 ~~G~~i~l~~~~ 328 (693)
.+|.++.+++..
T Consensus 575 ~~G~s~~~is~e 586 (656)
T PRK12898 575 DPGSYEAILSLE 586 (656)
T ss_pred CCeEEEEEechh
Confidence 799999999876
No 92
>PRK14701 reverse gyrase; Provisional
Probab=99.79 E-value=1.3e-18 Score=212.15 Aligned_cols=269 Identities=13% Similarity=0.101 Sum_probs=166.9
Q ss_pred ChhhHHHHHHHHhhhhC--cEEEEeeccCCCCCccc---ccc-CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecc
Q psy15878 1 MVHEKYQSLAKAAEEFK--FYLEEYAGVKGQYPPTK---RQL-NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEF 74 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~--~~v~~~~G~~~~~~~~~---~~~-~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~ 74 (693)
||.|+++.++.++..++ +++..++|+.....+.. ... +.++|+|+||+++...+..+. ..+++++|||||
T Consensus 134 La~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~----~~~i~~iVVDEA 209 (1638)
T PRK14701 134 LVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK----HLKFDFIFVDDV 209 (1638)
T ss_pred HHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh----hCCCCEEEEECc
Confidence 68899999999988764 56677888765433221 111 358999999998654443321 167999999999
Q ss_pred cccCCC-----------CChHHHHH----HHH---------------HHh----ccCCCce-EEEEcCcCCCHHHHHHhh
Q psy15878 75 HMLNEP-----------QRGPILEC----VVS---------------KVL----YLKKSIQ-IFAMSATIGNINALSTFI 119 (693)
Q Consensus 75 H~l~d~-----------~rg~~le~----il~---------------~l~----~~~~~~q-ii~lSATl~n~~~la~~l 119 (693)
|++.++ ++.+.+.. ++. ++. ..+...| .+.+|||.+.-.+...++
T Consensus 210 D~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~ 289 (1638)
T PRK14701 210 DAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLY 289 (1638)
T ss_pred eeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHh
Confidence 999763 44444432 221 010 1123445 567999997533444444
Q ss_pred cCCC-ccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHh-cCCceEEEeCChHH---HHH
Q psy15878 120 EGIT-YVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSSKIA---CSN 194 (693)
Q Consensus 120 ~~~~-~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr~~---~e~ 194 (693)
.... |........+.... ..|.. ........+..++. .+.++||||+|++. |+.
T Consensus 290 ~~~l~f~v~~~~~~lr~i~----~~yi~-----------------~~~~~k~~L~~ll~~~g~~gIVF~~t~~~~e~ae~ 348 (1638)
T PRK14701 290 RELLGFEVGSGRSALRNIV----DVYLN-----------------PEKIIKEHVRELLKKLGKGGLIFVPIDEGAEKAEE 348 (1638)
T ss_pred hcCeEEEecCCCCCCCCcE----EEEEE-----------------CCHHHHHHHHHHHHhCCCCeEEEEeccccchHHHH
Confidence 2211 11000000000000 00000 00011134556665 56789999999886 588
Q ss_pred HHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEec--
Q psy15878 195 LALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCT-- 272 (693)
Q Consensus 195 la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT-- 272 (693)
++..|...++. +..+||+ |..+++.|++|+++|||||
T Consensus 349 la~~L~~~Gi~------------------------------------a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s 387 (1638)
T PRK14701 349 IEKYLLEDGFK------------------------------------IELVSAK-----NKKGFDLFEEGEIDYLIGVAT 387 (1638)
T ss_pred HHHHHHHCCCe------------------------------------EEEecch-----HHHHHHHHHcCCCCEEEEecC
Confidence 89988874433 7889985 8899999999999999999
Q ss_pred --chhhcccCCCC-cEEEEecCcCCCccCCHHH-------------HHHHhhccCCCCCCCCCcEEEEecccccHHHHHH
Q psy15878 273 --STLAAGVNLPA-QRVIIRDSYVGRDFISLNM-------------YKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSS 336 (693)
Q Consensus 273 --~~l~~Gvnlp~-~~vVI~~~~~g~~~~s~~~-------------~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~ 336 (693)
+++++|||+|+ +++||+++.+... ++... ..++.|||||.| .+++++...... +...+.+
T Consensus 388 ~~gvaaRGIDiP~~Vryvi~~~~Pk~~-~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~-~~~~~~~ 463 (1638)
T PRK14701 388 YYGTLVRGLDLPERIRFAVFYGVPKFR-FRVDLEDPTIYRILGLLSEILKIEEELKEG--IPIEGVLDVFPE-DVEFLRS 463 (1638)
T ss_pred CCCeeEecCccCCccCEEEEeCCCCCC-cchhhcccchhhhhcchHHHHHhhhhcccC--CcchhHHHhHHH-HHHHHHH
Confidence 48999999999 9999998764311 23332 355679999999 466665433333 4444444
Q ss_pred HHh
Q psy15878 337 MMN 339 (693)
Q Consensus 337 ~l~ 339 (693)
++.
T Consensus 464 ~l~ 466 (1638)
T PRK14701 464 ILK 466 (1638)
T ss_pred Hhc
Confidence 443
No 93
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.78 E-value=2.8e-17 Score=191.43 Aligned_cols=141 Identities=14% Similarity=0.189 Sum_probs=109.6
Q ss_pred hhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhh-ccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEE
Q psy15878 169 PDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQF-DRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYH 245 (693)
Q Consensus 169 ~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~ 245 (693)
.+.+.+++. .+.++||||+++..+..+++.|.. .+ ..+..+
T Consensus 481 i~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~G------------------------------------i~~~~i 524 (956)
T PRK04914 481 VEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREG------------------------------------IRAAVF 524 (956)
T ss_pred HHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccC------------------------------------eeEEEE
Confidence 344555555 578999999999999999999954 12 227889
Q ss_pred cCCCCHHHHHHHHHHHhC--CCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEE
Q psy15878 246 HADLTAGERRLIEEAYLA--GTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIM 323 (693)
Q Consensus 246 h~~l~~~eR~~ve~~f~~--g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~ 323 (693)
||+|+..+|..+.+.|++ |..+|||||+++++|+|++.+++||+++. |.++..|.||+||+||.|....-.+++
T Consensus 525 hG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDl----P~nP~~~eQRIGR~~RiGQ~~~V~i~~ 600 (956)
T PRK04914 525 HEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDL----PFNPDLLEQRIGRLDRIGQKHDIQIHV 600 (956)
T ss_pred ECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecC----CCCHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999997 46999999999999999999999999986 889999999999999999543333444
Q ss_pred EecccccHHHHHHHHhCCCCcccccC
Q psy15878 324 LCKTMQDFLRFSSMMNAGPEPISSHM 349 (693)
Q Consensus 324 l~~~~~~~~~~~~~l~~~~~~i~s~l 349 (693)
++......+.+.+++...+.-.+...
T Consensus 601 ~~~~~t~~e~i~~~~~~~l~ife~~~ 626 (956)
T PRK04914 601 PYLEGTAQERLFRWYHEGLNAFEHTC 626 (956)
T ss_pred ccCCCCHHHHHHHHHhhhcCceeccC
Confidence 44444234455666666554444443
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=9e-18 Score=186.21 Aligned_cols=285 Identities=15% Similarity=0.110 Sum_probs=161.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCcccccc----CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQL----NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
|+.|.++.|++. ++.++..++|+.+.......|. +.++|+|+|+..+ . ..++++++|||||.|.
T Consensus 37 L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal---f------~p~~~l~lIIVDEeh~ 104 (505)
T TIGR00595 37 LTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL---F------LPFKNLGLIIVDEEHD 104 (505)
T ss_pred HHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH---c------CcccCCCEEEEECCCc
Confidence 567777777765 4678889998876544333332 4689999998742 1 2468899999999997
Q ss_pred cCCCC-ChHHHHH-HHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCC--ccCCC----CcccceeeEEeCceeeeecC
Q psy15878 77 LNEPQ-RGPILEC-VVSKVLYLKKSIQIFAMSATIGNINALSTFIEGIT--YVENS----RPTKHSEYVTVDKRVFQSFD 148 (693)
Q Consensus 77 l~d~~-rg~~le~-il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~--~~~~~----rpv~l~~~~~~~~~~~~~~~ 148 (693)
.+-.. .++.+.. -+..++....+.++|++|||+ ..+.+........ ..... ++.|..+.+. ..
T Consensus 105 ~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATP-sles~~~~~~g~~~~~~l~~r~~~~~~p~v~vid-------~~- 175 (505)
T TIGR00595 105 SSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATP-SLESYHNAKQKAYRLLVLTRRVSGRKPPEVKLID-------MR- 175 (505)
T ss_pred cccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCC-CHHHHHHHhcCCeEEeechhhhcCCCCCeEEEEe-------cc-
Confidence 76322 2222211 011122224578999999995 5565554432221 00111 1111111111 00
Q ss_pred CCCchhhhcccccccCCCCChhhHHHHHhcCCceEEEeCChHHH-----HHHHHHhhhc------------cCC------
Q psy15878 149 GKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIAC-----SNLALRLQFD------------RFP------ 205 (693)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~-----e~la~~L~~~------------~~~------ 205 (693)
..... ..+ .....+.+.+.+..++++|||+|++..+ ..+-..+.-. +.+
T Consensus 176 -~~~~~-~~l------s~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg 247 (505)
T TIGR00595 176 -KEPRQ-SFL------SPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCG 247 (505)
T ss_pred -ccccc-CCc------cHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCc
Confidence 00000 000 0011223334444889999999998752 2111111100 000
Q ss_pred -----C---C----cccc--hhhHHHHHHHHHhccCCccchHHHHHHh-hceEEEcCCCCHHHH--HHHHHHHhCCCCeE
Q psy15878 206 -----G---T----KEYK--KQEKEDLIEALKEENDGKLSTNLEECIL-YGVAYHHADLTAGER--RLIEEAYLAGTLQI 268 (693)
Q Consensus 206 -----~---~----~~~~--~~~~~~~~~~l~~~~~~~~~~~L~~~~~-~gv~~~h~~l~~~eR--~~ve~~f~~g~i~V 268 (693)
+ | ..+. -...+.+.+++.. .++ ..|...|++++...+ +.+++.|++|+.+|
T Consensus 248 ~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~------------~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~I 315 (505)
T TIGR00595 248 YQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAK------------LFPGARIARIDSDTTSRKGAHEALLNQFANGKADI 315 (505)
T ss_pred CcCCCCCCCCCCCCCeeEeecccHHHHHHHHHh------------hCCCCcEEEEecccccCccHHHHHHHHHhcCCCCE
Confidence 0 0 0000 0011222222222 221 458999999987766 89999999999999
Q ss_pred EEecchhhcccCCCCcEEEE--ecCcCCCcc------CCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 269 ICCTSTLAAGVNLPAQRVII--RDSYVGRDF------ISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 269 LvaT~~l~~Gvnlp~~~vVI--~~~~~g~~~------~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
||+|+.++.|+|+|++++|+ +.+..-..| .....|.|++|||||.+ ..|++++.+...
T Consensus 316 LVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~--~~g~viiqt~~p 381 (505)
T TIGR00595 316 LIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE--DPGQVIIQTYNP 381 (505)
T ss_pred EEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCC--CCCEEEEEeCCC
Confidence 99999999999999998764 333200001 23567999999999988 689998877555
No 95
>PRK09401 reverse gyrase; Reviewed
Probab=99.77 E-value=4.8e-18 Score=203.23 Aligned_cols=242 Identities=16% Similarity=0.101 Sum_probs=156.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCC-CCccc----ccc-CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQ-YPPTK----RQL-NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEF 74 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~-~~~~~----~~~-~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~ 74 (693)
||.|.++.++.++...++.+..+.|+.+. ..+.. ... +.++|+|+||+++...++. -...+++++|||||
T Consensus 135 La~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEa 210 (1176)
T PRK09401 135 LVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDV 210 (1176)
T ss_pred HHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEECh
Confidence 68999999999999999888887765432 11111 111 4689999999996544431 22356999999999
Q ss_pred cccCCCCCh------------HHHHHHHHHHhc-------------c--------CCCceEEEEcCcCCC--HHH--HHH
Q psy15878 75 HMLNEPQRG------------PILECVVSKVLY-------------L--------KKSIQIFAMSATIGN--INA--LST 117 (693)
Q Consensus 75 H~l~d~~rg------------~~le~il~~l~~-------------~--------~~~~qii~lSATl~n--~~~--la~ 117 (693)
|.+.++++. ..++.++..++. + ....|++++|||.+. ... +.+
T Consensus 211 D~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ 290 (1176)
T PRK09401 211 DAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRE 290 (1176)
T ss_pred HHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhc
Confidence 998864322 344444444321 0 116799999999963 111 112
Q ss_pred hhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHh-cCCceEEEeCChHH---HH
Q psy15878 118 FIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSSKIA---CS 193 (693)
Q Consensus 118 ~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr~~---~e 193 (693)
.++ |.. .++... .+.+...|.....+.+.+..++. -+.++||||++++. |+
T Consensus 291 ll~---~~v-~~~~~~---------------------~rnI~~~yi~~~~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae 345 (1176)
T PRK09401 291 LLG---FEV-GSPVFY---------------------LRNIVDSYIVDEDSVEKLVELVKRLGDGGLIFVPSDKGKEYAE 345 (1176)
T ss_pred cce---EEe-cCcccc---------------------cCCceEEEEEcccHHHHHHHHHHhcCCCEEEEEecccChHHHH
Confidence 211 100 000000 00000000001123345666665 45789999999877 99
Q ss_pred HHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEe--
Q psy15878 194 NLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICC-- 271 (693)
Q Consensus 194 ~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLva-- 271 (693)
.+++.|...++. +..+||+| + + .++.|++|+++||||
T Consensus 346 ~l~~~L~~~gi~------------------------------------v~~~hg~l---~-~-~l~~F~~G~~~VLVata 384 (1176)
T PRK09401 346 ELAEYLEDLGIN------------------------------------AELAISGF---E-R-KFEKFEEGEVDVLVGVA 384 (1176)
T ss_pred HHHHHHHHCCCc------------------------------------EEEEeCcH---H-H-HHHHHHCCCCCEEEEec
Confidence 999999874443 88999999 2 2 349999999999999
Q ss_pred --cchhhcccCCCC-cEEEEecCcCCCc-cC-CHHHHHHHhhccCC
Q psy15878 272 --TSTLAAGVNLPA-QRVIIRDSYVGRD-FI-SLNMYKQMVGRAGR 312 (693)
Q Consensus 272 --T~~l~~Gvnlp~-~~vVI~~~~~g~~-~~-s~~~~~Qr~GRaGR 312 (693)
|+++++|+|+|+ +++||+++.+... .+ .-..+.+|+||.-.
T Consensus 385 s~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 385 SYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 689999999999 8999998753211 11 23568999999853
No 96
>KOG0349|consensus
Probab=99.77 E-value=1.2e-18 Score=176.83 Aligned_cols=278 Identities=17% Similarity=0.194 Sum_probs=174.8
Q ss_pred hhhHHHHHHHH---hhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccC
Q psy15878 2 VHEKYQSLAKA---AEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLN 78 (693)
Q Consensus 2 ~~e~~~~l~~~---~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~ 78 (693)
+.|.+..+++| .....++--.+.||.-...+......+.+|+|+||+++..++++ ..-.+..+.++|+||++.+.
T Consensus 299 aEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--g~~~lt~crFlvlDead~lL 376 (725)
T KOG0349|consen 299 AEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--GLVTLTHCRFLVLDEADLLL 376 (725)
T ss_pred HHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--cceeeeeeEEEEecchhhhh
Confidence 44555544444 33233343345566544445555557899999999998766655 22356889999999999887
Q ss_pred CCCChHHHHHHHHHHhcc---CCCceEEEEcCcCCC--HHHHH-------HhhcCCCccCCCCcccceeeEEeCceeeee
Q psy15878 79 EPQRGPILECVVSKVLYL---KKSIQIFAMSATIGN--INALS-------TFIEGITYVENSRPTKHSEYVTVDKRVFQS 146 (693)
Q Consensus 79 d~~rg~~le~il~~l~~~---~~~~qii~lSATl~n--~~~la-------~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~ 146 (693)
...+...+..+-..+... ...+|.+..|||+.- ...++ .|.+-+ ..+.-|-.....+.. +
T Consensus 377 ~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLk--geD~vpetvHhvv~l------v 448 (725)
T KOG0349|consen 377 GQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLK--GEDLVPETVHHVVKL------V 448 (725)
T ss_pred hcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecc--cccccchhhccceee------c
Confidence 544443333333333222 235899999999863 33333 233211 011111111100000 0
Q ss_pred cC--CCCchhhh-cccc------cc----cCCCCChhhHHHHHh-----------cCCceEEEeCChHHHHHHHHHhhhc
Q psy15878 147 FD--GKSLTEIY-ADNL------DY----SLTGSGPDAVLHLVQ-----------GNLMVLIFCSSKIACSNLALRLQFD 202 (693)
Q Consensus 147 ~~--~~~~~~~~-~~~~------~~----~~~~~~~~~l~~l~~-----------~~~~vLVF~~sr~~~e~la~~L~~~ 202 (693)
.+ +..+...+ .+.. .+ ......+..-..+++ ...++||||.|+.+|..+-+.+.++
T Consensus 449 ~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qk 528 (725)
T KOG0349|consen 449 CPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQK 528 (725)
T ss_pred CCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHc
Confidence 00 00000000 0000 00 001111112222222 6679999999999999999999874
Q ss_pred cCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCC
Q psy15878 203 RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLP 282 (693)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp 282 (693)
+.. .+.+.++|++..+.||+.-++.|+.+.++.||||+++++|+||-
T Consensus 529 gg~---------------------------------~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~ 575 (725)
T KOG0349|consen 529 GGK---------------------------------HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDIT 575 (725)
T ss_pred CCc---------------------------------cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhcccccc
Confidence 321 13488999999999999999999999999999999999999999
Q ss_pred CcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 283 AQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 283 ~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
..-++|+-.. |-....|.||+||+||.. +-|.++-++...
T Consensus 576 g~p~~invtl----pd~k~nyvhrigrvgrae--rmglaislvat~ 615 (725)
T KOG0349|consen 576 GLPFMINVTL----PDDKTNYVHRIGRVGRAE--RMGLAISLVATV 615 (725)
T ss_pred CCceEEEEec----Ccccchhhhhhhccchhh--hcceeEEEeecc
Confidence 9999999765 668899999999999998 689999887655
No 97
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.5e-16 Score=158.00 Aligned_cols=249 Identities=19% Similarity=0.228 Sum_probs=162.7
Q ss_pred hhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCC
Q psy15878 2 VHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQ 81 (693)
Q Consensus 2 ~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~ 81 (693)
+.|.+..|+.-+. +..+..++|+..++ -.++++|||...+ ++ .-+.++++||||++-..= .
T Consensus 157 clEl~~Rlk~aF~--~~~I~~Lyg~S~~~-------fr~plvVaTtHQL---lr------Fk~aFD~liIDEVDAFP~-~ 217 (441)
T COG4098 157 CLELYPRLKQAFS--NCDIDLLYGDSDSY-------FRAPLVVATTHQL---LR------FKQAFDLLIIDEVDAFPF-S 217 (441)
T ss_pred hHHHHHHHHHhhc--cCCeeeEecCCchh-------ccccEEEEehHHH---HH------HHhhccEEEEeccccccc-c
Confidence 3466666666543 45667788864432 2378999998763 22 125689999999996642 2
Q ss_pred ChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHh-hcCCC------ccCCCCcccceeeEEeCceeeeecCCCCchh
Q psy15878 82 RGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTF-IEGIT------YVENSRPTKHSEYVTVDKRVFQSFDGKSLTE 154 (693)
Q Consensus 82 rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~-l~~~~------~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 154 (693)
-.+.+...+.+.+ ...--.|.||||.++ ++.+- ...+. -....+|.|+..++..+.-
T Consensus 218 ~d~~L~~Av~~ar--k~~g~~IylTATp~k--~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~------------ 281 (441)
T COG4098 218 DDQSLQYAVKKAR--KKEGATIYLTATPTK--KLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNW------------ 281 (441)
T ss_pred CCHHHHHHHHHhh--cccCceEEEecCChH--HHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccH------------
Confidence 3355666666554 344568999999875 22221 11111 0112234444433332110
Q ss_pred hhcccccccCCCCChhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCcc
Q psy15878 155 IYADNLDYSLTGSGPDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKL 230 (693)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 230 (693)
.+.+. ...-+..+...+. .+.+++||+|+....+.++..|.+ .+ +.
T Consensus 282 ~k~l~-----r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~--~~-~~---------------------- 331 (441)
T COG4098 282 NKKLQ-----RNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKK--KL-PK---------------------- 331 (441)
T ss_pred HHHhh-----hccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHh--hC-Cc----------------------
Confidence 00000 1112233444444 789999999999999999999966 22 00
Q ss_pred chHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhcc
Q psy15878 231 STNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRA 310 (693)
Q Consensus 231 ~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRa 310 (693)
..+++.|+. ...|.+..++||+|++++|++|++|++||++|.++|.+...- ..-.+.+..+|++||+
T Consensus 332 ---------~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgae--h~vfTesaLVQIaGRv 398 (441)
T COG4098 332 ---------ETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAE--HRVFTESALVQIAGRV 398 (441)
T ss_pred ---------cceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCC--cccccHHHHHHHhhhc
Confidence 126788875 467899999999999999999999999999999999876531 0136889999999999
Q ss_pred CCCCCCCCCcEEEEeccc
Q psy15878 311 GRTGLQESGESIMLCKTM 328 (693)
Q Consensus 311 GR~g~d~~G~~i~l~~~~ 328 (693)
||.-..+.|.++.|-...
T Consensus 399 GRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 399 GRSLERPTGDVLFFHYGK 416 (441)
T ss_pred cCCCcCCCCcEEEEeccc
Confidence 998766779887775544
No 98
>KOG0329|consensus
Probab=99.74 E-value=4.3e-18 Score=161.96 Aligned_cols=226 Identities=16% Similarity=0.181 Sum_probs=152.8
Q ss_pred ChhhHHHHHHHHhhhh-CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEF-KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
||.|+.++..+|.+.+ +.+|..+.||...........+-++|+|+||+++..|++. ..-.++++..+|+||++.+.+
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~--k~l~lk~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN--RSLNLKNVKHFVLDECDKMLE 199 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh--ccCchhhcceeehhhHHHHHH
Confidence 5677777888887765 6799999999876665555556899999999999988886 456789999999999996653
Q ss_pred CC-ChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH-hhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhh
Q psy15878 80 PQ-RGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST-FIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIY 156 (693)
Q Consensus 80 ~~-rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~-~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 156 (693)
.- .....+.+ .+..+...|+..+|||+++ ..-+.. |+.. |++.++. ....+....
T Consensus 200 ~lDMrRDvQEi---fr~tp~~KQvmmfsatlskeiRpvC~kFmQd----------PmEi~vD---------dE~KLtLHG 257 (387)
T KOG0329|consen 200 QLDMRRDVQEI---FRMTPHEKQVMMFSATLSKEIRPVCHKFMQD----------PMEIFVD---------DEAKLTLHG 257 (387)
T ss_pred HHHHHHHHHHH---hhcCcccceeeeeeeecchhhHHHHHhhhcC----------chhhhcc---------chhhhhhhh
Confidence 21 22222222 2334667899999999985 333332 2221 2221111 000111000
Q ss_pred cccccccC--CCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccch
Q psy15878 157 ADNLDYSL--TGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLST 232 (693)
Q Consensus 157 ~~~~~~~~--~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 232 (693)
... .|.+ ...+...+.+++. +-.+++||+.|....
T Consensus 258 LqQ-~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl---------------------------------------- 296 (387)
T KOG0329|consen 258 LQQ-YYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRL---------------------------------------- 296 (387)
T ss_pred HHH-HHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhh----------------------------------------
Confidence 000 0100 2233445556665 778899998664320
Q ss_pred HHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCC
Q psy15878 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGR 312 (693)
Q Consensus 233 ~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR 312 (693)
+ | ..+ +|||+.+.+|+|+..++.|++++. |-+..+|+||+|||||
T Consensus 297 -----------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdm----p~~~DtYlHrv~rAgr 341 (387)
T KOG0329|consen 297 -----------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDM----PEDSDTYLHRVARAGR 341 (387)
T ss_pred -----------------h----------h---hhh-hHHhhhhccccCcccceeeeccCC----CCCchHHHHHhhhhhc
Confidence 0 2 123 899999999999999999999986 7789999999999999
Q ss_pred CCCCCCCcEEEEeccc
Q psy15878 313 TGLQESGESIMLCKTM 328 (693)
Q Consensus 313 ~g~d~~G~~i~l~~~~ 328 (693)
.| ..|.++.+....
T Consensus 342 fG--tkglaitfvs~e 355 (387)
T KOG0329|consen 342 FG--TKGLAITFVSDE 355 (387)
T ss_pred cc--cccceeehhcch
Confidence 99 789999998876
No 99
>KOG0353|consensus
Probab=99.74 E-value=2.4e-17 Score=164.78 Aligned_cols=236 Identities=23% Similarity=0.301 Sum_probs=173.0
Q ss_pred CCCcEEEEcccchHH---HHhchhccCCCCcccEEEEecccccCCCC--ChHHHHHHHHHHhccCCCceEEEEcCcCCC-
Q psy15878 38 NKKSIYICTIEKGSK---LIGSLIQENRIDEIGLIVIDEFHMLNEPQ--RGPILECVVSKVLYLKKSIQIFAMSATIGN- 111 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~---Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~--rg~~le~il~~l~~~~~~~qii~lSATl~n- 111 (693)
....++..|||++.. +++++-..-....+.++-+||+|+.+.|+ +.+.+.. +.-+++.-++..++|++||..|
T Consensus 185 se~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~-l~ilkrqf~~~~iigltatatn~ 263 (695)
T KOG0353|consen 185 SEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKA-LGILKRQFKGAPIIGLTATATNH 263 (695)
T ss_pred ceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHH-HHHHHHhCCCCceeeeehhhhcc
Confidence 456899999999752 34444333344678899999999998765 6666644 3445555678899999999876
Q ss_pred -HHHHHHhhcCC---CccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHh---cCCceEE
Q psy15878 112 -INALSTFIEGI---TYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ---GNLMVLI 184 (693)
Q Consensus 112 -~~~la~~l~~~---~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~vLV 184 (693)
.++..+.|+.. .|...+..-.+...+. . .++ +.....+.+.+++. .+..-||
T Consensus 264 vl~d~k~il~ie~~~tf~a~fnr~nl~yev~------q-kp~--------------n~dd~~edi~k~i~~~f~gqsgii 322 (695)
T KOG0353|consen 264 VLDDAKDILCIEAAFTFRAGFNRPNLKYEVR------Q-KPG--------------NEDDCIEDIAKLIKGDFAGQSGII 322 (695)
T ss_pred hhhHHHHHHhHHhhheeecccCCCCceeEee------e-CCC--------------ChHHHHHHHHHHhccccCCCcceE
Confidence 56666666543 3444443322321110 0 010 01122344566666 7889999
Q ss_pred EeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCC
Q psy15878 185 FCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAG 264 (693)
Q Consensus 185 F~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g 264 (693)
||-|+++|+.++..|...|+. ...+|+.|.+++|.-+-+.+-.|
T Consensus 323 yc~sq~d~ekva~alkn~gi~------------------------------------a~~yha~lep~dks~~hq~w~a~ 366 (695)
T KOG0353|consen 323 YCFSQKDCEKVAKALKNHGIH------------------------------------AGAYHANLEPEDKSGAHQGWIAG 366 (695)
T ss_pred EEeccccHHHHHHHHHhcCcc------------------------------------ccccccccCcccccccccccccc
Confidence 999999999999999885544 67799999999999999999999
Q ss_pred CCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHH---------------------------------------
Q psy15878 265 TLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQ--------------------------------------- 305 (693)
Q Consensus 265 ~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Q--------------------------------------- 305 (693)
++.|+|||-.+.+|||-|++++||+... |-|...|.|
T Consensus 367 eiqvivatvafgmgidkpdvrfvihhsl----~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffav 442 (695)
T KOG0353|consen 367 EIQVIVATVAFGMGIDKPDVRFVIHHSL----PKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAV 442 (695)
T ss_pred ceEEEEEEeeecccCCCCCeeEEEeccc----chhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeee
Confidence 9999999999999999999999999875 678889999
Q ss_pred ----HhhccCCCCCCCCCcEEEEecccccHHHHHHHH
Q psy15878 306 ----MVGRAGRTGLQESGESIMLCKTMQDFLRFSSMM 338 (693)
Q Consensus 306 ----r~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l 338 (693)
-.|||||.+ .+..|++++.-. +......++
T Consensus 443 fsekesgragrd~--~~a~cilyy~~~-difk~ssmv 476 (695)
T KOG0353|consen 443 FSEKESGRAGRDD--MKADCILYYGFA-DIFKISSMV 476 (695)
T ss_pred ecchhccccccCC--CcccEEEEechH-HHHhHHHHH
Confidence 789999998 588999988766 554444443
No 100
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.72 E-value=2.5e-16 Score=180.95 Aligned_cols=294 Identities=17% Similarity=0.152 Sum_probs=164.2
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccc----cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQ----LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~----~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
|+.|.++.|++. +|.++..++|+.+..+....| .+.++|+|+|+..+ . ..++++++|||||+|.
T Consensus 202 L~~Q~~~~l~~~---fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal---~------~p~~~l~liVvDEeh~ 269 (679)
T PRK05580 202 LTPQMLARFRAR---FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL---F------LPFKNLGLIIVDEEHD 269 (679)
T ss_pred HHHHHHHHHHHH---hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh---c------ccccCCCEEEEECCCc
Confidence 567888777764 467899999987654433333 25689999999753 1 3468899999999997
Q ss_pred cCCCC-ChHHH--HHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCC--CccCCCCc----ccceeeEEeCceeeeec
Q psy15878 77 LNEPQ-RGPIL--ECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI--TYVENSRP----TKHSEYVTVDKRVFQSF 147 (693)
Q Consensus 77 l~d~~-rg~~l--e~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~--~~~~~~rp----v~l~~~~~~~~~~~~~~ 147 (693)
.+-.. .++.+ ..+ ..++....+.++|++|||++ .+.+....... .+.-..|+ .|..+.+..
T Consensus 270 ~s~~~~~~p~y~~r~v-a~~ra~~~~~~~il~SATps-~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~-------- 339 (679)
T PRK05580 270 SSYKQQEGPRYHARDL-AVVRAKLENIPVVLGSATPS-LESLANAQQGRYRLLRLTKRAGGARLPEVEIIDM-------- 339 (679)
T ss_pred cccccCcCCCCcHHHH-HHHHhhccCCCEEEEcCCCC-HHHHHHHhccceeEEEeccccccCCCCeEEEEec--------
Confidence 65322 22222 121 22222346789999999964 44443322111 11111111 111111110
Q ss_pred CCCCchhhhcccccccCCCCChhhHHHHHhcCCceEEEeCChHHH-----HHHHHHhhh------------ccCC-----
Q psy15878 148 DGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIAC-----SNLALRLQF------------DRFP----- 205 (693)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~-----e~la~~L~~------------~~~~----- 205 (693)
..... ..+.. .-.....+.+.+.+..+.++|||+|++..+ ..+-..+.. .+.+
T Consensus 340 -~~~~~---~~~~~-~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~C 414 (679)
T PRK05580 340 -RELLR---GENGS-FLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHC 414 (679)
T ss_pred -hhhhh---hcccC-CCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCC
Confidence 00000 00000 000011122333344788999999987543 222111100 0000
Q ss_pred ------C---C----ccc--chhhHHHHHHHHHhccCCccchHHHHHHh-hceEEEcCCCC--HHHHHHHHHHHhCCCCe
Q psy15878 206 ------G---T----KEY--KKQEKEDLIEALKEENDGKLSTNLEECIL-YGVAYHHADLT--AGERRLIEEAYLAGTLQ 267 (693)
Q Consensus 206 ------~---~----~~~--~~~~~~~~~~~l~~~~~~~~~~~L~~~~~-~gv~~~h~~l~--~~eR~~ve~~f~~g~i~ 267 (693)
+ | ..+ .-...+.+.+++.. .++ ..|...|++++ ..+++.+++.|++|+.+
T Consensus 415 g~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~------------~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ 482 (679)
T PRK05580 415 GYQEPIPKACPECGSTDLVPVGPGTERLEEELAE------------LFPEARILRIDRDTTRRKGALEQLLAQFARGEAD 482 (679)
T ss_pred cCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHH------------hCCCCcEEEEeccccccchhHHHHHHHHhcCCCC
Confidence 0 0 000 00111222222322 221 35889999986 46799999999999999
Q ss_pred EEEecchhhcccCCCCcEEEEecCcCC--Ccc------CCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHH
Q psy15878 268 IICCTSTLAAGVNLPAQRVIIRDSYVG--RDF------ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSS 336 (693)
Q Consensus 268 VLvaT~~l~~Gvnlp~~~vVI~~~~~g--~~~------~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~ 336 (693)
|||+|+.++.|+|+|++++|+..+.+. ..| .....|.|++|||||.+ ..|++++.+... +...+..
T Consensus 483 ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~--~~g~viiqT~~p-~~~~~~~ 556 (679)
T PRK05580 483 ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAE--KPGEVLIQTYHP-EHPVIQA 556 (679)
T ss_pred EEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCC--CCCEEEEEeCCC-CCHHHHH
Confidence 999999999999999999775432211 001 13567999999999987 689999887666 4333333
No 101
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.70 E-value=2.2e-16 Score=189.36 Aligned_cols=224 Identities=16% Similarity=0.105 Sum_probs=139.6
Q ss_pred ChhhHHHHHHHHhhhhCcEEE---EeeccCCCCCccc---ccc-CCCcEEEEcccchHHHHhchhccCCCCcccEEEEec
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLE---EYAGVKGQYPPTK---RQL-NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDE 73 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~---~~~G~~~~~~~~~---~~~-~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE 73 (693)
||.|.++.++.++...++.+. .++|+.+...+.. ... +.++|+|+||+++...+..+ . .+++++|+||
T Consensus 133 La~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---~--~~~~~iVvDE 207 (1171)
T TIGR01054 133 LVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---G--PKFDFIFVDD 207 (1171)
T ss_pred HHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh---c--CCCCEEEEeC
Confidence 688999999999988877643 4677764322211 111 35999999999865444332 1 2899999999
Q ss_pred ccccCCCC-----------ChH-HHHHHHHHH-------------------hccCCCce--EEEEcCcC-CCHHHHH-Hh
Q psy15878 74 FHMLNEPQ-----------RGP-ILECVVSKV-------------------LYLKKSIQ--IFAMSATI-GNINALS-TF 118 (693)
Q Consensus 74 ~H~l~d~~-----------rg~-~le~il~~l-------------------~~~~~~~q--ii~lSATl-~n~~~la-~~ 118 (693)
||.+.+.. +.. .++.++..+ ...+...| ++.+|||. +. .+. .+
T Consensus 208 aD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~--~~~~~l 285 (1171)
T TIGR01054 208 VDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPR--GKRAKL 285 (1171)
T ss_pred hHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCcc--ccHHHH
Confidence 99998743 222 234332211 11223334 67789994 42 111 11
Q ss_pred hcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHh-cCCceEEEeCCh---HHHHH
Q psy15878 119 IEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSSK---IACSN 194 (693)
Q Consensus 119 l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr---~~~e~ 194 (693)
+.. ... +.++... ...+.+...|.......+.+.+++. -+.++||||+|+ +.|+.
T Consensus 286 ~r~-ll~-----------~~v~~~~---------~~~r~I~~~~~~~~~~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~ 344 (1171)
T TIGR01054 286 FRE-LLG-----------FEVGGGS---------DTLRNVVDVYVEDEDLKETLLEIVKKLGTGGIVYVSIDYGKEKAEE 344 (1171)
T ss_pred ccc-ccc-----------eEecCcc---------ccccceEEEEEecccHHHHHHHHHHHcCCCEEEEEeccccHHHHHH
Confidence 111 000 0000000 0000000000001111334556665 567899999999 99999
Q ss_pred HHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEec--
Q psy15878 195 LALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCT-- 272 (693)
Q Consensus 195 la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT-- 272 (693)
++..|.+.++ .+..+||+++ +.+++.|++|+++|||||
T Consensus 345 l~~~L~~~g~------------------------------------~a~~lhg~~~----~~~l~~Fr~G~~~vLVata~ 384 (1171)
T TIGR01054 345 IAEFLENHGV------------------------------------KAVAYHATKP----KEDYEKFAEGEIDVLIGVAS 384 (1171)
T ss_pred HHHHHHhCCc------------------------------------eEEEEeCCCC----HHHHHHHHcCCCCEEEEecc
Confidence 9999987433 3889999997 368899999999999994
Q ss_pred --chhhcccCCCC-cEEEEecCc
Q psy15878 273 --STLAAGVNLPA-QRVIIRDSY 292 (693)
Q Consensus 273 --~~l~~Gvnlp~-~~vVI~~~~ 292 (693)
+++++|+|+|+ +++||+++.
T Consensus 385 ~tdv~aRGIDip~~V~~vI~~~~ 407 (1171)
T TIGR01054 385 YYGTLVRGLDLPERVRYAVFLGV 407 (1171)
T ss_pred ccCcccccCCCCccccEEEEECC
Confidence 89999999999 899999653
No 102
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.65 E-value=2e-15 Score=171.44 Aligned_cols=111 Identities=24% Similarity=0.280 Sum_probs=98.6
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||||+|++.++.+++.|.+.+.. +.++||+++..+|..+
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~------------------------------------~~~lh~~~~~~eR~~~ 484 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIK------------------------------------VRYLHSEIDTLERVEI 484 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccc------------------------------------eeeeeCCCCHHHHHHH
Confidence 7889999999999999999999874332 8889999999999999
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCCcEEEEecCc--CCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY--VGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~--~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
++.|+.|.+.|+|||+.+++|+|+|.+.+||..+. .| .|.+..+|+||+|||||.. .|.++++++..
T Consensus 485 l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG-~p~~~~~~iqriGRagR~~---~G~vi~~~~~~ 553 (655)
T TIGR00631 485 IRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEG-FLRSERSLIQTIGRAARNV---NGKVIMYADKI 553 (655)
T ss_pred HHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCccccc-CCCCHHHHHHHhcCCCCCC---CCEEEEEEcCC
Confidence 99999999999999999999999999998887652 22 2668899999999999986 89999998865
No 103
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=2.3e-15 Score=170.26 Aligned_cols=116 Identities=22% Similarity=0.249 Sum_probs=100.7
Q ss_pred hhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEE
Q psy15878 169 PDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAY 244 (693)
Q Consensus 169 ~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~ 244 (693)
.+.+.+.+. .+.|+||||+|+..++.++..|.+.+.. ...
T Consensus 426 ~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~------------------------------------~~~ 469 (796)
T PRK12906 426 FNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIP------------------------------------HAV 469 (796)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCC------------------------------------eeE
Confidence 344555553 8899999999999999999999885443 778
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCC---CcE-----EEEecCcCCCccCCHHHHHHHhhccCCCCCC
Q psy15878 245 HHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLP---AQR-----VIIRDSYVGRDFISLNMYKQMVGRAGRTGLQ 316 (693)
Q Consensus 245 ~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp---~~~-----vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d 316 (693)
+||++...++..+.++++.|. |+|||+.+++|.||+ ++. +||.+.. |-|...|.|+.||+||.|
T Consensus 470 Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~----pes~ri~~Ql~GRtGRqG-- 541 (796)
T PRK12906 470 LNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTER----HESRRIDNQLRGRSGRQG-- 541 (796)
T ss_pred ecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeec----CCcHHHHHHHhhhhccCC--
Confidence 999999999999999988886 999999999999995 778 9998764 789999999999999999
Q ss_pred CCCcEEEEeccc
Q psy15878 317 ESGESIMLCKTM 328 (693)
Q Consensus 317 ~~G~~i~l~~~~ 328 (693)
.+|.+..+++-.
T Consensus 542 ~~G~s~~~~sle 553 (796)
T PRK12906 542 DPGSSRFYLSLE 553 (796)
T ss_pred CCcceEEEEecc
Confidence 799999998776
No 104
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.61 E-value=1.6e-14 Score=158.32 Aligned_cols=244 Identities=19% Similarity=0.170 Sum_probs=146.2
Q ss_pred HHHhhhhCc--EEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhc-hhccCCCCcccEEEEecccccCCCCChHHH
Q psy15878 10 AKAAEEFKF--YLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGS-LIQENRIDEIGLIVIDEFHMLNEPQRGPIL 86 (693)
Q Consensus 10 ~~~~~~~~~--~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~-l~~~~~l~~i~lvVvDE~H~l~d~~rg~~l 86 (693)
..+.+.++. .++.+.|+..... . ..|.|+|...+. +. .+.....+.+++||+||||+++... +
T Consensus 98 ~~~~~~~~~~~~~g~~~~~~~~~~------~-~~i~vat~qtl~---~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~ 163 (442)
T COG1061 98 EALKKFLLLNDEIGIYGGGEKELE------P-AKVTVATVQTLA---RRQLLDEFLGNEFGLIIFDEVHHLPAPS----Y 163 (442)
T ss_pred HHHHHhcCCccccceecCceeccC------C-CcEEEEEhHHHh---hhhhhhhhcccccCEEEEEccccCCcHH----H
Confidence 444444454 3555665432111 1 479999998753 32 2222233479999999999998643 2
Q ss_pred HHHHHHHhccCCCce-EEEEcCcCCC-----HHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecC----CCCchh--
Q psy15878 87 ECVVSKVLYLKKSIQ-IFAMSATIGN-----INALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFD----GKSLTE-- 154 (693)
Q Consensus 87 e~il~~l~~~~~~~q-ii~lSATl~n-----~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~----~~~~~~-- 154 (693)
..+...+ .... ++|||||++. ..++...+|...+...+... +.+........+.+.. ......
T Consensus 164 ~~~~~~~----~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~l-i~~g~Lap~~~~~i~~~~t~~~~~~~~~ 238 (442)
T COG1061 164 RRILELL----SAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKEL-IDEGYLAPYKYVEIKVTLTEDEEREYAK 238 (442)
T ss_pred HHHHHhh----hcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHH-HhCCCccceEEEEEEeccchHHHHHhhh
Confidence 2333332 2233 8999999753 34455555432222221100 0000000001111100 000000
Q ss_pred -h-hcc---------------cccccCCCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhh
Q psy15878 155 -I-YAD---------------NLDYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQE 214 (693)
Q Consensus 155 -~-~~~---------------~~~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~ 214 (693)
. +.. .............+..++. .+.+++|||.+..++..++..+.. .
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~--~---------- 306 (442)
T COG1061 239 ESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA--P---------- 306 (442)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC--C----------
Confidence 0 000 0000001112222333333 377999999999999999998876 1
Q ss_pred HHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCC
Q psy15878 215 KEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVG 294 (693)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g 294 (693)
.++....+..+..+|..+.+.|+.|.+++||++.++.+|+|+|++.++|.-..
T Consensus 307 -------------------------~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~-- 359 (442)
T COG1061 307 -------------------------GIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP-- 359 (442)
T ss_pred -------------------------CceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCC--
Confidence 12678899999999999999999999999999999999999999999887643
Q ss_pred CccCCHHHHHHHhhccCCC
Q psy15878 295 RDFISLNMYKQMVGRAGRT 313 (693)
Q Consensus 295 ~~~~s~~~~~Qr~GRaGR~ 313 (693)
.-|...|.||+||.-|+
T Consensus 360 --t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 360 --TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred --CCcHHHHHHHhhhhccC
Confidence 34899999999999996
No 105
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.60 E-value=1.2e-14 Score=166.49 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=98.0
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||||+|++.++.++..|.+.++ .+.++||+++..+|..+
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi------------------------------------~~~~~h~~~~~~~R~~~ 488 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGI------------------------------------KVRYLHSDIDTLERVEI 488 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcce------------------------------------eEEEEECCCCHHHHHHH
Confidence 788999999999999999999987332 28899999999999999
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCCcEEEEecCc--CCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY--VGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~--~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
++.|+.|.+.|+|||+.+++|+|+|.+++||.++. .| -|.+..+|+||+||+||.. .|.|+++++..
T Consensus 489 l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG-~~~~~~~yiqr~GR~gR~~---~G~~i~~~~~~ 557 (652)
T PRK05298 489 IRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEG-FLRSERSLIQTIGRAARNV---NGKVILYADKI 557 (652)
T ss_pred HHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcccc-cCCCHHHHHHHhccccCCC---CCEEEEEecCC
Confidence 99999999999999999999999999999888653 12 2568899999999999964 89999999854
No 106
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=5.3e-14 Score=159.89 Aligned_cols=117 Identities=21% Similarity=0.160 Sum_probs=94.4
Q ss_pred ChhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceE
Q psy15878 168 GPDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVA 243 (693)
Q Consensus 168 ~~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~ 243 (693)
+.+.+.+.+. .+.|+||||+|+..++.++..|.+.++. ..
T Consensus 415 K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~------------------------------------~~ 458 (830)
T PRK12904 415 KFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIP------------------------------------HN 458 (830)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCc------------------------------------eE
Confidence 3445555553 7899999999999999999999884443 77
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCc--------------------------------------E
Q psy15878 244 YHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQ--------------------------------------R 285 (693)
Q Consensus 244 ~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~--------------------------------------~ 285 (693)
.+||. +.+|+..+.+|+.+...|+|||+++++|+||+-- -
T Consensus 459 vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL 536 (830)
T PRK12904 459 VLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGL 536 (830)
T ss_pred eccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCC
Confidence 78995 7899999999999999999999999999999853 1
Q ss_pred EEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 286 VIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 286 vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
+||-.. .+-|..-=.|-.|||||.| ++|.+-.+.+-.
T Consensus 537 hVigTe----rhesrRid~QlrGRagRQG--dpGss~f~lSle 573 (830)
T PRK12904 537 HVIGTE----RHESRRIDNQLRGRSGRQG--DPGSSRFYLSLE 573 (830)
T ss_pred EEEecc----cCchHHHHHHhhcccccCC--CCCceeEEEEcC
Confidence 233221 2567777899999999999 799988887755
No 107
>KOG4150|consensus
Probab=99.59 E-value=3.7e-14 Score=148.73 Aligned_cols=288 Identities=14% Similarity=0.128 Sum_probs=180.7
Q ss_pred CCCcEEEEcccchHH--HHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhcc------CCCceEEEEcCcC
Q psy15878 38 NKKSIYICTIEKGSK--LIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYL------KKSIQIFAMSATI 109 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~--Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~------~~~~qii~lSATl 109 (693)
.+.+++++.|..+.. |-+++-..-.+-...++++||+|.+.. -+|......+.++..+ +.+.|++-.|||+
T Consensus 383 ~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~ 461 (1034)
T KOG4150|consen 383 IGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF-PTKALAQDQLRALSDLIKGFEASINMGVYDGDTPY 461 (1034)
T ss_pred cCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec-chhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCc
Confidence 678999999987653 222222223345678999999998764 5777777777776544 4578999999999
Q ss_pred CCHHHHH-HhhcCC---CccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHhcCCceEEE
Q psy15878 110 GNINALS-TFIEGI---TYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIF 185 (693)
Q Consensus 110 ~n~~~la-~~l~~~---~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF 185 (693)
.++-.+. +..+.. ++..+..|..-...+..+....+........+.+ .....+.+++..+-++|.|
T Consensus 462 K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~----------E~s~~~~~~i~~~~R~IAF 531 (1034)
T KOG4150|consen 462 KDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVV----------EVSHLFAEMVQHGLRCIAF 531 (1034)
T ss_pred CCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHH----------HHHHHHHHHHHcCCcEEEe
Confidence 8754443 333322 3344444544433332221111110000000000 1122345566699999999
Q ss_pred eCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCC
Q psy15878 186 CSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGT 265 (693)
Q Consensus 186 ~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~ 265 (693)
|++|+-||.+.....+ ++ .+. .+.|. ..|..+.||.+.++|+.+|...-.|+
T Consensus 532 C~~R~~CEL~~~~~R~--I~------~ET----------------~~~LV----~~i~SYRGGY~A~DRRKIE~~~F~G~ 583 (1034)
T KOG4150|consen 532 CPSRKLCELVLCLTRE--IL------AET----------------APHLV----EAITSYRGGYIAEDRRKIESDLFGGK 583 (1034)
T ss_pred ccHHHHHHHHHHHHHH--HH------HHh----------------hHHHH----HHHHhhcCccchhhHHHHHHHhhCCe
Confidence 9999999988766554 22 000 11121 12566889999999999999999999
Q ss_pred CeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc-ccHHHH---HHHHhCC
Q psy15878 266 LQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM-QDFLRF---SSMMNAG 341 (693)
Q Consensus 266 i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~-~~~~~~---~~~l~~~ 341 (693)
+.-++||+.|+.|||+...+.|+..++ |.|.+.+.|..|||||.. .+..++.+.... .+..++ ..++..+
T Consensus 584 L~giIaTNALELGIDIG~LDAVl~~GF----P~S~aNl~QQ~GRAGRRN--k~SLavyva~~~PVDQ~Y~~HP~~l~~~p 657 (1034)
T KOG4150|consen 584 LCGIIATNALELGIDIGHLDAVLHLGF----PGSIANLWQQAGRAGRRN--KPSLAVYVAFLGPVDQYYMSHPDKLFGSP 657 (1034)
T ss_pred eeEEEecchhhhccccccceeEEEccC----chhHHHHHHHhccccccC--CCceEEEEEeccchhhHhhcCcHHHhCCC
Confidence 999999999999999999999999887 779999999999999998 455555555433 133332 2334444
Q ss_pred CCcccccCCchhHHHHHHHHHHhcccCCH
Q psy15878 342 PEPISSHMDPPTLVDLILEVVAANLCSSL 370 (693)
Q Consensus 342 ~~~i~s~l~~~~l~~~il~~i~~~~~~~~ 370 (693)
...+.-.+....+...-+++.+....-+.
T Consensus 658 N~EL~LD~~N~~iL~~HlQCAA~ELPIN~ 686 (1034)
T KOG4150|consen 658 NEELHLDSQNKHVLMQHLQCAALELPINL 686 (1034)
T ss_pred cceeEEecccHHHHHHHHhHHhhcCcccc
Confidence 43333333233333334455555444333
No 108
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=5.1e-14 Score=160.18 Aligned_cols=107 Identities=24% Similarity=0.234 Sum_probs=89.4
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.|+||||+|+..++.++..|.+.++. ...+||.+...+|..+
T Consensus 443 ~g~PVLVgt~Sie~sE~ls~~L~~~gi~------------------------------------h~vLnak~~q~Ea~ii 486 (896)
T PRK13104 443 RKQPVLVGTVSIEASEFLSQLLKKENIK------------------------------------HQVLNAKFHEKEAQII 486 (896)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCC------------------------------------eEeecCCCChHHHHHH
Confidence 8999999999999999999999985544 7889999999999999
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCCc--------------------------------------EEEEecCcCCCccCC
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPAQ--------------------------------------RVIIRDSYVGRDFIS 299 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~~--------------------------------------~vVI~~~~~g~~~~s 299 (693)
.++|+.| .|+|||+++++|+||.-- -+||-.. .+-|
T Consensus 487 a~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTe----rhes 560 (896)
T PRK13104 487 AEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSE----RHES 560 (896)
T ss_pred HhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeec----cCch
Confidence 9999999 499999999999998621 1233211 2456
Q ss_pred HHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 300 LNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 300 ~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
..-=.|-.|||||.| ++|.+-.+.+-.
T Consensus 561 rRID~QLrGRaGRQG--DPGss~f~lSle 587 (896)
T PRK13104 561 RRIDNQLRGRAGRQG--DPGSSRFYLSLE 587 (896)
T ss_pred HHHHHHhccccccCC--CCCceEEEEEcC
Confidence 666789999999999 799988887655
No 109
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.57 E-value=1.6e-14 Score=131.58 Aligned_cols=105 Identities=34% Similarity=0.485 Sum_probs=93.1
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.++++||||+++..++.+++.|.+. . .++.++||+++..+|..+
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~--~----------------------------------~~~~~~~~~~~~~~~~~~ 70 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP--G----------------------------------IKVAALHGDGSQEEREEV 70 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc--C----------------------------------CcEEEEECCCCHHHHHHH
Confidence 4789999999999999999988751 1 349999999999999999
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEE
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIML 324 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l 324 (693)
.+.|++|..++|++|+.+++|+|+|..+.||..+. +.+..++.|++||+||.| ..|.++++
T Consensus 71 ~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~----~~~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 71 LKDFREGEIVVLVATDVIARGIDLPNVSVVINYDL----PWSPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCC----CCCHHHheecccccccCC--CCceEEeC
Confidence 99999999999999999999999998888777653 779999999999999999 47877653
No 110
>KOG0953|consensus
Probab=99.54 E-value=9.5e-14 Score=146.14 Aligned_cols=257 Identities=20% Similarity=0.271 Sum_probs=168.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|.|..++. .|+.+..++|..-++.... -..++.+=||-|+.. .-..+++.|+||++|+.|+
T Consensus 227 LA~EV~~r~na----~gipCdL~TGeE~~~~~~~--~~~a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp 290 (700)
T KOG0953|consen 227 LAHEVYDRLNA----LGIPCDLLTGEERRFVLDN--GNPAQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDP 290 (700)
T ss_pred HHHHHHHHhhh----cCCCccccccceeeecCCC--CCcccceEEEEEEee----------cCCceEEEEehhHHhhcCc
Confidence 45666665544 5788888998654333222 145788999999741 2256899999999999999
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNL 160 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (693)
.||..|...+--+. ...+.+.|=-|-++=..++.+-.|.+ +.+..|-. -..+
T Consensus 291 ~RGwAWTrALLGl~--AdEiHLCGepsvldlV~~i~k~TGd~--------vev~~YeR----------l~pL-------- 342 (700)
T KOG0953|consen 291 SRGWAWTRALLGLA--ADEIHLCGEPSVLDLVRKILKMTGDD--------VEVREYER----------LSPL-------- 342 (700)
T ss_pred ccchHHHHHHHhhh--hhhhhccCCchHHHHHHHHHhhcCCe--------eEEEeecc----------cCcc--------
Confidence 99999876554332 33444444333332233333333221 11111100 0000
Q ss_pred cccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHH
Q psy15878 161 DYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECI 238 (693)
Q Consensus 161 ~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~ 238 (693)
...+.+..-+. ..+.++| |-|++++-.+...+.+.+.
T Consensus 343 ------~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~---------------------------------- 381 (700)
T KOG0953|consen 343 ------VVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGN---------------------------------- 381 (700)
T ss_pred ------eehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcC----------------------------------
Confidence 00011122222 3445544 5578888887777766322
Q ss_pred hhceEEEcCCCCHHHHHHHHHHHhC--CCCeEEEecchhhcccCCCCcEEEEecC--cCCC--ccCCHHHHHHHhhccCC
Q psy15878 239 LYGVAYHHADLTAGERRLIEEAYLA--GTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYKQMVGRAGR 312 (693)
Q Consensus 239 ~~gv~~~h~~l~~~eR~~ve~~f~~--g~i~VLvaT~~l~~Gvnlp~~~vVI~~~--~~g~--~~~s~~~~~Qr~GRaGR 312 (693)
..+++.+|+||++.|..--..|.+ +..+|||||+...+|+|+.-.++|+.+- |.|+ .+++.++.+|.+|||||
T Consensus 382 -~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGR 460 (700)
T KOG0953|consen 382 -HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGR 460 (700)
T ss_pred -cceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccc
Confidence 238999999999999999999987 9999999999999999999999998753 4454 47999999999999999
Q ss_pred CCCC-CCCcEEEEecccccHHHHHHHHhCCCCcc
Q psy15878 313 TGLQ-ESGESIMLCKTMQDFLRFSSMMNAGPEPI 345 (693)
Q Consensus 313 ~g~d-~~G~~i~l~~~~~~~~~~~~~l~~~~~~i 345 (693)
.|.. ..|.+..+..+ +...+.+.++.+.+|+
T Consensus 461 f~s~~~~G~vTtl~~e--DL~~L~~~l~~p~epi 492 (700)
T KOG0953|consen 461 FGSKYPQGEVTTLHSE--DLKLLKRILKRPVEPI 492 (700)
T ss_pred cccCCcCceEEEeeHh--hHHHHHHHHhCCchHH
Confidence 8743 34666655544 5677788888887654
No 111
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.54 E-value=2e-13 Score=163.02 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=84.0
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
..+++||||.++.+|+.++..|.+ .. .....+ . -...+..+||+.+ ++..+
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~--~f-----------------~~~~~~-~-------~~~~v~~itg~~~--~~~~l 747 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKE--AF-----------------KKKYGQ-V-------EDDAVIKITGSID--KPDQL 747 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHH--HH-----------------HhhcCC-c-------CccceEEEeCCcc--chHHH
Confidence 447999999999999999988876 11 000000 0 0012556788875 56789
Q ss_pred HHHHhCCCC-eEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEec
Q psy15878 258 EEAYLAGTL-QIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCK 326 (693)
Q Consensus 258 e~~f~~g~i-~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~ 326 (693)
++.|+++.. +|+|+++.+.+|+|+|.+.+||.... +.|...|+||+||+.|..-+..-..+++++
T Consensus 748 i~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rp----vkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 748 IRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRR----VRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HHHHhCCCCCeEEEEecccccCCCcccccEEEEecC----CCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 999999887 79999999999999999888887652 568999999999999976321223444444
No 112
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.53 E-value=3.1e-14 Score=117.30 Aligned_cols=71 Identities=32% Similarity=0.488 Sum_probs=67.6
Q ss_pred hceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCC
Q psy15878 240 YGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTG 314 (693)
Q Consensus 240 ~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g 314 (693)
..+..+||+++..+|..+++.|++|..+|||||+.+++|||+|.+++||..+. |.+..+|.|++||+||.|
T Consensus 8 ~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~----~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 8 IKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP----PWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS----ESSHHHHHHHHTTSSTTT
T ss_pred CcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc----CCCHHHHHHHhhcCCCCC
Confidence 45999999999999999999999999999999999999999999999999874 789999999999999986
No 113
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=99.52 E-value=6.1e-14 Score=147.95 Aligned_cols=209 Identities=14% Similarity=0.025 Sum_probs=163.0
Q ss_pred EEecHHHHHHHHcCCChhHHHHHHHhhhhhhccccccccccEEEeeccCCccCCCCCccccccchhhHhhhcChhHHHHH
Q psy15878 422 LSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVA 501 (693)
Q Consensus 422 ~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~~~~~~l~~~l~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 501 (693)
+.+|++|+++|++||++.|+..|.+.+.... ...+.|++++.+.+|. ++ .++.+.......+ .
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~---~~~~lL~~ls~a~Ef~-----~i--~vR~~E~~~l~~l-------~ 64 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKM---TTKDLLRILSMSSEFD-----QI--PVRHEEDLLLEEL-------A 64 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCC---CHHHHHHHHhCcHhhC-----CC--CCCccHHHHHHHH-------H
Confidence 5799999999999999999999999887543 3567899999987774 22 2344443333222 1
Q ss_pred HHcCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCc
Q psy15878 502 EALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELP 581 (693)
Q Consensus 502 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~ 581 (693)
+.+++... .+.. .....++.++|++|+++.++..-. -.+|+..++++|.|++.++.++|...+
T Consensus 65 ~~~~~~~~------~~~~------~~~~~K~~lLLqa~i~r~~l~~~~-----l~~D~~~vl~~a~rll~al~di~~~~~ 127 (312)
T smart00611 65 EKLPIRLE------NPSL------DDPHVKANLLLQAHLSRLKLPSFA-----LESDTVYVLQNAGRLLQAMVDIALERG 127 (312)
T ss_pred HhCCcCcC------CCCC------CCchHHHHHHHHHHHccCCCCchh-----HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222110 0000 012568889999999998652111 367999999999999999999999998
Q ss_pred chhh-hHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 582 ELWC-YKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 582 ~~~~-~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
|. ....+..|.+++.+|++++..+|+++|++|+.++++|.++|+.|+++|..++++++...+ |++.+.+++|.+.+
T Consensus 128 --~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~ll-~~~~~~~~~i~~~~ 204 (312)
T smart00611 128 --WLSTALNALNLSQMIIQALWPTDSPLLQLPHLPEEILKRLEKKKVLSLEDLLELEDEERGELL-GLLDAEGERVYKVL 204 (312)
T ss_pred --hHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCHHHHHHHHhCCCCCHHHHHhcCHHHHHHHH-cCCHHHHHHHHHHH
Confidence 54 355688999999999999999999999999999999999999999999999999999977 89989999999999
Q ss_pred Hhhhhhh
Q psy15878 661 KLHFITK 667 (693)
Q Consensus 661 ~~~~~~~ 667 (693)
+++...+
T Consensus 205 ~~~P~l~ 211 (312)
T smart00611 205 SRLPKLN 211 (312)
T ss_pred HhCCcce
Confidence 8876633
No 114
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.49 E-value=2.8e-13 Score=157.48 Aligned_cols=203 Identities=17% Similarity=0.194 Sum_probs=132.2
Q ss_pred ccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHHhhcCCCccCC-CCcccceeeEEeCce
Q psy15878 66 IGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN--INALSTFIEGITYVEN-SRPTKHSEYVTVDKR 142 (693)
Q Consensus 66 i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~~l~~~~~~~~-~rpv~l~~~~~~~~~ 142 (693)
.+++|+||+|.+.+..--..+..++..+. ..+..+|+||||+|. .+.+...++....... ....+....
T Consensus 339 ~S~vIlDE~h~~~~~~~~~~l~~~i~~l~--~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e------ 410 (733)
T COG1203 339 TSLVILDEVHLYADETMLAALLALLEALA--EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDE------ 410 (733)
T ss_pred hhchhhccHHhhcccchHHHHHHHHHHHH--hCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccc------
Confidence 47999999999987543444555555544 346789999999996 3334444432211000 000000000
Q ss_pred eeeecCCCCchhhhc--ccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHH
Q psy15878 143 VFQSFDGKSLTEIYA--DNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIE 220 (693)
Q Consensus 143 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~ 220 (693)
....+. .+..-.........+..-+.++++++|.|||++.|..++..|+..+.
T Consensus 411 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~---------------- 465 (733)
T COG1203 411 ---------PGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP---------------- 465 (733)
T ss_pred ---------cccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC----------------
Confidence 000000 00000000001112222233899999999999999999999987211
Q ss_pred HHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHh----CCCCeEEEecchhhcccCCCCcEEEEecCcCCCc
Q psy15878 221 ALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYL----AGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRD 296 (693)
Q Consensus 221 ~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~----~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~ 296 (693)
.+..+||.++..+|...++.++ .+...|+|||++.+.|||+... ++|. +
T Consensus 466 --------------------~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd-~mIT------e 518 (733)
T COG1203 466 --------------------KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFD-VLIT------E 518 (733)
T ss_pred --------------------CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccC-eeee------c
Confidence 2899999999999999888655 4678999999999999999854 4443 3
Q ss_pred cCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 297 FISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 297 ~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
+-+..+.+||+||++|.|.+..|.++++....
T Consensus 519 ~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 519 LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred CCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 45789999999999999977788888877654
No 115
>KOG0952|consensus
Probab=99.48 E-value=1e-14 Score=163.28 Aligned_cols=234 Identities=24% Similarity=0.319 Sum_probs=166.8
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|....|.......|+++..++|+.... ... ...++++|+|||++....++|.....+++++++|+||.|++++
T Consensus 985 lvker~~Dw~~r~~~~g~k~ie~tgd~~pd--~~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~- 1060 (1230)
T KOG0952|consen 985 LVKERSDDWSKRDELPGIKVIELTGDVTPD--VKA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE- 1060 (1230)
T ss_pred hhcccccchhhhcccCCceeEeccCccCCC--hhh-eecCceEEcccccccCccccccchhhhccccceeecccccccC-
Confidence 466777778776555599999999875432 222 3789999999999999999999999999999999999999987
Q ss_pred CChHHHHHHHHHHhcc----CCCceEEEEcCcCCCHHHHHHhhcCC---CccCCCCcccceeeEEeCceeeeecCCCCch
Q psy15878 81 QRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIEGI---TYVENSRPTKHSEYVTVDKRVFQSFDGKSLT 153 (693)
Q Consensus 81 ~rg~~le~il~~l~~~----~~~~qii~lSATl~n~~~la~~l~~~---~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~ 153 (693)
+|||.++.+.++..+. .+..|++++|--+.|..++++|++.. .|.+..||+|+..++.--...+..+.
T Consensus 1061 ~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cpr----- 1135 (1230)
T KOG0952|consen 1061 DRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPR----- 1135 (1230)
T ss_pred CCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchh-----
Confidence 8999999999887753 34679999999999999999999875 36778899999877743222222221
Q ss_pred hhhcccccccCCCCChhhHHHHH--hcCCceEEEeCChHHHHHHHHHhhhcc--CCCCcccchhhHHHHHHHHHhccCCc
Q psy15878 154 EIYADNLDYSLTGSGPDAVLHLV--QGNLMVLIFCSSKIACSNLALRLQFDR--FPGTKEYKKQEKEDLIEALKEENDGK 229 (693)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~l~~l~--~~~~~vLVF~~sr~~~e~la~~L~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (693)
+. .........+- .+..++|||+.+++.....|..|..-. -.+|..+...+..++-..+.+.
T Consensus 1136 ---m~-------smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~de~e~e~~~~~~---- 1201 (1230)
T KOG0952|consen 1136 ---MM-------SMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMDELELEIIMSKV---- 1201 (1230)
T ss_pred ---hh-------hcccHHHHHHhcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCCHHHHHHHHHHh----
Confidence 11 11111222222 288999999999998877777665511 1123444222222222222222
Q ss_pred cchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 230 LSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 230 ~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+..|+.+++.|++.||+|+...+|..+
T Consensus 1202 ~d~~Lk~tl~Fgi~lhhagl~~~dr~~~ 1229 (1230)
T KOG0952|consen 1202 RDTNLKLTLPFGIGLHHAGLIENDRKIV 1229 (1230)
T ss_pred cccchhhhhhhhhhhhhhhccccccccC
Confidence 2357889999999999999999888643
No 116
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=2.5e-12 Score=146.12 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=89.5
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.|+||||+|...++.++..|...++. ...+||.++..++..+
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~gi~------------------------------------~~vLnak~~~~Ea~ii 491 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKEKIP------------------------------------HEVLNAKFHEREAEIV 491 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCC------------------------------------eEeccCcccHHHHHHH
Confidence 8999999999999999999999884443 7789999999999999
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCCc-------------------------------------EEEEecCcCCCccCCH
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPAQ-------------------------------------RVIIRDSYVGRDFISL 300 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~~-------------------------------------~vVI~~~~~g~~~~s~ 300 (693)
.++|+.|. |+|||+++++|.||.-- -+||-.. .+-|.
T Consensus 492 ~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTe----rheSr 565 (908)
T PRK13107 492 AQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTE----RHESR 565 (908)
T ss_pred HhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecc----cCchH
Confidence 99999998 99999999999998621 1333221 24566
Q ss_pred HHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 301 NMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 301 ~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
.-=.|-.|||||.| ++|.+-.+++-.
T Consensus 566 RID~QLrGRaGRQG--DPGss~f~lSlE 591 (908)
T PRK13107 566 RIDNQLRGRAGRQG--DAGSSRFYLSME 591 (908)
T ss_pred HHHhhhhcccccCC--CCCceeEEEEeC
Confidence 66789999999999 799988888765
No 117
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=2.3e-12 Score=146.91 Aligned_cols=164 Identities=19% Similarity=0.226 Sum_probs=119.9
Q ss_pred ceEEEEcCcCCC-HHHHHHhhcCCC-ccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHh
Q psy15878 100 IQIFAMSATIGN-INALSTFIEGIT-YVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ 177 (693)
Q Consensus 100 ~qii~lSATl~n-~~~la~~l~~~~-~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 177 (693)
.++-|||.|... ..+|.+..+-.+ ..++.+|+.... .+..+|. ....+.+.+.+.+.
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY~L~Vv~IPTnrP~~R~D---~~d~vy~------------------t~~eK~~Ali~~I~ 592 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIYKLDVVVIPTNKPIVRKD---MDDLVYK------------------TRREKYNAIVLKVE 592 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHhCCcEEECCCCCCcceec---CCCeEec------------------CHHHHHHHHHHHHH
Confidence 467899999864 556666555443 234444443221 1111221 12234455555553
Q ss_pred ----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHH
Q psy15878 178 ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGE 253 (693)
Q Consensus 178 ----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~e 253 (693)
.+.|+||||+|+..++.++..|...++. ...+|+ .+.+
T Consensus 593 ~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~------------------------------------h~vLna--kq~~ 634 (1025)
T PRK12900 593 ELQKKGQPVLVGTASVEVSETLSRMLRAKRIA------------------------------------HNVLNA--KQHD 634 (1025)
T ss_pred HHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCC------------------------------------ceeecC--CHHH
Confidence 7899999999999999999999885443 667887 5789
Q ss_pred HHHHHHHHhCCCCeEEEecchhhcccCCC---CcE-----EEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEe
Q psy15878 254 RRLIEEAYLAGTLQIICCTSTLAAGVNLP---AQR-----VIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLC 325 (693)
Q Consensus 254 R~~ve~~f~~g~i~VLvaT~~l~~Gvnlp---~~~-----vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~ 325 (693)
|+....+|+.+...|+|||+++++|+||+ .+. +||... .|-|...|.|+.||+||.| .+|.++.++
T Consensus 635 REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgte----rhes~Rid~Ql~GRtGRqG--dpGsS~ffv 708 (1025)
T PRK12900 635 REAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSE----RHESRRIDRQLRGRAGRQG--DPGESVFYV 708 (1025)
T ss_pred hHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCC----CCchHHHHHHHhhhhhcCC--CCcceEEEe
Confidence 99999999999999999999999999999 332 345554 3678889999999999999 799999999
Q ss_pred ccc
Q psy15878 326 KTM 328 (693)
Q Consensus 326 ~~~ 328 (693)
+..
T Consensus 709 Sle 711 (1025)
T PRK12900 709 SLE 711 (1025)
T ss_pred chh
Confidence 876
No 118
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.36 E-value=8.5e-12 Score=131.35 Aligned_cols=112 Identities=23% Similarity=0.271 Sum_probs=97.7
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||-+=|++.||.+.++|.+.|.. |.++|+++..-+|.++
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gik------------------------------------v~YlHSdidTlER~eI 488 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIK------------------------------------VRYLHSDIDTLERVEI 488 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCce------------------------------------EEeeeccchHHHHHHH
Confidence 7899999999999999999999985444 9999999999999999
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCc-cCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRD-FISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~-~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
.+..|.|...|||.-+.|-.|+|+|.+..|.-.+.+... ..|-.+.+|-+|||.|.- .|+++++++.-
T Consensus 489 irdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~---~GkvIlYAD~i 557 (663)
T COG0556 489 IRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVILYADKI 557 (663)
T ss_pred HHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhcc---CCeEEEEchhh
Confidence 999999999999999999999999999987544322111 357889999999999997 89999888654
No 119
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.33 E-value=5.1e-12 Score=104.71 Aligned_cols=71 Identities=32% Similarity=0.479 Sum_probs=65.6
Q ss_pred hceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCC
Q psy15878 240 YGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTG 314 (693)
Q Consensus 240 ~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g 314 (693)
.++.++||+++.++|..+++.|++|..+|+++|+++++|+|+|.++.||..+. |.+..+|.||+||++|.|
T Consensus 12 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~----~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 12 IKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL----PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC----CCCHHHHHHhhcccccCC
Confidence 45899999999999999999999999999999999999999998888877653 789999999999999976
No 120
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.32 E-value=4.9e-11 Score=140.22 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=93.4
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.+||||+........+...|...+ .+...+||+++..+|..+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~g------------------------------------~~y~rIdGsts~~eRq~~ 529 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYRG------------------------------------YQYCRIDGNTGGEDRDAS 529 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHcC------------------------------------CcEEEECCCCCHHHHHHH
Confidence 78899999998887777777665422 237789999999999999
Q ss_pred HHHHhC---CCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLA---GTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~---g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
.+.|.+ +...+|++|.+.+.|+|+...++||.++. +.++....|++|||-|-|+...-.+|.++...
T Consensus 530 Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~----dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 530 IDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDS----DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred HHHhccccCCceEEEEeccccccCCchhhCCEEEEeCC----CCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 999975 23467899999999999999999999874 78999999999999999987777777777766
No 121
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.26 E-value=1.8e-10 Score=130.32 Aligned_cols=292 Identities=17% Similarity=0.166 Sum_probs=159.7
Q ss_pred HHHHhhhhCcEEEEeeccCCCCCcccccc----CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccC--CCC-
Q psy15878 9 LAKAAEEFKFYLEEYAGVKGQYPPTKRQL----NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLN--EPQ- 81 (693)
Q Consensus 9 l~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~--d~~- 81 (693)
+.+|-..+|.+|..++++.++.+....|. ++..|+|+| ++.+ .-.++++++|||||=|.-+ +.+
T Consensus 262 ~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt--------RSAl-F~Pf~~LGLIIvDEEHD~sYKq~~~ 332 (730)
T COG1198 262 LARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT--------RSAL-FLPFKNLGLIIVDEEHDSSYKQEDG 332 (730)
T ss_pred HHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe--------chhh-cCchhhccEEEEeccccccccCCcC
Confidence 44555556789999999988877777664 789999999 4432 2356999999999999543 111
Q ss_pred -ChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEE----eCceeeeecCCCCchhhh
Q psy15878 82 -RGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVT----VDKRVFQSFDGKSLTEIY 156 (693)
Q Consensus 82 -rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~----~~~~~~~~~~~~~~~~~~ 156 (693)
|...-+..+.|- ...++++|+-|||++ .+.+..-... .++...+..... ....+.+.... .....+
T Consensus 333 prYhARdvA~~Ra--~~~~~pvvLgSATPS-LES~~~~~~g-----~y~~~~L~~R~~~a~~p~v~iiDmr~e-~~~~~~ 403 (730)
T COG1198 333 PRYHARDVAVLRA--KKENAPVVLGSATPS-LESYANAESG-----KYKLLRLTNRAGRARLPRVEIIDMRKE-PLETGR 403 (730)
T ss_pred CCcCHHHHHHHHH--HHhCCCEEEecCCCC-HHHHHhhhcC-----ceEEEEccccccccCCCcceEEecccc-ccccCc
Confidence 333333333332 245789999999974 4444433221 111111111100 00000000000 000000
Q ss_pred cccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhcc--CCC----------------------------
Q psy15878 157 ADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDR--FPG---------------------------- 206 (693)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~--~~~---------------------------- 206 (693)
.+ .....+.+.+.+..+.++|+|+|.|..+-.+.=.=+..- ...
T Consensus 404 ~l------S~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~ 477 (730)
T COG1198 404 SL------SPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQS 477 (730)
T ss_pred cC------CHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCC
Confidence 00 011122333334489999999999864422110000000 000
Q ss_pred -Cc----cc--chhhHHHHHHHHHhccCCccchHHHHHH-hhceEEEcCCCCHHH--HHHHHHHHhCCCCeEEEecchhh
Q psy15878 207 -TK----EY--KKQEKEDLIEALKEENDGKLSTNLEECI-LYGVAYHHADLTAGE--RRLIEEAYLAGTLQIICCTSTLA 276 (693)
Q Consensus 207 -~~----~~--~~~~~~~~~~~l~~~~~~~~~~~L~~~~-~~gv~~~h~~l~~~e--R~~ve~~f~~g~i~VLvaT~~l~ 276 (693)
|+ .+ .-...+.+.++ |...+ ...|...-++.+... -+..+..|.+|+.+|||.|..++
T Consensus 478 Cp~Cgs~~L~~~G~Gterieee------------L~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmia 545 (730)
T COG1198 478 CPECGSEHLRAVGPGTERIEEE------------LKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIA 545 (730)
T ss_pred CCCCCCCeeEEecccHHHHHHH------------HHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhh
Confidence 00 00 00011112222 22222 234777777765533 45778999999999999999999
Q ss_pred cccCCCCcEEEEecCcC---CC-cc----CCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHh
Q psy15878 277 AGVNLPAQRVIIRDSYV---GR-DF----ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMN 339 (693)
Q Consensus 277 ~Gvnlp~~~vVI~~~~~---g~-~~----~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~ 339 (693)
.|.|+|+++.|.--+.+ +. ++ .....+.|-+|||||.+ ..|.+++-+..+ +...+.....
T Consensus 546 KG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~--~~G~VvIQT~~P-~hp~i~~~~~ 613 (730)
T COG1198 546 KGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAG--KPGEVVIQTYNP-DHPAIQALKR 613 (730)
T ss_pred cCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCC--CCCeEEEEeCCC-CcHHHHHHHh
Confidence 99999998876432211 11 12 23456789999999997 689999888776 4444443333
No 122
>KOG0921|consensus
Probab=99.25 E-value=1.1e-11 Score=136.75 Aligned_cols=340 Identities=18% Similarity=0.203 Sum_probs=202.4
Q ss_pred CCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHh
Q psy15878 39 KKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTF 118 (693)
Q Consensus 39 ~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~ 118 (693)
..-|..||-|-+ ++. ...-+..++++|+||+|+.. .-+..+..++.-+....++.++++||||+ |.+.|..+
T Consensus 472 yg~i~fctvgvl---lr~--~e~glrg~sh~i~deiherd--v~~dfll~~lr~m~~ty~dl~v~lmsatI-dTd~f~~~ 543 (1282)
T KOG0921|consen 472 YGSIMFCTVGVL---LRM--MENGLRGISHVIIDEIHERD--VDTDFVLIVLREMISTYRDLRVVLMSATI-DTDLFTNF 543 (1282)
T ss_pred ccceeeeccchh---hhh--hhhcccccccccchhhhhhc--cchHHHHHHHHhhhccchhhhhhhhhccc-chhhhhhh
Confidence 346888898874 333 22456789999999999874 45666777777777677889999999999 66777777
Q ss_pred hcCC-CccCCCCcccceeeE-----EeCc---------eeeeecCCCCc-hh--hhccc----ccccC-----------C
Q psy15878 119 IEGI-TYVENSRPTKHSEYV-----TVDK---------RVFQSFDGKSL-TE--IYADN----LDYSL-----------T 165 (693)
Q Consensus 119 l~~~-~~~~~~rpv~l~~~~-----~~~~---------~~~~~~~~~~~-~~--~~~~~----~~~~~-----------~ 165 (693)
++.- ......|..|...+. .... +-+........ .. .+..+ ..|.. .
T Consensus 544 f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~ 623 (1282)
T KOG0921|consen 544 FSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEK 623 (1282)
T ss_pred hccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhh
Confidence 7642 111111222211100 0000 00000000000 00 00000 00100 1
Q ss_pred CCChhhHHHHHh------cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHh
Q psy15878 166 GSGPDAVLHLVQ------GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECIL 239 (693)
Q Consensus 166 ~~~~~~l~~l~~------~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~ 239 (693)
......+..++. -.+-++||.+.......+...+...... .++-.
T Consensus 624 d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~f-----------------------------g~~~~ 674 (1282)
T KOG0921|consen 624 DIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEF-----------------------------GQANK 674 (1282)
T ss_pred cchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhh-----------------------------ccchh
Confidence 111122222222 4578999999999998888887652111 11112
Q ss_pred hceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCc--------------CCCccCCHHHHHH
Q psy15878 240 YGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY--------------VGRDFISLNMYKQ 305 (693)
Q Consensus 240 ~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~--------------~g~~~~s~~~~~Q 305 (693)
+.+...|+.++..++..|++....|..++|++|++++..+.+.++..||+... ....|.|.....|
T Consensus 675 y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eq 754 (1282)
T KOG0921|consen 675 YEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQ 754 (1282)
T ss_pred cccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHh
Confidence 34788999999999999999999999999999999999999999888887421 1124678899999
Q ss_pred HhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhc
Q psy15878 306 MVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQL 385 (693)
Q Consensus 306 r~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~ 385 (693)
|.||+||.. +|.|+.+|... -.+.+++.....+. .-.+ ..+...++.++. -.+..|+...+
T Consensus 755 r~gr~grvR---~G~~f~lcs~a-rF~~l~~~~t~em~--r~pl--hemalTikll~l-------~SI~~fl~kal---- 815 (1282)
T KOG0921|consen 755 RKGRAGRVR---PGFCFHLCSRA-RFEALEDHGTAEMF--RTPL--HEIALTIKLLRL-------GSIGEFLGKAL---- 815 (1282)
T ss_pred hcccCceec---ccccccccHHH-HHHHHHhcCcHhhh--cCcc--HHHHhhHHHHHh-------hhHHHHHhhcc----
Confidence 999999998 89999999776 34444332222221 1111 111111111111 11233433222
Q ss_pred cCchhhhhhhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHH
Q psy15878 386 KSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYS 446 (693)
Q Consensus 386 ~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~ 446 (693)
..|. -+.+..+-..|...++++.. ..+|++|+..++.++.|..++++.-
T Consensus 816 ~~~p-------~dav~e~e~~l~~m~~ld~n-----~elt~lg~~la~l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 816 QPPP-------YDAVIEAEAVLREMGALDAN-----DELTPLGRMLARLPIEPRIGKMMIL 864 (1282)
T ss_pred CCCc-------hhhccCchHHHHHhhhhhcc-----CcccchhhhhhhccCcccccceeee
Confidence 2222 12333444556666777653 4589999999999999998887654
No 123
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=99.23 E-value=3.5e-10 Score=130.54 Aligned_cols=104 Identities=15% Similarity=0.058 Sum_probs=67.2
Q ss_pred HHHHh-CCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHH---Hh-h-ccCccc-hhhhhcCCCCCHHHHH
Q psy15878 548 VAKMY-GIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQ---TL-M-YCRAPN-LRALMDLPGVKIGRAR 620 (693)
Q Consensus 548 i~~~y-~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~---rl-~-~g~~~e-l~~l~~i~gi~~~~a~ 620 (693)
++-.| |++.-+.. +....|..+..++...+. .+... ...+.. .. + ....++ ..-|..+||||++.|+
T Consensus 698 L~l~fP~l~IiwS~----s~~~TA~i~~~Lk~~e~e-pd~~~-~v~i~~~~~~~~k~~~~~~~~q~~L~~lPgI~~~~a~ 771 (814)
T TIGR00596 698 LTLHFPKLRIIWSS----SPYATAEIFEELKLGKEE-PDPAT-AAALGSDENTTAEGLKFNDGPQDFLLKLPGVTKKNYR 771 (814)
T ss_pred HHHhcCCceEEecC----CHHHHHHHHHHHHhcCCC-CCccc-ceecCcccccccccccccHHHHHHHHHCCCCCHHHHH
Confidence 34457 77766666 566666667777776542 11100 000000 00 0 001111 1226699999999999
Q ss_pred HHHHcCCCCHHHHHhcChHHHHHHhcCCC-HHHHHHHHHHHH
Q psy15878 621 QLLNAGYSSLELIARADAKEMVAKIRHLP-LRSARNLISAAK 661 (693)
Q Consensus 621 ~L~~~g~~s~~~l~~a~~~~l~~~~~~~~-~~~a~~i~~~a~ 661 (693)
.|.+. |.|+++|++|+.++|.+. +| ++.|++|.+-.+
T Consensus 772 ~ll~~-f~si~~l~~as~eeL~~~---iG~~~~A~~i~~fl~ 809 (814)
T TIGR00596 772 NLRKK-VKSIRELAKLSQNELNEL---IGDEEAAKRLYDFLR 809 (814)
T ss_pred HHHHH-cCCHHHHHhCCHHHHHHH---hCCHHHHHHHHHHhc
Confidence 99998 999999999999999994 67 999999976553
No 124
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=99.13 E-value=7.3e-11 Score=91.33 Aligned_cols=57 Identities=33% Similarity=0.536 Sum_probs=53.3
Q ss_pred hhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15878 605 LRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKL 662 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~ 662 (693)
..+|++|||||+++|++|+++||.|+++|+.+++++|.+ ++|+|+++|++|+++|+.
T Consensus 4 ~~~L~~I~Gig~~~a~~L~~~G~~t~~~l~~a~~~~L~~-i~Gig~~~a~~i~~~~~~ 60 (60)
T PF14520_consen 4 FDDLLSIPGIGPKRAEKLYEAGIKTLEDLANADPEELAE-IPGIGEKTAEKIIEAARE 60 (60)
T ss_dssp HHHHHTSTTCHHHHHHHHHHTTCSSHHHHHTSHHHHHHT-STTSSHHHHHHHHHHHHH
T ss_pred HHhhccCCCCCHHHHHHHHhcCCCcHHHHHcCCHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 357889999999999999999999999999999999998 889999999999999863
No 125
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.08 E-value=5.5e-09 Score=116.42 Aligned_cols=262 Identities=16% Similarity=0.112 Sum_probs=139.3
Q ss_pred CCcEEEEcccchHHHHhch-hccCCC--CcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHH
Q psy15878 39 KKSIYICTIEKGSKLIGSL-IQENRI--DEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINAL 115 (693)
Q Consensus 39 ~~~IiV~Tpek~~~Ll~~l-~~~~~l--~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~l 115 (693)
.++|.|+|+..+......- -....+ ..++|||+||||. +....+..++..+- .-.++++||+.+..+.
T Consensus 256 s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~dYFd-----A~~~gLTATP~~~~d~ 326 (875)
T COG4096 256 SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSILDYFD-----AATQGLTATPKETIDR 326 (875)
T ss_pred ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhHHHHHHHH-----HHHHhhccCccccccc
Confidence 5799999999865544332 112233 5589999999994 22223445555442 2345669998753222
Q ss_pred --HHhh-cCC------------CccCCCCcccceeeEEeCceeeeecCC-CCchhhhc--ccccccC--------CCCCh
Q psy15878 116 --STFI-EGI------------TYVENSRPTKHSEYVTVDKRVFQSFDG-KSLTEIYA--DNLDYSL--------TGSGP 169 (693)
Q Consensus 116 --a~~l-~~~------------~~~~~~rpv~l~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~--------~~~~~ 169 (693)
..++ |.+ -|-.+++++.+...+..++.-+...+. ........ -+..|.. .....
T Consensus 327 ~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~ 406 (875)
T COG4096 327 STYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRT 406 (875)
T ss_pred ccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchH
Confidence 2344 433 122234444443333222221111100 00000000 0011110 11112
Q ss_pred hhHHHHHh----c------CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHh
Q psy15878 170 DAVLHLVQ----G------NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECIL 239 (693)
Q Consensus 170 ~~l~~l~~----~------~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~ 239 (693)
+.+...+. . -+++||||.+..+|+.+...|.. .. |+ . ++
T Consensus 407 ~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~--~y-pe----------------~-~~----------- 455 (875)
T COG4096 407 ETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVN--EY-PE----------------Y-NG----------- 455 (875)
T ss_pred HHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHH--hC-cc----------------c-cC-----------
Confidence 23333332 2 56899999999999999999987 22 10 0 00
Q ss_pred hceEEEcCCCCHHHHHHHHHHHh-CCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCC
Q psy15878 240 YGVAYHHADLTAGERRLIEEAYL-AGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQES 318 (693)
Q Consensus 240 ~gv~~~h~~l~~~eR~~ve~~f~-~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~ 318 (693)
.=+....+.- ...+..+-..+. +.-.+|.++.+.+..|||+|.+..++.... -.|...|.||+||+-|.-.+-.
T Consensus 456 ~~a~~IT~d~-~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~----VrSktkF~QMvGRGTRl~~~~~ 530 (875)
T COG4096 456 RYAMKITGDA-EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRK----VRSKTKFKQMVGRGTRLCPDLG 530 (875)
T ss_pred ceEEEEeccc-hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhh----hhhHHHHHHHhcCccccCcccc
Confidence 0033344332 334455555444 455689999999999999999766655431 3589999999999999753322
Q ss_pred -----CcEEEEecccccHHHHHHHHhCCCCcccccC
Q psy15878 319 -----GESIMLCKTMQDFLRFSSMMNAGPEPISSHM 349 (693)
Q Consensus 319 -----G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l 349 (693)
-+.+.+++-. ..-++++..+++.+...
T Consensus 531 ~~~~dK~~F~ifDf~----~~~~~~~~~~~~~e~~~ 562 (875)
T COG4096 531 GPEQDKEFFTIFDFV----DNTEYFEMDPEMREGRV 562 (875)
T ss_pred CccccceeEEEEEhh----hhhhhhccCcccccccc
Confidence 3455555433 22344455555544443
No 126
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.06 E-value=4.1e-09 Score=120.51 Aligned_cols=107 Identities=21% Similarity=0.197 Sum_probs=77.4
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.||||-|.|....+.++..|.+.+.. ...+++.-...|-..|
T Consensus 567 ~grPvLigt~si~~se~ls~~L~~~gi~------------------------------------h~vLNak~~~~Ea~ii 610 (970)
T PRK12899 567 KGNPILIGTESVEVSEKLSRILRQNRIE------------------------------------HTVLNAKNHAQEAEII 610 (970)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCc------------------------------------ceecccchhhhHHHHH
Confidence 8899999999999999999999874433 2334444333444444
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCCcE--------EEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPAQR--------VIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~~~--------vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
-++=+. -.|.|||+.+.+|.||.--. +||-.. .+-|..--.|-.|||||.| ++|.+-.+.+-.
T Consensus 611 a~AG~~--g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTe----r~es~Rid~Ql~GRagRQG--dpGss~f~lSlE 681 (970)
T PRK12899 611 AGAGKL--GAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTS----RHQSRRIDRQLRGRCARLG--DPGAAKFFLSFE 681 (970)
T ss_pred HhcCCC--CcEEEeeccccCCcccccCchHHhcCCcEEEeec----cCchHHHHHHHhcccccCC--CCCceeEEEEcc
Confidence 333333 36999999999999985432 344322 2568888899999999999 799988888755
No 127
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.06 E-value=3.8e-10 Score=111.29 Aligned_cols=106 Identities=12% Similarity=0.095 Sum_probs=84.5
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|..+.++.+....++++..++|+....+.......+++|+|+||+++..++.+ ....+++++++|+||+|.+.+.
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~l~~lIvDE~h~~~~~ 158 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLER--GKLDLSKVKYLVLDEADRMLDM 158 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--CCCChhhCCEEEEeChHHhhcc
Confidence 57788888888887788999999988654333333335899999999998776654 3356789999999999999877
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN 111 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n 111 (693)
.++..+..++..+ ...+|++++|||+++
T Consensus 159 ~~~~~~~~~~~~l---~~~~~~~~~SAT~~~ 186 (203)
T cd00268 159 GFEDQIREILKLL---PKDRQTLLFSATMPK 186 (203)
T ss_pred ChHHHHHHHHHhC---CcccEEEEEeccCCH
Confidence 7888888887765 458999999999984
No 128
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=99.01 E-value=1e-09 Score=115.97 Aligned_cols=206 Identities=11% Similarity=0.070 Sum_probs=127.7
Q ss_pred ecHHHHHHHHcCCChhHHHHHHHhhhhhhccccccccccEEEeeccCCccCCCCCccccccchhhHhhhcChhHHHHHHH
Q psy15878 424 LTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEA 503 (693)
Q Consensus 424 ~T~lG~~~~~~~l~~~~~~~~~~~l~~~~~~~~l~~~l~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 503 (693)
+|++|+++|++||+++|+..|...+.+.. ...+.|.+++.+.+|. ++ .++.+....+..|...
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~---~~~~il~~l~~a~EF~-----~i--~~R~~E~~~l~~l~~~------- 63 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDM---SEKDILELLSSAEEFS-----EI--PVRHNEKKELNELNKK------- 63 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT-----HHHHHHHHHTSGGGC-----CS-----TTHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCC---CHHHHHHHHcCcHhHh-----hC--ccchhhHHHHHHHHHh-------
Confidence 69999999999999999999999887754 2566788888888874 32 3444444333332111
Q ss_pred cCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcch
Q psy15878 504 LGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPEL 583 (693)
Q Consensus 504 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~ 583 (693)
++++.. .+.+.+ ...+.-++|+.-++..++.... -..|...+++++..++.++.++|-..++
T Consensus 64 ~~~~~~------~~~~~~------~~~K~~~Llqa~l~r~~l~~~~-----l~~D~~~i~~~~~Rll~a~~ei~~~~~~- 125 (314)
T PF02889_consen 64 IPYPIK------KEKIND------PHIKAFVLLQAHLSRIPLPDSS-----LRQDLKYILDNAPRLLRAMIEIALEKGW- 125 (314)
T ss_dssp SSS--S------TS-TTS------HHHHHHHHHHHHHCT-----HH-----HHHHHHHHHHHHHHHHHHHHHHHHHTTB-
T ss_pred cccCcc------cccccc------HHHHHHHHHHHhccCCCcCchh-----HHhhHHhhhhhhHHHHHHHHHHHHhccc-
Confidence 111100 001110 1225558888888887765411 1348888999999999999999988883
Q ss_pred hhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 584 WCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 584 ~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
-......-.+.+.+..|+++.-.+|.|+||+|+..+++|-+.|+.|+++|..++++++..++ +..+..+++|.+.++++
T Consensus 126 ~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~~~~i~~l~~l~~~~~~e~~~ll-~~~~~~~~~i~~~~~~~ 204 (314)
T PF02889_consen 126 LSTALNALELSQCIVQALWDSDSPLLQLPHIGEESLKKLEKRGIKTLQDLRDLSPEELEELL-NRNPPFGKEILEVASRI 204 (314)
T ss_dssp CCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHHHHHHHHTT--SHHHHHHS-HHHHHHHH--S-HHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHHHHHHhccCCCcHHHHhhCCHHHHHHHH-hhhhhhHHHHHHHHHHC
Confidence 13456688899999999999899999999999999999999999999999999999999988 54558899999998766
Q ss_pred hh
Q psy15878 664 FI 665 (693)
Q Consensus 664 ~~ 665 (693)
..
T Consensus 205 P~ 206 (314)
T PF02889_consen 205 PR 206 (314)
T ss_dssp --
T ss_pred CC
Confidence 43
No 129
>KOG1123|consensus
Probab=99.00 E-value=2e-09 Score=112.48 Aligned_cols=250 Identities=16% Similarity=0.125 Sum_probs=147.5
Q ss_pred HHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHH-hchhcc---CCC--CcccEEEEecccccCC
Q psy15878 6 YQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLI-GSLIQE---NRI--DEIGLIVIDEFHMLNE 79 (693)
Q Consensus 6 ~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll-~~l~~~---~~l--~~i~lvVvDE~H~l~d 79 (693)
-+.|..|..--+-.+..++.+..+ ....++.|+|+|+-++..-- +++-.. .++ +.++++++||+|.+..
T Consensus 362 kqQfk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA 436 (776)
T KOG1123|consen 362 KQQFKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA 436 (776)
T ss_pred HHHHHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH
Confidence 334444443334455555554221 11267899999998643211 111111 122 7889999999998764
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCCC----HHHHHHhhcCCCccCCCCcccceeeE-EeCceeeeecCCCCch-
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIGN----INALSTFIEGITYVENSRPTKHSEYV-TVDKRVFQSFDGKSLT- 153 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~n----~~~la~~l~~~~~~~~~rpv~l~~~~-~~~~~~~~~~~~~~~~- 153 (693)
.-|...+..+-. .+ -+||+||+-. +.++.-.+|.+++..+|-...-..++ .+......++....+-
T Consensus 437 ~MFRRVlsiv~a-------Hc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~ 508 (776)
T KOG1123|consen 437 KMFRRVLSIVQA-------HC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYR 508 (776)
T ss_pred HHHHHHHHHHHH-------Hh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHH
Confidence 333333332222 22 2899999842 44555555666676666543333222 1111112221111100
Q ss_pred -------hhhcccccccCCCCCh---hhHHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHH
Q psy15878 154 -------EIYADNLDYSLTGSGP---DAVLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEAL 222 (693)
Q Consensus 154 -------~~~~~~~~~~~~~~~~---~~l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l 222 (693)
..+.+-+.. ...+. ..+.+... .+.++|||....-.....|-.|.
T Consensus 509 eYL~~~t~kr~lLyvM--NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~---------------------- 564 (776)
T KOG1123|consen 509 EYLRENTRKRMLLYVM--NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG---------------------- 564 (776)
T ss_pred HHHhhhhhhhheeeec--CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC----------------------
Confidence 001111111 12222 23333333 88999999887765555554443
Q ss_pred HhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHh-CCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHH
Q psy15878 223 KEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYL-AGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLN 301 (693)
Q Consensus 223 ~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~-~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~ 301 (693)
--|++|..++.+|..|++.|+ +..++.|+-+.+...++|+|..+|+|.-..-| -|..
T Consensus 565 -------------------KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~---GSRR 622 (776)
T KOG1123|consen 565 -------------------KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHG---GSRR 622 (776)
T ss_pred -------------------CceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccc---cchH
Confidence 456899999999999999999 57789999999999999999999999854211 2788
Q ss_pred HHHHHhhccCCCC
Q psy15878 302 MYKQMVGRAGRTG 314 (693)
Q Consensus 302 ~~~Qr~GRaGR~g 314 (693)
+-.||.||.-|+.
T Consensus 623 QEAQRLGRILRAK 635 (776)
T KOG1123|consen 623 QEAQRLGRILRAK 635 (776)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988864
No 130
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.99 E-value=8.5e-09 Score=119.02 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=70.4
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCc----c--cc-hhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCC-C
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTK----E--YK-KQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADL-T 250 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~----~--~~-~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l-~ 250 (693)
+++++|||.++..|..+.+.|.+ ..++. . +. .......+....+ .+ +- .++.- .
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~--~~~~~~~~~~vv~s~~~~~~~~~~~~~~------------~~--~~--~~~~~~~ 575 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDE--ELNEKFEASAIVMTGKESDDAEIRDYNK------------HI--RT--KFDKSDG 575 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHh--hcccccCCeeEEecCCccchhHHHHHHH------------Hh--cc--ccccchh
Confidence 58999999999999999998876 32110 0 00 0000000011100 00 00 00000 0
Q ss_pred HHHHHHHHHHHhC-CCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCC
Q psy15878 251 AGERRLIEEAYLA-GTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRT 313 (693)
Q Consensus 251 ~~eR~~ve~~f~~-g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~ 313 (693)
.+....+.+.|++ +.+++||+++.+..|+|.|...+++... |+....++|++||+.|.
T Consensus 576 ~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldK-----plk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 576 FEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDK-----PLKYHGLLQAIARTNRI 634 (667)
T ss_pred hhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEec-----cccccHHHHHHHHhccc
Confidence 1234568888976 7899999999999999999988776653 55556789999999995
No 131
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.97 E-value=3.9e-10 Score=107.56 Aligned_cols=107 Identities=25% Similarity=0.348 Sum_probs=81.9
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCcccccc-CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQL-NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~-~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
|+.|+++++..++...++++..++|+.........+. .+++|+|+||+++..+++. ....+.++++||+||+|.+.+
T Consensus 56 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~--~~~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 56 LAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISN--GKINISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp HHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHT--TSSTGTTESEEEEETHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCcchhhccccc--cccccccceeeccCccccccc
Confidence 4788899999998888889999888654221222222 5799999999998877765 222556699999999999987
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCC
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIG 110 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~ 110 (693)
..++..+..++.++... .+.|+++||||++
T Consensus 134 ~~~~~~~~~i~~~~~~~-~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 134 ETFRAMLKSILRRLKRF-KNIQIILLSATLP 163 (169)
T ss_dssp TTHHHHHHHHHHHSHTT-TTSEEEEEESSST
T ss_pred ccHHHHHHHHHHHhcCC-CCCcEEEEeeCCC
Confidence 77888888888876533 3689999999997
No 132
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.95 E-value=2.4e-08 Score=111.61 Aligned_cols=107 Identities=26% Similarity=0.307 Sum_probs=78.3
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.||||.+.|....+.++..|.+.+.. ...+++.-...|-..|
T Consensus 426 ~GrPVLVgt~sI~~SE~ls~~L~~~gI~------------------------------------h~vLNAk~~~~EA~II 469 (764)
T PRK12326 426 TGQPVLVGTHDVAESEELAERLRAAGVP------------------------------------AVVLNAKNDAEEARII 469 (764)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhCCCc------------------------------------ceeeccCchHhHHHHH
Confidence 8999999999999999999999884433 3445555444443334
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCCc---------------EEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEE
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPAQ---------------RVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESI 322 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~~---------------~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i 322 (693)
-++=+.| .|.|||+.+.+|.||.-- -+||-.. .+-|..-=.|-.|||||.| ++|.+-
T Consensus 470 a~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTe----rheSrRID~QLrGRaGRQG--DpGss~ 541 (764)
T PRK12326 470 AEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTG----RHRSERLDNQLRGRAGRQG--DPGSSV 541 (764)
T ss_pred HhcCCCC--cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEecc----CCchHHHHHHHhcccccCC--CCCcee
Confidence 3333333 689999999999998622 2444332 2567778899999999999 789888
Q ss_pred EEeccc
Q psy15878 323 MLCKTM 328 (693)
Q Consensus 323 ~l~~~~ 328 (693)
.+.+-+
T Consensus 542 f~lSle 547 (764)
T PRK12326 542 FFVSLE 547 (764)
T ss_pred EEEEcc
Confidence 887655
No 133
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.86 E-value=1.5e-08 Score=115.97 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=53.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccch--HHHHhchh---ccCCCCcccEEEEeccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKG--SKLIGSLI---QENRIDEIGLIVIDEFH 75 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~--~~Ll~~l~---~~~~l~~i~lvVvDE~H 75 (693)
||.+.++|+.++...+|++|+.+.|++...... ..-.+||+++|..-+ +.|-+.+. .....+.+.++||||+|
T Consensus 135 LA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err--~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvD 212 (913)
T PRK13103 135 LARRDANWMRPLYEFLGLSVGIVTPFQPPEEKR--AAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVD 212 (913)
T ss_pred HHHHHHHHHHHHhcccCCEEEEECCCCCHHHHH--HHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhh
Confidence 688999999999999999999998875432222 123599999998764 22222221 11223789999999999
Q ss_pred ccC
Q psy15878 76 MLN 78 (693)
Q Consensus 76 ~l~ 78 (693)
.+.
T Consensus 213 siL 215 (913)
T PRK13103 213 SIL 215 (913)
T ss_pred hee
Confidence 553
No 134
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.85 E-value=9e-08 Score=110.56 Aligned_cols=73 Identities=23% Similarity=0.208 Sum_probs=58.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHH----------------------hC----CCCeEEEecchhhcccCCCCcEEEEecCcCC
Q psy15878 241 GVAYHHADLTAGERRLIEEAY----------------------LA----GTLQIICCTSTLAAGVNLPAQRVIIRDSYVG 294 (693)
Q Consensus 241 gv~~~h~~l~~~eR~~ve~~f----------------------~~----g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g 294 (693)
.+.++||..+...|..+|+.. ++ +...|+|+|++.+.|+|+...-++.
T Consensus 788 ~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~dfd~~~~------ 861 (1110)
T TIGR02562 788 HLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHDYDWAIA------ 861 (1110)
T ss_pred eEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecccCCeeee------
Confidence 378899999998888888664 11 4678999999999999998765554
Q ss_pred CccCCHHHHHHHhhccCCCCCCCCCc
Q psy15878 295 RDFISLNMYKQMVGRAGRTGLQESGE 320 (693)
Q Consensus 295 ~~~~s~~~~~Qr~GRaGR~g~d~~G~ 320 (693)
++-+....+|++||+.|.|....+.
T Consensus 862 -~~~~~~sliQ~aGR~~R~~~~~~~~ 886 (1110)
T TIGR02562 862 -DPSSMRSIIQLAGRVNRHRLEKVQQ 886 (1110)
T ss_pred -ccCcHHHHHHHhhcccccccCCCCC
Confidence 3558899999999999998655443
No 135
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=1e-07 Score=108.06 Aligned_cols=106 Identities=23% Similarity=0.245 Sum_probs=77.0
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.||||.|.|....+.++..|.+.+.. ...+++.-...|-..|
T Consensus 425 ~gqPVLVgT~SIe~SE~ls~~L~~~gi~------------------------------------h~vLNAk~~e~EA~II 468 (925)
T PRK12903 425 KGQPILIGTAQVEDSETLHELLLEANIP------------------------------------HTVLNAKQNAREAEII 468 (925)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCC------------------------------------ceeecccchhhHHHHH
Confidence 8999999999999999999999885443 3345554333333333
Q ss_pred HHHHhCC-CCeEEEecchhhcccCCCCcE--------EEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAG-TLQIICCTSTLAAGVNLPAQR--------VIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g-~i~VLvaT~~l~~Gvnlp~~~--------vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
- ..| .-.|.|||+.+.+|.||.--. +||-.. .+-|..-=.|..|||||.| ++|.+-.+.+-.
T Consensus 469 a---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTe----rheSrRIDnQLrGRaGRQG--DpGss~f~lSLe 539 (925)
T PRK12903 469 A---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTD----KAESRRIDNQLRGRSGRQG--DVGESRFFISLD 539 (925)
T ss_pred H---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecc----cCchHHHHHHHhcccccCC--CCCcceEEEecc
Confidence 3 344 347999999999999987432 555432 2456666679999999999 789888777654
No 136
>KOG0385|consensus
Probab=98.81 E-value=1.4e-07 Score=103.64 Aligned_cols=83 Identities=20% Similarity=0.122 Sum_probs=68.6
Q ss_pred eEEEcCCCCHHHHHHHHHHHhCC---CCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCC
Q psy15878 242 VAYHHADLTAGERRLIEEAYLAG---TLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQES 318 (693)
Q Consensus 242 v~~~h~~l~~~eR~~ve~~f~~g---~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~ 318 (693)
..-+.|+++.++|....+.|... ..-.|++|.....|||+-+.++||.++. ..++..=+|-.-||-|-|+..+
T Consensus 514 ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDS----DWNPQ~DLQAmDRaHRIGQ~K~ 589 (971)
T KOG0385|consen 514 YCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDS----DWNPQVDLQAMDRAHRIGQKKP 589 (971)
T ss_pred eEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecC----CCCchhhhHHHHHHHhhCCcCc
Confidence 56678999999999999999853 3457889999999999999999999875 3355556677777888887778
Q ss_pred CcEEEEeccc
Q psy15878 319 GESIMLCKTM 328 (693)
Q Consensus 319 G~~i~l~~~~ 328 (693)
-.+|.+++.+
T Consensus 590 V~V~RLiten 599 (971)
T KOG0385|consen 590 VVVYRLITEN 599 (971)
T ss_pred eEEEEEeccc
Confidence 8999999877
No 137
>PRK08609 hypothetical protein; Provisional
Probab=98.74 E-value=1.6e-08 Score=114.21 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=80.6
Q ss_pred ccCccchhhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH-------hhhhhhhhh
Q psy15878 599 YCRAPNLRALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK-------LHFITKMDK 670 (693)
Q Consensus 599 ~g~~~el~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~-------~~~~~~~~~ 670 (693)
.-+|+.+.+|++||||||++|++||+. ||+|+++|..|..+.....++|||.|++++|+++.+ ++.. .+
T Consensus 81 ~~~p~~~~~l~~i~GiGpk~a~~l~~~lGi~tl~~L~~a~~~~~~~~~~gfg~k~~~~il~~i~~~~~~~~R~~~---~~ 157 (570)
T PRK08609 81 KEVPEGLLPLLKLPGLGGKKIAKLYKELGVVDKESLKEACENGKVQALAGFGKKTEEKILEAVKELGKRPERLPI---AQ 157 (570)
T ss_pred hhCcHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHhCChhhccCcchhHHHHHHHHHHHHhcccccEEH---HH
Confidence 348899999999999999999999976 999999999999888888899999999999999984 4556 89
Q ss_pred HHHHHHHHHHHHhcCccccc
Q psy15878 671 VEAMKNLIQNLQKNYDNIVH 690 (693)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~ 690 (693)
|+++++.+.+.++++|++.+
T Consensus 158 a~~~a~~i~~~l~~~~~~~~ 177 (570)
T PRK08609 158 VLPIAQEIEEYLATIDEIIR 177 (570)
T ss_pred HHHHHHHHHHHHHhCCCccE
Confidence 99999999999999998764
No 138
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=98.56 E-value=7.2e-08 Score=92.91 Aligned_cols=55 Identities=25% Similarity=0.352 Sum_probs=52.2
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
-+|.+|||||++++++|+++||.|+++|+.|++++|.+ ++|+|.+.|++|++.++
T Consensus 3 ~~L~~IpGIG~krakkLl~~GF~Sve~Ik~AS~eEL~~-V~GIg~k~AekI~e~l~ 57 (232)
T PRK12766 3 EELEDISGVGPSKAEALREAGFESVEDVRAADQSELAE-VDGIGNALAARIKADVG 57 (232)
T ss_pred cccccCCCcCHHHHHHHHHcCCCCHHHHHhCCHHHHHH-ccCCCHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999998 77999999999999986
No 139
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.55 E-value=1.6e-06 Score=98.64 Aligned_cols=220 Identities=19% Similarity=0.199 Sum_probs=133.4
Q ss_pred ChhhHHHHHHHHhhhhC-cEEEE-eeccCCCCCccc--cc--cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecc
Q psy15878 1 MVHEKYQSLAKAAEEFK-FYLEE-YAGVKGQYPPTK--RQ--LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEF 74 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~-~~v~~-~~G~~~~~~~~~--~~--~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~ 74 (693)
||.|.++.+++++...+ ..+.. |||......... .. -++.||+|+|..-+..-...+ .. -++++|++|.+
T Consensus 137 Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L---~~-~kFdfifVDDV 212 (1187)
T COG1110 137 LVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL---SK-LKFDFIFVDDV 212 (1187)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh---cc-cCCCEEEEccH
Confidence 68899999999987766 44333 666543222111 11 157999999987532222221 11 47899999999
Q ss_pred cccCCCCChH----------------HHHH--HHHHHh---------------------ccCCCceEEEEcCcCCC----
Q psy15878 75 HMLNEPQRGP----------------ILEC--VVSKVL---------------------YLKKSIQIFAMSATIGN---- 111 (693)
Q Consensus 75 H~l~d~~rg~----------------~le~--il~~l~---------------------~~~~~~qii~lSATl~n---- 111 (693)
+-+.-.++.. .++. +-.++. ...+.-++|..|||...
T Consensus 213 DA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R 292 (1187)
T COG1110 213 DAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSR 292 (1187)
T ss_pred HHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCch
Confidence 9665322111 1111 111111 00124689999999753
Q ss_pred HHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHh-cCCceEEEeCC--
Q psy15878 112 INALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSS-- 188 (693)
Q Consensus 112 ~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~s-- 188 (693)
..-+.+.||-+. ......++..+. . |... .....+.+++. -|...|||++.
T Consensus 293 ~~LfReLlgFev---G~~~~~LRNIvD----~------------------y~~~-~~~e~~~elvk~lG~GgLIfV~~d~ 346 (1187)
T COG1110 293 LKLFRELLGFEV---GSGGEGLRNIVD----I------------------YVES-ESLEKVVELVKKLGDGGLIFVPIDY 346 (1187)
T ss_pred HHHHHHHhCCcc---Cccchhhhheee----e------------------eccC-ccHHHHHHHHHHhCCCeEEEEEcHH
Confidence 333445554321 111111111110 0 1111 33455667777 56688999999
Q ss_pred -hHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCe
Q psy15878 189 -KIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQ 267 (693)
Q Consensus 189 -r~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~ 267 (693)
+..++.+++.|...|+. +...|++ .+..++.|..|+++
T Consensus 347 G~e~aeel~e~Lr~~Gi~------------------------------------a~~~~a~-----~~~~le~F~~Geid 385 (1187)
T COG1110 347 GREKAEELAEYLRSHGIN------------------------------------AELIHAE-----KEEALEDFEEGEVD 385 (1187)
T ss_pred hHHHHHHHHHHHHhcCce------------------------------------EEEeecc-----chhhhhhhccCcee
Confidence 89999999999885443 6677773 37788999999999
Q ss_pred EEEec----chhhcccCCCC-cEEEEecC
Q psy15878 268 IICCT----STLAAGVNLPA-QRVIIRDS 291 (693)
Q Consensus 268 VLvaT----~~l~~Gvnlp~-~~vVI~~~ 291 (693)
|||.. .++-+|+|+|. ++++|.++
T Consensus 386 vLVGvAsyYG~lVRGlDLP~rirYaIF~G 414 (1187)
T COG1110 386 VLVGVASYYGVLVRGLDLPHRIRYAVFYG 414 (1187)
T ss_pred EEEEecccccceeecCCchhheeEEEEec
Confidence 99976 48999999997 77887753
No 140
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.50 E-value=3.1e-06 Score=101.01 Aligned_cols=135 Identities=17% Similarity=0.240 Sum_probs=88.6
Q ss_pred HHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCC
Q psy15878 172 VLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLT 250 (693)
Q Consensus 172 l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~ 250 (693)
+.+++. .++++|||++|.+..+.++..|...... .++..+..+..
T Consensus 666 i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~----------------------------------~~~~~l~q~~~ 711 (850)
T TIGR01407 666 IIEITAITSPKILVLFTSYEMLHMVYDMLNELPEF----------------------------------EGYEVLAQGIN 711 (850)
T ss_pred HHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccc----------------------------------cCceEEecCCC
Confidence 334444 6789999999999999999988651100 12333333433
Q ss_pred HHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcE---EEEec-CcC-----------------CCcc-------CCHHH
Q psy15878 251 AGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQR---VIIRD-SYV-----------------GRDF-------ISLNM 302 (693)
Q Consensus 251 ~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~---vVI~~-~~~-----------------g~~~-------~s~~~ 302 (693)
..|..+.+.|++|...||+||+.+.+|||+|+.. |||.. |+. |..| .....
T Consensus 712 -~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~ 790 (850)
T TIGR01407 712 -GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIR 790 (850)
T ss_pred -ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHH
Confidence 5788899999999999999999999999999854 33332 221 1111 13356
Q ss_pred HHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCC
Q psy15878 303 YKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPE 343 (693)
Q Consensus 303 ~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~ 343 (693)
+.|.+||.=|...| .|.++++-..- ....|.+.+-...+
T Consensus 791 l~Qa~GRlIRs~~D-~G~v~ilD~R~-~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 791 LRQALGRLIRREND-RGSIVILDRRL-VGKRYGKRFEKSLP 829 (850)
T ss_pred HHHhhccccccCCc-eEEEEEEcccc-ccchHHHHHHHhCC
Confidence 79999999999855 67655553332 33345444444443
No 141
>KOG0387|consensus
Probab=98.35 E-value=1.5e-05 Score=88.71 Aligned_cols=118 Identities=21% Similarity=0.168 Sum_probs=87.4
Q ss_pred hhHHHHHh----cCCceEEEeCChHHHHHHHHHhhh-ccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEE
Q psy15878 170 DAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQF-DRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAY 244 (693)
Q Consensus 170 ~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~ 244 (693)
..+..++. .+.++|+|..|+....-+-..|.. .+ +...-
T Consensus 533 ~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~------------------------------------ysylR 576 (923)
T KOG0387|consen 533 KVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKG------------------------------------YSYLR 576 (923)
T ss_pred HHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCC------------------------------------ceEEE
Confidence 44555555 788999999999888777666653 11 12555
Q ss_pred EcCCCCHHHHHHHHHHHhCCCC--eEEEecchhhcccCCCC-cEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcE
Q psy15878 245 HHADLTAGERRLIEEAYLAGTL--QIICCTSTLAAGVNLPA-QRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGES 321 (693)
Q Consensus 245 ~h~~l~~~eR~~ve~~f~~g~i--~VLvaT~~l~~Gvnlp~-~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~ 321 (693)
..|..+...|..+.+.|.++.. -.|++|.+..-|+|+-. -+|||.+| ..+++.=.|-.-||-|-|+...-.+
T Consensus 577 mDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDP-----dWNPStD~QAreRawRiGQkkdV~V 651 (923)
T KOG0387|consen 577 MDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDP-----DWNPSTDNQARERAWRIGQKKDVVV 651 (923)
T ss_pred ecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECC-----CCCCccchHHHHHHHhhcCccceEE
Confidence 6788999999999999997654 35779999999999986 45555543 3466667788888888887667777
Q ss_pred EEEeccc
Q psy15878 322 IMLCKTM 328 (693)
Q Consensus 322 i~l~~~~ 328 (693)
|.+.+..
T Consensus 652 YRL~t~g 658 (923)
T KOG0387|consen 652 YRLMTAG 658 (923)
T ss_pred EEEecCC
Confidence 7787766
No 142
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]
Probab=98.34 E-value=8.3e-07 Score=89.28 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=82.8
Q ss_pred HHhhccCccchhhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH-------Hhhhhh
Q psy15878 595 QTLMYCRAPNLRALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLISAA-------KLHFIT 666 (693)
Q Consensus 595 ~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a-------~~~~~~ 666 (693)
..+.-++|.++.+|+.+||+||+....||+. ||+++++|.+|.......-++|||++.+.+|+++. +++.+
T Consensus 82 e~lk~~~P~gl~~Ll~v~GlGpkKi~~Ly~elgi~~~e~l~~a~~~~~~~~l~GfG~kse~~il~~i~~~~~~~~R~~l- 160 (326)
T COG1796 82 EALKKEVPEGLEPLLKVPGLGPKKIVSLYKELGIKDLEELQEALENGKIRGLRGFGKKSEAKILENIEFAEESPERIPL- 160 (326)
T ss_pred HHHHHhCCcchHHHhhCCCCCcHHHHHHHHHHCcccHHHHHHHHHhCCccccCCccchhHHHHHHHHHHHhhhhhhcch-
Confidence 4466789999999999999999999999999 99999999999999999999999999999999988 44555
Q ss_pred hhhhHHHHHHHHHHHHhcCcccc
Q psy15878 667 KMDKVEAMKNLIQNLQKNYDNIV 689 (693)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~ 689 (693)
..+..++++++.++.++.++.
T Consensus 161 --~~~l~ia~ei~~yl~~~~~~~ 181 (326)
T COG1796 161 --SFTLPIAQEIEGYLEELTPII 181 (326)
T ss_pred --HHHHHHHHHHHHHHHhccchh
Confidence 899999999999998887753
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.33 E-value=1.5e-05 Score=91.38 Aligned_cols=75 Identities=11% Similarity=0.019 Sum_probs=51.0
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchH--HHHhchh---ccCCCCcccEEEEeccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGS--KLIGSLI---QENRIDEIGLIVIDEFH 75 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~--~Ll~~l~---~~~~l~~i~lvVvDE~H 75 (693)
||..-.+|+.++.+.+|+.|+...+++....... .=.+||+.+|..-+. .|-+.+. .....+.+.+.||||++
T Consensus 129 LA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 129 LAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred HHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 5677788999999999999999877654322121 235899999987543 2333322 11133678899999999
Q ss_pred cc
Q psy15878 76 ML 77 (693)
Q Consensus 76 ~l 77 (693)
.+
T Consensus 207 Si 208 (870)
T CHL00122 207 SI 208 (870)
T ss_pred hh
Confidence 44
No 144
>KOG0384|consensus
Probab=98.32 E-value=1.3e-05 Score=92.80 Aligned_cols=161 Identities=18% Similarity=0.157 Sum_probs=113.2
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.|++||||..-.+.-.-++++|...++. ..-+-|++..+.|+..
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~yp------------------------------------fQRLDGsvrgelRq~A 741 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYP------------------------------------FQRLDGSVRGELRQQA 741 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCc------------------------------------ceeccCCcchHHHHHH
Confidence 6799999999999999999999875554 4557789999999999
Q ss_pred HHHHhC---CCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEecccc-cHHH
Q psy15878 258 EEAYLA---GTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQ-DFLR 333 (693)
Q Consensus 258 e~~f~~---g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~-~~~~ 333 (693)
++-|.. .....|.||-....|||+-+.+-||.++. ..++..=+|-.-||-|-|+...-.+|.+++... +.+.
T Consensus 742 IDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDS----DWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEi 817 (1373)
T KOG0384|consen 742 IDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDS----DWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEI 817 (1373)
T ss_pred HHhccCCCCCceEEEEecccCcccccccccceEEEeCC----CCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHH
Confidence 999984 45678999999999999987554444442 346667778888999999877888999988762 2222
Q ss_pred HHHHHhCCCCcccccCCchhHHHHHHHHHHh------cccCCHHHHHHHHHHhhhhhccCch
Q psy15878 334 FSSMMNAGPEPISSHMDPPTLVDLILEVVAA------NLCSSLEDVKTLIKHTLFYQLKSPE 389 (693)
Q Consensus 334 ~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~------~~~~~~~~~~~~l~~t~~~~~~~p~ 389 (693)
+++ ..-.| .|..++++.... +...+.+++.+.|+.--+...+..+
T Consensus 818 lER--------Ak~Km---vLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~e 868 (1373)
T KOG0384|consen 818 LER--------AKLKM---VLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEE 868 (1373)
T ss_pred HHH--------HHHHh---hhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhccc
Confidence 222 11111 456666665553 2345677777777644333333333
No 145
>KOG0389|consensus
Probab=98.22 E-value=1.6e-05 Score=88.29 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=72.1
Q ss_pred hceEEEcCCCCHHHHHHHHHHHhCCC--CeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCC
Q psy15878 240 YGVAYHHADLTAGERRLIEEAYLAGT--LQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQE 317 (693)
Q Consensus 240 ~gv~~~h~~l~~~eR~~ve~~f~~g~--i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~ 317 (693)
.+..-+.|.....+|+.+.+.|...+ .-.|.+|.....|||+-+.++||.++.. .++-+=.|---||-|.|+..
T Consensus 802 ~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~d----FNP~dD~QAEDRcHRvGQtk 877 (941)
T KOG0389|consen 802 YKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDID----FNPYDDKQAEDRCHRVGQTK 877 (941)
T ss_pred ceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecC----CCCcccchhHHHHHhhCCcc
Confidence 44566789999999999999998643 3567899999999999999888887642 23334467777777777777
Q ss_pred CCcEEEEecccccHH-HHHHHHhCCC
Q psy15878 318 SGESIMLCKTMQDFL-RFSSMMNAGP 342 (693)
Q Consensus 318 ~G~~i~l~~~~~~~~-~~~~~l~~~~ 342 (693)
+-.++.+++.+ ..+ .+.++-+..+
T Consensus 878 pVtV~rLItk~-TIEE~I~~lA~~KL 902 (941)
T KOG0389|consen 878 PVTVYRLITKS-TIEEGILRLAKTKL 902 (941)
T ss_pred eeEEEEEEecC-cHHHHHHHHHHHhh
Confidence 88999999887 433 3344444443
No 146
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.19 E-value=6.7e-05 Score=85.99 Aligned_cols=95 Identities=14% Similarity=0.076 Sum_probs=61.3
Q ss_pred hhhHHHHHHHHhhhhC-cEEEEeeccCCCCCcccccc----CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 2 VHEKYQSLAKAAEEFK-FYLEEYAGVKGQYPPTKRQL----NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 2 ~~e~~~~l~~~~~~~~-~~v~~~~G~~~~~~~~~~~~----~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
+.|.++.|+.. +| -.|..++++.+..+....|. ++.+|+|+|- +.. .-.+.++++|||||=|.
T Consensus 201 t~q~~~rl~~~---f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR--------SAv-FaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 201 VDRLEAALRAL---LGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR--------SAV-FAPVEDLGLVAIWDDGD 268 (665)
T ss_pred HHHHHHHHHHH---cCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc--------eeE-EeccCCCCEEEEEcCCc
Confidence 44555556554 44 67888999887666655553 5689999993 321 23568999999999994
Q ss_pred cC--CC-C-ChHHHHHHHHHHhccCCCceEEEEcCcCC
Q psy15878 77 LN--EP-Q-RGPILECVVSKVLYLKKSIQIFAMSATIG 110 (693)
Q Consensus 77 l~--d~-~-rg~~le~il~~l~~~~~~~qii~lSATl~ 110 (693)
-+ +. . +...-+..+.|-+ ..++.+|+.|||++
T Consensus 269 ~sykq~~~p~yhaRdvA~~Ra~--~~~~~lvLgSaTPS 304 (665)
T PRK14873 269 DLLAEPRAPYPHAREVALLRAH--QHGCALLIGGHART 304 (665)
T ss_pred hhhcCCCCCCccHHHHHHHHHH--HcCCcEEEECCCCC
Confidence 33 11 1 2222333333332 46789999999974
No 147
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=98.16 E-value=3.5e-06 Score=87.94 Aligned_cols=80 Identities=23% Similarity=0.320 Sum_probs=68.5
Q ss_pred hhccCccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH-------hhhhhhhh
Q psy15878 597 LMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK-------LHFITKMD 669 (693)
Q Consensus 597 l~~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~-------~~~~~~~~ 669 (693)
+...+++.+.+|++||||||++|++||+.||+|++||..|. |.|+.++|+.+.+ ++.. +
T Consensus 76 l~~~~~~~l~~l~~i~GiGpk~a~~l~~lGi~sl~dL~~a~-----------g~k~~~~i~~gl~~~~~~~~ri~r---~ 141 (307)
T cd00141 76 LREDVPPGLLLLLRVPGVGPKTARKLYELGIRTLEDLRKAA-----------GAKLEQNILIGLEYYEDFQQRIPR---E 141 (307)
T ss_pred HhccchHHHHHHHcCCCCCHHHHHHHHHcCCCCHHHHHHHh-----------ccccHHHHHHHHHHHHHhcCCeEH---H
Confidence 33448999999999999999999999977999999999876 7788888888873 5555 9
Q ss_pred hHHHHHHHHHHHHhcCccccc
Q psy15878 670 KVEAMKNLIQNLQKNYDNIVH 690 (693)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~ 690 (693)
+|+++++.+.+.++.+++..+
T Consensus 142 ea~~~a~~i~~~l~~~~~~~~ 162 (307)
T cd00141 142 EALAIAEIIKEALREVDPVLQ 162 (307)
T ss_pred HHHHHHHHHHHHHHhCCCceE
Confidence 999999999999999876543
No 148
>COG4889 Predicted helicase [General function prediction only]
Probab=98.13 E-value=1.6e-06 Score=96.52 Aligned_cols=118 Identities=22% Similarity=0.212 Sum_probs=77.3
Q ss_pred CceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEc--CCCCHHHHHHH
Q psy15878 180 LMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHH--ADLTAGERRLI 257 (693)
Q Consensus 180 ~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h--~~l~~~eR~~v 257 (693)
.+++-||.+.+....+++.+.. .+ +....++.+.. ....+.+-| |.|...+|...
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~--Vv----------e~Y~~Elk~d~-----------~nL~iSi~HvDGtmNal~R~~l 517 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFET--VV----------EAYDEELKKDF-----------KNLKISIDHVDGTMNALERLDL 517 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH--HH----------HHHHHHHHhcC-----------CCceEEeecccccccHHHHHHH
Confidence 4567788888777777776654 22 01111222211 112355555 78888888544
Q ss_pred HHH---HhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCC-CCCCcEEEE
Q psy15878 258 EEA---YLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGL-QESGESIML 324 (693)
Q Consensus 258 e~~---f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~-d~~G~~i~l 324 (693)
+.. |.....+||-....|++|||+|+.+-||..+. .-|.-+.+|-+||+-|... ...|..++-
T Consensus 518 ~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~p----r~smVDIVQaVGRVMRKa~gK~yGYIILP 584 (1518)
T COG4889 518 LELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDP----RSSMVDIVQAVGRVMRKAKGKKYGYIILP 584 (1518)
T ss_pred HhccCCCCcchheeeccchhhhcCCCccccceEEEecC----chhHHHHHHHHHHHHHhCcCCccceEEEE
Confidence 443 34577899999999999999999888877652 2367799999999999542 235666653
No 149
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=98.12 E-value=2.5e-06 Score=66.72 Aligned_cols=52 Identities=25% Similarity=0.351 Sum_probs=41.4
Q ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15878 609 MDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKL 662 (693)
Q Consensus 609 ~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~ 662 (693)
+.|||||+++|+.|.+. |.|++.|..|++++|.. ++|+|+++|++|.+-.+.
T Consensus 6 LGI~~VG~~~ak~L~~~-f~sl~~l~~a~~e~L~~-i~gIG~~~A~si~~ff~~ 57 (64)
T PF12826_consen 6 LGIPGVGEKTAKLLAKH-FGSLEALMNASVEELSA-IPGIGPKIAQSIYEFFQD 57 (64)
T ss_dssp CTSTT--HHHHHHHHHC-CSCHHHHCC--HHHHCT-STT--HHHHHHHHHHHH-
T ss_pred CCCCCccHHHHHHHHHH-cCCHHHHHHcCHHHHhc-cCCcCHHHHHHHHHHHCC
Confidence 58999999999999988 88999999999999988 889999999999887643
No 150
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.11 E-value=8.9e-06 Score=74.01 Aligned_cols=102 Identities=20% Similarity=0.161 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCC
Q psy15878 2 VHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQ 81 (693)
Q Consensus 2 ~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~ 81 (693)
+.|..+.+...... +..+..+.+...............+|+++|++.+...... .......++++|+||+|.+....
T Consensus 43 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~--~~~~~~~~~~iiiDE~h~~~~~~ 119 (144)
T cd00046 43 ANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER--LKLSLKKLDLLILDEAHRLLNQG 119 (144)
T ss_pred HHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHc--CCcchhcCCEEEEeCHHHHhhcc
Confidence 34555555555443 5777777765433322222347899999999986543332 11245688999999999987654
Q ss_pred ChHHHHHHHHHHhccCCCceEEEEcCcC
Q psy15878 82 RGPILECVVSKVLYLKKSIQIFAMSATI 109 (693)
Q Consensus 82 rg~~le~il~~l~~~~~~~qii~lSATl 109 (693)
..... ...........+++++|||+
T Consensus 120 ~~~~~---~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 120 FGLLG---LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hHHHH---HHHHhhCCccceEEEEeccC
Confidence 33322 11122235678999999996
No 151
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.08 E-value=0.00017 Score=82.86 Aligned_cols=80 Identities=11% Similarity=0.058 Sum_probs=53.6
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchH--HHHhchhc---cCCCCcccEEEEeccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGS--KLIGSLIQ---ENRIDEIGLIVIDEFH 75 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~--~Ll~~l~~---~~~l~~i~lvVvDE~H 75 (693)
||..=.+|+.++.+.+|+.|+...+++.. ..++..=.+||+.+|+..+. .|-+.+.. ....+.+.+.||||++
T Consensus 138 LA~RDae~m~~vy~~LGLtvg~i~~~~~~--~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvD 215 (939)
T PRK12902 138 LARRDAEWMGQVHRFLGLSVGLIQQDMSP--EERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVD 215 (939)
T ss_pred HHHhHHHHHHHHHHHhCCeEEEECCCCCh--HHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccc
Confidence 46666788999999999999998776542 22222257999999998763 22233221 1234788999999999
Q ss_pred ccC-CCCC
Q psy15878 76 MLN-EPQR 82 (693)
Q Consensus 76 ~l~-d~~r 82 (693)
.+. |..|
T Consensus 216 SILIDEAr 223 (939)
T PRK12902 216 SILIDEAR 223 (939)
T ss_pred ceeeccCC
Confidence 543 4433
No 152
>KOG1000|consensus
Probab=98.06 E-value=5.6e-05 Score=79.90 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=83.7
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
++.+.+|||.-...-+.+...+.+.+ .|..-..|..+..+|...
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~------------------------------------vg~IRIDGst~s~~R~ll 534 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRK------------------------------------VGSIRIDGSTPSHRRTLL 534 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcC------------------------------------CCeEEecCCCCchhHHHH
Confidence 56778888888777777776666521 234556799999999999
Q ss_pred HHHHhC-CCCeE-EEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHH
Q psy15878 258 EEAYLA-GTLQI-ICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFS 335 (693)
Q Consensus 258 e~~f~~-g~i~V-LvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~ 335 (693)
-+.|.. .+++| +++-..+..|+++.+.++|+..-. +.++.-.+|---||-|-|+..+-.++.++.+..-.++.-
T Consensus 535 ~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL----~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~W 610 (689)
T KOG1000|consen 535 CQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAEL----HWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMW 610 (689)
T ss_pred HHHhccccceEEEEEEEeecccceeeeccceEEEEEe----cCCCceEEechhhhhhccccceeeEEEEEecCchHHHHH
Confidence 999995 34454 445577889999999888876532 445666777777888877655544555555541333334
Q ss_pred HHHhCCC
Q psy15878 336 SMMNAGP 342 (693)
Q Consensus 336 ~~l~~~~ 342 (693)
.++...+
T Consensus 611 p~l~~KL 617 (689)
T KOG1000|consen 611 PMLQQKL 617 (689)
T ss_pred HHHHHHH
Confidence 4444444
No 153
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.05 E-value=2e-05 Score=91.31 Aligned_cols=164 Identities=21% Similarity=0.266 Sum_probs=105.0
Q ss_pred ceEEEEcCcCCC-HHHHHHhhcCCC-ccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHH----
Q psy15878 100 IQIFAMSATIGN-INALSTFIEGIT-YVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVL---- 173 (693)
Q Consensus 100 ~qii~lSATl~n-~~~la~~l~~~~-~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---- 173 (693)
.++-|||.|... ..+|.+..+-++ ..++.+|+.... ....+|. ....+...+.
T Consensus 564 ~kLsGMTGTA~tea~Ef~~IY~L~Vv~IPTnrP~~R~D---~~D~vy~------------------t~~eK~~Aii~ei~ 622 (1112)
T PRK12901 564 HKLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKD---KEDLVYK------------------TKREKYNAVIEEIT 622 (1112)
T ss_pred chhcccCCCCHHHHHHHHHHhCCCEEECCCCCCcceec---CCCeEec------------------CHHHHHHHHHHHHH
Confidence 467899999864 556666655543 234455543221 1112221 1112233333
Q ss_pred HHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHH
Q psy15878 174 HLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGE 253 (693)
Q Consensus 174 ~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~e 253 (693)
.+...+.||||-+.|....+.++..|...+.. ..++++.....|
T Consensus 623 ~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~------------------------------------H~VLNAK~h~~E 666 (1112)
T PRK12901 623 ELSEAGRPVLVGTTSVEISELLSRMLKMRKIP------------------------------------HNVLNAKLHQKE 666 (1112)
T ss_pred HHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCc------------------------------------HHHhhccchhhH
Confidence 33338999999999999999999999885443 112333333555
Q ss_pred HHHHHHHHhCCCCeEEEecchhhcccCCCC--------cEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEe
Q psy15878 254 RRLIEEAYLAGTLQIICCTSTLAAGVNLPA--------QRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLC 325 (693)
Q Consensus 254 R~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~--------~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~ 325 (693)
-..|-++=+.| .|-|||+.+.+|-||.- =-+||-.. .+-|..--.|-.|||||.| ++|.+-.++
T Consensus 667 AeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTe----rheSrRID~QLrGRaGRQG--DPGsS~f~l 738 (1112)
T PRK12901 667 AEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTE----RHESRRVDRQLRGRAGRQG--DPGSSQFYV 738 (1112)
T ss_pred HHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEEcc----CCCcHHHHHHHhcccccCC--CCCcceEEE
Confidence 55555554444 68999999999999872 23444332 3678888899999999999 789888877
Q ss_pred ccc
Q psy15878 326 KTM 328 (693)
Q Consensus 326 ~~~ 328 (693)
+-.
T Consensus 739 SLE 741 (1112)
T PRK12901 739 SLE 741 (1112)
T ss_pred Ecc
Confidence 655
No 154
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.04 E-value=9e-05 Score=89.15 Aligned_cols=137 Identities=15% Similarity=0.229 Sum_probs=89.0
Q ss_pred HHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCC
Q psy15878 172 VLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLT 250 (693)
Q Consensus 172 l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~ 250 (693)
+.+++. .++++|||++|.+..+.++..|...... .+...+--|++
T Consensus 744 i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~----------------------------------~~~~ll~Qg~~ 789 (928)
T PRK08074 744 IAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEEL----------------------------------EGYVLLAQGVS 789 (928)
T ss_pred HHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccc----------------------------------cCceEEecCCC
Confidence 334443 6789999999999999999988751100 11222222444
Q ss_pred HHHHHHHHHHHhCCCCeEEEecchhhcccCCCCc--E-EEEec-CcC-----------------CCcc-------CCHHH
Q psy15878 251 AGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQ--R-VIIRD-SYV-----------------GRDF-------ISLNM 302 (693)
Q Consensus 251 ~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~--~-vVI~~-~~~-----------------g~~~-------~s~~~ 302 (693)
...|..+.+.|+++.-.||++|..+.+|||+|+. + |||.. |+. |..| .-...
T Consensus 790 ~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~ 869 (928)
T PRK08074 790 SGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLR 869 (928)
T ss_pred CCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHH
Confidence 4567889999999888999999999999999983 3 44442 321 2122 12456
Q ss_pred HHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCc
Q psy15878 303 YKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEP 344 (693)
Q Consensus 303 ~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~ 344 (693)
+.|-+||.=|...| .|.++++-..- ....|.+.+-...|+
T Consensus 870 lkQg~GRlIRs~~D-~G~v~ilD~R~-~~k~Yg~~~l~sLP~ 909 (928)
T PRK08074 870 FKQGFGRLIRTETD-RGTVFVLDRRL-TTTSYGKYFLESLPT 909 (928)
T ss_pred HHhhhhhhcccCCc-eEEEEEecCcc-ccchHHHHHHHhCCC
Confidence 79999999999865 67555443333 334454444444443
No 155
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.02 E-value=1.4e-05 Score=77.59 Aligned_cols=109 Identities=21% Similarity=0.245 Sum_probs=67.5
Q ss_pred hhHHHHHHHHhhhhC-cEEEEeeccCCCCCccccccCCC-cEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 3 HEKYQSLAKAAEEFK-FYLEEYAGVKGQYPPTKRQLNKK-SIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 3 ~e~~~~l~~~~~~~~-~~v~~~~G~~~~~~~~~~~~~~~-~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
.|.+..+........ .....+.+.. ............ +|+++|++.+...+... ......++++|+||+|++...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~--~~~~~~~~~iIiDE~h~~~~~ 144 (201)
T smart00487 68 EQWAEELKKLGPSLGLKVVGLYGGDS-KREQLRKLESGKTDILVTTPGRLLDLLEND--LLELSNVDLVILDEAHRLLDG 144 (201)
T ss_pred HHHHHHHHHHhccCCeEEEEEeCCcc-hHHHHHHHhcCCCCEEEeChHHHHHHHHcC--CcCHhHCCEEEEECHHHHhcC
Confidence 344445555443333 3444444432 112222222344 99999999876555442 134578899999999999865
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST 117 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~ 117 (693)
.+...+..++..+ .+..+++++|||+++ .+....
T Consensus 145 ~~~~~~~~~~~~~---~~~~~~v~~saT~~~~~~~~~~ 179 (201)
T smart00487 145 GFGDQLEKLLKLL---PKNVQLLLLSATPPEEIENLLE 179 (201)
T ss_pred CcHHHHHHHHHhC---CccceEEEEecCCchhHHHHHH
Confidence 6677777766654 467899999999975 344433
No 156
>COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair]
Probab=98.01 E-value=1e-05 Score=79.80 Aligned_cols=191 Identities=16% Similarity=0.165 Sum_probs=113.7
Q ss_pred hhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHc--CCChhHHHHHHHhhhhhhccccccccccEEEeeccCCcc
Q psy15878 396 ETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQA--GLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYR 473 (693)
Q Consensus 396 ~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~--~l~~~~~~~~~~~l~~~~~~~~l~~~l~ll~l~~~~~~~ 473 (693)
.++.-..+.+.|...|+-.. ....+.|.++..- .+.-.++..|+.+|.+.+ +.++.+.|.-..+.+
T Consensus 34 ~RE~rs~v~~~L~~~gv~v~------~~~LevGDYvvs~~v~VERKs~~Dfv~Si~dgR----lfeQ~~rL~~~y~rp-- 101 (254)
T COG1948 34 SRELRSEVPRLLKRLGVKVE------VRTLEVGDYVVSDDVIVERKSISDFVSSIIDGR----LFEQAKRLKKSYERP-- 101 (254)
T ss_pred cchhcccchHHHHhCCCeEE------EEecccccEEeecCeeEEeccHHHHHHHHhcch----HHHHHHHHHhcCCcc--
Confidence 34444556777888777553 3344555554443 334458888998888774 444444443333332
Q ss_pred CCCCCccccccchh-hHhhh--cChhHHHHHHHcCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy15878 474 IPSDGILLSRSKVY-DRYTK--FHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAK 550 (693)
Q Consensus 474 ~~~~~~~~~~~~~~-~~~~~--l~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i~e~~~~~i~~ 550 (693)
....+.+ .++.. .++ +++++| +..++.
T Consensus 102 -------vliVegd~~~~~~~~i~~--------------------------------~av~~a-----------l~s~~v 131 (254)
T COG1948 102 -------VLIVEGDDSFSRRPKIHP--------------------------------NAVRGA-----------LASLAV 131 (254)
T ss_pred -------EEEEEcccccccccccCH--------------------------------HHHHHH-----------HHHHHh
Confidence 1111111 11110 111 266777 445566
Q ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHhhhCcc-----h-hhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHH
Q psy15878 551 MYGIQNSHLQNFLNVTSYFASKVYRFCEELPE-----L-WCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLN 624 (693)
Q Consensus 551 ~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~ 624 (693)
.||++.-+.. ++..+|..+..++++.+. + .........+..+ .+.-|..+||||+..|+.|++
T Consensus 132 dfg~~vi~t~----~~~~Ta~~i~~la~req~e~~r~v~~~~~~~~~t~~e~-------q~~il~s~pgig~~~a~~ll~ 200 (254)
T COG1948 132 DFGLPVIWTR----SPEETAELIHELARREQEERKRSVNPHGKKKAKTLKEL-------QLYILESIPGIGPKLAERLLK 200 (254)
T ss_pred hcCceEEEeC----CHHHHHHHHHHHHHHHHHhccccccccccccccchHHH-------HHHHHHcCCCccHHHHHHHHH
Confidence 6998866666 444455556555555541 0 0011111111111 123356999999999999999
Q ss_pred cCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 625 AGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 625 ~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
. |.|++++.+|+.++|.. ++|+|++.|..|.+-.+
T Consensus 201 ~-fgS~~~~~tas~~eL~~-v~gig~k~A~~I~~~~~ 235 (254)
T COG1948 201 K-FGSVEDVLTASEEELMK-VKGIGEKKAREIYRFLR 235 (254)
T ss_pred H-hcCHHHHhhcCHHHHHH-hcCccHHHHHHHHHHHh
Confidence 9 99999999999999998 67999999999976553
No 157
>KOG0390|consensus
Probab=98.00 E-value=0.0004 Score=79.25 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=68.8
Q ss_pred hhceEEEcCCCCHHHHHHHHHHHhC--CCCe-EEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCC
Q psy15878 239 LYGVAYHHADLTAGERRLIEEAYLA--GTLQ-IICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGL 315 (693)
Q Consensus 239 ~~gv~~~h~~l~~~eR~~ve~~f~~--g~i~-VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~ 315 (693)
.+.+..+||.++..+|+.+.+.|.+ +..+ .|.+|...+.|+|+=+.+-||..+. ..+++.=.|-++||-|.|+
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~----dWNPa~d~QAmaR~~RdGQ 694 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDP----DWNPAVDQQAMARAWRDGQ 694 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCC----CCCchhHHHHHHHhccCCC
Confidence 3457889999999999999999986 3324 4557788899999877655555542 5789999999999999998
Q ss_pred CCCCcEEEEeccc
Q psy15878 316 QESGESIMLCKTM 328 (693)
Q Consensus 316 d~~G~~i~l~~~~ 328 (693)
..+-.+|.+....
T Consensus 695 Kk~v~iYrLlatG 707 (776)
T KOG0390|consen 695 KKPVYIYRLLATG 707 (776)
T ss_pred cceEEEEEeecCC
Confidence 8888888887655
No 158
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.93 E-value=5.9e-05 Score=88.04 Aligned_cols=125 Identities=21% Similarity=0.206 Sum_probs=81.1
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.++.+|||++|.+..+.+++.+...... -....++.-+ +...
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~-----------------------------------~~v~~q~~~~---~~~~ 519 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERST-----------------------------------LPVLTQGEDE---REEL 519 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCcc-----------------------------------ceeeecCCCc---HHHH
Confidence 6669999999999999999998861110 0223444433 4467
Q ss_pred HHHHhCCCC-eEEEecchhhcccCCCCc---EEEEec-CcC-----------------CC-------ccCCHHHHHHHhh
Q psy15878 258 EEAYLAGTL-QIICCTSTLAAGVNLPAQ---RVIIRD-SYV-----------------GR-------DFISLNMYKQMVG 308 (693)
Q Consensus 258 e~~f~~g~i-~VLvaT~~l~~Gvnlp~~---~vVI~~-~~~-----------------g~-------~~~s~~~~~Qr~G 308 (693)
.+.|+.+.- -++|+|..+.+|||+|+. .|||.. |++ |. .|.......|-+|
T Consensus 520 l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavG 599 (654)
T COG1199 520 LEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVG 599 (654)
T ss_pred HHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhc
Confidence 777776544 899999999999999984 345542 221 11 1234567899999
Q ss_pred ccCCCCCCCCCcEEEEecccccHHHHHHHHhCCC
Q psy15878 309 RAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGP 342 (693)
Q Consensus 309 RaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~ 342 (693)
|+=|... +.|.++++-..- ....+.+.+....
T Consensus 600 RlIR~~~-D~G~ivllD~R~-~~~~y~~~l~~~l 631 (654)
T COG1199 600 RLIRSED-DRGVIVLLDKRY-ATKRYGKLLLDSL 631 (654)
T ss_pred cccccCC-CceEEEEecccc-hhhhHHHHHHHhC
Confidence 9999763 478766654443 3333544444333
No 159
>KOG0392|consensus
Probab=97.88 E-value=0.00036 Score=81.16 Aligned_cols=111 Identities=20% Similarity=0.189 Sum_probs=83.1
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceE--EEcCCCCHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVA--YHHADLTAGERRL 256 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~--~~h~~l~~~eR~~ 256 (693)
++++||||.-+.....+-+.|.+. ++ ..|. -+.|+.++.+|.+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~-~m----------------------------------psVtymRLDGSVpp~~R~k 1384 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKK-YM----------------------------------PSVTYMRLDGSVPPGDRQK 1384 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhh-hc----------------------------------CceeEEEecCCCCcHHHHH
Confidence 356777777777776666665541 11 1244 5679999999999
Q ss_pred HHHHHhCC-CCeEEE-ecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 257 IEEAYLAG-TLQIIC-CTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 257 ve~~f~~g-~i~VLv-aT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
+.+.|.++ .++||+ +|-+..-|+|+-+.+-||.... ..++..=+|-+-||-|-|+.+.-.+|.+++..
T Consensus 1385 iV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEH----DWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1385 IVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEH----DWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred HHHHhcCCCceeEEEEeeeccccccccCCCceEEEEec----CCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 99999998 888876 6789999999998776665432 22444558999999999988778888888877
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.84 E-value=0.00034 Score=79.67 Aligned_cols=106 Identities=12% Similarity=0.042 Sum_probs=73.8
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.|+.+-||++|...++.+++.... .. ..|..++|.-+.. .+
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~--~~----------------------------------~~Vl~l~s~~~~~---dv 321 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCAR--FT----------------------------------KKVLVLNSTDKLE---DV 321 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHh--cC----------------------------------CeEEEEcCCCCcc---cc
Confidence 888999999999999888887665 11 2377777765544 33
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCCcE--EEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPAQR--VIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~~~--vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
++ =++.+|++=|++...|+++.... -+.-+-..+..-.+..+..||+||+-... ..+.++.++..
T Consensus 322 ~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~---~~ei~v~~d~~ 388 (824)
T PF02399_consen 322 ES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL---DNEIYVYIDAS 388 (824)
T ss_pred cc---ccceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc---cCeEEEEEecc
Confidence 32 35689999999999999997532 22222111111246777999999998877 67788877665
No 161
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.79 E-value=0.00079 Score=79.75 Aligned_cols=122 Identities=17% Similarity=0.189 Sum_probs=79.9
Q ss_pred hcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcC-CCCHHHHH
Q psy15878 177 QGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHA-DLTAGERR 255 (693)
Q Consensus 177 ~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~-~l~~~eR~ 255 (693)
..++++||+++|.+..+.++..|.... ..+ +..| +.+ |.
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~------------------------------------~~~-l~Qg~~~~---~~ 684 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQ------------------------------------VSH-LAQEKNGT---AY 684 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcC------------------------------------CcE-EEeCCCcc---HH
Confidence 367899999999999999988876410 012 2323 222 45
Q ss_pred HHHHHHhCCCCeEEEecchhhcccCCCC---cEEEEec-CcC-----------------CCcc-------CCHHHHHHHh
Q psy15878 256 LIEEAYLAGTLQIICCTSTLAAGVNLPA---QRVIIRD-SYV-----------------GRDF-------ISLNMYKQMV 307 (693)
Q Consensus 256 ~ve~~f~~g~i~VLvaT~~l~~Gvnlp~---~~vVI~~-~~~-----------------g~~~-------~s~~~~~Qr~ 307 (693)
.+.+.|+++.-.||++|..+.+|||+|. ..+||.. |+. |..| .-...+.|-+
T Consensus 685 ~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~ 764 (820)
T PRK07246 685 NIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAI 764 (820)
T ss_pred HHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHh
Confidence 6788899998899999999999999973 3445542 321 2122 1245689999
Q ss_pred hccCCCCCCCCCcEEEEecccccHHHH-HHHHhC
Q psy15878 308 GRAGRTGLQESGESIMLCKTMQDFLRF-SSMMNA 340 (693)
Q Consensus 308 GRaGR~g~d~~G~~i~l~~~~~~~~~~-~~~l~~ 340 (693)
||.=|...| .|.++++=..- ....| +.++.+
T Consensus 765 GRLIRs~~D-~Gvv~ilD~R~-~~k~Yg~~~l~s 796 (820)
T PRK07246 765 GRTMRREDQ-KSAVLILDRRI-LTKSYGKQILAS 796 (820)
T ss_pred cccccCCCC-cEEEEEECCcc-cccHHHHHHHHh
Confidence 999998854 78655443332 33334 444443
No 162
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.78 E-value=0.00016 Score=68.67 Aligned_cols=128 Identities=23% Similarity=0.259 Sum_probs=77.0
Q ss_pred HHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCH
Q psy15878 173 LHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTA 251 (693)
Q Consensus 173 ~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~ 251 (693)
.++++ .++.+|||++|.+..+.+...+..... ..++..+.. ..
T Consensus 2 ~~l~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~----------------------------------~~~~~v~~q--~~ 45 (167)
T PF13307_consen 2 LELISAVPGGVLVFFPSYRRLEKVYERLKERLE----------------------------------EKGIPVFVQ--GS 45 (167)
T ss_dssp HHHHHCCSSEEEEEESSHHHHHHHHTT-TSS-E-----------------------------------ETSCEEES--TC
T ss_pred hHHHhcCCCCEEEEeCCHHHHHHHHHHHHhhcc----------------------------------cccceeeec--Cc
Confidence 34555 568999999999999999988776110 012233333 35
Q ss_pred HHHHHHHHHHhCCCCeEEEecc--hhhcccCCCC--cE-EEEec-CcCCC-c-----------------------cCCHH
Q psy15878 252 GERRLIEEAYLAGTLQIICCTS--TLAAGVNLPA--QR-VIIRD-SYVGR-D-----------------------FISLN 301 (693)
Q Consensus 252 ~eR~~ve~~f~~g~i~VLvaT~--~l~~Gvnlp~--~~-vVI~~-~~~g~-~-----------------------~~s~~ 301 (693)
.++..+.+.|+++.-.||+|+. .+.+|||+|+ .+ |||.. |++.. + |.-..
T Consensus 46 ~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 125 (167)
T PF13307_consen 46 KSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIR 125 (167)
T ss_dssp CHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHH
T ss_pred chHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHH
Confidence 6788899999999999999998 9999999996 43 44442 22110 0 11223
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHH
Q psy15878 302 MYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMM 338 (693)
Q Consensus 302 ~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l 338 (693)
...|-+||+=|...| .|.++++-..- ....+.+.+
T Consensus 126 ~l~Qa~GR~iR~~~D-~g~i~llD~R~-~~~~y~~~l 160 (167)
T PF13307_consen 126 KLKQAIGRLIRSEDD-YGVIILLDSRF-LSKRYGKYL 160 (167)
T ss_dssp HHHHHHHCC--STT--EEEEEEESGGG-GGHHHHHH-
T ss_pred HHhhhcCcceeccCC-cEEEEEEcCcc-ccchhhhcC
Confidence 558999999999854 66555443333 333444443
No 163
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.76 E-value=6.3e-05 Score=79.42 Aligned_cols=70 Identities=30% Similarity=0.375 Sum_probs=60.1
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhh-hhhhHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFIT-KMDKVEAMKN 676 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~-~~~~~~~~~~ 676 (693)
++|.++||||+++|.+|.++||.|+++|+.+++++|.++. |++++.|.+|++.|+..+.. .+.++.++.+
T Consensus 6 ~~l~~l~gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~-g~~~~~a~~l~~~a~~~~~~~~~~t~~~l~~ 76 (317)
T PRK04301 6 KDLEDLPGVGPATAEKLREAGYDTVEAIAVASPKELSEAA-GIGESTAAKIIEAAREAADIGGFETALEVLE 76 (317)
T ss_pred ccHhhcCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhc-CCCHHHHHHHHHHHHHhhccccCccHHHHHH
Confidence 6788999999999999999999999999999999999955 99999999999999875543 3556655543
No 164
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=97.70 E-value=7.8e-05 Score=78.82 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=63.9
Q ss_pred HHHhhccCccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH-------Hhhhhh
Q psy15878 594 PQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA-------KLHFIT 666 (693)
Q Consensus 594 ~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a-------~~~~~~ 666 (693)
...+..-+++.+.+|++||||||++|++||+.||+|+++|.+|..+.+. .++ +.+. .++..
T Consensus 77 ~e~l~~~~p~~l~~l~~i~GiGpk~a~~l~~lGi~tl~eL~~a~~~~l~---------~~q--~~gl~~~~~~~~ri~r- 144 (334)
T smart00483 77 LEILNDEVYKSLKLFTNVFGVGPKTAAKWYRKGIRTLEELKKNKELKLT---------KQQ--KAGLKYYEDILKKVSR- 144 (334)
T ss_pred HHHhcCcHHHHHHHHHccCCcCHHHHHHHHHhCCCCHHHHHhcccccCC---------HHH--HHHHHHHHHHhCCCCH-
Confidence 3445556788999999999999999999999999999999988764321 122 2222 45566
Q ss_pred hhhhHHHHHHHHHHHHhcCcccc
Q psy15878 667 KMDKVEAMKNLIQNLQKNYDNIV 689 (693)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~ 689 (693)
++|+++++.+.+.+++++++.
T Consensus 145 --~e~~~i~~~i~~~l~~~~~~~ 165 (334)
T smart00483 145 --AEAFAVEYIVKRAVRKILPDA 165 (334)
T ss_pred --HHHHHHHHHHHHHHHhhCCCc
Confidence 899999999999999987654
No 165
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.69 E-value=0.00035 Score=81.44 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=80.7
Q ss_pred HHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHH
Q psy15878 173 LHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAG 252 (693)
Q Consensus 173 ~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~ 252 (693)
..++..++.+|||++|.+..+.++..|... . ...+. .++. .
T Consensus 528 ~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~--~---------------------------------~~~ll-~Q~~---~ 568 (697)
T PRK11747 528 PELLEKHKGSLVLFASRRQMQKVADLLPRD--L---------------------------------RLMLL-VQGD---Q 568 (697)
T ss_pred HHHHhcCCCEEEEeCcHHHHHHHHHHHHHh--c---------------------------------CCcEE-EeCC---c
Confidence 333445556899999999999999887641 1 01132 3443 2
Q ss_pred HHHHHHHHHh----CCCCeEEEecchhhcccCCCC--cE-EEEec-CcC-----------------CCcc-------CCH
Q psy15878 253 ERRLIEEAYL----AGTLQIICCTSTLAAGVNLPA--QR-VIIRD-SYV-----------------GRDF-------ISL 300 (693)
Q Consensus 253 eR~~ve~~f~----~g~i~VLvaT~~l~~Gvnlp~--~~-vVI~~-~~~-----------------g~~~-------~s~ 300 (693)
.|..+.+.|+ .|.-.||++|..+.+|||+|+ .+ |||.. |+. |..+ .-.
T Consensus 569 ~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~ 648 (697)
T PRK11747 569 PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDAS 648 (697)
T ss_pred hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4667776676 467789999999999999997 34 44442 321 1111 123
Q ss_pred HHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCc
Q psy15878 301 NMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEP 344 (693)
Q Consensus 301 ~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~ 344 (693)
..+.|-+||.=|...| .|.++++-..- ....|.+.+-..+||
T Consensus 649 ~kl~Qg~GRlIRs~~D-~G~i~ilD~R~-~~~~Yg~~~l~sLP~ 690 (697)
T PRK11747 649 FKLIQAVGRLIRSEQD-RGRVTILDRRL-LTKRYGKRLLDALPP 690 (697)
T ss_pred HHHHHHhccccccCCc-eEEEEEEcccc-cchhHHHHHHHhCCC
Confidence 4678999999998855 78655544333 333443333334434
No 166
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=97.64 E-value=0.00013 Score=83.60 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=57.1
Q ss_pred hhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 591 TDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 591 ~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
.++..||.|-+..+ -|.|||+|++++++||++ +++++.||..+..++|.. ++|||+|++++|+++++
T Consensus 433 aq~~~~l~hf~sr~---al~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~-l~gfG~Ksa~~ll~~Ie 500 (665)
T PRK07956 433 AQLKERLIHFVSRN---AMDIDGLGEKIIEQLFEKGLIHDPADLFKLTAEDLLG-LEGFGEKSAQNLLDAIE 500 (665)
T ss_pred HHHHHHHHHhhccc---ccCCCCcCHHHHHHHHHcCCCCCHHHHHhcCHHHHhc-CcCcchHHHHHHHHHHH
Confidence 45677777766543 378999999999999999 689999999999888776 88999999999999883
No 167
>TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication. NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic.
Probab=97.62 E-value=0.00018 Score=53.29 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 614 VKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 614 i~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
|+...+..|.++||.|+++++.+++++|.. ++|++...+.+|+..|+..
T Consensus 1 i~~~~~~~L~~~G~~s~e~la~~~~~eL~~-i~g~~~e~a~~ii~~a~~~ 49 (50)
T TIGR01954 1 IDEEIAQLLVEEGFTTVEDLAYVPIDELLS-IEGFDEETAKELINRARNA 49 (50)
T ss_pred CCHHHHHHHHHcCCCCHHHHHccCHHHHhc-CCCCCHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999 6799999999999998753
No 168
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.59 E-value=0.00018 Score=82.42 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=56.9
Q ss_pred hhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 591 TDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 591 ~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
.++..||.|-+..+. |.|||+|++++++||++ +++++.||..+..++|.. ++|||+|+|++|++++
T Consensus 420 aq~~~~l~hf~sr~a---l~I~GLG~k~i~~L~~~g~I~~~~Dl~~L~~~~L~~-L~GfG~Ksa~nIl~~I 486 (652)
T TIGR00575 420 AQRVERIKHFASRNA---MDIEGLGDKVIEQLFEKKLVRSVADLYALKKEDLLE-LEGFGEKSAQNLLNAI 486 (652)
T ss_pred HHHHHHhHHhhcCCc---cCCCCcCHHHHHHHHHcCCcCCHHHHHhcCHHHHhh-ccCccHHHHHHHHHHH
Confidence 456677777665443 78999999999999999 579999999999888887 8999999999999998
No 169
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=97.49 E-value=0.00024 Score=63.36 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=39.7
Q ss_pred hhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcC
Q psy15878 605 LRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRH 647 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~ 647 (693)
+.+|+++||||+..|..|..+||.|+++|+.++|.+|...+..
T Consensus 52 ~AdL~ri~gi~~~~a~LL~~AGv~Tv~~LA~~~p~~L~~~l~~ 94 (122)
T PF14229_consen 52 QADLMRIPGIGPQYAELLEHAGVDTVEELAQRNPQNLHQKLGR 94 (122)
T ss_pred HHHhhhcCCCCHHHHHHHHHhCcCcHHHHHhCCHHHHHHHHHH
Confidence 4678899999999999999999999999999999999998743
No 170
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=97.46 E-value=0.00045 Score=77.48 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=50.6
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
..|-+|||||++|.++|+++ |.|+++|.+|+.++|.+ ++|+|.+.|++|.+..+
T Consensus 514 s~L~~I~GiG~kr~~~LL~~-Fgs~~~I~~As~eeL~~-v~gi~~~~A~~I~~~l~ 567 (574)
T PRK14670 514 LNYTKIKGIGEKKAKKILKS-LGTYKDILLLNEDEIAE-KMKINIKMAKKIKKFAE 567 (574)
T ss_pred cccccCCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHh-CCCCCHHHHHHHHHHHH
Confidence 47789999999999999999 99999999999999998 78999999999998874
No 171
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=97.44 E-value=0.00019 Score=59.62 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=40.7
Q ss_pred ccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHh
Q psy15878 602 APNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKI 645 (693)
Q Consensus 602 ~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~ 645 (693)
+..+.+|.+|||||++.|+-|..-||.|+++|+..+|.+|-..+
T Consensus 8 ~~~~~~L~~iP~IG~a~a~DL~~LGi~s~~~L~g~dP~~Ly~~l 51 (93)
T PF11731_consen 8 RAGLSDLTDIPNIGKATAEDLRLLGIRSPADLKGRDPEELYERL 51 (93)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHcCCCCHHHHhCCCHHHHHHHH
Confidence 45678999999999999999999999999999999999998876
No 172
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.43 E-value=0.002 Score=75.74 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=72.8
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
..+.+|||+||...-+.+...+...+.. ..+.. .+.+..=..+ ..++..+
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~--------------~~i~~--------------~k~i~~E~~~--~~~~~~~ 570 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGIL--------------ENIEK--------------KKLIFVETKD--AQETSDA 570 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHH--------------HHHhc--------------CCCEEEeCCC--cchHHHH
Confidence 5789999999999999998887752111 00000 0112221111 2577888
Q ss_pred HHHHhC----CCCeEEEec--chhhcccCCCC---cEEEEec-CcCC---------------------C-cc---CCHHH
Q psy15878 258 EEAYLA----GTLQIICCT--STLAAGVNLPA---QRVIIRD-SYVG---------------------R-DF---ISLNM 302 (693)
Q Consensus 258 e~~f~~----g~i~VLvaT--~~l~~Gvnlp~---~~vVI~~-~~~g---------------------~-~~---~s~~~ 302 (693)
.+.|+. |.-.||+|+ ..+++|||+|+ ..|||.. |+.. . .+ .-...
T Consensus 571 l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~ 650 (705)
T TIGR00604 571 LERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRA 650 (705)
T ss_pred HHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Confidence 888964 455699999 89999999998 3344432 2210 0 00 11235
Q ss_pred HHHHhhccCCCCCCCCCcEEEEecc
Q psy15878 303 YKQMVGRAGRTGLQESGESIMLCKT 327 (693)
Q Consensus 303 ~~Qr~GRaGR~g~d~~G~~i~l~~~ 327 (693)
..|-+||+=|...| .|.++ ++++
T Consensus 651 v~QaiGR~IR~~~D-~G~ii-llD~ 673 (705)
T TIGR00604 651 VNQAIGRVIRHKDD-YGSIV-LLDK 673 (705)
T ss_pred HHHHhCccccCcCc-eEEEE-EEeh
Confidence 68999999999855 67544 4443
No 173
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.43 E-value=0.00033 Score=73.78 Aligned_cols=68 Identities=31% Similarity=0.398 Sum_probs=56.5
Q ss_pred hhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhh-hhhhHHHHHH
Q psy15878 608 LMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFIT-KMDKVEAMKN 676 (693)
Q Consensus 608 l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~-~~~~~~~~~~ 676 (693)
+.++||||++++++|+++||.|+++|+.+++++|.++. |++++.|++|.+.|++.... .+.++.++.+
T Consensus 1 l~~i~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~-g~~~~~a~~l~~~~~~~~~~~~~~t~~~~~~ 69 (310)
T TIGR02236 1 LEDLPGVGPATAEKLREAGYDTFEAIAVASPKELSEIA-GISEGTAAKIIQAARKAADLGGFETADDVLE 69 (310)
T ss_pred CcccCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHhcc-CCCHHHHHHHHHHHHHHhhccCCCCHHHHHH
Confidence 35799999999999999999999999999999999955 99999999999999755443 2455554433
No 174
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=97.39 E-value=0.00067 Score=76.66 Aligned_cols=57 Identities=25% Similarity=0.297 Sum_probs=52.4
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
..|.+|||||++++++|++. |.|+++|..|+.++|.+ ++|+|.+.|++|.+..++++
T Consensus 637 s~L~~IPGIGpkr~k~LL~~-FGSle~I~~AS~eELa~-V~Gig~k~Ae~I~~~L~~~~ 693 (694)
T PRK14666 637 GELQRVEGIGPATARLLWER-FGSLQAMAAAGEEGLAA-VPGIGPARAAALHEHLKTLF 693 (694)
T ss_pred hHHhhCCCCCHHHHHHHHHH-hCCHHHHHhcCHHHHHh-cCCcCHHHHHHHHHHHHHhh
Confidence 67889999999999999999 77999999999999877 78999999999999987764
No 175
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.37 E-value=0.0075 Score=65.33 Aligned_cols=252 Identities=14% Similarity=0.077 Sum_probs=139.5
Q ss_pred CCCcEEEEcccchHHHHhc----hhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCC---------------
Q psy15878 38 NKKSIYICTIEKGSKLIGS----LIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKK--------------- 98 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~----l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~--------------- 98 (693)
-++|||||+|=-+-.++.. -.....|.++.++|+|.+|.+.- .--.++..++..+...+.
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~M-QNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~L 208 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLM-QNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYL 208 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHH-hhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Confidence 5789999999775444442 11334679999999999997753 222345555555543331
Q ss_pred ------CceEEEEcCcCCCHHHHHHhhcC--CCccCCCCcccce--------eeEEeCceeeeecCCCCchhhhcccccc
Q psy15878 99 ------SIQIFAMSATIGNINALSTFIEG--ITYVENSRPTKHS--------EYVTVDKRVFQSFDGKSLTEIYADNLDY 162 (693)
Q Consensus 99 ------~~qii~lSATl~n~~~la~~l~~--~~~~~~~rpv~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (693)
-.|.|++|+.... ++...++. ..+....+-.+.. ..+.+.+....++... ........+.|
T Consensus 209 dg~a~~~RQtii~S~~~~p--e~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s-~~~~~d~Rf~y 285 (442)
T PF06862_consen 209 DGQAKYYRQTIIFSSFQTP--EINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS-PADDPDARFKY 285 (442)
T ss_pred cCcchheeEeEEecCCCCH--HHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC-cchhhhHHHHH
Confidence 2599999998742 22222221 1111111100000 0111112222222111 00000000000
Q ss_pred cCCCCChhhHHHHH-h-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhh
Q psy15878 163 SLTGSGPDAVLHLV-Q-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILY 240 (693)
Q Consensus 163 ~~~~~~~~~l~~l~-~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~ 240 (693)
.....+-.+. . ..+.+|||+||--+=.++-..|.+...
T Consensus 286 ----F~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~------------------------------------ 325 (442)
T PF06862_consen 286 ----FTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENI------------------------------------ 325 (442)
T ss_pred ----HHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCC------------------------------------
Confidence 0001122222 2 668899999998888888777775222
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchh--hcccCCCCcEEEEecCcCCCccCCHH---HHHHHhhccCC-CC
Q psy15878 241 GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTL--AAGVNLPAQRVIIRDSYVGRDFISLN---MYKQMVGRAGR-TG 314 (693)
Q Consensus 241 gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l--~~Gvnlp~~~vVI~~~~~g~~~~s~~---~~~Qr~GRaGR-~g 314 (693)
..+..|--.+..+-...-..|..|..++|+-|-=+ =+--.+.+++.||.+.. |..+. ++..+++.... .+
T Consensus 326 sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~----P~~p~fY~El~n~~~~~~~~~~ 401 (442)
T PF06862_consen 326 SFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGP----PENPQFYSELLNMLDESSGGEV 401 (442)
T ss_pred eEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECC----CCChhHHHHHHhhhcccccccc
Confidence 26667888888888899999999999999999532 23456777788887764 44444 44555544433 11
Q ss_pred CCCCCcEEEEecccccHHHHHHHH
Q psy15878 315 LQESGESIMLCKTMQDFLRFSSMM 338 (693)
Q Consensus 315 ~d~~G~~i~l~~~~~~~~~~~~~l 338 (693)
....+.|.++++.- |.-.+++++
T Consensus 402 ~~~~~~~~~lysk~-D~~~LErIV 424 (442)
T PF06862_consen 402 DAADATVTVLYSKY-DALRLERIV 424 (442)
T ss_pred cccCceEEEEecHh-HHHHHHHHh
Confidence 12356788888776 665555443
No 176
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. This entry represents the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1KDH_A 1KEJ_A 1JMS_A 2IHM_A 3OGU_A 1MQ2_A 2P66_A 7ICI_A 1ZQN_A 1ZQK_A ....
Probab=97.37 E-value=0.00019 Score=53.15 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=23.5
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIAR 635 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~ 635 (693)
..+++|.|||+++|+++|+.|++|++||.+
T Consensus 2 ~~f~~I~GVG~~tA~~w~~~G~rtl~Dl~~ 31 (52)
T PF10391_consen 2 KLFTGIWGVGPKTARKWYAKGIRTLEDLRK 31 (52)
T ss_dssp HHHHTSTT--HHHHHHHHHTT--SHHHHHH
T ss_pred cchhhcccccHHHHHHHHHhCCCCHHHHhh
Confidence 467899999999999999999999999954
No 177
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.37 E-value=0.00038 Score=67.17 Aligned_cols=56 Identities=23% Similarity=0.197 Sum_probs=44.6
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChH---HHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAK---EMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~---~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
..|+.+|||||++|.++.+ ..|++++..|-.. .....++|+|+|+|++|+-..+..
T Consensus 72 ~~L~~V~GIGpK~Al~iL~--~~~~~el~~aI~~~d~~~L~~ipGiGkKtAerIileLk~k 130 (191)
T TIGR00084 72 KELIKVNGVGPKLALAILS--NMSPEEFVYAIETEEVKALVKIPGVGKKTAERLLLELKGK 130 (191)
T ss_pred HHHhCCCCCCHHHHHHHHh--cCCHHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHhh
Confidence 5678999999999999965 4578777777664 555559999999999999776443
No 178
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=97.30 E-value=0.0005 Score=66.66 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=49.0
Q ss_pred hhhhcCCCCCHHHHHHHHHc-CCCC-HHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 606 RALMDLPGVKIGRARQLLNA-GYSS-LELIARADAKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~-g~~s-~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
..|..+|||||++|+++.+. |..+ .+.+..++++.|.+ ++|+|+|+|++|+...+...
T Consensus 73 ~~L~~i~GIGpk~A~~il~~fg~~~l~~~i~~~d~~~L~~-v~Gig~k~A~~I~~~l~~~~ 132 (192)
T PRK00116 73 RLLISVSGVGPKLALAILSGLSPEELVQAIANGDVKALTK-VPGIGKKTAERIVLELKDKL 132 (192)
T ss_pred HHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHhCCHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999988 4433 46788889999977 88999999999999986554
No 179
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=97.27 E-value=0.00086 Score=75.22 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=48.2
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
..|-+|||||++|.++|+++ |.|+++|.+|+.++|.+ + |+|++.|++|.+..
T Consensus 514 S~Ld~I~GiG~kr~~~Ll~~-Fgs~~~ik~As~eeL~~-v-gi~~~~A~~I~~~l 565 (567)
T PRK14667 514 DILDKIKGIGEVKKEIIYRN-FKTLYDFLKADDEELKK-L-GIPPSVKQEVKKYL 565 (567)
T ss_pred CccccCCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHH-c-CCCHHHHHHHHHHh
Confidence 56779999999999999999 99999999999999999 5 99999999998754
No 180
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=97.26 E-value=0.00097 Score=75.11 Aligned_cols=56 Identities=27% Similarity=0.423 Sum_probs=52.1
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
..|-+|||||++|.++|++. |.|+++|..|+.++|.+ ++|+|.+.|++|..+|-+-
T Consensus 608 s~L~~IpGiG~kr~~~LL~~-FgS~~~i~~As~eel~~-v~gi~~~~A~~i~~~~~~~ 663 (691)
T PRK14672 608 LSFERLPHVGKVRAHRLLAH-FGSFRSLQSATPQDIAT-AIHIPLTQAHTILHAATRS 663 (691)
T ss_pred cccccCCCCCHHHHHHHHHH-hcCHHHHHhCCHHHHHh-CCCCCHHHHHHHHHHhhcc
Confidence 56779999999999999999 99999999999999999 7799999999999999654
No 181
>PRK07758 hypothetical protein; Provisional
Probab=97.26 E-value=0.00087 Score=55.28 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15878 611 LPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKL 662 (693)
Q Consensus 611 i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~ 662 (693)
+|+++....+.|.++||.|++||+..+.++|.+ ++|||+|..+.|.+....
T Consensus 39 ~~~LSvRA~N~Lk~AGI~TL~dLv~~te~ELl~-iknlGkKSL~EIkekL~E 89 (95)
T PRK07758 39 LSLLSAPARRALEHHGIHTVEELSKYSEKEILK-LHGMGPASLPKLRKALEE 89 (95)
T ss_pred CccccHHHHHHHHHcCCCcHHHHHcCCHHHHHH-ccCCCHHHHHHHHHHHHH
Confidence 567888889999999999999999999999999 789999999999887654
No 182
>PTZ00035 Rad51 protein; Provisional
Probab=97.25 E-value=0.00085 Score=71.10 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=60.9
Q ss_pred CCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q psy15878 611 LPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNL 677 (693)
Q Consensus 611 i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~ 677 (693)
-|||++..+.+|.++||.|+++|+.+++.+|.+ +.|++...|++|++.|+++....|.+|.++.++
T Consensus 28 ~~g~~~~~~~kL~~~g~~t~~~~~~~~~~~L~~-~~gis~~~~~~i~~~~~~~~~~~~~ta~~~~~~ 93 (337)
T PTZ00035 28 SAGINAADIKKLKEAGICTVESVAYATKKDLCN-IKGISEAKVEKIKEAASKLVPMGFISATEYLEA 93 (337)
T ss_pred cCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHH-hhCCCHHHHHHHHHHHHHhcccCCCCHHHHHHh
Confidence 389999999999999999999999999999999 459999999999999999987788888888765
No 183
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.20 E-value=0.001 Score=70.29 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=61.3
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNL 677 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~ 677 (693)
+-+||++..+.+|.++||.|+++|+.+++.+|.+ +.|++...|.+|++.|++.+...|.+|.++.++
T Consensus 35 ~~~g~~~~~~~kL~~~g~~tv~~~~~~~~~~L~~-~~g~s~~~~~ki~~~a~~~~~~~~~ta~~~~~~ 101 (344)
T PLN03187 35 ISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTG-IKGLSEAKVDKICEAAEKLLNQGFITGSDALLK 101 (344)
T ss_pred hhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHH-hcCCCHHHHHHHHHHHHHhhcccCCcHHHHHhh
Confidence 3378999999999999999999999999999999 569999999999999999988788899887654
No 184
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.19 E-value=0.00094 Score=69.95 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q psy15878 612 PGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNL 677 (693)
Q Consensus 612 ~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~ 677 (693)
+||++..+.+|.++||.|+++++.+++.+|.+ +.|++...|++|++.|.+.....|.+|.++.++
T Consensus 7 ~g~~~~~~~~L~~~g~~t~~~~~~~~~~~L~~-~~gls~~~~~~i~~~~~~~~~~~~~ta~~~~~~ 71 (313)
T TIGR02238 7 HGINAADIKKLKSAGICTVNGVIMTTRRALCK-IKGLSEAKVDKIKEAASKIINPGFITAFEISQK 71 (313)
T ss_pred CCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHH-hcCCCHHHHHHHHHHHHhhhcccCccHHHHHHh
Confidence 67999999999999999999999999999999 559999999999999999887778999887654
No 185
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.14 E-value=0.0012 Score=75.90 Aligned_cols=67 Identities=21% Similarity=0.308 Sum_probs=57.6
Q ss_pred hhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcC-CCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 590 LTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAG-YSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 590 l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g-~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
..++..||.|-+..+ .|.|+|+|++++.+|+++| ++++.||..+..++|.. ++|||+|+|++|++++
T Consensus 449 paq~~~~l~hf~sr~---al~I~GLG~k~i~~L~~~g~V~~~~Dl~~L~~~~L~~-l~g~g~Ksa~~Ll~~I 516 (689)
T PRK14351 449 PAQLERSIEHYASRD---ALDIEGLGEERVQQLVDAGLVESLADLYDLTVADLAE-LEGWGETSAENLLAEL 516 (689)
T ss_pred HHHHHHHHHHHhccc---ccCCCCcCHHHHHHHHHcCCCCCHHHHHHcCHHHHhc-CcCcchhHHHHHHHHH
Confidence 346677888876644 4789999999999999995 69999999999998766 7899999999999987
No 186
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=96.75 E-value=0.0055 Score=69.62 Aligned_cols=52 Identities=25% Similarity=0.426 Sum_probs=48.2
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
..|.+|||||++++++|++. |.|+++|.+|+.++|.+. +|.+.|++|.+..+
T Consensus 552 S~L~~IpGIG~kr~~~LL~~-FgSi~~I~~As~eeL~~v---i~~k~A~~I~~~l~ 603 (624)
T PRK14669 552 SELLEIPGVGAKTVQRLLKH-FGSLERVRAATETQLAAV---VGRAAAEAIIAHFT 603 (624)
T ss_pred HHHhcCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHHHH---hCHHHHHHHHHHhc
Confidence 56779999999999999999 999999999999999884 99999999988874
No 187
>PRK14973 DNA topoisomerase I; Provisional
Probab=96.71 E-value=0.0046 Score=73.59 Aligned_cols=65 Identities=26% Similarity=0.303 Sum_probs=56.5
Q ss_pred HHHhhccCccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 594 PQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 594 ~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
..|.+.|-++ |+.|+|+|++++..|+.|||.|+++|++|++++|... .|+|.|.++++...|+..
T Consensus 869 ~~~~~~~~~e----l~~vkg~ge~t~~~l~~ag~~~~e~l~~~d~~~la~~-~~i~~k~~~~~~~~~~~~ 933 (936)
T PRK14973 869 KAAFERGRAE----LLSVPGLGETTLEKLYLAGVYDGDLLVSADPKKLAKV-TGIDEKKLRNLQAYAKKV 933 (936)
T ss_pred hhhhcccchh----hhhccCCCHHHHHHHHHcCCCCHHHhccCCHHHHhhh-cCCCHHHHHHHHHHHhhh
Confidence 4444444443 9999999999999999999999999999999999994 599999999999999754
No 188
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=96.71 E-value=0.0046 Score=69.04 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=57.0
Q ss_pred hhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcCC-CCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 591 TDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGY-SSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 591 ~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~-~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
.+...||.|-+..+. |.|.|+|.++..+|+++|+ +++.||-....++|.. ++|||+|.+++|++++
T Consensus 413 aq~~~~i~hf~Sr~a---mdI~GlGe~~i~~L~~~G~i~~~~Diy~L~~~~l~~-l~gfgeks~~nll~aI 479 (562)
T PRK08097 413 EQFLARLVWLSGKQG---LGLDGIGEGTWRALHQTGLFEHLFSWLALTPEQLAN-TPGIGKARAEQLWHQF 479 (562)
T ss_pred HHHHHHhHhhhcccc---cCCCCcCHHHHHHHHHcCCcCCHHHHhcCCHHHHhc-CcCccHHHHHHHHHHH
Confidence 456667777665444 7899999999999999985 9999999999998888 7899999999999987
No 189
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=96.70 E-value=0.0054 Score=69.28 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=47.7
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLIS 658 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~ 658 (693)
+.|..|||||++++++|+++ |.|+++|..|+.+++.+ ++|+|.+.|++|.+
T Consensus 525 ~~L~~IpGIG~kr~~~LL~~-FGS~~~I~~As~eeL~~-vpGi~~~~A~~I~~ 575 (577)
T PRK14668 525 TVLDDVPGVGPETRKRLLRR-FGSVEGVREASVEDLRD-VPGVGEKTAETIRE 575 (577)
T ss_pred hHHhcCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHHh-CCCCCHHHHHHHHH
Confidence 67889999999999999999 99999999999999977 88999999999865
No 190
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=96.69 E-value=0.0044 Score=59.99 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=46.9
Q ss_pred hhhhcCCCCCHHHHHHHHHc-CCCC-HHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 606 RALMDLPGVKIGRARQLLNA-GYSS-LELIARADAKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~-g~~s-~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
..|..++||||+.|..+.+. +... ...|+.-++..|.+ ++|+|+|+|++|+-..+..+
T Consensus 73 ~~Li~V~GIGpK~Al~ILs~~~~~~l~~aI~~~D~~~L~~-vpGIGkKtAerIilELk~Ki 132 (194)
T PRK14605 73 ETLIDVSGIGPKLGLAMLSAMNAEALASAIISGNAELLST-IPGIGKKTASRIVLELKDKI 132 (194)
T ss_pred HHHhCCCCCCHHHHHHHHHhCCHHHHHHHHHhCCHHHHHh-CCCCCHHHHHHHHHHHHHHH
Confidence 45679999999999999998 6666 45666777777777 89999999999887775444
No 191
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=96.68 E-value=0.0035 Score=55.10 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=43.1
Q ss_pred cchhhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
....+|.++|||||+.|++..++ .|+|++||.+ ++|+|+++.+.+.+....+
T Consensus 58 A~~~el~~lpGigP~~A~~IV~nGpf~sveDL~~---------V~GIgekqk~~l~k~~~~f 110 (132)
T PRK02515 58 SSVRAFRQFPGMYPTLAGKIVKNAPYDSVEDVLN---------LPGLSERQKELLEANLDNF 110 (132)
T ss_pred cCHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHc---------CCCCCHHHHHHHHHhhcce
Confidence 45677899999999999999998 5999999854 8899999777776666544
No 192
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=96.66 E-value=0.0052 Score=70.65 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=50.5
Q ss_pred chhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 604 NLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 604 el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
.++..+.|||||+++|+.|++. |.|+++|..|+.++|.+ ++|+|+++|++|.+..+
T Consensus 496 r~L~aLgIpgVG~~~ak~L~~~-f~sl~~l~~As~eeL~~-i~GIG~~~A~~I~~ff~ 551 (652)
T TIGR00575 496 RLLFALGIRHVGEVTAKNLAKH-FGTLDKLKAASLEELLS-VEGVGPKVAESIVNFFH 551 (652)
T ss_pred HHHhhccCCCcCHHHHHHHHHH-hCCHHHHHhCCHHHHhc-CCCcCHHHHHHHHHHHh
Confidence 3677779999999999999999 67999999999999987 78999999999988763
No 193
>PRK13482 DNA integrity scanning protein DisA; Provisional
Probab=96.57 E-value=0.0055 Score=63.78 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=55.5
Q ss_pred ccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhh
Q psy15878 602 APNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFI 665 (693)
Q Consensus 602 ~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~ 665 (693)
|..---|..+|++++..|+.|.+. |.|+..|..|++++|.+ ++|+|++.|+.|.++++++..
T Consensus 283 prGyRiLs~IPrl~k~iAk~Ll~~-FGSL~~Il~As~eeL~~-VeGIGe~rA~~I~e~l~Rl~e 344 (352)
T PRK13482 283 PRGYRLLSKIPRLPSAVIENLVEH-FGSLQGLLAASIEDLDE-VEGIGEVRARAIREGLSRLAE 344 (352)
T ss_pred CcHHHHHhcCCCCCHHHHHHHHHH-cCCHHHHHcCCHHHHhh-CCCcCHHHHHHHHHHHHHHHH
Confidence 334445779999999999999999 88999999999999998 899999999999999988865
No 194
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.55 E-value=0.0063 Score=64.39 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=61.4
Q ss_pred hhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q psy15878 607 ALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNL 677 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~ 677 (693)
+-++-+||++..+.+|.++||.|+++++.+++.+|.++ .|++...++++++.+++.+...|.+|+++.+.
T Consensus 29 ~~l~~~gi~~~~i~kL~~~g~~T~~~~~~~~~~~L~~i-~~is~~~~~~~~~~~~~~~~~~~~ta~~~~~~ 98 (342)
T PLN03186 29 EQLQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQI-KGISEAKVEKILEAASKLVPLGFTTASQLHAQ 98 (342)
T ss_pred HHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHh-cCCCHHHHHHHHHHHHHhcccccchHHHHhhc
Confidence 33344789999999999999999999999999999995 59999999999999998888788888877654
No 195
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.54 E-value=0.0058 Score=64.23 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy15878 611 LPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKN 676 (693)
Q Consensus 611 i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~ 676 (693)
-+|+++..+.+|.++||.|+++|+.+++.+|.++ .|++...++++++.+++.+...|.+|+++.+
T Consensus 6 ~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~L~~i-~~ls~~~~~~~~~~~~~~~~~~~~t~~~l~~ 70 (316)
T TIGR02239 6 GNGITAADIKKLQEAGLHTVESVAYAPKKQLLEI-KGISEAKADKILAEAAKLVPMGFTTATEFHQ 70 (316)
T ss_pred cCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHH-hCCCHHHHHHHHHHHHHhcccccccHHHHHh
Confidence 3569999999999999999999999999999995 5999999999999999888777888888765
No 196
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=96.53 E-value=0.0034 Score=60.16 Aligned_cols=64 Identities=22% Similarity=0.184 Sum_probs=42.5
Q ss_pred CCCcEEEEcccchHHHHhchh---------ccCCCCcccEEEEecccccCCCCChHH-HHHHHHHHhccCCCceEEEEcC
Q psy15878 38 NKKSIYICTIEKGSKLIGSLI---------QENRIDEIGLIVIDEFHMLNEPQRGPI-LECVVSKVLYLKKSIQIFAMSA 107 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~---------~~~~l~~i~lvVvDE~H~l~d~~rg~~-le~il~~l~~~~~~~qii~lSA 107 (693)
...+++++|..++......-. ........++||+||+|+... .. +..++. .+...+|+|||
T Consensus 110 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~----~~~~~~i~~-----~~~~~~l~lTA 180 (184)
T PF04851_consen 110 NDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS----DSSYREIIE-----FKAAFILGLTA 180 (184)
T ss_dssp SS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH----HHHHHHHHH-----SSCCEEEEEES
T ss_pred ccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC----HHHHHHHHc-----CCCCeEEEEEe
Confidence 678999999999876544211 112336778999999998653 22 444444 45678999999
Q ss_pred cCC
Q psy15878 108 TIG 110 (693)
Q Consensus 108 Tl~ 110 (693)
|+.
T Consensus 181 Tp~ 183 (184)
T PF04851_consen 181 TPF 183 (184)
T ss_dssp S-S
T ss_pred Ccc
Confidence 974
No 197
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=96.35 E-value=0.0069 Score=48.13 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=37.8
Q ss_pred hhhhc-CCCCCHHHHHHHHHc-----CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHH
Q psy15878 606 RALMD-LPGVKIGRARQLLNA-----GYSSLELIARADAKEMVAKIRHLPLRSARNLISA 659 (693)
Q Consensus 606 ~~l~~-i~gi~~~~a~~L~~~-----g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~ 659 (693)
.+|.. +||||+++|+++.+. +|+++++|.. ++|+|++++++|...
T Consensus 16 ~~L~~~ipgig~~~a~~Il~~R~~~g~~~s~~dL~~---------v~gi~~~~~~~i~~~ 66 (69)
T TIGR00426 16 EELQRAMNGVGLKKAEAIVSYREEYGPFKTVEDLKQ---------VPGIGNSLVEKNLAV 66 (69)
T ss_pred HHHHhHCCCCCHHHHHHHHHHHHHcCCcCCHHHHHc---------CCCCCHHHHHHHHhh
Confidence 36777 999999999999988 5887777754 679999999999765
No 198
>KOG4439|consensus
Probab=96.30 E-value=0.12 Score=57.73 Aligned_cols=83 Identities=14% Similarity=0.109 Sum_probs=63.7
Q ss_pred eEEEcCCCCHHHHHHHHHHHh--CCCCeE-EEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCC
Q psy15878 242 VAYHHADLTAGERRLIEEAYL--AGTLQI-ICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQES 318 (693)
Q Consensus 242 v~~~h~~l~~~eR~~ve~~f~--~g~i~V-LvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~ 318 (693)
...+||.....+|..+.+.|. +|..+| |++=...+.|+|+-..+++|.-+. ..+++--.|-+-|.-|.|+...
T Consensus 773 y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl----HWNPaLEqQAcDRIYR~GQkK~ 848 (901)
T KOG4439|consen 773 YTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL----HWNPALEQQACDRIYRMGQKKD 848 (901)
T ss_pred eeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec----ccCHHHHHHHHHHHHHhcccCc
Confidence 566899999999999999997 354454 556677888999999998888775 6688888999999999996554
Q ss_pred CcEEEEeccc
Q psy15878 319 GESIMLCKTM 328 (693)
Q Consensus 319 G~~i~l~~~~ 328 (693)
-..+.+....
T Consensus 849 V~IhR~~~~g 858 (901)
T KOG4439|consen 849 VFIHRLMCKG 858 (901)
T ss_pred eEEEEEEecC
Confidence 4444444333
No 199
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=96.29 E-value=0.005 Score=48.29 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 613 GVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 613 gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
++.......|.++||.|+.||...+.++|.. ++|||+++.+.|.+..+
T Consensus 18 ~LS~Ra~n~L~~~~I~tv~dL~~~s~~~L~~-i~n~G~ksl~EI~~~L~ 65 (66)
T PF03118_consen 18 GLSVRAYNCLKRAGIHTVGDLVKYSEEDLLK-IKNFGKKSLEEIKEKLK 65 (66)
T ss_dssp TSBHHHHHHHHCTT--BHHHHHCS-HHHHHT-STTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCcCHHHHHhCCHHHHHh-CCCCCHhHHHHHHHHHc
Confidence 5677788888888999999999999999998 88999999999987653
No 200
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=96.26 E-value=0.0049 Score=64.30 Aligned_cols=107 Identities=18% Similarity=0.171 Sum_probs=56.5
Q ss_pred hHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCC--CcccEEEEecccccCCCC
Q psy15878 4 EKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRI--DEIGLIVIDEFHMLNEPQ 81 (693)
Q Consensus 4 e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l--~~i~lvVvDE~H~l~d~~ 81 (693)
+-..++.+++....+++..+.|...............+++|+|++.+...-... ....+ -++++||+||+|.+.+ .
T Consensus 72 ~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~-~~~~l~~~~~~~vIvDEaH~~k~-~ 149 (299)
T PF00176_consen 72 QWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKK-DKEDLKQIKWDRVIVDEAHRLKN-K 149 (299)
T ss_dssp HHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTH-TTHHHHTSEEEEEEETTGGGGTT-T
T ss_pred hhhhhhccccccccccccccccccccccccccccccceeeeccccccccccccc-cccccccccceeEEEeccccccc-c
Confidence 334556666544466888888764101111222367899999999864000000 00011 3589999999999853 2
Q ss_pred ChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHH
Q psy15878 82 RGPILECVVSKVLYLKKSIQIFAMSATIGN--INALST 117 (693)
Q Consensus 82 rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~ 117 (693)
.+..... +..+ . ....++||||+-. +.++..
T Consensus 150 ~s~~~~~-l~~l---~-~~~~~lLSgTP~~n~~~dl~~ 182 (299)
T PF00176_consen 150 DSKRYKA-LRKL---R-ARYRWLLSGTPIQNSLEDLYS 182 (299)
T ss_dssp TSHHHHH-HHCC---C-ECEEEEE-SS-SSSGSHHHHH
T ss_pred ccccccc-cccc---c-cceEEeecccccccccccccc
Confidence 2223322 2223 2 5578899999752 455443
No 201
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=96.25 E-value=0.011 Score=68.18 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=47.4
Q ss_pred hhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 608 LMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 608 l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
=+.|||||+++|+.|.+. |.|+++|..|+.++|.+ ++|+|+++|++|.+...
T Consensus 513 algi~~IG~~~ak~L~~~-f~sl~~l~~As~eeL~~-i~GIG~~~A~sI~~ff~ 564 (665)
T PRK07956 513 ALGIRHVGEKAAKALARH-FGSLEALRAASEEELAA-VEGVGEVVAQSIVEFFA 564 (665)
T ss_pred hhhccCcCHHHHHHHHHH-cCCHHHHHhCCHHHHhc-cCCcCHHHHHHHHHHHh
Confidence 348999999999999998 89999999999999988 78999999999988764
No 202
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=96.18 E-value=0.0075 Score=68.74 Aligned_cols=53 Identities=28% Similarity=0.456 Sum_probs=49.0
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
..|..|||||++++++|+++ |.|+++|..|+.++|.+ ++|+|++.|++|.+..
T Consensus 543 s~L~~IpGIG~k~~k~Ll~~-FgS~~~i~~As~eeL~~-v~Gig~~~A~~I~~~l 595 (598)
T PRK00558 543 SALDDIPGIGPKRRKALLKH-FGSLKAIKEASVEELAK-VPGISKKLAEAIYEAL 595 (598)
T ss_pred hhHhhCCCcCHHHHHHHHHH-cCCHHHHHhCCHHHHhh-cCCcCHHHHHHHHHHh
Confidence 67789999999999999999 99999999999999977 8899999999998764
No 203
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=96.17 E-value=0.0094 Score=52.98 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=37.9
Q ss_pred cchhhhhcCCCCCHHHHHHHHHc-----CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHH
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNA-----GYSSLELIARADAKEMVAKIRHLPLRSARNLIS 658 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~-----g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~ 658 (693)
....+|.++||||+++|+++.+. +|.|+++|. . ++|+|++++++|..
T Consensus 65 A~~~eL~~lpGIG~~~A~~Ii~~R~~~g~f~s~eeL~--------~-V~GIg~k~~~~i~~ 116 (120)
T TIGR01259 65 ASLEELQALPGIGPAKAKAIIEYREENGAFKSVDDLT--------K-VSGIGEKSLEKLKD 116 (120)
T ss_pred CCHHHHhcCCCCCHHHHHHHHHHHHhcCCcCCHHHHH--------c-CCCCCHHHHHHHHh
Confidence 34567889999999999999887 477776663 3 78999999998865
No 204
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=96.15 E-value=0.012 Score=53.42 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=40.1
Q ss_pred CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCC
Q psy15878 38 NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN 111 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n 111 (693)
++.-|-|+|...+... +.+.....++++||+||+|... +. .......+..+-. .....+|.||||+|.
T Consensus 71 g~~~i~vMc~at~~~~---~~~p~~~~~yd~II~DEcH~~D-p~-sIA~rg~l~~~~~-~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHF---LLNPCRLKNYDVIIMDECHFTD-PT-SIAARGYLRELAE-SGEAKVIFMTATPPG 138 (148)
T ss_dssp SSSSEEEEEHHHHHHH---HHTSSCTTS-SEEEECTTT--S-HH-HHHHHHHHHHHHH-TTS-EEEEEESS-TT
T ss_pred CCCcccccccHHHHHH---hcCcccccCccEEEEeccccCC-HH-HHhhheeHHHhhh-ccCeeEEEEeCCCCC
Confidence 5677888998876443 3345667899999999999753 21 1122222222211 344689999999985
No 205
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.14 E-value=0.069 Score=64.51 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=52.5
Q ss_pred cCCCCHHHHHHHHHH-HhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCC--CCCcEE
Q psy15878 246 HADLTAGERRLIEEA-YLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQ--ESGESI 322 (693)
Q Consensus 246 h~~l~~~eR~~ve~~-f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d--~~G~~i 322 (693)
|.......+....+. .+...+++||-++.+-.|.|-|....+..+ .|+---..+|-+-|+.|+--+ ..|.++
T Consensus 573 ~~~~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvD-----K~Lk~H~L~QAisRtNR~~~~~K~~G~IV 647 (962)
T COG0610 573 HAKLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVD-----KPLKYHNLIQAISRTNRVFPGKKKFGLIV 647 (962)
T ss_pred hHHHHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEec-----cccccchHHHHHHHhccCCCCCCCCcEEE
Confidence 334433444444443 456889999999999999999997666443 255666789999999997544 456666
Q ss_pred EEec
Q psy15878 323 MLCK 326 (693)
Q Consensus 323 ~l~~ 326 (693)
-+..
T Consensus 648 Df~g 651 (962)
T COG0610 648 DFRG 651 (962)
T ss_pred ECcc
Confidence 5554
No 206
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.95 E-value=0.049 Score=65.94 Aligned_cols=120 Identities=18% Similarity=0.096 Sum_probs=98.2
Q ss_pred hhhHHHHH-h----cCC--ceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhc
Q psy15878 169 PDAVLHLV-Q----GNL--MVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYG 241 (693)
Q Consensus 169 ~~~l~~l~-~----~~~--~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~g 241 (693)
...+.+++ . .+. +++||++......-+...+...+ ..
T Consensus 694 ~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~------------------------------------~~ 737 (866)
T COG0553 694 LQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALG------------------------------------IK 737 (866)
T ss_pred HHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcC------------------------------------Cc
Confidence 34444555 3 666 89999999998888888777622 12
Q ss_pred eEEEcCCCCHHHHHHHHHHHhCC--CCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCC
Q psy15878 242 VAYHHADLTAGERRLIEEAYLAG--TLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESG 319 (693)
Q Consensus 242 v~~~h~~l~~~eR~~ve~~f~~g--~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G 319 (693)
...++|+++...|....+.|.++ ..-.+++|.....|+|+-..+.||.++. +..++...|...||-|-|++..=
T Consensus 738 ~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~----~wnp~~~~Qa~dRa~RigQ~~~v 813 (866)
T COG0553 738 YVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDP----WWNPAVELQAIDRAHRIGQKRPV 813 (866)
T ss_pred EEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecc----ccChHHHHHHHHHHHHhcCccee
Confidence 78899999999999999999985 5567778889999999999888888873 67899999999999999987777
Q ss_pred cEEEEeccc
Q psy15878 320 ESIMLCKTM 328 (693)
Q Consensus 320 ~~i~l~~~~ 328 (693)
.++.+....
T Consensus 814 ~v~r~i~~~ 822 (866)
T COG0553 814 KVYRLITRG 822 (866)
T ss_pred EEEEeecCC
Confidence 888888776
No 207
>KOG0391|consensus
Probab=95.93 E-value=0.032 Score=65.20 Aligned_cols=111 Identities=16% Similarity=0.116 Sum_probs=79.3
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.++.||||..-.+...-+-..|.-+++. ..-+.|....++|+..
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgyl------------------------------------Y~RLDg~t~vEqRQaL 1318 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGYL------------------------------------YVRLDGNTSVEQRQAL 1318 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcceE------------------------------------EEEecCCccHHHHHHH
Confidence 8999999987777666665555543322 3345688899999999
Q ss_pred HHHHhCCC--CeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAGT--LQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~--i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
.+.|.... ...|++|-....|||+-..+-||.|+.+.+ |.=-.+..-|+-|.|+.. .-..|.++++.
T Consensus 1319 merFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwN-PtMDaQAQDrChRIGqtR---DVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1319 MERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWN-PTMDAQAQDRCHRIGQTR---DVHIYRLISER 1387 (1958)
T ss_pred HHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCC-chhhhHHHHHHHhhcCcc---ceEEEEeeccc
Confidence 99998643 467889999999999998888888775321 222234555666666655 56778888776
No 208
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=95.93 E-value=0.024 Score=63.71 Aligned_cols=78 Identities=24% Similarity=0.267 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcC
Q psy15878 558 HLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARAD 637 (693)
Q Consensus 558 ~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~ 637 (693)
.+|++++.|+.||=.-.+=- |-+.... .+|-+|||||++|.++|.++ |.|+++|..|+
T Consensus 503 ~lq~irDEaHrfAi~~hR~~------------------R~k~~~~---s~Ld~I~GiG~~r~~~LL~~-Fgs~~~i~~As 560 (581)
T COG0322 503 LLQRIRDEAHRFAITYHRKK------------------RSKAMLQ---SSLDDIPGIGPKRRKALLKH-FGSLKGIKSAS 560 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------hhhhhhc---CccccCCCcCHHHHHHHHHH-hhCHHHHHhcC
Confidence 67888888888764433111 1111111 56789999999999999999 99999999999
Q ss_pred hHHHHHHhcCCCHHHHHHHHHH
Q psy15878 638 AKEMVAKIRHLPLRSARNLISA 659 (693)
Q Consensus 638 ~~~l~~~~~~~~~~~a~~i~~~ 659 (693)
.+++.++ |++.+.|++|.+.
T Consensus 561 ~eel~~v--gi~~~~a~~i~~~ 580 (581)
T COG0322 561 VEELAKV--GISKKLAEKIYEA 580 (581)
T ss_pred HHHHHHc--CCCHHHHHHHHhh
Confidence 9999994 9999999999764
No 209
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=95.87 E-value=0.013 Score=56.28 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=38.8
Q ss_pred hhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 606 RALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
..|..+.||||+.|..+.+. ....+.+............++|+|+|+|++|+-..+..+
T Consensus 73 ~~Li~V~GIGpK~AL~iLs~~~~~el~~aI~~~D~~~L~~vpGIGkKtAerIilELkdK~ 132 (188)
T PRK14606 73 LSLTKVSRLGPKTALKIISNEDAETLVTMIASQDVEGLSKLPGISKKTAERIVMELKDEF 132 (188)
T ss_pred HHHhccCCccHHHHHHHHcCCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 34568899999999888876 333333322223333333478999999999988886554
No 210
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=95.77 E-value=0.029 Score=64.76 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=46.8
Q ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 609 MDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 609 ~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
+.|||||+++|++|.+. |.|+++|..|+.++|.. ++|+|.++|++|.+..+
T Consensus 531 LgIpgIG~~~ak~L~~~-F~si~~L~~As~eeL~~-i~GIG~k~A~sI~~ff~ 581 (689)
T PRK14351 531 LGIPEVGPTTARNLARE-FGTFEAIMDADEEALRA-VDDVGPTVAEEIREFFD 581 (689)
T ss_pred cCCCCcCHHHHHHHHHH-hCCHHHHHhCCHHHHhc-cCCcCHHHHHHHHHHHh
Confidence 48999999999999987 99999999999999987 78999999999988764
No 211
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=95.69 E-value=0.034 Score=63.86 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=57.3
Q ss_pred hhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcC-CCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 591 TDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAG-YSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 591 ~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g-~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
.++..||.|-+..+. |.|.|+|+++..+|+++| ++++.||-....++|.. ++|||+|.|++|++++
T Consensus 424 aq~~~~i~hf~sr~a---ldI~GlG~~~i~~L~~~G~i~~~~Dly~L~~~~l~~-l~g~geksa~nl~~~I 490 (669)
T PRK14350 424 SVIVERIKYFCSKKC---MNIVGLSDKTIEFLFEKKFISSEIDLYTFNFDRLIN-LKGFKDKRINNLKRSI 490 (669)
T ss_pred HHHHhhhheeccCCc---ccccCcCHHHHHHHHHcCCcCCHHHHhhCCHHHHhh-ccCccHHHHHHHHHHH
Confidence 456778888776544 789999999999999995 68899999999888887 7899999999999988
No 212
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=95.69 E-value=0.014 Score=56.90 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=42.5
Q ss_pred hhhhcCCCCCHHHHHHHHHc-CCCCHH-HHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 606 RALMDLPGVKIGRARQLLNA-GYSSLE-LIARADAKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~-g~~s~~-~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
..|..++||||+.|..+.+. +...+. .|+.-+...|.+ ++|+|+|+|++|+-..+..+
T Consensus 74 ~~Li~V~GIGpK~Al~iLs~~~~~~l~~aI~~~D~~~L~~-ipGIGkKtAerIilELkdK~ 133 (203)
T PRK14602 74 IVLISISKVGAKTALAILSQFRPDDLRRLVAEEDVAALTR-VSGIGKKTAQHIFLELKYKL 133 (203)
T ss_pred HHHhCCCCcCHHHHHHHHhhCCHHHHHHHHHhCCHHHHhc-CCCcCHHHHHHHHHHHHHhh
Confidence 34679999999999999997 333332 333344444544 89999999999998886554
No 213
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=95.66 E-value=0.016 Score=55.75 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=42.1
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhc----ChHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARA----DAKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a----~~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
..|..++||||+.|.++.+. -++++|..| +...|.+ ++|+|+|+|++|+-..+..+
T Consensus 72 ~~LisVsGIGPK~ALaILs~--~~~~el~~aI~~~D~~~L~~-vpGIGkKtAeRIIlELkdKl 131 (196)
T PRK13901 72 EELIGVDGIGPRAALRVLSG--IKYNEFRDAIDREDIELISK-VKGIGNKMAGKIFLKLRGKL 131 (196)
T ss_pred HHHhCcCCcCHHHHHHHHcC--CCHHHHHHHHHhCCHHHHhh-CCCCCHHHHHHHHHHHHHhh
Confidence 34669999999999999987 255555444 3334444 79999999999998886554
No 214
>COG3743 Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.025 Score=49.73 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=45.3
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcC--CCHHHHHH-HHHHHHhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRH--LPLRSARN-LISAAKLH 663 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~--~~~~~a~~-i~~~a~~~ 663 (693)
=+|..|.||||+.+..|.+.||.|+.+|+..++.++..+=.. |.-++.+. -+.+|+.+
T Consensus 67 DDLt~I~GIGPk~e~~Ln~~GI~tfaQIAAwt~~di~~id~~l~f~GRi~RDdWi~QAk~L 127 (133)
T COG3743 67 DDLTRISGIGPKLEKVLNELGIFTFAQIAAWTRADIAWIDDYLNFDGRIERDDWIAQAKAL 127 (133)
T ss_pred ccchhhcccCHHHHHHHHHcCCccHHHHHhcCHHHHHHHHhhcCCcchhHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999885322 33344443 55566544
No 215
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.61 E-value=0.13 Score=58.92 Aligned_cols=118 Identities=16% Similarity=0.125 Sum_probs=78.6
Q ss_pred HHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCC
Q psy15878 172 VLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLT 250 (693)
Q Consensus 172 l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~ 250 (693)
+..++. .++.+||.+.|.+..+.++..|.. .+ +. ..+..|..+
T Consensus 462 ~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~--~l---------------------------------~~-~~l~qg~~~ 505 (636)
T TIGR03117 462 TAAILRKAQGGTLVLTTAFSHISAIGQLVEL--GI---------------------------------PA-EIVIQSEKN 505 (636)
T ss_pred HHHHHHHcCCCEEEEechHHHHHHHHHHHHh--hc---------------------------------CC-CEEEeCCCc
Confidence 344444 788999999999999999998865 21 01 334455432
Q ss_pred HHHHHHHHHHHhC----CCCeEEEecchhhcccCC--------CC---cEEEEec-CcC--------------CCcc---
Q psy15878 251 AGERRLIEEAYLA----GTLQIICCTSTLAAGVNL--------PA---QRVIIRD-SYV--------------GRDF--- 297 (693)
Q Consensus 251 ~~eR~~ve~~f~~----g~i~VLvaT~~l~~Gvnl--------p~---~~vVI~~-~~~--------------g~~~--- 297 (693)
.|....+.|++ |.-.||++|+.+-+|||+ |+ ..|||.. |+. |..|
T Consensus 506 --~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~ 583 (636)
T TIGR03117 506 --RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEI 583 (636)
T ss_pred --cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhh
Confidence 34667888886 478999999999999999 33 3455552 221 2122
Q ss_pred --CCHHHHHHHhhccCCCCCC-CCCcEEEEecc
Q psy15878 298 --ISLNMYKQMVGRAGRTGLQ-ESGESIMLCKT 327 (693)
Q Consensus 298 --~s~~~~~Qr~GRaGR~g~d-~~G~~i~l~~~ 327 (693)
.....+.|-+||.=|...| ..|.++++-..
T Consensus 584 ~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 584 INESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred hHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 1234578999999999865 36755554433
No 216
>PRK14973 DNA topoisomerase I; Provisional
Probab=95.59 E-value=0.02 Score=68.28 Aligned_cols=59 Identities=8% Similarity=-0.030 Sum_probs=52.4
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH-hhhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK-LHFI 665 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~-~~~~ 665 (693)
..|+++|||....|.+||++||+|++|++.|+|++|.. +.|+++.++.+....|. ++..
T Consensus 802 ~~~~~~~gv~~~~~~~~~~~G~~~~~d~~~a~p~~La~-~~g~~~~~~~~~~~~~~~~~~~ 861 (936)
T PRK14973 802 ISRLKEIGVPAVSLKKYQEAGFDTPEDFCSVHPAYLAL-KTGISPETICRHAKLVCEKLGR 861 (936)
T ss_pred HHhhcccCCCHHHHHHHHHhcCCCHHHHHhcCHHHHhc-CCCCChhhHHHHHHHHHHHhcC
Confidence 36899999999999999999999999999999999999 66999999998877776 4444
No 217
>PF04994 TfoX_C: TfoX C-terminal domain; InterPro: IPR007077 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes []. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found in association with the N-terminal domain in some, but not all members of this group, suggesting this is an autonomous and functionally unrelated domain. For example it is found associated with Q9JZR1 from SWISSPROT in IPR002125 from INTERPRO.; PDB: 3BQT_A 3MAB_A.
Probab=95.57 E-value=0.0093 Score=48.85 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=35.6
Q ss_pred hhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHH
Q psy15878 607 ALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNL 656 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i 656 (693)
.|.++|+||++..+.|+++||.|+++|....+.+.-..++..|.....++
T Consensus 4 ~l~~LpNig~~~e~~L~~vGI~t~~~L~~~Ga~~a~~~Lk~~~~~~~~~~ 53 (81)
T PF04994_consen 4 RLKDLPNIGPKSERMLAKVGIHTVEDLRELGAVEAYLRLKASGPSVCLNL 53 (81)
T ss_dssp -GCGSTT--HHHHHHHHHTT--SHHHHHHHHHHHHHHHHHHH-TT--HHH
T ss_pred chhhCCCCCHHHHHHHHHcCCCCHHHHHHhCHHHHHHHHHHHCCCCCHHH
Confidence 46789999999999999999999999999988887777765555555544
No 218
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=95.53 E-value=0.021 Score=65.31 Aligned_cols=50 Identities=26% Similarity=0.397 Sum_probs=45.6
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISA 659 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~ 659 (693)
..|..|||||+++|++|.+. |.|+++|..|+.++|.++ +|+++|++|.+.
T Consensus 569 s~L~~I~GIG~k~a~~Ll~~-Fgs~~~i~~As~eeL~~v---ig~k~A~~I~~~ 618 (621)
T PRK14671 569 TELTDIAGIGEKTAEKLLEH-FGSVEKVAKASLEELAAV---AGPKTAETIYRY 618 (621)
T ss_pred hhhhcCCCcCHHHHHHHHHH-cCCHHHHHhCCHHHHHHH---hCHHHHHHHHHH
Confidence 45679999999999999999 899999999999999985 999999999765
No 219
>KOG0388|consensus
Probab=95.46 E-value=0.079 Score=59.08 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=87.0
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
+++.+|+|..--+...-+-++|.-.++ .-.-+.|+....+|..+
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y------------------------------------~ylRLDGSsk~~dRrd~ 1086 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGY------------------------------------TYLRLDGSSKASDRRDV 1086 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhcc------------------------------------ceEEecCcchhhHHHHH
Confidence 899999999887777766666654222 24557788999999999
Q ss_pred HHHHhCCCC-eEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAGTL-QIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~i-~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
.+.|....+ -.|++|.....|||+-+.+.||.++.+ ..+.-=.|-+.||-|.|+...-.+|.+....
T Consensus 1087 vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSD----WNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1087 VRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSD----WNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred HhhccCCceEEEEEecccCcccccccccceEEEecCC----CCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 999997655 467799999999999999988888752 3444456888899999987777888887766
No 220
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=95.44 E-value=0.018 Score=55.82 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=41.4
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHh----cChHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIAR----ADAKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~----a~~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
..|..+.||||+.|..+.+. -+++++.. -+...|.+ ++|+|+|+|++|+-..+-.+
T Consensus 72 ~~L~~V~GIGpK~AL~iLs~--~~~~~l~~aI~~~D~~~L~k-vpGIGkKtAerIilELkdK~ 131 (197)
T PRK14603 72 ELLLGVSGVGPKLALALLSA--LPPALLARALLEGDARLLTS-ASGVGKKLAERIALELKGKV 131 (197)
T ss_pred HHHhCcCCcCHHHHHHHHcC--CCHHHHHHHHHhCCHHHHhh-CCCCCHHHHHHHHHHHHHHh
Confidence 44679999999999999986 14444443 34444444 89999999999998886543
No 221
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=95.44 E-value=0.021 Score=54.60 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=40.4
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcC---hHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARAD---AKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~---~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
..|..++||||+.|..+... -+++++..|- .......++|+|+|+|++|+-..+..+
T Consensus 73 ~~Li~VsGIGpK~Al~ILs~--~~~~el~~aI~~~D~~~L~~vpGIGkKtAeRIilELkdK~ 132 (183)
T PRK14601 73 EMLLKVNGIGANTAMAVCSS--LDVNSFYKALSLGDESVLKKVPGIGPKSAKRIIAELSDAK 132 (183)
T ss_pred HHHhccCCccHHHHHHHHcC--CCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 34568999999999988876 2555555443 223333478999999999998886554
No 222
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=95.43 E-value=0.02 Score=55.47 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=42.6
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcC---hHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARAD---AKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~---~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
..|..++||||+.|..+.+.. |+++|..|- .......++|+|+|+|++|+-..+..+
T Consensus 73 ~~Li~V~GIGpK~Al~iLs~~--~~~el~~aI~~~D~~~L~kvpGIGkKtAerIilELk~K~ 132 (195)
T PRK14604 73 ELLIGVSGVGPKAALNLLSSG--TPDELQLAIAGGDVARLARVPGIGKKTAERIVLELKGKI 132 (195)
T ss_pred HHHhCcCCcCHHHHHHHHcCC--CHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 446799999999999999862 555555443 233334479999999999999986554
No 223
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=95.38 E-value=0.013 Score=37.96 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=19.0
Q ss_pred CccchhhhhcCCCCCHHHHHHHHH
Q psy15878 601 RAPNLRALMDLPGVKIGRARQLLN 624 (693)
Q Consensus 601 ~~~el~~l~~i~gi~~~~a~~L~~ 624 (693)
++...-+|++|||||+++|..+..
T Consensus 6 ~pas~eeL~~lpGIG~~tA~~I~~ 29 (30)
T PF00633_consen 6 IPASIEELMKLPGIGPKTANAILS 29 (30)
T ss_dssp HTSSHHHHHTSTT-SHHHHHHHHH
T ss_pred CCCCHHHHHhCCCcCHHHHHHHHh
Confidence 567788899999999999988764
No 224
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=95.36 E-value=0.015 Score=67.05 Aligned_cols=111 Identities=22% Similarity=0.217 Sum_probs=70.3
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.++|+||-+.+....+.+.+.|.+.++. -..+.+.-...+=+.+
T Consensus 428 ~gqPvLvgT~sie~SE~ls~~L~~~~i~------------------------------------h~VLNAk~h~~EA~Ii 471 (822)
T COG0653 428 KGQPVLVGTVSIEKSELLSKLLRKAGIP------------------------------------HNVLNAKNHAREAEII 471 (822)
T ss_pred cCCCEEEcCcceecchhHHHHHHhcCCC------------------------------------ceeeccccHHHHHHHH
Confidence 8999999999999999999999875443 1122222223343444
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCCcEE---EEecC---cCCCccCCHHHH-HHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPAQRV---IIRDS---YVGRDFISLNMY-KQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~~~v---VI~~~---~~g~~~~s~~~~-~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
-.+-+.| -|-|||+.+.+|-||.--.- |..-+ -.|.+.--...+ .|--||+||.| .+|.+-.+.+-.
T Consensus 472 a~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG--DpG~S~F~lSle 545 (822)
T COG0653 472 AQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG--DPGSSRFYLSLE 545 (822)
T ss_pred hhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC--CcchhhhhhhhH
Confidence 4433333 57899999999999854321 11110 112222223334 49999999999 688877666544
No 225
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=95.16 E-value=0.019 Score=55.08 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=41.6
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHh----cChHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIAR----ADAKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~----a~~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
..|..++||||+.|..+.+. -|+++|.. -+..-| .++|+|+|+|++|+-..+..+
T Consensus 73 ~~LisV~GIGpK~Al~iLs~--~~~~~l~~aI~~~D~~~L--~vpGIGkKtAerIilELk~K~ 131 (186)
T PRK14600 73 RMLVKVSGVNYKTAMSILSK--LTPEQLFSAIVNEDKAAL--KVNGIGEKLINRIITELQYKV 131 (186)
T ss_pred HHHhCcCCcCHHHHHHHHcc--CCHHHHHHHHHcCCHhhe--ECCCCcHHHHHHHHHHHHHHh
Confidence 34679999999999999987 14544443 344445 489999999999998886554
No 226
>TIGR03491 RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.
Probab=95.00 E-value=0.028 Score=62.50 Aligned_cols=59 Identities=27% Similarity=0.348 Sum_probs=51.4
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFI 665 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~ 665 (693)
-+|..+|||+++++..|.++||+|+++|+.+++..+.. +++++.+++.+++..|+..+.
T Consensus 207 ~~lslv~gi~~~~~~~L~~~GI~ti~~La~~~~~~l~~-~~~~~~~~~~~l~~qA~a~~~ 265 (457)
T TIGR03491 207 GHLSLVPGIGPSRYRLLQELGIHTLEDLAAADPNDLED-FGEQGLGVAEQLVQQARAQLE 265 (457)
T ss_pred CCeeecCCCCHHHHHHHHHcCCCcHHHHhcCCcccccc-ccccCHHHHHHHHHHHHHHHc
Confidence 37888999999999999999999999999999776665 458899999999999976654
No 227
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=94.85 E-value=0.024 Score=48.88 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=34.2
Q ss_pred HHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhh
Q psy15878 403 VASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHN 451 (693)
Q Consensus 403 ~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~ 451 (693)
+++.|...|+++.+ ..+|++|+.++.+|++|..+++++.+....
T Consensus 2 A~~~L~~Lgald~~-----~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~ 45 (102)
T PF04408_consen 2 ALELLKSLGALDEN-----GNLTPLGRKMSQLPLDPRLAKMLLYGIQFG 45 (102)
T ss_dssp HHHHHHHTTSB-TT-----S-B-HHHHHHTTSSS-HHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCCCCC-----CCcCHHHHHHHHCCCchHhHhHhhhccccc
Confidence 67889999999753 379999999999999999999998765543
No 228
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=94.81 E-value=0.074 Score=59.83 Aligned_cols=94 Identities=16% Similarity=0.218 Sum_probs=74.4
Q ss_pred hhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH---------
Q psy15878 591 TDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLISAA--------- 660 (693)
Q Consensus 591 ~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a--------- 660 (693)
..+..||.|-+.... |.|.|+|.+...+|+++ =|+++.||-....+++.. +++++++.+++|+.++
T Consensus 433 aq~~e~l~hfvSr~A---mdI~GLG~k~i~~L~e~~lI~~~~Dly~Lt~~~l~~-l~~~~~ks~~nLl~aIe~sK~~~l~ 508 (667)
T COG0272 433 AQLKERLIHFVSRNA---LDIDGLGEKIIEQLFEKGLIKDIADLYTLTEEDLLS-LEGFGEKSAENLLNAIEKSKKQPLA 508 (667)
T ss_pred HHHhhheeeEecCCc---cCCCCcCHHHHHHHHHcCccCCHHHHHhCCHHHHhh-ccchhhhHHHHHHHHHHHhccCCHH
Confidence 356777888777544 67899999999999999 589999999999999999 8899999999999888
Q ss_pred ---------------HhhhhhhhhhHHHHHHHHHHHHhcCccc
Q psy15878 661 ---------------KLHFITKMDKVEAMKNLIQNLQKNYDNI 688 (693)
Q Consensus 661 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (693)
.+.+.-.|.+.+++...-.+.+..+|||
T Consensus 509 r~l~aLGIr~VG~~~Ak~La~~f~sl~~l~~a~~e~l~~i~gi 551 (667)
T COG0272 509 RFLYALGIRHVGETTAKSLARHFGTLEALLAASEEELASIPGI 551 (667)
T ss_pred HHHHHcCCchhhHHHHHHHHHHhhhHHHHHhcCHHHHhhccch
Confidence 1222225666677777767777777665
No 229
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.80 E-value=0.16 Score=46.53 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=53.4
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCC-CeEEEecchhhcccCCCCc---EEEEec-CcC-----------------C-Ccc--
Q psy15878 243 AYHHADLTAGERRLIEEAYLAGT-LQIICCTSTLAAGVNLPAQ---RVIIRD-SYV-----------------G-RDF-- 297 (693)
Q Consensus 243 ~~~h~~l~~~eR~~ve~~f~~g~-i~VLvaT~~l~~Gvnlp~~---~vVI~~-~~~-----------------g-~~~-- 297 (693)
..+.-+....+...+.+.|++.. ..||++|..+.+|||+|+. .|||.. |++ + ..+
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 34444555556788899998654 3799999889999999983 344442 221 0 111
Q ss_pred -----CCHHHHHHHhhccCCCCCCCCCcEEEE
Q psy15878 298 -----ISLNMYKQMVGRAGRTGLQESGESIML 324 (693)
Q Consensus 298 -----~s~~~~~Qr~GRaGR~g~d~~G~~i~l 324 (693)
.......|.+||+=|...| .|.++++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~D-~g~i~l~ 135 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGAND-YGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcCc-eEEEEEE
Confidence 1235678999999998854 6754443
No 230
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=94.78 E-value=0.04 Score=35.69 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=24.2
Q ss_pred CHHHHHhcChHHHHHHhcCCCHHHHHHHHH
Q psy15878 629 SLELIARADAKEMVAKIRHLPLRSARNLIS 658 (693)
Q Consensus 629 s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~ 658 (693)
|.+.+..++.++|.+ ++|+|+++|+.|++
T Consensus 1 ~~~g~~pas~eeL~~-lpGIG~~tA~~I~~ 29 (30)
T PF00633_consen 1 SLDGLIPASIEELMK-LPGIGPKTANAILS 29 (30)
T ss_dssp SHHHHHTSSHHHHHT-STT-SHHHHHHHHH
T ss_pred CCCCcCCCCHHHHHh-CCCcCHHHHHHHHh
Confidence 456788899999999 89999999999975
No 231
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=94.65 E-value=0.038 Score=46.56 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=36.6
Q ss_pred HHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhh
Q psy15878 403 VASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLL 449 (693)
Q Consensus 403 ~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~ 449 (693)
+++.|...|+++.+ ..+|++|+.++.+|++|..+++++.+..
T Consensus 2 A~~~L~~LgAld~~-----~~lT~lG~~m~~lPl~Prla~~Ll~a~~ 43 (92)
T smart00847 2 ALELLYELGALDDD-----GRLTPLGRKMAELPLDPRLAKMLLAAAE 43 (92)
T ss_pred HHHHHHHCCCcCCC-----CCcCHHHHHHHHCCCChHHHHHHHHHHh
Confidence 57788999999753 3799999999999999999999998764
No 232
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=94.39 E-value=0.047 Score=52.73 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=40.3
Q ss_pred hhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
..|..+.||||+.|.++.+. ....+.+............++|+|+|+|++|+-..+
T Consensus 73 ~~LisVnGIGpK~ALaiLs~~~~~~l~~aI~~~d~~~L~k~PGIGkKtAerivleLk 129 (201)
T COG0632 73 RLLISVNGIGPKLALAILSNLDPEELAQAIANEDVKALSKIPGIGKKTAERIVLELK 129 (201)
T ss_pred HHHHccCCccHHHHHHHHcCCCHHHHHHHHHhcChHhhhcCCCCCHHHHHHHHHHHh
Confidence 56789999999999999988 444433332223333333479999999999988874
No 233
>COG2251 Predicted nuclease (RecB family) [General function prediction only]
Probab=94.34 E-value=0.053 Score=57.61 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=48.4
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
-+|.=+|||++.+++.|.+.||+|+++||.++...+.... |.-...+.+...+|+..
T Consensus 225 ~~L~Lv~Gi~~~r~~~l~~~GI~Ti~~LA~~~~~~~~~~~-ga~~~~~~~l~~qa~~~ 281 (474)
T COG2251 225 DDLSLVPGITPSRYDVLEEVGITTIEDLADASLPILELVA-GALTALAAQLVLQARAR 281 (474)
T ss_pred cceeccCCCCHHHHHHHHHcCcchHHHHHhccccchhhhh-hhHHHHHHHHHHHHHhh
Confidence 4567799999999999999999999999999999998854 55467788888888654
No 234
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]
Probab=93.83 E-value=0.087 Score=48.66 Aligned_cols=49 Identities=16% Similarity=0.369 Sum_probs=39.7
Q ss_pred ccchhhhhcCCCCCHHHHHHHHHc-----CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHH
Q psy15878 602 APNLRALMDLPGVKIGRARQLLNA-----GYSSLELIARADAKEMVAKIRHLPLRSARNLISA 659 (693)
Q Consensus 602 ~~el~~l~~i~gi~~~~a~~L~~~-----g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~ 659 (693)
.+..-+|..+||||++.|.++.+. .|+|++||.+ ++|+|+++-+++..-
T Consensus 93 tAs~eeL~~lpgIG~~kA~aIi~yRe~~G~f~sv~dL~~---------v~GiG~~~~ekl~~~ 146 (149)
T COG1555 93 TASAEELQALPGIGPKKAQAIIDYREENGPFKSVDDLAK---------VKGIGPKTLEKLKDY 146 (149)
T ss_pred ccCHHHHHHCCCCCHHHHHHHHHHHHHcCCCCcHHHHHh---------ccCCCHHHHHHHHhh
Confidence 345567799999999999998764 3999999965 779999998887643
No 235
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=93.75 E-value=0.17 Score=57.01 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=47.5
Q ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 609 MDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 609 ~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
+.||.||.+.|+.|.+ .|.|++.|..|+.+++.. ++|+|.+.|++|++-..
T Consensus 514 LGIr~VG~~~Ak~La~-~f~sl~~l~~a~~e~l~~-i~giG~~vA~si~~ff~ 564 (667)
T COG0272 514 LGIRHVGETTAKSLAR-HFGTLEALLAASEEELAS-IPGIGEVVARSIIEFFA 564 (667)
T ss_pred cCCchhhHHHHHHHHH-HhhhHHHHHhcCHHHHhh-ccchhHHHHHHHHHHHc
Confidence 4899999999999999 699999999999999999 88999999999988764
No 236
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=93.53 E-value=0.071 Score=41.75 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=31.3
Q ss_pred cchhhhhcCCCCCHHHHHHHHHc-----CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHH
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNA-----GYSSLELIARADAKEMVAKIRHLPLRSARNLI 657 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~-----g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~ 657 (693)
...-+|.++||||+..|+++.+. +|.|++||.. ++|+|++..++|.
T Consensus 11 as~~eL~~lpgi~~~~A~~Iv~~R~~~G~f~s~~dL~~---------v~gi~~~~~~~l~ 61 (65)
T PF12836_consen 11 ASAEELQALPGIGPKQAKAIVEYREKNGPFKSLEDLKE---------VPGIGPKTYEKLK 61 (65)
T ss_dssp S-HHHHHTSTT--HHHHHHHHHHHHHH-S-SSGGGGGG---------STT--HHHHHHHC
T ss_pred CCHHHHHHcCCCCHHHHHHHHHHHHhCcCCCCHHHHhh---------CCCCCHHHHHHHH
Confidence 34568899999999999988754 7888888864 6688888877763
No 237
>KOG2841|consensus
Probab=93.29 E-value=0.14 Score=49.77 Aligned_cols=56 Identities=27% Similarity=0.297 Sum_probs=49.7
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
--|..||||+.+-|-.|... |-|++.|..|+.++|.. ++|+|+..|++|.+-..+-
T Consensus 195 ~~Lt~i~~VnKtda~~LL~~-FgsLq~~~~AS~~ele~-~~G~G~~kak~l~~~l~~p 250 (254)
T KOG2841|consen 195 GFLTTIPGVNKTDAQLLLQK-FGSLQQISNASEGELEQ-CPGLGPAKAKRLHKFLHQP 250 (254)
T ss_pred HHHHhCCCCCcccHHHHHHh-cccHHHHHhcCHhHHHh-CcCcCHHHHHHHHHHHhcc
Confidence 44669999999999999988 88999999999999999 6799999999998876543
No 238
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.09 E-value=0.4 Score=56.15 Aligned_cols=81 Identities=22% Similarity=0.237 Sum_probs=65.3
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.+++|.+||+.-|...++.+.+ .. ......++.+||+++..+|..+
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~--l~------------------------------~~~~i~v~ll~G~~~~~~r~~~ 356 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKK--LL------------------------------EPLGIRVALLTGSLKGKERREI 356 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHH--HH------------------------------hhcCcEEEEEcCCCCHHHHHHH
Confidence 778999999999999988888776 22 0011348999999999999999
Q ss_pred HHHHhCCCCeEEEecch-hhcccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTST-LAAGVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~-l~~Gvnlp~~~vVI~~ 290 (693)
.+...+|...|+|+|+. +...++++...+||.+
T Consensus 357 ~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVID 390 (681)
T PRK10917 357 LEAIASGEADIVIGTHALIQDDVEFHNLGLVIID 390 (681)
T ss_pred HHHHhCCCCCEEEchHHHhcccchhcccceEEEe
Confidence 99999999999999974 4456788888777654
No 239
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=93.08 E-value=0.4 Score=44.06 Aligned_cols=72 Identities=25% Similarity=0.426 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCC---eEEEecch--hhcccCCCCc---EEEEec-CcCCC------------------c-------c
Q psy15878 252 GERRLIEEAYLAGTL---QIICCTST--LAAGVNLPAQ---RVIIRD-SYVGR------------------D-------F 297 (693)
Q Consensus 252 ~eR~~ve~~f~~g~i---~VLvaT~~--l~~Gvnlp~~---~vVI~~-~~~g~------------------~-------~ 297 (693)
.+...+.+.|++..- .||+++.- +.+|||+|+. .|||.. |++.. . |
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345778888987543 68888887 9999999983 455542 22110 0 1
Q ss_pred CCHHHHHHHhhccCCCCCCCCCcEEEE
Q psy15878 298 ISLNMYKQMVGRAGRTGLQESGESIML 324 (693)
Q Consensus 298 ~s~~~~~Qr~GRaGR~g~d~~G~~i~l 324 (693)
.-.....|.+||+=|...| .|.++++
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D-~g~i~l~ 136 (142)
T smart00491 111 DAMRALAQAIGRAIRHKND-YGVVVLL 136 (142)
T ss_pred HHHHHHHHHhCccccCccc-eEEEEEE
Confidence 1234568999999999854 6754443
No 240
>PRK03352 DNA polymerase IV; Validated
Probab=93.05 E-value=0.14 Score=54.71 Aligned_cols=52 Identities=27% Similarity=0.264 Sum_probs=45.3
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++-.+||||++.+.+|.+.||+|+.||+..++..|.+. ||.+.++.+..-|
T Consensus 177 lpl~~l~gig~~~~~~L~~~Gi~ti~dl~~l~~~~L~~~---fG~~~~~~l~~~a 228 (346)
T PRK03352 177 RPTDALWGVGPKTAKRLAALGITTVADLAAADPAELAAT---FGPTTGPWLLLLA 228 (346)
T ss_pred CCHHHcCCCCHHHHHHHHHcCCccHHHHhcCCHHHHHHH---hChHHHHHHHHHh
Confidence 688899999999999999999999999999999988885 7766676666665
No 241
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.98 E-value=0.51 Score=53.14 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=62.2
Q ss_pred HHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHH
Q psy15878 174 HLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGE 253 (693)
Q Consensus 174 ~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~e 253 (693)
..+..++++||.+|++.-+..+++.|.+ .+ ...++.+||+++..+
T Consensus 20 ~~l~~g~~vLvlvP~i~L~~Q~~~~l~~--~f---------------------------------~~~v~vlhs~~~~~e 64 (505)
T TIGR00595 20 KVLALGKSVLVLVPEIALTPQMIQRFKY--RF---------------------------------GSQVAVLHSGLSDSE 64 (505)
T ss_pred HHHHcCCeEEEEeCcHHHHHHHHHHHHH--Hh---------------------------------CCcEEEEECCCCHHH
Confidence 3344788999999999999988888876 21 123889999999999
Q ss_pred HHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEe
Q psy15878 254 RRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR 289 (693)
Q Consensus 254 R~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~ 289 (693)
|.......++|..+|+|+|..+-. ..+++..+||-
T Consensus 65 r~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 65 KLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred HHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 999999999999999999976433 34556555554
No 242
>PRK03858 DNA polymerase IV; Validated
Probab=92.96 E-value=0.2 Score=54.73 Aligned_cols=52 Identities=23% Similarity=0.194 Sum_probs=45.2
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++.+.+|.+.||+|+.||+..++..|.+. ||...++.+.+-|
T Consensus 173 lpl~~l~Gig~~~~~~L~~~Gi~t~~dl~~l~~~~L~~~---fG~~~~~~l~~~a 224 (396)
T PRK03858 173 LPVRRLWGVGPVTAAKLRAHGITTVGDVAELPESALVSL---LGPAAGRHLHALA 224 (396)
T ss_pred CChhhcCCCCHHHHHHHHHhCCCcHHHHhcCCHHHHHHH---hCcHHHHHHHHHh
Confidence 578899999999999999999999999999999988885 6766677776655
No 243
>cd01703 PolY_Pol_iota DNA Polymerase iota. Pol iota, also called Rad30B, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol iota is thought to be one of the least efficient polymerases, particularly when opposite pyrimidines; it can incorporate the correct nucleotide opposite a purine much more efficiently than opposite a pyrimidine, and prefers to insert guanosine instead of adenosine opposite thymidine. Pol iota is believed to use Hoogsteen rather than Watson-Crick base pairing, which may explain the varying efficiency for different template nucleotides.
Probab=92.88 E-value=0.15 Score=55.11 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=44.3
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcC---------------hHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARAD---------------AKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~---------------~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++++.+|.+.||.|+.||+..+ ...|.+ .||.+.+..+.+.|
T Consensus 172 lpv~~l~GiG~~~~~kL~~~GI~tigdl~~~~~~~~~~~~~~~~~~s~~~L~~---~fG~~~g~~l~~~a 238 (379)
T cd01703 172 HDLRKIPGIGYKTAAKLEAHGISSVRDLQEFSNRNRQTVGAAPSLLELLLMVK---EFGEGIGQRIWKLL 238 (379)
T ss_pred CCccccCCcCHHHHHHHHHcCCCcHHHHHhCCcccccccccccccccHHHHHH---HHCHHHHHHHHHHH
Confidence 56789999999999999999999999999988 666666 37877788887766
No 244
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.86 E-value=0.51 Score=55.22 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=60.4
Q ss_pred hcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHH
Q psy15878 177 QGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRL 256 (693)
Q Consensus 177 ~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ 256 (693)
..++++||.+|++.-+..+.+.+.+ .+ ...++.+||+++..+|..
T Consensus 188 ~~g~~vLvLvPt~~L~~Q~~~~l~~--~f---------------------------------g~~v~~~~s~~s~~~r~~ 232 (679)
T PRK05580 188 AQGKQALVLVPEIALTPQMLARFRA--RF---------------------------------GAPVAVLHSGLSDGERLD 232 (679)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHH--Hh---------------------------------CCCEEEEECCCCHHHHHH
Confidence 3688999999999999888887765 11 123889999999999999
Q ss_pred HHHHHhCCCCeEEEecchhhcccCCCCcEEEEe
Q psy15878 257 IEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR 289 (693)
Q Consensus 257 ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~ 289 (693)
......+|..+|+|+|..... +.+++...||.
T Consensus 233 ~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVv 264 (679)
T PRK05580 233 EWRKAKRGEAKVVIGARSALF-LPFKNLGLIIV 264 (679)
T ss_pred HHHHHHcCCCCEEEeccHHhc-ccccCCCEEEE
Confidence 999999999999999975432 44556555554
No 245
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=92.82 E-value=0.15 Score=49.52 Aligned_cols=70 Identities=19% Similarity=0.244 Sum_probs=52.3
Q ss_pred HHHHHHHcCCCCHHHHHhcChHHHHHHhcC--CCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCccccccc
Q psy15878 618 RARQLLNAGYSSLELIARADAKEMVAKIRH--LPLRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVHNT 692 (693)
Q Consensus 618 ~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~--~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (693)
..+.|++. |.|+++++.|++++|.+.++. |....|++|++-++.++. .|.. ++-+ ..+.|-.+|||=+-|
T Consensus 50 at~~Lf~~-~~t~e~l~~a~~~~l~~~I~~iGlyr~KAk~I~~~~~~l~e-~~~g--~vP~-~~~eL~~LPGVGrKT 121 (211)
T COG0177 50 ATPALFKR-YPTPEDLLNADEEELEELIKSIGLYRNKAKNIKELARILLE-KFGG--EVPD-TREELLSLPGVGRKT 121 (211)
T ss_pred HHHHHHHH-cCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-HcCC--CCCc-hHHHHHhCCCcchHH
Confidence 35678888 889999999999999999875 668999999999997766 2222 2222 334455789987765
No 246
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=92.82 E-value=0.59 Score=41.69 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHcCCCCHHHHHhcChHHHHH--Hh--cCCCHHHHHHHHHHH
Q psy15878 612 PGVKIGRARQLLNAGYSSLELIARADAKEMVA--KI--RHLPLRSARNLISAA 660 (693)
Q Consensus 612 ~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~--~~--~~~~~~~a~~i~~~a 660 (693)
||+|++.+.+|-++||.|.++|.++.+....+ .. -|+..+...+....|
T Consensus 1 pgi~~~~~~~L~~~GI~t~~~Ll~~~~~~~~r~~La~~~~i~~~~l~~w~~~A 53 (122)
T PF14229_consen 1 PGIGPKEAAKLKAAGIKTTGDLLEAGDTPLGRKALAKKLGISERNLLKWVNQA 53 (122)
T ss_pred CCCCHHHHHHHHHcCCCcHHHHHHcCCCHHHHHHHHHhcCCCHHHHHHHHhHH
Confidence 89999999999999999999999998877666 22 145555555555555
No 247
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=92.70 E-value=0.35 Score=53.35 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=53.9
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFI 665 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~ 665 (693)
-.+++.+++....|..|.+.||.|+++++.+++++|.. ++|+.+.++..+.+.|+..+.
T Consensus 356 ~~f~~~~~ide~~~~~l~~~g~~~~e~~~~~~~~el~~-i~~~~ee~~~~l~~~~~~~~~ 414 (470)
T PRK09202 356 DLFMEALDIDEEIAQLLVEEGFSSLEELAYVPVEELLE-IEGFDEETVEELRERAKEALE 414 (470)
T ss_pred HHHhhhccccHHHHHHHHHcCcccHHHHhcCCHHHHhh-ccCCCHHHHHHHHHHHHHHhh
Confidence 44578889999999999999999999999999999995 889999999999999987766
No 248
>PRK01216 DNA polymerase IV; Validated
Probab=92.31 E-value=0.24 Score=53.01 Aligned_cols=52 Identities=25% Similarity=0.266 Sum_probs=45.0
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++.+.+|.+.||.|+.||+..+...|.+. ||...+..+.+.|
T Consensus 178 LPi~~l~giG~~~~~~L~~~Gi~TigdL~~~~~~~L~~r---fG~~~~~~L~~~a 229 (351)
T PRK01216 178 LDIADIPGIGDITAEKLKKLGVNKLVDTLRIEFDELKGI---IGEAKAKYLFSLA 229 (351)
T ss_pred CCcccccCCCHHHHHHHHHcCCCcHHHHhcCCHHHHHHH---HCHHHHHHHHHHh
Confidence 578899999999999999999999999999998888884 7776676776655
No 249
>cd01701 PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesion synthesis (TLS) polymerase found in eukaryotes. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Rev1 has both structural and enzymatic roles. Structurally, it is believed to interact with other nonclassical polymerases and replication machinery to act as a scaffold. Enzymatically, it catalyzes the specific insertion of dCMP opposite abasic sites. Rev1 interacts with the Rev7 subunit of the B-family TLS polymerase Pol zeta (Rev3/Rev7). Rev1 is known to actively promote the introduction of mutations, potentially making it a significant target for cancer treatment.
Probab=92.23 E-value=0.21 Score=54.60 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=45.9
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcC--hHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARAD--AKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~--~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++.+.+|.+.||.|+.||+..+ +..|.+. ||.+.+..+...|
T Consensus 222 lPv~~l~GIG~~~~~~L~~~Gi~t~~dl~~~~~~~~~L~~~---fG~~~g~~L~~~a 275 (404)
T cd01701 222 LKVGDLPGVGSSLAEKLVKLFGDTCGGLELRSKTKEKLQKV---LGPKTGEKLYDYC 275 (404)
T ss_pred CCHhHhCCCCHHHHHHHHHcCCcchHHHHhCcccHHHHHHH---HCHHHHHHHHHHh
Confidence 57889999999999999999999999999998 7787774 7877788887777
No 250
>COG1623 Predicted nucleic-acid-binding protein (contains the HHH domain) [General function prediction only]
Probab=91.98 E-value=0.24 Score=49.54 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=51.4
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
--|-.||-+....+..|.++ |.++.+|.+|+.+++.+ ++|+|+.-|+.|.++.+++
T Consensus 293 R~l~kIpRlp~~iv~nlV~~-F~~l~~il~As~edL~~-VeGIGe~rAr~i~~Gl~rL 348 (349)
T COG1623 293 RLLNKIPRLPFAIVENLVRA-FGTLDGILEASAEDLDA-VEGIGEARARAIKEGLSRL 348 (349)
T ss_pred HHHhcCcCccHHHHHHHHHH-HhhHHHHHHhcHhHHhh-hcchhHHHHHHHHHhHhhc
Confidence 34668999999999999999 99999999999999999 8899999999999998764
No 251
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=91.81 E-value=0.097 Score=34.50 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=18.0
Q ss_pred hhhhcCCCCCHHHHHHHHHcCC
Q psy15878 606 RALMDLPGVKIGRARQLLNAGY 627 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~ 627 (693)
+++.+++|||++++++|.+.||
T Consensus 11 lpi~~~~GIG~kt~~kL~~~GI 32 (32)
T PF11798_consen 11 LPIRKFWGIGKKTAKKLNKLGI 32 (32)
T ss_dssp SBGGGSTTS-HHHHHHHHCTT-
T ss_pred CCHHhhCCccHHHHHHHHHccC
Confidence 4778999999999999998886
No 252
>PRK14873 primosome assembly protein PriA; Provisional
Probab=91.73 E-value=0.6 Score=54.12 Aligned_cols=88 Identities=15% Similarity=0.075 Sum_probs=65.5
Q ss_pred CChhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhce
Q psy15878 167 SGPDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGV 242 (693)
Q Consensus 167 ~~~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv 242 (693)
.+.+...+++. .|+++||.+|....+..+...|.. .++ ...|
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~--~f~--------------------------------~~~v 217 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRA--LLG--------------------------------AGDV 217 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHH--HcC--------------------------------CCcE
Confidence 33444444443 899999999999999999988876 220 0228
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEe
Q psy15878 243 AYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR 289 (693)
Q Consensus 243 ~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~ 289 (693)
+.+|++++..+|.......++|..+|+|.|-.+. =.-+++...||-
T Consensus 218 ~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-FaP~~~LgLIIv 263 (665)
T PRK14873 218 AVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-FAPVEDLGLVAI 263 (665)
T ss_pred EEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-EeccCCCCEEEE
Confidence 9999999999999999999999999999997532 233444444444
No 253
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=91.71 E-value=0.44 Score=53.63 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=43.8
Q ss_pred hhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 608 LMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 608 l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
=+.||+||.+.|+. .|.|+++|..|+.+++.+ ++|+|+++|++|++...
T Consensus 493 aLGI~~vG~~~ak~----~~~~i~~l~~a~~e~l~~-i~gIG~~~a~si~~~f~ 541 (562)
T PRK08097 493 ALGIPLPQAALNAL----DDRSWQQLLSRSEQQWQQ-LPGIGEGRARQLIAFLQ 541 (562)
T ss_pred HcCCccHHHHHHHH----hcCCHHHHHcCCHHHHhc-CCCchHHHHHHHHHHHc
Confidence 34799999998886 689999999999999887 78999999999998874
No 254
>TIGR03252 uncharacterized HhH-GPD family protein. This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).
Probab=91.67 E-value=0.76 Score=43.44 Aligned_cols=73 Identities=18% Similarity=0.129 Sum_probs=55.5
Q ss_pred HHHHH-cCCCCHHHHHhcChHHHHHHhc------CCCHHHHHHHHHHHHhhhhhhhhhHHHHH-------HHHHHHHhcC
Q psy15878 620 RQLLN-AGYSSLELIARADAKEMVAKIR------HLPLRSARNLISAAKLHFITKMDKVEAMK-------NLIQNLQKNY 685 (693)
Q Consensus 620 ~~L~~-~g~~s~~~l~~a~~~~l~~~~~------~~~~~~a~~i~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~ 685 (693)
..|++ .|-.|+++|++++.+++...++ ||....|+.|++-|+.++..--.++..+. .++.+.|..+
T Consensus 41 ~~L~~~~g~~tp~~La~a~~eeL~~lI~~~pal~Gfy~~KAk~Lk~~a~~iie~y~G~v~~L~~~~~p~t~~lre~Ll~L 120 (177)
T TIGR03252 41 HKIARRMGSLDAEDIAKYDPQAFVALFSERPAVHRFPGSMAKRVQALAQYVVDTYDGDATAVWTEGDPDGKELLRRLKAL 120 (177)
T ss_pred HHHHHHhCCCCHHHHHcCCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHhCCChhhhhcccCCCcHHHHHHHHcC
Confidence 46765 5778999999999999999993 78889999999999887652223444443 3446778899
Q ss_pred ccccccc
Q psy15878 686 DNIVHNT 692 (693)
Q Consensus 686 ~~~~~~~ 692 (693)
|||=+-|
T Consensus 121 pGVG~KT 127 (177)
T TIGR03252 121 PGFGKQK 127 (177)
T ss_pred CCCCHHH
Confidence 9987654
No 255
>PRK03348 DNA polymerase IV; Provisional
Probab=91.65 E-value=0.27 Score=54.61 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=45.6
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..|||||++.+.+|.+.||+|+.||+.++..+|.+. ||......+.+.|
T Consensus 180 LPv~~L~GIG~~t~~~L~~lGI~TigDLa~l~~~~L~~~---fG~~~g~~L~~~a 231 (454)
T PRK03348 180 LPVRRLWGIGPVTEEKLHRLGIETIGDLAALSEAEVANL---LGATVGPALHRLA 231 (454)
T ss_pred CCccccCCCCHHHHHHHHHcCCccHHHHhcCCHHHHHHH---HCHHHHHHHHHHH
Confidence 578899999999999999999999999999999998884 6776777776665
No 256
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=91.24 E-value=0.48 Score=54.69 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=44.9
Q ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHHh------cChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 609 MDLPGVKIGRARQLLNAGYSSLELIAR------ADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 609 ~~i~gi~~~~a~~L~~~g~~s~~~l~~------a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+.||+||.+.|+.|.++.|.|++.+.. ++.++|.+ ++|+|+++|++|.+..
T Consensus 505 LGI~~vG~~~ak~La~~~f~~~~~l~~~~~~~~~~~e~l~~-i~giG~~~a~si~~ff 561 (669)
T PRK14350 505 MGIKDLGENTILLLINNNLNSFDKISTLCQDREFALSKLLK-IKGIGEKIALNIIEAF 561 (669)
T ss_pred cCCCchhHHHHHHHHHHhhCCHHHHHhhhhccCCCHHHHhh-CCCccHHHHHHHHHHH
Confidence 379999999999999667999999986 57778887 8899999999999776
No 257
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=91.20 E-value=0.4 Score=54.37 Aligned_cols=34 Identities=35% Similarity=0.588 Sum_probs=31.3
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKE 640 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~ 640 (693)
..|.+|||||++|.++|++. |.|+++|.+|+.++
T Consensus 541 S~Ld~I~GIG~kr~~~LL~~-Fgs~~~i~~As~ee 574 (574)
T TIGR00194 541 SPLLKIPGVGEKRVQKLLKY-FGSLKGIKKASVEE 574 (574)
T ss_pred HHHhcCCCCCHHHHHHHHHH-cCCHHHHHhCCccC
Confidence 56779999999999999999 99999999999764
No 258
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1.
Probab=90.79 E-value=0.22 Score=31.03 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=16.5
Q ss_pred hhhcCCCCCHHHHHHHHHc
Q psy15878 607 ALMDLPGVKIGRARQLLNA 625 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~ 625 (693)
.|+++||||+++|+++.+.
T Consensus 2 ~L~~i~GiG~k~A~~il~~ 20 (26)
T smart00278 2 ELLKVPGIGPKTAEKILEA 20 (26)
T ss_pred hhhhCCCCCHHHHHHHHHh
Confidence 4789999999999999874
No 259
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=90.58 E-value=0.53 Score=55.39 Aligned_cols=49 Identities=12% Similarity=0.339 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 611 LPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 611 i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
+||||+++|++++++ |-.+++-|.+ +|+.|.+ ++|+|++.+++|.++-+
T Consensus 89 ~~GIG~~~A~~iv~~fg~~~~~~i~~-~~~~L~~-v~gi~~~~~~~i~~~~~ 138 (720)
T TIGR01448 89 IKGVGKKLAQRIVKTFGEAAFDVLDD-DPEKLLE-VPGISKANLEKFVSQWS 138 (720)
T ss_pred CCCcCHHHHHHHHHHhCHhHHHHHHh-CHHHHhc-CCCCCHHHHHHHHHHHH
Confidence 899999999999999 9999999976 4888777 78999999999999874
No 260
>KOG1002|consensus
Probab=90.52 E-value=1.9 Score=46.70 Aligned_cols=83 Identities=10% Similarity=0.093 Sum_probs=64.2
Q ss_pred eEEEcCCCCHHHHHHHHHHHhCCC-Ce-EEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCC
Q psy15878 242 VAYHHADLTAGERRLIEEAYLAGT-LQ-IICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESG 319 (693)
Q Consensus 242 v~~~h~~l~~~eR~~ve~~f~~g~-i~-VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G 319 (693)
+.-+-|+|++..|....+.|++.- .+ .||+-......+|+-....|+.-+ .|.+++--+|-..|.-|-|+-.+-
T Consensus 665 cVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD----PWWNpaVe~Qa~DRiHRIGQ~rPv 740 (791)
T KOG1002|consen 665 CVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD----PWWNPAVEWQAQDRIHRIGQYRPV 740 (791)
T ss_pred EEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec----ccccHHHHhhhhhhHHhhcCccce
Confidence 445779999999999999999753 33 345556666668888877777655 277888888888888888877788
Q ss_pred cEEEEeccc
Q psy15878 320 ESIMLCKTM 328 (693)
Q Consensus 320 ~~i~l~~~~ 328 (693)
.++.+|-++
T Consensus 741 kvvrf~iEn 749 (791)
T KOG1002|consen 741 KVVRFCIEN 749 (791)
T ss_pred eEEEeehhc
Confidence 999998766
No 261
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=90.38 E-value=1.1 Score=52.23 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=64.2
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.+++|-+||+.-|+..++.+.+ ..+ .....++.+||+++..+|..+
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~--l~~------------------------------~~gi~v~lltg~~~~~~r~~~ 330 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRN--LLA------------------------------PLGIEVALLTGSLKGKRRKEL 330 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHH--Hhc------------------------------ccCcEEEEEecCCCHHHHHHH
Confidence 788999999999998888887765 220 011348999999999999999
Q ss_pred HHHHhCCCCeEEEecchhhc-ccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTSTLAA-GVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~-Gvnlp~~~vVI~~ 290 (693)
.+...+|...|+|+|..+-. .+++....+||-+
T Consensus 331 ~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVID 364 (630)
T TIGR00643 331 LETIASGQIHLVVGTHALIQEKVEFKRLALVIID 364 (630)
T ss_pred HHHHhCCCCCEEEecHHHHhccccccccceEEEe
Confidence 99999999999999976544 5777777766654
No 262
>cd00424 PolY Y-family of DNA polymerases. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Most TLS polymerases are members of the Y-family, including Pol eta, Pol kappa/IV, Pol iota, Rev1, and Pol V, which is found exclusively in bacteria. In eukaryotes, the B-family polymerase Pol zeta also functions as a TLS polymerase. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in ord
Probab=90.14 E-value=0.67 Score=49.51 Aligned_cols=52 Identities=25% Similarity=0.256 Sum_probs=41.7
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++++.+|.+.|++|+.||+..++..+.... || +.+..+...|
T Consensus 173 lpi~~l~giG~~~~~~L~~~Gi~ti~dl~~~~~~~~l~~~--fg-~~~~~l~~~a 224 (343)
T cd00424 173 LPLTDLPGIGAVTAKRLEAVGINPIGDLLAASPDALLALW--GG-VSGERLWYAL 224 (343)
T ss_pred CChhhcCCCCHHHHHHHHHcCCCcHHHHhcCCHHHHHHHH--hh-HHHHHHHHHh
Confidence 5777899999999999999999999999999844444433 55 4577777777
No 263
>PRK02406 DNA polymerase IV; Validated
Probab=90.03 E-value=0.69 Score=49.42 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=43.4
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++++.+|.+.||.|+.||+..++..|.+. ||. ....+...|
T Consensus 168 lpi~~l~giG~~~~~~L~~~Gi~ti~dl~~l~~~~L~~~---fG~-~~~~l~~~a 218 (343)
T PRK02406 168 LPVEKIPGVGKVTAEKLHALGIYTCADLQKYDLAELIRH---FGK-FGRRLYERA 218 (343)
T ss_pred CCcchhcCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHH---HhH-HHHHHHHHh
Confidence 578899999999999999999999999999999998885 553 456666666
No 264
>cd01702 PolY_Pol_eta DNA Polymerase eta. Pol eta, also called Rad30A, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Unlike other Y-family members, Pol eta can efficiently and accurately replicate DNA past UV-induced lesions. Its activity is initiated by two simultaneous interactions: the PIP box in pol eta interacting with PCNA, and the UBZ (ubiquitin-binding zinc finger) in pol eta interacting with monoubiquitin attached to PCNA. Pol eta is more efficient in copying damaged DNA than undamaged DNA and seems to recognize when a lesion has been passed, facilitating a lesion-dependent dissociation from the DNA.
Probab=89.92 E-value=0.47 Score=50.89 Aligned_cols=52 Identities=8% Similarity=0.035 Sum_probs=43.2
Q ss_pred hhhhcCCCCCHHHHHHH-HHcCCCCHHHHHhc--ChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQL-LNAGYSSLELIARA--DAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L-~~~g~~s~~~l~~a--~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++.++.| ...|+.|+.||+.. ++..|.+. ||.+.++.+...|
T Consensus 182 lpv~~l~GiG~~~~~~ll~~~Gi~ti~dl~~~~~~~~~L~~~---fG~~~g~~l~~~a 236 (359)
T cd01702 182 LPITSIRGLGGKLGEEIIDLLGLPTEGDVAGFRSSESDLQEH---FGEKLGEWLYNLL 236 (359)
T ss_pred CcHHHhCCcCHHHHHHHHHHcCCcCHHHHHhccCCHHHHHHH---HHHHHHHHHHHHh
Confidence 47889999999998776 55699999999999 88888874 7777778887776
No 265
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.50 E-value=0.75 Score=53.38 Aligned_cols=89 Identities=18% Similarity=0.147 Sum_probs=66.5
Q ss_pred CCCChhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhh
Q psy15878 165 TGSGPDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILY 240 (693)
Q Consensus 165 ~~~~~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~ 240 (693)
.+.+.+...+++. .|+++||-+|.....-.+...+.. .+ ..
T Consensus 227 GSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~--rF---------------------------------g~ 271 (730)
T COG1198 227 GSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKA--RF---------------------------------GA 271 (730)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHH--Hh---------------------------------CC
Confidence 3344455555554 889999999999888888777766 22 13
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEe
Q psy15878 241 GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR 289 (693)
Q Consensus 241 gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~ 289 (693)
.|+.+||+|++.+|..+....++|+.+|+|.|-.+ .=.-+++..+||-
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA-lF~Pf~~LGLIIv 319 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA-LFLPFKNLGLIIV 319 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEechh-hcCchhhccEEEE
Confidence 48999999999999999999999999999999652 2233455556654
No 266
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=89.34 E-value=1.4 Score=53.25 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=63.1
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.+++|.+||+.-|...++.+.+ ... ..+..+..++++.+..++..+
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~--~~~------------------------------~~~i~v~~Lsg~~~~~e~~~~ 546 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKE--RFA------------------------------NFPVTIELLSRFRSAKEQNEI 546 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHH--Hhc------------------------------cCCcEEEEEeccccHHHHHHH
Confidence 678899999999988888887765 220 011347889999999999999
Q ss_pred HHHHhCCCCeEEEecchh-hcccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTSTL-AAGVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l-~~Gvnlp~~~vVI~~ 290 (693)
.+.+++|..+|+|+|..+ ...+.+....+||-+
T Consensus 547 ~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 547 LKELASGKIDILIGTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred HHHHHcCCceEEEchHHHhhCCCCcccCCEEEee
Confidence 999999999999999744 445778887766654
No 267
>KOG2340|consensus
Probab=89.19 E-value=1.7 Score=47.55 Aligned_cols=114 Identities=8% Similarity=0.033 Sum_probs=70.1
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
....+||+.|+--+-.++-.++.+.... ....|.=-+...-...
T Consensus 551 t~s~~LiyIPSYfDFVRvRNy~K~e~i~------------------------------------F~~i~EYssk~~vsRA 594 (698)
T KOG2340|consen 551 TESGILIYIPSYFDFVRVRNYMKKEEIS------------------------------------FVMINEYSSKSKVSRA 594 (698)
T ss_pred ccCceEEEecchhhHHHHHHHhhhhhcc------------------------------------hHHHhhhhhHhhhhHH
Confidence 3456899999988888888777762211 0001111122222344
Q ss_pred HHHHhCCCCeEEEecchh--hcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCC--CCCCCcEEEEeccc
Q psy15878 258 EEAYLAGTLQIICCTSTL--AAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTG--LQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l--~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g--~d~~G~~i~l~~~~ 328 (693)
-+.|-.|...||+-|--+ =+--++.+++-||.+..+. .|-=.+++..|.+|+--.| ....-.|.++++.-
T Consensus 595 R~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~-~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKy 668 (698)
T KOG2340|consen 595 RELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPN-NPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKY 668 (698)
T ss_pred HHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCC-CcHHHHHHHhhhhhhhccCCccccceEEEEEeech
Confidence 567888888999988643 3456788888888775322 2444678899999976433 22345666666665
No 268
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=88.85 E-value=0.23 Score=50.53 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=51.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHH--HHhchhc---cCCCCcccEEEEeccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSK--LIGSLIQ---ENRIDEIGLIVIDEFH 75 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~--Ll~~l~~---~~~l~~i~lvVvDE~H 75 (693)
||..-++++.++.+.+|+.|+...++... ...+..-.++|+.+|...+.. |-+.+.. ....+.+.++||||++
T Consensus 130 LA~RD~~~~~~~y~~LGlsv~~~~~~~~~--~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 130 LAKRDAEEMRPFYEFLGLSVGIITSDMSS--EERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEETTTEH--HHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHH
T ss_pred HhhccHHHHHHHHHHhhhccccCccccCH--HHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccc
Confidence 45667889999999999999998876542 111111357899999998753 2233221 1124789999999999
Q ss_pred cc-CCCCCh
Q psy15878 76 ML-NEPQRG 83 (693)
Q Consensus 76 ~l-~d~~rg 83 (693)
.+ .|..+.
T Consensus 208 s~LiDea~~ 216 (266)
T PF07517_consen 208 SILIDEART 216 (266)
T ss_dssp HHTTTGCCS
T ss_pred eEEEecCcc
Confidence 43 454443
No 269
>PF13871 Helicase_C_4: Helicase_C-like
Probab=88.77 E-value=1.2 Score=45.62 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=45.7
Q ss_pred HHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCc----CCCccCCHHHHHHHhhccCCCCCC
Q psy15878 256 LIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY----VGRDFISLNMYKQMVGRAGRTGLQ 316 (693)
Q Consensus 256 ~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~----~g~~~~s~~~~~Qr~GRaGR~g~d 316 (693)
..-++|.+|..+|+|.|...+.|+.+-+..-+-+... .-..|.|....+|..||+-|.++-
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 3456899999999999999999999886432222100 001378999999999999999964
No 270
>KOG1015|consensus
Probab=88.43 E-value=1.2 Score=51.89 Aligned_cols=131 Identities=18% Similarity=0.083 Sum_probs=82.7
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhc--eEEEcCCCCHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYG--VAYHHADLTAGERR 255 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~g--v~~~h~~l~~~eR~ 255 (693)
-|.++|||..|.....-+-..|.-.... ...+ .....+.+ ..| +...| ..-+.|..+...|+
T Consensus 1141 IGDKlLVFSQSL~SLdLIe~fLe~v~r~-gk~~--~d~~~~~~-----~eG--------kW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1141 IGDKLLVFSQSLISLDLIEDFLELVSRE-GKED--KDKPLIYK-----GEG--------KWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred hcceeEEeecccchhHHHHHHHHhhccc-Cccc--cccccccc-----ccc--------ceecCCceEEecCcccHHHHH
Confidence 6889999998887766666655431000 0000 00000000 001 11123 33456899999999
Q ss_pred HHHHHHhC----CCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 256 LIEEAYLA----GTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 256 ~ve~~f~~----g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
.+.+.|.+ ...-.||+|...+.|||+-+.+-||.++. ..+++-=.|-+=|+-|.|+..+-.+|.|....
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDa----sWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDA----SWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEec----ccCCccchHHHHHHHhhcCcCceeehhhhhcc
Confidence 99999986 23458999999999999987554444432 23445557778899999988888888877655
No 271
>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional
Probab=88.32 E-value=0.5 Score=46.41 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=37.1
Q ss_pred chhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHH
Q psy15878 604 NLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAK 644 (693)
Q Consensus 604 el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~ 644 (693)
+--+|.+|+||||..+..|.++|+.++++|+.++++++..+
T Consensus 156 ~aDDL~~I~GIGp~~a~~L~eaGi~tfaQIAa~t~a~ia~i 196 (221)
T PRK12278 156 GADDLTKITGVGPALAKKLNEAGVTTFAQIAALTDADIAKI 196 (221)
T ss_pred CcchheeccccChHHHHHHHHcCCCCHHHhhCCChhhhhhh
Confidence 34678899999999999999999999999999999977764
No 272
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=88.22 E-value=1.1 Score=52.70 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=56.9
Q ss_pred hhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcC
Q psy15878 170 DAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHA 247 (693)
Q Consensus 170 ~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~ 247 (693)
-.+..+.. .++++++.+||..-+.++++.|.+ +. +... +...-+. +||
T Consensus 114 g~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~--~~------------------e~~~---------~~~~~~~-yh~ 163 (1187)
T COG1110 114 GLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKK--FA------------------EDAG---------SLDVLVV-YHS 163 (1187)
T ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHH--HH------------------hhcC---------Ccceeee-ecc
Confidence 33444444 789999999999999999998887 22 0000 0111133 999
Q ss_pred CCCHHHHHHHHHHHhCCCCeEEEecchh
Q psy15878 248 DLTAGERRLIEEAYLAGTLQIICCTSTL 275 (693)
Q Consensus 248 ~l~~~eR~~ve~~f~~g~i~VLvaT~~l 275 (693)
.|+..+++.+.+.|.+|..+|+|+|+.+
T Consensus 164 ~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 164 ALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred ccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 9999999999999999999999999754
No 273
>cd03586 PolY_Pol_IV_kappa DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a
Probab=87.95 E-value=1.2 Score=47.34 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=43.1
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++.+.+|...|++|+.||+..++..|.+. +| +.+..+...+
T Consensus 171 lpl~~l~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~---~g-~~~~~l~~~~ 221 (334)
T cd03586 171 LPVRKIPGVGKVTAEKLKELGIKTIGDLAKLDVELLKKL---FG-KSGRRLYELA 221 (334)
T ss_pred CCchhhCCcCHHHHHHHHHcCCcCHHHHHcCCHHHHHHH---Hh-HHHHHHHHHh
Confidence 578899999999999999999999999999999888884 44 4566666666
No 274
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=87.94 E-value=0.71 Score=48.28 Aligned_cols=59 Identities=22% Similarity=0.217 Sum_probs=46.5
Q ss_pred chhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcC--CCHHHHHHHHHHHHhh
Q psy15878 604 NLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRH--LPLRSARNLISAAKLH 663 (693)
Q Consensus 604 el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~--~~~~~a~~i~~~a~~~ 663 (693)
+-=+|.+|.||||+.+..|.++|+.+.++|++.+++++..+-.. |.-+. +.-+.+|+.+
T Consensus 261 ~~DdL~~I~GiGp~~e~~L~~~Gi~~f~QiA~~t~~~~a~vd~~l~f~gri-d~W~~QA~~l 321 (326)
T PRK12311 261 APDDLKKLTGVSPQIEKKLNDLGIFHFWQLAELDPDDAAKIGEELGLPGRA-DGWVAQAKAL 321 (326)
T ss_pred CchhhhhhccCChhhhhhhhhcCCCCHHHhhCCChhhhhhhhhcccCccch-hHHHHHHHHH
Confidence 44678899999999999999999999999999999977764333 43344 6666666654
No 275
>PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed
Probab=87.79 E-value=0.54 Score=51.77 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=42.4
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++.+.+|.+.||.|+.||+.+++..|.+. ||. ....+...|
T Consensus 179 lPv~~l~GiG~~~~~~L~~lGi~TigdL~~~~~~~L~~~---fG~-~~~~l~~~a 229 (422)
T PRK03609 179 QPVEEVWGVGRRISKKLNAMGIKTALDLADTNIRFIRKH---FNV-VLERTVREL 229 (422)
T ss_pred CChhhcCCccHHHHHHHHHcCCCcHHHHhcCCHHHHHHH---HCH-HHHHHHHHh
Confidence 678899999999999999999999999999999998885 443 344555545
No 276
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=87.55 E-value=0.66 Score=47.68 Aligned_cols=72 Identities=19% Similarity=0.060 Sum_probs=41.9
Q ss_pred CCcEEEEcccchHHHHhch-hcc-------CCC--CcccEEEEecccccCCCCC----hHHHHHHHHHHhccCCCceEEE
Q psy15878 39 KKSIYICTIEKGSKLIGSL-IQE-------NRI--DEIGLIVIDEFHMLNEPQR----GPILECVVSKVLYLKKSIQIFA 104 (693)
Q Consensus 39 ~~~IiV~Tpek~~~Ll~~l-~~~-------~~l--~~i~lvVvDE~H~l~d~~r----g~~le~il~~l~~~~~~~qii~ 104 (693)
+..|+++|+-.+..-..+- ... .|+ .-=++||+||+|....... +......+..|...-++.++|.
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY 215 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVY 215 (303)
T ss_pred CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEE
Confidence 4579999988753321100 001 122 2236999999998764322 1233334444544457789999
Q ss_pred EcCcCC
Q psy15878 105 MSATIG 110 (693)
Q Consensus 105 lSATl~ 110 (693)
+|||-.
T Consensus 216 ~SATga 221 (303)
T PF13872_consen 216 ASATGA 221 (303)
T ss_pred eccccc
Confidence 999953
No 277
>cd01700 PolY_Pol_V_umuC umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.
Probab=87.42 E-value=0.84 Score=48.80 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=42.7
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++.+..|.+.|++|+.||+..+.+.|.+. ||. ....+...|
T Consensus 176 lpl~~l~gig~~~~~~L~~~Gi~ti~dL~~~~~~~L~~r---fG~-~~~~l~~~a 226 (344)
T cd01700 176 LPVGDVWGIGRRTAKKLNAMGIHTAGDLAQADPDLLRKK---FGV-VGERLVREL 226 (344)
T ss_pred CChhhcCccCHHHHHHHHHcCCCcHHHHhcCCHHHHHHH---HHH-HHHHHHHHh
Confidence 578899999999999999999999999999999888875 554 355565555
No 278
>PRK14133 DNA polymerase IV; Provisional
Probab=87.37 E-value=0.93 Score=48.51 Aligned_cols=51 Identities=10% Similarity=0.162 Sum_probs=43.9
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++++..|.+.||+|+.||+..+...|.+. || +....+...|
T Consensus 173 lpv~~l~gig~~~~~~L~~~Gi~ti~dl~~l~~~~L~~r---fG-~~g~~l~~~a 223 (347)
T PRK14133 173 LPISKVHGIGKKSVEKLNNIGIYTIEDLLKLSREFLIEY---FG-KFGVEIYERI 223 (347)
T ss_pred CCccccCCCCHHHHHHHHHcCCccHHHHhhCCHHHHHHH---Hh-HHHHHHHHHh
Confidence 578899999999999999999999999999999988885 56 3566677766
No 279
>PRK02794 DNA polymerase IV; Provisional
Probab=87.35 E-value=0.76 Score=50.59 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=44.1
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++.+.+|...||.|+.||+..+...|.+. ||. .+..+...|
T Consensus 209 lPl~~L~GiG~~~~~~L~~~GI~tigdL~~l~~~~L~~r---fG~-~g~~l~~~a 259 (419)
T PRK02794 209 KPVGIIWGVGPATAARLARDGIRTIGDLQRADEADLMRR---FGS-MGLRLWRLA 259 (419)
T ss_pred CChhhhCCCCHHHHHHHHHhccchHHHHhhCCHHHHHHH---HhH-HHHHHHHHh
Confidence 578899999999999999999999999999999888875 564 467777766
No 280
>KOG2534|consensus
Probab=86.98 E-value=2.8 Score=42.81 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=54.1
Q ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCccc
Q psy15878 609 MDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNI 688 (693)
Q Consensus 609 ~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (693)
.+|-|||.++|++-|..||+|+++++ -+|+++..-. .+|-+--+... .++.. ++|.++.+-+.+.+++.+..
T Consensus 100 tnifGvG~ktA~~Wy~~GfrTled~R-k~~~kft~qq-k~Gl~yy~Df~---~~v~R---eE~~~i~~~V~~av~~~~p~ 171 (353)
T KOG2534|consen 100 TNIFGVGLKTAEKWYREGFRTLEDVR-KKPDKFTRQQ-KAGLKYYEDFL---KRVTR---EEATAIQQTVQEAVWAFDPE 171 (353)
T ss_pred HHHhccCHHHHHHHHHhhhhHHHHHH-hCHHHHHHHH-HHhHHHHHHHh---hhccH---HHHHHHHHHHHHHHhhcCCC
Confidence 37999999999999999999999999 5777776643 34433322221 45666 88888888888888877654
No 281
>PRK01810 DNA polymerase IV; Validated
Probab=86.41 E-value=1.1 Score=49.15 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=43.3
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++.+.+|...|++|+.||+.++...|.+. ||. ....+...|
T Consensus 179 lpv~~l~giG~~~~~~L~~~Gi~tigdL~~~~~~~L~~r---fG~-~g~~l~~~a 229 (407)
T PRK01810 179 LPVGEMHGIGEKTAEKLKDIGIQTIGDLAKADEHILRAK---LGI-NGVRLQRRA 229 (407)
T ss_pred CCHhhcCCcCHHHHHHHHHcCCCcHHHHHhCCHHHHHHH---HhH-HHHHHHHHh
Confidence 578889999999999999999999999999999888875 564 466666666
No 282
>TIGR02027 rpoA DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type. This family consists of the bacterial (and chloroplast) DNA-directed RNA polymerase alpha subunit, encoded by the rpoA gene. The RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The amino terminal domain is involved in dimerizing and assembling the other RNA polymerase subunits into a transcriptionally active enzyme. The carboxy-terminal domain contains determinants for interaction with DNA and with transcriptional activator proteins.
Probab=86.24 E-value=1.3 Score=45.92 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 614 VKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 614 i~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
+.......|.++||.|+.||...++++|.+ +++||+|..++|.+..+.+
T Consensus 242 LSvR~~n~Lk~~~I~ti~dL~~~~~~~l~~-~~n~G~ksl~ei~~~l~~~ 290 (297)
T TIGR02027 242 LSVRSYNCLKRAGIHTLGELVSKSEEELLK-IKNFGKKSLTEIKEKLAEL 290 (297)
T ss_pred ccHHHHhHHHHcCCcCHHHHHhCCHHHHhh-CCCCChhhHHHHHHHHHHc
Confidence 455566777888999999999999999999 7899999999999887653
No 283
>PTZ00205 DNA polymerase kappa; Provisional
Probab=86.10 E-value=0.88 Score=51.01 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=31.5
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAK 639 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~ 639 (693)
+++.++||||+++++.|...||.|+.||+..++.
T Consensus 309 LpV~ki~GIG~~t~~~L~~~GI~TigDLa~~~~~ 342 (571)
T PTZ00205 309 LGLRSVPGVGKVTEALLKGLGITTLSDIYNRRVE 342 (571)
T ss_pred CCcceeCCcCHHHHHHHHHcCCCcHHHHhcCCHH
Confidence 4788999999999999999999999999998865
No 284
>PRK05182 DNA-directed RNA polymerase subunit alpha; Provisional
Probab=85.75 E-value=1.5 Score=45.91 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 613 GVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 613 gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
++.......|.++||.|+.||...+.++|.+ ++|||+|..++|.+..+..
T Consensus 255 ~LS~R~~n~Lk~~~I~ti~dL~~~~~~~l~~-~~n~G~ksl~ei~~~L~~~ 304 (310)
T PRK05182 255 ELSVRSYNCLKRAGINTIGDLVQRTEEELLK-TRNLGKKSLEEIKEKLAEL 304 (310)
T ss_pred ccchHHHHHHHHcCCcCHHHHHhCCHHHHhc-CCCCChhhHHHHHHHHHHc
Confidence 4566777888889999999999999999999 7899999999999887654
No 285
>PRK03103 DNA polymerase IV; Reviewed
Probab=85.65 E-value=1.4 Score=48.25 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=43.5
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++-.|||||++.+++|.+.||.|+.||+..++..|.+. ||. ....+.+.|
T Consensus 181 lpi~~l~gig~~~~~~L~~~Gi~tigdl~~~~~~~L~~~---fG~-~~~~l~~~a 231 (409)
T PRK03103 181 LPVRKLFGVGSRMEKHLRRMGIRTIGQLANTPLERLKKR---WGI-NGEVLWRTA 231 (409)
T ss_pred CCHhhcCCccHHHHHHHHHcCCCCHHHHhcCCHHHHHHH---HCH-HHHHHHHHh
Confidence 578899999999999999999999999999999888885 564 466666666
No 286
>PRK10702 endonuclease III; Provisional
Probab=85.47 E-value=1 Score=44.28 Aligned_cols=67 Identities=9% Similarity=0.102 Sum_probs=48.5
Q ss_pred HHHHcCCCCHHHHHhcChHHHHHHhcCCC--HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCccccccc
Q psy15878 621 QLLNAGYSSLELIARADAKEMVAKIRHLP--LRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVHNT 692 (693)
Q Consensus 621 ~L~~~g~~s~~~l~~a~~~~l~~~~~~~~--~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (693)
.|++. |-|+++|++|++++|.+.+++.| ...|+.|++.|+.++. .+.. .+ .+..+.|..+|||=+-|
T Consensus 53 ~L~~~-~pt~e~l~~a~~~~l~~~i~~~G~y~~kA~~l~~~a~~i~~-~~~~--~~-p~~~~~Ll~lpGVG~kt 121 (211)
T PRK10702 53 KLYPV-ANTPAAMLELGVEGVKTYIKTIGLYNSKAENVIKTCRILLE-QHNG--EV-PEDRAALEALPGVGRKT 121 (211)
T ss_pred HHHHH-cCCHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HcCC--CC-CchHHHHhcCCcccHHH
Confidence 55654 88999999999999999887666 5789999999987654 1111 12 34566677888885543
No 287
>smart00478 ENDO3c endonuclease III. includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=85.41 E-value=2.1 Score=39.55 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=43.5
Q ss_pred HHHHHcCCCCHHHHHhcChHHHHHHhc--CCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCccccc
Q psy15878 620 RQLLNAGYSSLELIARADAKEMVAKIR--HLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVH 690 (693)
Q Consensus 620 ~~L~~~g~~s~~~l~~a~~~~l~~~~~--~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (693)
..|.+. |-|+++|+.++++++.+.++ |++.+.|+.|++-|+.+.. ++.. .+. +..+.|.+++||=.
T Consensus 15 ~~l~~~-~~~~~~l~~~~~~eL~~~l~~~g~~~~ka~~i~~~a~~~~~-~~~~--~~~-~~~~~L~~l~GIG~ 82 (149)
T smart00478 15 ERLFEK-FPTPEDLAAADEEELEELIRPLGFYRRKAKYLIELARILVE-EYGG--EVP-DDREELLKLPGVGR 82 (149)
T ss_pred HHHHHH-CCCHHHHHCCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-HHCC--Ccc-HHHHHHHcCCCCcH
Confidence 334444 56999999999999988775 5667889999988876544 1111 112 34455567888754
No 288
>PRK10689 transcription-repair coupling factor; Provisional
Probab=84.27 E-value=2.8 Score=51.85 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=61.2
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.+++|.+||+.-|...+..+.+ .. . ..+..+..++++.+..++..+
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~--~~-----------------~-------------~~~v~i~~l~g~~s~~e~~~i 695 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRD--RF-----------------A-------------NWPVRIEMLSRFRSAKEQTQI 695 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHH--hh-----------------c-------------cCCceEEEEECCCCHHHHHHH
Confidence 678899999999888888877765 11 0 001347889999999999999
Q ss_pred HHHHhCCCCeEEEecchh-hcccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTSTL-AAGVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l-~~Gvnlp~~~vVI~~ 290 (693)
.+..++|..+|+|+|+-+ ...+++....++|-+
T Consensus 696 l~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVID 729 (1147)
T PRK10689 696 LAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVD 729 (1147)
T ss_pred HHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEe
Confidence 999999999999999744 445667776666543
No 289
>PRK00024 hypothetical protein; Reviewed
Probab=84.03 E-value=6.5 Score=39.12 Aligned_cols=67 Identities=25% Similarity=0.329 Sum_probs=49.0
Q ss_pred hHHHHh-hccC----ccchhhhh---cCCCCCH-HHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 592 DLPQTL-MYCR----APNLRALM---DLPGVKI-GRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 592 ~~~~rl-~~g~----~~el~~l~---~i~gi~~-~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
..+.|+ .+|. ..|+++++ ..|+-.. ..|+.|.+. |.++.++..|++++|.+ ++|+|+..|..|....
T Consensus 11 rprer~~~~G~~~Lsd~ELLa~lL~~g~~~~~~~~LA~~LL~~-fgsL~~l~~as~~eL~~-i~GIG~akA~~L~a~~ 86 (224)
T PRK00024 11 RPRERLLKYGAAALSDAELLAILLRTGTKGKSVLDLARELLQR-FGSLRGLLDASLEELQS-IKGIGPAKAAQLKAAL 86 (224)
T ss_pred hHHHHHHhcCcccCCHHHHHHHHHcCCCCCCCHHHHHHHHHHH-cCCHHHHHhCCHHHHhh-ccCccHHHHHHHHHHH
Confidence 357776 4564 45777755 3454443 468888886 77999999999999998 7899999887664433
No 290
>PRK13910 DNA glycosylase MutY; Provisional
Probab=83.70 E-value=1.1 Score=46.25 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=48.3
Q ss_pred HHHHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCccccccc
Q psy15878 620 RQLLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVHNT 692 (693)
Q Consensus 620 ~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (693)
.++.+. |-|+++|++|+++++.+.++|.|. ..|++|.+.|+.+.. +..-.+-. ..+.|..+|||=+-|
T Consensus 16 ~rf~~~-fPt~e~La~a~~~el~~~~~glGyy~RAr~L~~~A~~i~~---~~~g~~P~-~~~~L~~LpGIG~kT 84 (289)
T PRK13910 16 SPFLEA-FPTLKDLANAPLEEVLLLWRGLGYYSRAKNLKKSAEICVK---EHHSQLPN-DYQSLLKLPGIGAYT 84 (289)
T ss_pred HHHHHH-CCCHHHHHCCCHHHHHHHHHcCCcHHHHHHHHHHHHHHHH---HhCCCCCh-hHHHHHhCCCCCHHH
Confidence 455566 889999999999999999988884 449999999987754 11111111 356677888885543
No 291
>KOG1002|consensus
Probab=83.59 E-value=3.1 Score=45.03 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=64.0
Q ss_pred HHHHHHHhhh--hCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchh-----------ccCCCCc--ccEEE
Q psy15878 6 YQSLAKAAEE--FKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLI-----------QENRIDE--IGLIV 70 (693)
Q Consensus 6 ~~~l~~~~~~--~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~-----------~~~~l~~--i~lvV 70 (693)
++|..+.... -.++|-.|+|..-+. ..+. +.++|++.+|+..+.+..++-- ....+++ +--||
T Consensus 244 mQW~nEI~~~T~gslkv~~YhG~~R~~-nike-l~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiI 321 (791)
T KOG1002|consen 244 MQWKNEIERHTSGSLKVYIYHGAKRDK-NIKE-LMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRII 321 (791)
T ss_pred HHHHHHHHHhccCceEEEEEecccccC-CHHH-hhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeee
Confidence 3455444332 357888899865332 3333 3899999999998887776521 1112333 34699
Q ss_pred EecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCC-C-HH---HHHHhhcCC
Q psy15878 71 IDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIG-N-IN---ALSTFIEGI 122 (693)
Q Consensus 71 vDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~-n-~~---~la~~l~~~ 122 (693)
+||||.+-+ |.......+--|. .....+||.|+- | .. .+-+||+..
T Consensus 322 lDEAH~IK~--R~snTArAV~~L~----tt~rw~LSGTPLQNrigElySLiRFL~i~ 372 (791)
T KOG1002|consen 322 LDEAHNIKD--RQSNTARAVFALE----TTYRWCLSGTPLQNRIGELYSLIRFLNIN 372 (791)
T ss_pred hhhhccccc--ccccHHHHHHhhH----hhhhhhccCCcchhhHHHHHHHHHHHccC
Confidence 999999875 3222222222222 235588999974 2 33 345666654
No 292
>KOG2093|consensus
Probab=83.56 E-value=1.8 Score=49.88 Aligned_cols=98 Identities=12% Similarity=0.110 Sum_probs=75.3
Q ss_pred HHHHHHhCCC--chhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHH
Q psy15878 546 QKVAKMYGIQ--NSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLL 623 (693)
Q Consensus 546 ~~i~~~y~v~--~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~ 623 (693)
.+|-++-||+ .|-= +..-+|.++.+-|+-=|-+|..+.....|...+ .+-.|||||-..--+|.
T Consensus 501 qEI~e~TgC~aS~Gig-----~t~LLARlATr~AKP~Gq~~l~a~~veeFis~~---------~v~~LPGVG~sm~~kL~ 566 (1016)
T KOG2093|consen 501 QEILEKTGCPASAGIG-----GTMLLARLATRVAKPNGQFYLSAEKVEEFISQL---------KVDDLPGVGSSMKSKLV 566 (1016)
T ss_pred HHHHhccCCceeeccc-----hHHHHHHHHHhhcCCCceeeecHHHHHHHhhhc---------ccccCCCccHHHHHHHH
Confidence 3556666766 3321 344577888888887776777666666665433 45689999999999999
Q ss_pred HcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 624 NAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 624 ~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
..||.|..||......++.+. +|+|.+++|..+.
T Consensus 567 s~~i~tCgdLq~~T~~kl~k~---~G~Klgq~i~~~C 600 (1016)
T KOG2093|consen 567 SQFIQTCGDLQLITLIKLRKV---FGPKLGQKIYRGC 600 (1016)
T ss_pred HhccchhHHHHHHHHHHHHhh---hcccHHHHHHHhc
Confidence 999999999999887777773 8999999998888
No 293
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=83.16 E-value=2.5 Score=41.75 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=46.0
Q ss_pred CCCHHHHHhcChHHHHHHhc--CCCHHHHHHHHHHHHhhhhhhhhhHHHH-HHHHHHHHhcCccccccc
Q psy15878 627 YSSLELIARADAKEMVAKIR--HLPLRSARNLISAAKLHFITKMDKVEAM-KNLIQNLQKNYDNIVHNT 692 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~--~~~~~~a~~i~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 692 (693)
+.|+++|+++++++|.+.++ |+....|+.|+.-|+.+.. .+.....+ ..+..+.|-.++||=+-|
T Consensus 66 ~~t~e~L~~a~~eeL~~~Irp~Gf~~~KA~~Lk~la~~i~~-~~g~~~~~~~~~~re~Ll~l~GIG~kT 133 (218)
T PRK13913 66 EINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSENILK-DFGSFENFKQEVTREWLLDQKGIGKES 133 (218)
T ss_pred CCCHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HcCCchhccCchHHHHHHcCCCccHHH
Confidence 45999999999999999987 6667789999998876654 22221111 135667788889886544
No 294
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=81.85 E-value=4.4 Score=39.04 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=42.6
Q ss_pred cchhhhhcCCCCCHHHHHHHHHc--C-CCCHHHHHhc-ChHHHHHHhc--CCCHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNA--G-YSSLELIARA-DAKEMVAKIR--HLPLRSARNLISAAKLHFITKMDKVEAMKN 676 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~--g-~~s~~~l~~a-~~~~l~~~~~--~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~ 676 (693)
.+.-.|.++||||+++|.++.-. + +... .+... ..++...++. |+.++.|++.++.+..- . .+.+++-.
T Consensus 105 ~D~~~L~~vpGIGkKtAerIilELkdK~~~~-~~~~~~~~~e~~~AL~~LGy~~~ea~~av~~~~~~-~---~~~e~lik 179 (188)
T PRK14606 105 QDVEGLSKLPGISKKTAERIVMELKDEFESA-GIKDMRIYHESLEALVSLGYPEKQAREAVKHVYRE-G---MKTSELIK 179 (188)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHhhccc-cCCCcccHHHHHHHHHHcCCCHHHHHHHHHHHhhC-C---CCHHHHHH
Confidence 45567889999999999998633 1 1100 00000 1234444443 56688888888877421 2 44555555
Q ss_pred HHHHHH
Q psy15878 677 LIQNLQ 682 (693)
Q Consensus 677 ~~~~~~ 682 (693)
++...|
T Consensus 180 ~ALk~l 185 (188)
T PRK14606 180 EALKFL 185 (188)
T ss_pred HHHHHH
Confidence 555444
No 295
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=81.75 E-value=4.3 Score=45.86 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=55.4
Q ss_pred eEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHH-hhceEEEcCCCCHHHHHHHHHH
Q psy15878 182 VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECI-LYGVAYHHADLTAGERRLIEEA 260 (693)
Q Consensus 182 vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~-~~gv~~~h~~l~~~eR~~ve~~ 260 (693)
+||++|||.-|..+++.+...+. .. ...++.++||.+...+. +.
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~--------------------------------~~~~~~~~~i~GG~~~~~q~---~~ 146 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGK--------------------------------NLGGLRVAVVYGGVSIRKQI---EA 146 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHh--------------------------------hcCCccEEEEECCCCHHHHH---HH
Confidence 99999999999998888766111 11 23489999999988776 44
Q ss_pred HhCCCCeEEEecc-----hhhcc-cCCCCcEEEEec
Q psy15878 261 YLAGTLQIICCTS-----TLAAG-VNLPAQRVIIRD 290 (693)
Q Consensus 261 f~~g~i~VLvaT~-----~l~~G-vnlp~~~vVI~~ 290 (693)
++.| .+|||||+ .+..| +++..+.++|.+
T Consensus 147 l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 147 LKRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred HhcC-CCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 4556 99999998 56666 888888877765
No 296
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=81.46 E-value=6.5 Score=38.02 Aligned_cols=83 Identities=13% Similarity=0.188 Sum_probs=48.4
Q ss_pred cchhhhhcCCCCCHHHHHHHHHc--C-CCCHHHHHhc--ChHHHHHHhc--CCCHHHHHHHHHHHH---hhhhhhhhhHH
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNA--G-YSSLELIARA--DAKEMVAKIR--HLPLRSARNLISAAK---LHFITKMDKVE 672 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~--g-~~s~~~l~~a--~~~~l~~~~~--~~~~~~a~~i~~~a~---~~~~~~~~~~~ 672 (693)
.+.-.|.++||||+++|.++.-. | +......... ..++...++- |+.++.|+++++.+. ..+ +..+++
T Consensus 104 ~D~~~L~~vpGIGkKtAeRIIlELkdKl~~~~~~~~~~~~~~ea~~AL~~LGy~~~ea~~al~~v~~~~~~~--~~~~~~ 181 (196)
T PRK13901 104 EDIELISKVKGIGNKMAGKIFLKLRGKLVKNDELESSLFKFKELEQSIVNMGFDRKLVNSAIKEIMLLDEFL--NLKDSE 181 (196)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHhhccccccccCcccHHHHHHHHHHcCCCHHHHHHHHHHHhcchhhh--hhhhhh
Confidence 45567889999999999997632 1 1100000000 1234444443 566788888888772 221 235677
Q ss_pred HHHHHHHHHHhcCcc
Q psy15878 673 AMKNLIQNLQKNYDN 687 (693)
Q Consensus 673 ~~~~~~~~~~~~~~~ 687 (693)
.-.+-+.+.|+++.+
T Consensus 182 ~~~~~~~~~~~~~~~ 196 (196)
T PRK13901 182 QEQFLFKEVLKRLSN 196 (196)
T ss_pred hhhHHHHHHHHHhcC
Confidence 777777777776643
No 297
>CHL00013 rpoA RNA polymerase alpha subunit
Probab=80.76 E-value=2.2 Score=44.81 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=40.4
Q ss_pred CHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15878 615 KIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKL 662 (693)
Q Consensus 615 ~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~ 662 (693)
.....--|.++||.|+.||...+.++|.+ +++||+|..++|.+..+.
T Consensus 271 SvRs~NcLk~a~I~ti~dL~~~s~~dLl~-ikN~GkKSl~EI~~~L~~ 317 (327)
T CHL00013 271 SVRAYNCLKRANIHTLLDLLNYSQEDLLK-IKNFGQKSAKEVLEALQK 317 (327)
T ss_pred chhhhhhhhhcCccCHHHHHhcCHHHHhh-hhccCHhHHHHHHHHHHH
Confidence 34445567777999999999999999999 789999999999998855
No 298
>TIGR01083 nth endonuclease III. This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=80.20 E-value=3.6 Score=39.90 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=45.6
Q ss_pred HHHHHcCCCCHHHHHhcChHHHHHHhcCCC--HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCcccccc
Q psy15878 620 RQLLNAGYSSLELIARADAKEMVAKIRHLP--LRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVHN 691 (693)
Q Consensus 620 ~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~--~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (693)
.+|++ .|-|+++|+.+++++|.+.+++.| ...|+.|++-|+.+... +.. .+ .+..+.|.+++||=.-
T Consensus 49 ~~l~~-~~pt~~~l~~~~~~~L~~~ir~~G~~~~Ka~~i~~~a~~i~~~-~~~--~~-~~~~~~L~~l~GIG~k 117 (191)
T TIGR01083 49 KKLFE-VYPTPQALAQAGLEELEEYIKSIGLYRNKAKNIIALCRILVER-YGG--EV-PEDREELVKLPGVGRK 117 (191)
T ss_pred HHHHH-HCCCHHHHHcCCHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-cCC--CC-chHHHHHHhCCCCcHH
Confidence 33444 478999999999999988776544 56899999988876541 111 11 2345667788888543
No 299
>COG0389 DinP Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair]
Probab=80.14 E-value=1.8 Score=46.35 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=35.9
Q ss_pred hhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHh
Q psy15878 607 ALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKI 645 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~ 645 (693)
++.+++|||+..+.+|...||.|+.++++.+.+.|.+.+
T Consensus 177 pv~~~~GvG~~~~~~l~~~Gi~ti~dl~~~~~~~L~~~~ 215 (354)
T COG0389 177 PVLEFWGVGKVTAEKLRRLGISTIGDLAETDLDALKKRF 215 (354)
T ss_pred ChhhhCCCCHHHHHHHHHcCChhHHHHHhcCHHHHHHHH
Confidence 788999999999999999999999999998888887754
No 300
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=80.10 E-value=3.4 Score=35.72 Aligned_cols=46 Identities=28% Similarity=0.449 Sum_probs=37.9
Q ss_pred HHHHHHc-CCCCHHHHHhcChHHHHHHhcC--CCHHHHHHHHHHHHhhh
Q psy15878 619 ARQLLNA-GYSSLELIARADAKEMVAKIRH--LPLRSARNLISAAKLHF 664 (693)
Q Consensus 619 a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~--~~~~~a~~i~~~a~~~~ 664 (693)
.++|.+. ||-|+++|+.+++++|.+.+++ ++...|+.|++.|+.++
T Consensus 18 ~~~l~~~~g~pt~~~l~~~~~~el~~~i~~~G~~~~ka~~i~~~a~~~~ 66 (108)
T PF00730_consen 18 YRRLFERYGFPTPEALAEASEEELRELIRPLGFSRRKAKYIIELARAIL 66 (108)
T ss_dssp HHHHHHHHSCSSHHHHHCSHHHHHHHHHTTSTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHhCCHHHHHHHhhccCCCHHHHHHHHHHHHHhh
Confidence 4556666 8999999999999999998765 66678999999987664
No 301
>PRK12373 NADH dehydrogenase subunit E; Provisional
Probab=79.99 E-value=2.9 Score=44.80 Aligned_cols=61 Identities=16% Similarity=0.022 Sum_probs=46.4
Q ss_pred hhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcC--CCHHHH-HHHHHHHHhhhh
Q psy15878 605 LRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRH--LPLRSA-RNLISAAKLHFI 665 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~--~~~~~a-~~i~~~a~~~~~ 665 (693)
-=+|.+|.|||++.+..|.+.||.+.++|+.+++.++..+=.. |.-+.. +.-+.+|+.+..
T Consensus 322 aDDLk~I~GIGpk~e~~Ln~~Gi~~f~QIA~wt~~eia~vd~~l~f~Gri~rd~Wv~QAk~La~ 385 (400)
T PRK12373 322 ADDLKLISGVGPKIEATLNELGIFTFDQVAAWKKAERAWVDGYLNFKGRIERDDWVKQAKALAK 385 (400)
T ss_pred chhhhhccCCChHHHHHHHhcCCCCHHHHhCCCHHHhHHhhhcccCCCCcCcchHHHHHHHHhc
Confidence 3467889999999999999999999999999999987664222 333332 456777776655
No 302
>KOG0950|consensus
Probab=79.51 E-value=1.1 Score=52.27 Aligned_cols=99 Identities=21% Similarity=0.222 Sum_probs=75.9
Q ss_pred ccchhhHhhhcC-hhHHHHHHHcCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCchhHHH
Q psy15878 483 RSKVYDRYTKFH-PQTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQN 561 (693)
Q Consensus 483 ~~~~~~~~~~l~-~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i~e~~~~~i~~~y~v~~g~~~~ 561 (693)
...|...++..+ -..++.+...++...++.....+...+...+.+.++.++..+.|...+.+..+.+.+|.+++|.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~ 173 (1008)
T KOG0950|consen 94 ECSWEHLFSIFPKLDHLRDLPLVSVSEPFILDQASEDLNDKLLQIHIRFFSAKALFDLESEMSILEVSSKNRISRSCLQT 173 (1008)
T ss_pred ecccccccccccchhcccCCCcccccchhHHhhhhhccchhHHHHhhhhhhhhcccchhhccccccccccccccccccCC
Confidence 444544444311 1223334445677777777777655555567888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCcc
Q psy15878 562 FLNVTSYFASKVYRFCEELPE 582 (693)
Q Consensus 562 l~~~~~~~a~~~~~~~~~~~~ 582 (693)
+++.... +.+.+.+|..++|
T Consensus 174 ~~~~~r~-~~~~~~~c~~~~~ 193 (1008)
T KOG0950|consen 174 LSSQSRT-AAMEVAKCAPLGP 193 (1008)
T ss_pred cchhhhH-HHHHHhhccCCCc
Confidence 9999988 9999999999994
No 303
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=79.18 E-value=1.1 Score=42.75 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=25.3
Q ss_pred cCCCcEEEEcccchHHHHhchh--cc-CCCCcccEEEEecccccCC
Q psy15878 37 LNKKSIYICTIEKGSKLIGSLI--QE-NRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 37 ~~~~~IiV~Tpek~~~Ll~~l~--~~-~~l~~i~lvVvDE~H~l~d 79 (693)
...+||||++..-+ ++... .. +...+-.+|||||||.+.+
T Consensus 117 ~~~adivi~~y~yl---~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYL---FDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHH---HSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHH---hhHHHHhhhccccccCcEEEEecccchHH
Confidence 36799999998753 33222 11 2334567999999998864
No 304
>PRK14701 reverse gyrase; Provisional
Probab=78.69 E-value=4.7 Score=51.59 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=53.7
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
++.++||.+||+.-+..++..+.. .. .. + -+...++++||+++..++..+
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~--l~------------------~~--------~--~~~v~v~~~~g~~s~~e~~~~ 170 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIES--FC------------------EK--------A--NLDVRLVYYHSNLRKKEKEEF 170 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHH--HH------------------hh--------c--CCceeEEEEeCCCCHHHHHHH
Confidence 567999999999999988888876 11 00 0 011237889999999999999
Q ss_pred HHHHhCCCCeEEEecchh
Q psy15878 258 EEAYLAGTLQIICCTSTL 275 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l 275 (693)
.+.+++|..+|||+|+-.
T Consensus 171 ~~~l~~g~~dILV~TPgr 188 (1638)
T PRK14701 171 LERIENGDFDILVTTAQF 188 (1638)
T ss_pred HHHHhcCCCCEEEECCch
Confidence 999999999999999853
No 305
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=78.45 E-value=6.6 Score=38.05 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=37.7
Q ss_pred cchhhhhcCCCCCHHHHHHHHHcCCCCHHH-HH-------hc--ChHHHHHHhc--CCCHHHHHHHHHHHHh
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNAGYSSLEL-IA-------RA--DAKEMVAKIR--HLPLRSARNLISAAKL 662 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~g~~s~~~-l~-------~a--~~~~l~~~~~--~~~~~~a~~i~~~a~~ 662 (693)
.+.-.|.++||||+++|.+++.. ++.-.. +. .. ..+++...+. |++++.|.++++....
T Consensus 105 ~d~~~L~~v~Gig~k~A~~I~~~-l~~~~~~~~~~~~~~~~~~~~~~ev~~aL~~LG~~~~~a~~~~~~~~~ 175 (192)
T PRK00116 105 GDVKALTKVPGIGKKTAERIVLE-LKDKLAAAASAAAAAAAASSALEEAVSALVALGYKPKEASKAVAKILK 175 (192)
T ss_pred CCHHHHHhCCCCCHHHHHHHHHH-HHHHhhcccccccccccccchHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 45567899999999999999866 221110 00 00 0245555554 5778889999988853
No 306
>KOG0701|consensus
Probab=78.39 E-value=2.2 Score=53.42 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCC
Q psy15878 254 RRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTG 314 (693)
Q Consensus 254 R~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g 314 (693)
+..+...|+...+++|++|+++..|+|+|-+..|+..+ .|.....|+|..||+-+..
T Consensus 343 ~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~----~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 343 QAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFD----APTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheecc----CcchHHHHHHhhcccccch
Confidence 67899999999999999999999999999988888766 3778999999999998765
No 307
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=78.38 E-value=7.5 Score=37.25 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=33.2
Q ss_pred cchhhhhcCCCCCHHHHHHHHHc--C-CCCHHHHHhcChHHHHHHhc--CCCHHHHHHHHHHH
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNA--G-YSSLELIARADAKEMVAKIR--HLPLRSARNLISAA 660 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~--g-~~s~~~l~~a~~~~l~~~~~--~~~~~~a~~i~~~a 660 (693)
.+.-.|.++||||+++|.++.-. | +.+.... .-..++...++- |+.++.|++.++.+
T Consensus 105 ~D~~~L~~vpGIGkKtAeRIilELkdK~~~~~~~-~~~~~ea~~AL~~LGy~~~ea~~a~~~~ 166 (183)
T PRK14601 105 GDESVLKKVPGIGPKSAKRIIAELSDAKTKLENV-SDDKSEALAALLTLGFKQEKIIKVLASC 166 (183)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHHhhccCCC-CccHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34567889999999999987632 1 1000000 001134444443 56677788888776
No 308
>PRK09482 flap endonuclease-like protein; Provisional
Probab=78.08 E-value=3.2 Score=42.05 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=33.2
Q ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 609 MDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 609 ~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
-.+||||+++|..|.+. |.|++.|.+. .++ ++.+..+++.++...+
T Consensus 185 pGVpGIG~KtA~~LL~~-~gsle~i~~~-~~~-------~~~~~~~~L~~~~~~a 230 (256)
T PRK09482 185 PGVAGIGPKSAAELLNQ-FRSLENIYES-LDA-------LPEKWRKKLEEHKEMA 230 (256)
T ss_pred CCCCCcChHHHHHHHHH-hCCHHHHHHh-HHH-------hhHHHHHHHHHhHHHH
Confidence 36899999999999999 7799999854 222 2346666666665433
No 309
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=77.85 E-value=5.7 Score=49.41 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=52.0
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.+++|.+||+.-|..++..+.. +. ... + .....++++||+++..+|...
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~--l~------------------~~~-~--------i~~~~i~~~~Gg~~~~e~~~~ 170 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISS--LA------------------EKA-G--------VGTVNIGAYHSRLPTKEKKEF 170 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHH--HH------------------Hhc-C--------CceeeeeeecCCCCHHHHHHH
Confidence 678999999999999998888776 11 000 0 000125578999999999999
Q ss_pred HHHHhCCCCeEEEecch
Q psy15878 258 EEAYLAGTLQIICCTST 274 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~ 274 (693)
.+.+++|..+|||+|+-
T Consensus 171 ~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 171 MERIENGDFDILITTTM 187 (1171)
T ss_pred HHHHhcCCCCEEEECHH
Confidence 99999999999999974
No 310
>cd00080 HhH2_motif Helix-hairpin-helix class 2 (Pol1 family) motif. HhH2 domains are found in Rad2 family of prokaryotic and eukaryotic replication and repair nucleases, i.e., DNA polymerase I, Taq DNA polymerase, DNA repair protein Rad2 endonuclease, flap endonuclease, exonuclease I and IX, 5'-3' exonuclease and also bacteriophage Rnase H. These nucleases degrade RNA-DNA or DNA-DNA duplexes, or both and play essential roles in DNA duplication, repair, and recombination.
Probab=77.21 E-value=2.4 Score=34.14 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=24.6
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhcCh
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIARADA 638 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~a~~ 638 (693)
.+||||+++|.+|.+. |.|++.+..+..
T Consensus 26 gv~giG~k~A~~ll~~-~~~~~~~~~~~~ 53 (75)
T cd00080 26 GVPGIGPKTALKLLKE-YGSLENLLENLD 53 (75)
T ss_pred CCCcccHHHHHHHHHH-hCCHHHHHHHHH
Confidence 7999999999999988 889999987543
No 311
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=77.20 E-value=3.3 Score=43.45 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=36.2
Q ss_pred hhhhhcCCCCCHHHHHHHHHc---C-CCCHHHHHhcChHHHHHH--hcCCCHHHHHHHH
Q psy15878 605 LRALMDLPGVKIGRARQLLNA---G-YSSLELIARADAKEMVAK--IRHLPLRSARNLI 657 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~---g-~~s~~~l~~a~~~~l~~~--~~~~~~~~a~~i~ 657 (693)
+.++.+|||||+++|.++.+- | +..++++..-.|..+... ++|+|+++|+++.
T Consensus 44 ~~~~~~ipgiG~~ia~kI~E~~~tG~~~~le~l~~~~~~~l~~l~~i~GiGpk~a~~l~ 102 (307)
T cd00141 44 LEEAKKLPGIGKKIAEKIEEILETGKLRKLEELREDVPPGLLLLLRVPGVGPKTARKLY 102 (307)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHcCCHHHHHHHhccchHHHHHHHcCCCCCHHHHHHHH
Confidence 346689999999999887765 3 223333433335544332 5799999999998
No 312
>cd03468 PolY_like DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.
Probab=77.15 E-value=3.4 Score=43.86 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=40.5
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++ +++|||++.+..|.+.|+.|+.||+..+..++.+. ||.+ ...+...|
T Consensus 171 lp~-~~~gig~~~~~~L~~~Gi~t~~dl~~~~~~~l~~r---fG~~-~~~l~~~~ 220 (335)
T cd03468 171 LPV-AALRLPPETVELLARLGLRTLGDLAALPRAELARR---FGLA-LLLRLDQA 220 (335)
T ss_pred CCh-hHhCCCHHHHHHHHHhCcccHHHHHhCChHHHHhh---cCHH-HHHHHHHH
Confidence 344 68999999999999999999999999998888874 6754 44555555
No 313
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [].; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.
Probab=76.98 E-value=5.3 Score=38.30 Aligned_cols=71 Identities=3% Similarity=-0.074 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccC
Q psy15878 530 FFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCR 601 (693)
Q Consensus 530 ~~~a~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~ 601 (693)
+..+-+.+.|.++.|..+|.+..++.-|++=+...+...++..+...|+..+. ..+..........++-|+
T Consensus 102 ~~l~~~v~~Wa~G~~~~~i~~~t~l~EGdiVR~~rRl~dlLrql~~aa~~~g~-~~L~~~~~~a~~~i~R~i 172 (180)
T PF08148_consen 102 PGLMEVVYAWASGASFAEILEMTDLFEGDIVRWIRRLIDLLRQLANAAKIIGD-PELAEKAREAIDLIRRDI 172 (180)
T ss_dssp TTTHHHHHHHHCT--HHHHCCT-SS-HHHHHHHHHHHHHHHHHHHHHHHCCT--HHHHHHHHHHHHHHSHCC
T ss_pred ccHHHHHHHHHCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhccCCc
Confidence 34455689999999999999999999999999999999999999999998885 345666666665555543
No 314
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=76.38 E-value=3.5 Score=42.36 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=45.9
Q ss_pred HHHHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCccccccc
Q psy15878 620 RQLLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVHNT 692 (693)
Q Consensus 620 ~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (693)
.+|.+. |-|+++|+.|+.+++.+.+.++|. ..|+.|.+.|+.+... + .-.+. ...+.|.++|||=+-|
T Consensus 49 ~rl~~~-fpt~~~La~a~~eeL~~~~~~lG~y~RAr~L~~~A~~i~~~-~--~g~~p-~~~~~L~~LpGIG~~T 117 (275)
T TIGR01084 49 ERFLER-FPTVQALANAPQDEVLKLWEGLGYYARARNLHKAAQEVVEE-F--GGEFP-QDFEDLAALPGVGRYT 117 (275)
T ss_pred HHHHHh-CCCHHHHHCcCHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH-c--CCCCc-HHHHHHHhCCCCCHHH
Confidence 334444 889999999999999888777664 3488899888866541 1 11111 2356677888886544
No 315
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=76.28 E-value=3.8 Score=41.33 Aligned_cols=45 Identities=27% Similarity=0.338 Sum_probs=32.8
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
.+||||+++|..|.+. |.|+++|.++-.. ++.+..+++.++..+.
T Consensus 187 Gv~GiG~ktA~~Ll~~-~gsle~i~~~~~~--------~~~~~~~~l~~~~~~~ 231 (240)
T cd00008 187 GVPGIGEKTAAKLLKE-YGSLEGILENLDK--------IKGKLREKLEEGKEMA 231 (240)
T ss_pred CCCccCHHHHHHHHHH-hCCHHHHHHhHHH--------HhHHHHHHHHHhHHHH
Confidence 7899999999999988 8899999864322 2336666666655443
No 316
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=75.94 E-value=2.2 Score=48.98 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=29.1
Q ss_pred CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 38 NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
..+||+|++..-+..-++. ..+.+.+.+.+||||||++.+
T Consensus 181 ~~AdivItNHalL~~~~~~--~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 181 RRCRILFCTHAMLGLAFRD--KWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred ccCCEEEECHHHHHHHhhh--hcCCCCCCCEEEEeCCcchHH
Confidence 6789999998754332221 225678899999999998864
No 317
>PRK08609 hypothetical protein; Provisional
Probab=75.70 E-value=18 Score=41.55 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=39.8
Q ss_pred hhhcCCCCCHHHHHHHHHc---C-CCCHHHHHhcChHHHHH--HhcCCCHHHHHHHHHHH
Q psy15878 607 ALMDLPGVKIGRARQLLNA---G-YSSLELIARADAKEMVA--KIRHLPLRSARNLISAA 660 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~---g-~~s~~~l~~a~~~~l~~--~~~~~~~~~a~~i~~~a 660 (693)
+|..|||||...|.+..+- | +.-+++|..-.|..+.. .++|+|+|+|+++.+..
T Consensus 49 ~l~~ipgIG~~ia~kI~Eil~tG~~~~le~l~~~~p~~~~~l~~i~GiGpk~a~~l~~~l 108 (570)
T PRK08609 49 DFTKLKGIGKGTAEVIQEYRETGESSVLQELKKEVPEGLLPLLKLPGLGGKKIAKLYKEL 108 (570)
T ss_pred hhccCCCcCHHHHHHHHHHHHhCChHHHHHHHhhCcHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 6789999999998877665 5 44466666555655553 36899999999987543
No 318
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=75.16 E-value=18 Score=30.23 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=48.9
Q ss_pred HHHHHHHHHHh-cccCCHHHHHHHHHHhhhhhccCchhhhh--------hhhhhHHHHHHHHHhhcCCeEeeccCccEEe
Q psy15878 354 LVDLILEVVAA-NLCSSLEDVKTLIKHTLFYQLKSPEDQQT--------FLETTLSEIVASLLASKGTMLTMNEAGHLSL 424 (693)
Q Consensus 354 l~~~il~~i~~-~~~~~~~~~~~~l~~t~~~~~~~p~~~~~--------~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~ 424 (693)
+..-+|..+.. |...+..++.+.+...|-.. +++... .....-+.-+...|...|+|+... .|.+.+
T Consensus 5 ~~~piL~~L~~~g~~~~~~ei~~~v~~~~~ls---~e~~~~~~~sg~~~~~~~~ri~Wa~~~L~~aGli~~~~-rG~~~i 80 (92)
T PF14338_consen 5 LMPPILEALKDLGGSASRKEIYERVAERFGLS---DEERNERLPSGQGYSRFKNRIRWARSYLKKAGLIERPK-RGIWRI 80 (92)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHhCCC---HHHHHHHcccCCcchhHHHhHHHHHHHHHHCCCccCCC-CCceEE
Confidence 44455566665 77778888888777655322 111000 012233556788899999998643 568999
Q ss_pred cHHHHHHHH
Q psy15878 425 TSIAKAAVQ 433 (693)
Q Consensus 425 T~lG~~~~~ 433 (693)
|+.|+.+..
T Consensus 81 T~~G~~~l~ 89 (92)
T PF14338_consen 81 TEKGRKALA 89 (92)
T ss_pred CHhHHHHHh
Confidence 999988754
No 319
>PF12482 DUF3701: Phage integrase protein; InterPro: IPR022169 This domain family is found in bacteria, and is approximately 100 amino acids in length. The family is found in association with PF00589 from PFAM.
Probab=75.09 E-value=4.8 Score=33.98 Aligned_cols=51 Identities=20% Similarity=0.098 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHcCCCCHHHHHhcChHHH---HHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 614 VKIGRARQLLNAGYSSLELIARADAKEM---VAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 614 i~~~~a~~L~~~g~~s~~~l~~a~~~~l---~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
+.+..|++|..+||.|+.||...-+..- -..++|+|...|..|..=...+.
T Consensus 21 f~p~va~~L~aaGi~TL~dL~~~i~~rg~~Wwr~vpglG~~~A~~I~awLa~h~ 74 (96)
T PF12482_consen 21 FPPRVARRLAAAGIRTLADLVDRINRRGGRWWRAVPGLGAAGARRIEAWLAAHP 74 (96)
T ss_pred cCHHHHHHHHHcCCchHHHHHHHHHHccchHHHhCcccchHHHHHHHHHHHHhH
Confidence 4588899999999999999987654433 45578999999999987765553
No 320
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=74.63 E-value=3.5 Score=40.31 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=27.5
Q ss_pred cCccchhhhhcCCCCCHHHHHHHHHcCCCCH
Q psy15878 600 CRAPNLRALMDLPGVKIGRARQLLNAGYSSL 630 (693)
Q Consensus 600 g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~ 630 (693)
.||.+.-+|+.|||||+++|---.+.+|.=+
T Consensus 103 ~vP~~~~eL~~LPGVGrKTAnvVL~~a~g~p 133 (211)
T COG0177 103 EVPDTREELLSLPGVGRKTANVVLSFAFGIP 133 (211)
T ss_pred CCCchHHHHHhCCCcchHHHHHHHHhhcCCC
Confidence 5899999999999999999998888877666
No 321
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=74.59 E-value=4.5 Score=30.70 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=22.8
Q ss_pred cChHHHHHHhcCCCHHHHHHHHHHHHhhhh
Q psy15878 636 ADAKEMVAKIRHLPLRSARNLISAAKLHFI 665 (693)
Q Consensus 636 a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~ 665 (693)
.+.++|.+ + ||++.+|++||+.|+..+-
T Consensus 4 v~k~dLi~-l-Gf~~~tA~~IIrqAK~~lV 31 (59)
T PF11372_consen 4 VTKKDLIE-L-GFSESTARDIIRQAKALLV 31 (59)
T ss_pred cCHHHHHH-c-CCCHHHHHHHHHHHHHHHH
Confidence 35567777 5 9999999999999976654
No 322
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.81 E-value=11 Score=37.30 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=42.9
Q ss_pred ccchhhhhcCCCCCH-----HHHHHHHHcCC---CCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 602 APNLRALMDLPGVKI-----GRARQLLNAGY---SSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 602 ~~el~~l~~i~gi~~-----~~a~~L~~~g~---~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
..||++++==.|.++ ..|+.|.+. | .++..+..|++++|.+ ++|+|+..|..|....
T Consensus 16 d~ELLailL~~g~~~~~~~~~lA~~ll~~-f~~~g~l~~l~~a~~~eL~~-i~GiG~aka~~l~a~~ 80 (218)
T TIGR00608 16 DYELLAIILRTGTPKGLDVLSLSKRLLDV-FGRQDSLGHLLSAPPEELSS-VPGIGEAKAIQLKAAV 80 (218)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHH-hcccCCHHHHHhCCHHHHHh-CcCCcHHHHHHHHHHH
Confidence 457777552233332 378888886 7 7999999999999998 7899998887775544
No 323
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=73.74 E-value=22 Score=37.77 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=37.3
Q ss_pred hhhhcCCCCCHHHHHHHHHc---CCCC-HH-HHHhcChHHHHHH--hcCCCHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNA---GYSS-LE-LIARADAKEMVAK--IRHLPLRSARNLIS 658 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~---g~~s-~~-~l~~a~~~~l~~~--~~~~~~~~a~~i~~ 658 (693)
.++.+|||||++.|.++.+- |--. .. .+..-.|..+... ++|+|+++|+.+.+
T Consensus 48 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~~~e~l~~~~p~~l~~l~~i~GiGpk~a~~l~~ 107 (334)
T smart00483 48 KDLKGLPGIGDKIKKKIEEIIETGKSSKVLEILNDEVYKSLKLFTNVFGVGPKTAAKWYR 107 (334)
T ss_pred HHHhcCCCccHHHHHHHHHHHHhCcHHHHHHHhcCcHHHHHHHHHccCCcCHHHHHHHHH
Confidence 46789999999999988754 6544 33 3333335544443 57999999999876
No 324
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=73.52 E-value=9.4 Score=37.08 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=18.2
Q ss_pred cchhhhhcCCCCCHHHHHHHHH
Q psy15878 603 PNLRALMDLPGVKIGRARQLLN 624 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~ 624 (693)
.+.--|.++||||+++|+++.-
T Consensus 105 ~d~~~L~k~PGIGkKtAerivl 126 (201)
T COG0632 105 EDVKALSKIPGIGKKTAERIVL 126 (201)
T ss_pred cChHhhhcCCCCCHHHHHHHHH
Confidence 4556788999999999998853
No 325
>KOG0391|consensus
Probab=73.18 E-value=2.9 Score=49.96 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=57.8
Q ss_pred HHHHHhhhhCcEEEEeeccCCC-CCcccccc--CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChH
Q psy15878 8 SLAKAAEEFKFYLEEYAGVKGQ-YPPTKRQL--NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGP 84 (693)
Q Consensus 8 ~l~~~~~~~~~~v~~~~G~~~~-~~~~~~~~--~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~ 84 (693)
+|++|| .|++|-.|+|+... ....+.|. +..||.|+.+..+ ++.+. ...-+++.++|+||+|.+-. -+..
T Consensus 683 ElKRwc--PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv---~qd~~-AFkrkrWqyLvLDEaqnIKn-fksq 755 (1958)
T KOG0391|consen 683 ELKRWC--PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLV---FQDLT-AFKRKRWQYLVLDEAQNIKN-FKSQ 755 (1958)
T ss_pred HHhhhC--CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHH---HhHHH-HHHhhccceeehhhhhhhcc-hhHH
Confidence 578887 58999999997532 12223342 3468999888753 33221 11226789999999999864 3556
Q ss_pred HHHHHHHHHhccCCCceEEEEcCcC
Q psy15878 85 ILECVVSKVLYLKKSIQIFAMSATI 109 (693)
Q Consensus 85 ~le~il~~l~~~~~~~qii~lSATl 109 (693)
.|+.++.- ..-|.++|+.|+
T Consensus 756 rWQAllnf-----nsqrRLLLtgTP 775 (1958)
T KOG0391|consen 756 RWQALLNF-----NSQRRLLLTGTP 775 (1958)
T ss_pred HHHHHhcc-----chhheeeecCCc
Confidence 67776642 234667788875
No 326
>smart00475 53EXOc 5'-3' exonuclease.
Probab=72.97 E-value=4.1 Score=41.49 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=31.3
Q ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 609 MDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 609 ~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
-.+||||+++|.+|.+. |.|++.|.++-.+ + +++..+++.++..
T Consensus 189 pGV~GIG~KtA~~Ll~~-ygsle~i~~~~~~-----~---~~~~~~~l~~~~~ 232 (259)
T smart00475 189 PGVPGIGEKTAAKLLKE-FGSLENILENLDK-----L---KKKLREKLLAHKE 232 (259)
T ss_pred CCCCCCCHHHHHHHHHH-hCCHHHHHHHHHH-----H---HHHHHHHHHhcHH
Confidence 36899999999999988 7799999764221 2 2355566665553
No 327
>KOG0338|consensus
Probab=72.76 E-value=20 Score=39.36 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=55.4
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.-..|||.||||.-+..++....+ |+.+....++..-|||+-..++.+
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~q--------------------------------laqFt~I~~~L~vGGL~lk~QE~~ 298 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQ--------------------------------LAQFTDITVGLAVGGLDLKAQEAV 298 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHH--------------------------------HHhhccceeeeeecCccHHHHHHH
Confidence 456899999999887776665443 222223447888899999998877
Q ss_pred HHHHhCCCCeEEEecch-------hhcccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTST-------LAAGVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~-------l~~Gvnlp~~~vVI~~ 290 (693)
++. ...|+|||+- =+.|+|+.++.|.|.+
T Consensus 299 LRs----~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 299 LRS----RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLD 334 (691)
T ss_pred Hhh----CCCEEEecchhHHHHhccCCCccccceeEEEec
Confidence 763 4689999982 2457788888777764
No 328
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=72.73 E-value=7.2 Score=27.90 Aligned_cols=30 Identities=33% Similarity=0.300 Sum_probs=22.2
Q ss_pred HHHHHHhcC-CCHHHHHHHhCCCchhHHHHH
Q psy15878 534 CILYDVLNF-DNHQKVAKMYGIQNSHLQNFL 563 (693)
Q Consensus 534 ~~l~~~i~e-~~~~~i~~~y~v~~g~~~~l~ 563 (693)
.++.++.++ +++...|.+||||+-.|+.-.
T Consensus 7 ~Ai~~v~~g~~S~r~AA~~ygVp~sTL~~r~ 37 (45)
T PF05225_consen 7 KAIEAVKNGKMSIRKAAKKYGVPRSTLRRRL 37 (45)
T ss_dssp HHHHHHHTTSS-HHHHHHHHT--HHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHCcCHHHHHHHH
Confidence 457778888 999999999999998887543
No 329
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=72.60 E-value=11 Score=36.44 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=40.9
Q ss_pred cchhhhhcCCCCCHHHHHH--------HHHcCCC-CH-HHHHhcChHHHHHHhc--CCCHHHHHHHHHHHHhhhhhhhhh
Q psy15878 603 PNLRALMDLPGVKIGRARQ--------LLNAGYS-SL-ELIARADAKEMVAKIR--HLPLRSARNLISAAKLHFITKMDK 670 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~--------L~~~g~~-s~-~~l~~a~~~~l~~~~~--~~~~~~a~~i~~~a~~~~~~~~~~ 670 (693)
.+.-.|.++||||+++|.+ +.+. +. +. ... ....+++...+. |+.++.|.+++..+...-. .+
T Consensus 105 ~D~~~L~~vpGIGkKtAerIilELk~Ki~~~-~~~~~~~~~-~~~~~e~~~aL~~LGy~~~~a~~ai~~~~~~~~---~~ 179 (194)
T PRK14605 105 GNAELLSTIPGIGKKTASRIVLELKDKIAKN-WEAGVLSQV-TEANSDILATLTALGYSSSEAAKAISSLGDNGD---LP 179 (194)
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHHHHHHHhh-hhccccccc-cchHHHHHHHHHHcCCCHHHHHHHHHHhhccCC---CC
Confidence 3556788999999999999 5331 10 00 000 001234444443 5778888888887742212 34
Q ss_pred HHHHHHHHHHHH
Q psy15878 671 VEAMKNLIQNLQ 682 (693)
Q Consensus 671 ~~~~~~~~~~~~ 682 (693)
.+++-.++...|
T Consensus 180 ~~~~ir~aLk~l 191 (194)
T PRK14605 180 LEERIKLALNYF 191 (194)
T ss_pred HHHHHHHHHHHh
Confidence 444444444433
No 330
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=72.16 E-value=9 Score=41.70 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=38.8
Q ss_pred cCCCCcccE-EEEecccccCCCCChHHHH---HHHHHHhccCCCceEEEEcCcCCC-HHHHHHhhcC
Q psy15878 60 ENRIDEIGL-IVIDEFHMLNEPQRGPILE---CVVSKVLYLKKSIQIFAMSATIGN-INALSTFIEG 121 (693)
Q Consensus 60 ~~~l~~i~l-vVvDE~H~l~d~~rg~~le---~il~~l~~~~~~~qii~lSATl~n-~~~la~~l~~ 121 (693)
-+.+++-++ ++|||||++.+..-...++ .++..+| ++.+=+.+.|-++.+ ++.+-..||.
T Consensus 249 vGD~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIR--SKGVGv~fvTQ~P~DiP~~VL~QLGn 313 (502)
T PF05872_consen 249 VGDLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIR--SKGVGVYFVTQNPTDIPDDVLGQLGN 313 (502)
T ss_pred CCCCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhh--ccCceEEEEeCCCCCCCHHHHHhhhh
Confidence 345566666 5599999998755444444 4444333 456778888888776 5666666654
No 331
>PRK10880 adenine DNA glycosylase; Provisional
Probab=71.72 E-value=6 Score=42.11 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=47.3
Q ss_pred HHHHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCccccccc
Q psy15878 620 RQLLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVHNT 692 (693)
Q Consensus 620 ~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (693)
.+|.+. |-|+++|+.|+.+++.+.+.|+|. +.|++|.+.|+.+.. +..-.+ .+..+.|.++|||=+-|
T Consensus 53 ~rl~~~-fPt~~~La~a~~eel~~~~~glGyy~RAr~L~~~A~~i~~---~~~g~~-p~~~~~L~~LpGIG~~T 121 (350)
T PRK10880 53 ERFMAR-FPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVAT---LHGGEF-PETFEEVAALPGVGRST 121 (350)
T ss_pred HHHHHH-CcCHHHHHCcCHHHHHHHHHcCChHHHHHHHHHHHHHHHH---HhCCCc-hhhHHHHhcCCCccHHH
Confidence 445554 889999999999999998888775 358889888887744 111111 24456677888886544
No 332
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=71.21 E-value=6.8 Score=37.67 Aligned_cols=58 Identities=19% Similarity=0.107 Sum_probs=33.4
Q ss_pred cchhhhhcCCCCCHHHHHHHHHc--C-CCCHH---HHHhcChHHHHHHhc--CCCHHHHHHHHHHHH
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNA--G-YSSLE---LIARADAKEMVAKIR--HLPLRSARNLISAAK 661 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~--g-~~s~~---~l~~a~~~~l~~~~~--~~~~~~a~~i~~~a~ 661 (693)
.+.-.| ++||||+++|+++.-. | +.... .-.....++...++. |+.++.|+++++.+.
T Consensus 105 ~D~~~L-~vpGIGkKtAerIilELk~K~~~~~~~~~~~~~~~~e~~~aL~~LGy~~~ea~~al~~v~ 170 (186)
T PRK14600 105 EDKAAL-KVNGIGEKLINRIITELQYKVSKLEINETNFIIINDDALAALISLGYEKTKAFNAIQKIK 170 (186)
T ss_pred CCHhhe-ECCCCcHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 344567 9999999999998632 1 11000 000001234555554 566788888888774
No 333
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=70.56 E-value=3.8 Score=34.59 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=37.8
Q ss_pred hcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 609 MDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 609 ~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
++--|+++..|.+||+. |=.++ ++.+.+|=.|...+.|+|.++|.+|....+
T Consensus 15 L~~~gl~~~~a~kl~~~yg~~ai-~~l~~nPY~L~~~i~gi~F~~aD~iA~~~g 67 (94)
T PF14490_consen 15 LQEYGLSPKLAMKLYKKYGDDAI-EILKENPYRLIEDIDGIGFKTADKIALKLG 67 (94)
T ss_dssp HHHTT--HHHHHHHHHHH-TTHH-HHHHH-STCCCB-SSSSBHHHHHHHHHTTT
T ss_pred HHHcCCCHHHHHHHHHHHhHHHH-HHHHHChHHHHHHccCCCHHHHHHHHHHcC
Confidence 33448999999999999 87666 455568888888788999999999988753
No 334
>PRK14976 5'-3' exonuclease; Provisional
Probab=70.15 E-value=6 Score=40.87 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.8
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHh
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIAR 635 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~ 635 (693)
.+||||+++|.+|.+. |.|+++|.+
T Consensus 195 GVpGIG~KtA~~LL~~-~gsle~i~~ 219 (281)
T PRK14976 195 GVKGIGPKTAIKLLNK-YGNIENIYE 219 (281)
T ss_pred CCCcccHHHHHHHHHH-cCCHHHHHH
Confidence 6999999999999988 889999975
No 335
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=69.77 E-value=6.9 Score=36.45 Aligned_cols=62 Identities=21% Similarity=0.070 Sum_probs=43.0
Q ss_pred CCHHHHHhcChHHHHHHhcCCC-HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCccccc
Q psy15878 628 SSLELIARADAKEMVAKIRHLP-LRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVH 690 (693)
Q Consensus 628 ~s~~~l~~a~~~~l~~~~~~~~-~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (693)
-|+++|+.++++++...+.+.| ...|+.|.+.|+.+......... =.+++.+.|.+++||=.
T Consensus 31 pt~~~l~~~~~~~l~~~~~~~G~~~kA~~i~~~a~~~~~~~~~~~~-~~~~~~~~L~~l~GIG~ 93 (158)
T cd00056 31 PTPEALAAADEEELRELIRSLGYRRKAKYLKELARAIVEGFGGLVL-DDPDAREELLALPGVGR 93 (158)
T ss_pred CCHHHHHCCCHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCccC-CCcccHHHHHcCCCCCH
Confidence 7999999999999999763332 57788999988876551111110 12567778888888854
No 336
>TIGR03252 uncharacterized HhH-GPD family protein. This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).
Probab=69.73 E-value=12 Score=35.48 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=16.3
Q ss_pred hhhhhcCCCCCHHHHHHHHH
Q psy15878 605 LRALMDLPGVKIGRARQLLN 624 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~ 624 (693)
.-+|+.+||||+++|-....
T Consensus 114 re~Ll~LpGVG~KTAnvVL~ 133 (177)
T TIGR03252 114 LRRLKALPGFGKQKAKIFLA 133 (177)
T ss_pred HHHHHcCCCCCHHHHHHHHH
Confidence 35799999999999886544
No 337
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=69.35 E-value=25 Score=40.22 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=63.9
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.|.|+..-+||-=-|+.-+..+.+ .+ ..+...|+++.|++....|+.+
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~--~l------------------------------~~~~i~V~lLtG~~kgk~r~~~ 357 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRK--WL------------------------------EPLGIRVALLTGSLKGKARKEI 357 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHH--Hh------------------------------hhcCCeEEEeecccchhHHHHH
Confidence 788999999997766666666655 22 0111449999999999999999
Q ss_pred HHHHhCCCCeEEEecch-hhcccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTST-LAAGVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~-l~~Gvnlp~~~vVI~~ 290 (693)
.+...+|.++++|.|-. +...|++.+...||-+
T Consensus 358 l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiD 391 (677)
T COG1200 358 LEQLASGEIDIVVGTHALIQDKVEFHNLGLVIID 391 (677)
T ss_pred HHHHhCCCCCEEEEcchhhhcceeecceeEEEEe
Confidence 99999999999999965 4568999997776654
No 338
>KOG1921|consensus
Probab=68.93 E-value=8.3 Score=38.02 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=25.1
Q ss_pred hccCccchhhhhcCCCCCHHHHHHHHHcCCCC
Q psy15878 598 MYCRAPNLRALMDLPGVKIGRARQLLNAGYSS 629 (693)
Q Consensus 598 ~~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s 629 (693)
.-.+|.++-+|+.+|||||+.|-.-..-+...
T Consensus 151 ~gDIP~~v~dLlsLPGVGPKMa~L~m~~AWn~ 182 (286)
T KOG1921|consen 151 DGDIPDTVEDLLSLPGVGPKMAHLTMQVAWNK 182 (286)
T ss_pred CCCCchhHHHHhcCCCCchHHHHHHHHHHhcc
Confidence 34699999999999999999987665543333
No 339
>KOG0386|consensus
Probab=68.58 E-value=12 Score=44.34 Aligned_cols=83 Identities=18% Similarity=0.083 Sum_probs=64.2
Q ss_pred eEEEcCCCCHHHHHHHHHHHhCC---CCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCC
Q psy15878 242 VAYHHADLTAGERRLIEEAYLAG---TLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQES 318 (693)
Q Consensus 242 v~~~h~~l~~~eR~~ve~~f~~g---~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~ 318 (693)
-.-+.|....++|-..++.|..- -...|.+|-....|+|+...+-||.++. ...+....|+.-||-|-|....
T Consensus 753 YlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifds----dwnp~~d~qaqdrahrigq~~e 828 (1157)
T KOG0386|consen 753 YLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDS----DWNPHQDLQAQDRAHRIGQKKE 828 (1157)
T ss_pred eeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecC----CCCchhHHHHHHHHHHhhchhh
Confidence 44567788889999999999853 3467889999999999997655554442 3578889999999999997766
Q ss_pred CcEEEEeccc
Q psy15878 319 GESIMLCKTM 328 (693)
Q Consensus 319 G~~i~l~~~~ 328 (693)
-+++.+++-.
T Consensus 829 vRv~rl~tv~ 838 (1157)
T KOG0386|consen 829 VRVLRLITVN 838 (1157)
T ss_pred eeeeeeehhh
Confidence 7777776654
No 340
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=68.27 E-value=4.6 Score=40.75 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=29.0
Q ss_pred CCCcEEEEcccchHHHHhchhccCCCCcccEEEEeccc
Q psy15878 38 NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFH 75 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H 75 (693)
...+|.|+||+++..|+.. +.-.++++.+||||--|
T Consensus 176 ~~~~i~vGTP~Rl~kLle~--~~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 176 TRVHIAVGTPGRLSKLLEN--GALSLSNLKRIVLDWSY 211 (252)
T ss_pred CCceEEEeChHHHHHHHHc--CCCCcccCeEEEEcCCc
Confidence 4789999999998777754 33456999999999876
No 341
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=67.55 E-value=14 Score=35.78 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=33.7
Q ss_pred chhhhhcCCCCCHHHHHHHHHc---CCCCHHHH-----HhcChHHHHHHhc--CCCHHHHHHHHHHHH
Q psy15878 604 NLRALMDLPGVKIGRARQLLNA---GYSSLELI-----ARADAKEMVAKIR--HLPLRSARNLISAAK 661 (693)
Q Consensus 604 el~~l~~i~gi~~~~a~~L~~~---g~~s~~~l-----~~a~~~~l~~~~~--~~~~~~a~~i~~~a~ 661 (693)
+.-.|.++||||+++|.++.-. -+.....+ +....+++...+. |+.++.|++.+..+.
T Consensus 105 d~~~L~~ipGiGkKtAerIileLk~k~~~~~~~~~~~~~~~~~~e~~~aL~~LGy~~~e~~~ai~~~~ 172 (191)
T TIGR00084 105 EVKALVKIPGVGKKTAERLLLELKGKLKGNKNLEMFTPTEAARDELFEALVSLGYKPQEIQQALKKIK 172 (191)
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHhhhcccccccccccccchHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4456789999999999988521 11100000 1111245555554 566777888887774
No 342
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.28 E-value=22 Score=39.70 Aligned_cols=61 Identities=8% Similarity=0.181 Sum_probs=49.8
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.++.+||.+|++.-++.....|...+ ..+.+.+++.+..++..+
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~g------------------------------------i~~~~l~~~~~~~~~~~i 93 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASG------------------------------------IPATFLNSSQSKEQQKNV 93 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcC------------------------------------CcEEEEeCCCCHHHHHHH
Confidence 56789999999988777666665422 127788999999999999
Q ss_pred HHHHhCCCCeEEEecch
Q psy15878 258 EEAYLAGTLQIICCTST 274 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~ 274 (693)
....+.|..+++++|+-
T Consensus 94 ~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 94 LTDLKDGKIKLLYVTPE 110 (470)
T ss_pred HHHHhcCCCCEEEECHH
Confidence 99999999999999974
No 343
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=66.92 E-value=3.1 Score=43.18 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=26.3
Q ss_pred cCCCcEEEEcccchHHHHhchh-c-cCCCCcccEEEEecccccCC
Q psy15878 37 LNKKSIYICTIEKGSKLIGSLI-Q-ENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 37 ~~~~~IiV~Tpek~~~Ll~~l~-~-~~~l~~i~lvVvDE~H~l~d 79 (693)
...+||||++..-+ +.... . .+..-+-.+|||||||.+.+
T Consensus 209 ~~~Adivi~ny~yl---l~~~~r~~~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00488 209 IEFANVVVLPYQYL---LDPKIRQALSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred hhcCCEEEECHHHH---hcHHHHHHhcccccccEEEEeCccChHH
Confidence 37799999998754 33221 1 11122478999999998753
No 344
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=66.92 E-value=3.1 Score=43.18 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=26.3
Q ss_pred cCCCcEEEEcccchHHHHhchh-c-cCCCCcccEEEEecccccCC
Q psy15878 37 LNKKSIYICTIEKGSKLIGSLI-Q-ENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 37 ~~~~~IiV~Tpek~~~Ll~~l~-~-~~~l~~i~lvVvDE~H~l~d 79 (693)
...+||||++..-+ +.... . .+..-+-.+|||||||.+.+
T Consensus 209 ~~~Adivi~ny~yl---l~~~~r~~~~~~l~~~~lIiDEAHnL~d 250 (289)
T smart00489 209 IEFANVVVLPYQYL---LDPKIRQALSIELKDSIVIFDEAHNLDN 250 (289)
T ss_pred hhcCCEEEECHHHH---hcHHHHHHhcccccccEEEEeCccChHH
Confidence 37799999998754 33221 1 11122478999999998753
No 345
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=66.74 E-value=23 Score=34.50 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=41.0
Q ss_pred cchhhhhcCCCCCHHHHHHHHHc--C-CCCH----------HHHHhcChHHHHHHhc--CCCHHHHHHHHHHHHh-hhhh
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNA--G-YSSL----------ELIARADAKEMVAKIR--HLPLRSARNLISAAKL-HFIT 666 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~--g-~~s~----------~~l~~a~~~~l~~~~~--~~~~~~a~~i~~~a~~-~~~~ 666 (693)
.+.-.|.++||||+++|.++.-. | +... ........++...++. |+.++.|++.++.+-. ...
T Consensus 104 ~D~~~L~kvpGIGkKtAerIilELkdK~~~~~~~~~~~~~~~~~~~~~~~ea~~AL~~LGy~~~ea~~al~~i~~~~~~- 182 (197)
T PRK14603 104 GDARLLTSASGVGKKLAERIALELKGKVPEHLLAGPAGGGGTKVSSTAAEDAVLALLALGFREAQVRSVVAELLAQNPE- 182 (197)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcccccccccccccCCccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-
Confidence 45567889999999999987622 1 1100 0000001244555554 5667778887776631 112
Q ss_pred hhhhHHHHHHHHHHHH
Q psy15878 667 KMDKVEAMKNLIQNLQ 682 (693)
Q Consensus 667 ~~~~~~~~~~~~~~~~ 682 (693)
.+.+++-.++...|
T Consensus 183 --~~~e~lir~aLk~l 196 (197)
T PRK14603 183 --ASAQTLIRKALKRL 196 (197)
T ss_pred --CCHHHHHHHHHHhc
Confidence 34555555554443
No 346
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=66.64 E-value=16 Score=44.49 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=63.6
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.++||.|.+||-=-|+.-++.++++ + . -.+..|..+..=-+..+++.+
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeR--F-----------------~-------------~fPV~I~~LSRF~s~kE~~~i 689 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKER--F-----------------A-------------GFPVRIEVLSRFRSAKEQKEI 689 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHH--h-----------------c-------------CCCeeEEEecccCCHHHHHHH
Confidence 8999999999987777766666651 1 0 012447777777889999999
Q ss_pred HHHHhCCCCeEEEec-chhhcccCCCCcEEEEe
Q psy15878 258 EEAYLAGTLQIICCT-STLAAGVNLPAQRVIIR 289 (693)
Q Consensus 258 e~~f~~g~i~VLvaT-~~l~~Gvnlp~~~vVI~ 289 (693)
.+..++|+++|||.| ..|..+|-+.+...+|-
T Consensus 690 l~~la~G~vDIvIGTHrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 690 LKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred HHHHhcCCccEEEechHhhCCCcEEecCCeEEE
Confidence 999999999999999 67888899999776655
No 347
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg). All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily.
Probab=66.60 E-value=15 Score=38.55 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=45.3
Q ss_pred CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhh--hhHHHH----HHHHHHHHhcCcccccc
Q psy15878 626 GYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKM--DKVEAM----KNLIQNLQKNYDNIVHN 691 (693)
Q Consensus 626 g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~ 691 (693)
-|-|+++|+.++.++..+.+ |+|.+ |+.|++.|+.+..-.. ...+++ .+++.+.|.+++||=.-
T Consensus 162 ~FPtp~~La~~~~e~~Lr~~-G~g~R-a~~I~~~A~~i~~~~~~~~~l~~l~~~~~~~~~~~L~~l~GIG~~ 231 (310)
T TIGR00588 162 GFPSLHALTGPEAEAHLRKL-GLGYR-ARYIRETARALLEEQGGRAWLQQIRGASYEDAREALCELPGVGPK 231 (310)
T ss_pred cCCCHHHHhCCChHHHHHHc-CCHHH-HHHHHHHHHHHHhccCCchhHHhhccCChHHHHHHHHhCCCccHH
Confidence 38899999998877656656 89876 9999999987755111 112233 35678888889998543
No 348
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=65.71 E-value=9.6 Score=29.56 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=17.0
Q ss_pred cchhhhhcCCCCCHHHHHHHHHc
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNA 625 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~ 625 (693)
...-+|.++||||++.|..+++-
T Consensus 32 a~~e~L~~i~gIG~~~A~si~~f 54 (64)
T PF12826_consen 32 ASVEELSAIPGIGPKIAQSIYEF 54 (64)
T ss_dssp --HHHHCTSTT--HHHHHHHHHH
T ss_pred cCHHHHhccCCcCHHHHHHHHHH
Confidence 34568899999999999999976
No 349
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=65.02 E-value=12 Score=27.18 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=24.7
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVTS 567 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~~~~ 567 (693)
+..+.+..+|++.+|++++.+.++...|-
T Consensus 17 y~~~~t~~eIa~~lg~s~~~V~~~~~~al 45 (50)
T PF04545_consen 17 YFEGLTLEEIAERLGISRSTVRRILKRAL 45 (50)
T ss_dssp HTST-SHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHCCcHHHHHHHHHHHH
Confidence 48899999999999999999998877664
No 350
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=64.91 E-value=26 Score=40.43 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=49.7
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.++.++|.+|++.-++.....|...+ ..+.++|++++..++..+
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~g------------------------------------i~~~~~~s~~~~~~~~~~ 95 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAG------------------------------------VAAAYLNSTLSAKEQQDI 95 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcC------------------------------------CcEEEEeCCCCHHHHHHH
Confidence 56778999999887776666665522 238899999999999999
Q ss_pred HHHHhCCCCeEEEecch
Q psy15878 258 EEAYLAGTLQIICCTST 274 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~ 274 (693)
.+....|..++++.|+-
T Consensus 96 ~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 96 EKALVNGELKLLYVAPE 112 (591)
T ss_pred HHHHhCCCCCEEEEChh
Confidence 99999999999999864
No 351
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=64.42 E-value=16 Score=35.40 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=41.8
Q ss_pred cchhhhhcCCCCCHHHHHHHHHc--CCCCHHHH-----HhcC--hHHHHHHhc--CCCHHHHHHHHHHHHhhhhhhhhhH
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNA--GYSSLELI-----ARAD--AKEMVAKIR--HLPLRSARNLISAAKLHFITKMDKV 671 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~--g~~s~~~l-----~~a~--~~~l~~~~~--~~~~~~a~~i~~~a~~~~~~~~~~~ 671 (693)
.+.-.|.++||||+++|.++.-. |--...++ ...+ .++...++. |+.++.|++.+..+...-. .+.
T Consensus 105 ~D~~~L~kvpGIGkKtAerIilELk~K~~~~~~~~~~~~~~~~~~~e~~~aL~~LGy~~~ea~~ai~~i~~~~~---~~~ 181 (195)
T PRK14604 105 GDVARLARVPGIGKKTAERIVLELKGKIDVRQLSGSTSPAVSALDRELSEILISLGYSAAEAAAAIAALPSDAP---PDL 181 (195)
T ss_pred CCHHHHhhCCCCCHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHcCCCHHHHHHHHHHHhhcCC---CCH
Confidence 34566789999999999987643 11000000 0011 245555554 5667778888877742211 345
Q ss_pred HHHHHHHHHHH
Q psy15878 672 EAMKNLIQNLQ 682 (693)
Q Consensus 672 ~~~~~~~~~~~ 682 (693)
+++-.++...|
T Consensus 182 ~~~ir~aLk~l 192 (195)
T PRK14604 182 EERLRLALRYF 192 (195)
T ss_pred HHHHHHHHHHh
Confidence 55555444443
No 352
>KOG0343|consensus
Probab=64.17 E-value=9.1 Score=42.35 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=21.3
Q ss_pred cCCceEEEeCChHHHHHHHHHhhh
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQF 201 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~ 201 (693)
.|-.+||..|||.-|-.+.+.|.+
T Consensus 140 DGlGalIISPTRELA~QtFevL~k 163 (758)
T KOG0343|consen 140 DGLGALIISPTRELALQTFEVLNK 163 (758)
T ss_pred CCceeEEecchHHHHHHHHHHHHH
Confidence 677899999999999999888876
No 353
>KOG0388|consensus
Probab=63.26 E-value=5.8 Score=44.99 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=54.2
Q ss_pred HHHHHHhhhhCcEEEEeeccCCCCCcccc---------ccCCCcEEEEcccchHHHHhchhccCCC--CcccEEEEeccc
Q psy15878 7 QSLAKAAEEFKFYLEEYAGVKGQYPPTKR---------QLNKKSIYICTIEKGSKLIGSLIQENRI--DEIGLIVIDEFH 75 (693)
Q Consensus 7 ~~l~~~~~~~~~~v~~~~G~~~~~~~~~~---------~~~~~~IiV~Tpek~~~Ll~~l~~~~~l--~~i~lvVvDE~H 75 (693)
+++.+|+ ..++|.-|.|+..+.....+ .....||+|++++.+- .+ ...+ -+..+.|+|||+
T Consensus 634 qEisrFl--P~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvV--tD----eky~qkvKWQYMILDEAQ 705 (1185)
T KOG0388|consen 634 QEISRFL--PSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVV--TD----EKYLQKVKWQYMILDEAQ 705 (1185)
T ss_pred HHHHHhC--ccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeee--ch----HHHHHhhhhhheehhHHH
Confidence 3445554 36788889998765443332 2256899999998641 11 1223 245689999999
Q ss_pred ccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCC
Q psy15878 76 MLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIG 110 (693)
Q Consensus 76 ~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~ 110 (693)
-+-. +....|..+++- .-.-.++|+.|+-
T Consensus 706 AIKS-SsS~RWKtLLsF-----~cRNRLLLTGTPI 734 (1185)
T KOG0388|consen 706 AIKS-SSSSRWKTLLSF-----KCRNRLLLTGTPI 734 (1185)
T ss_pred Hhhh-hhhhHHHHHhhh-----hccceeeecCCcc
Confidence 8864 334445444432 1123478888864
No 354
>KOG0347|consensus
Probab=62.03 E-value=12 Score=41.40 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=46.2
Q ss_pred cCCc--eEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHH
Q psy15878 178 GNLM--VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERR 255 (693)
Q Consensus 178 ~~~~--vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~ 255 (693)
.+.+ .|||+|||.-|..+...|.. .. . .-...++.+.|||+...++
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~a--i~------------------~------------~t~i~v~si~GGLavqKQq 307 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKA--IA------------------E------------KTQIRVASITGGLAVQKQQ 307 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHH--hc------------------c------------ccCeEEEEeechhHHHHHH
Confidence 4455 89999999999998888865 22 0 0113489999999999998
Q ss_pred HHHHHHhCCCCeEEEecc
Q psy15878 256 LIEEAYLAGTLQIICCTS 273 (693)
Q Consensus 256 ~ve~~f~~g~i~VLvaT~ 273 (693)
.+++. .-.|+|||+
T Consensus 308 RlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 308 RLLNQ----RPDIVVATP 321 (731)
T ss_pred HHHhc----CCCEEEecc
Confidence 88876 568999997
No 355
>PF13173 AAA_14: AAA domain
Probab=60.81 E-value=5.4 Score=35.69 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=25.9
Q ss_pred cccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCC
Q psy15878 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIG 110 (693)
Q Consensus 65 ~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~ 110 (693)
.-.+|++||+|.+.+ +...+..+....++.++++.+-...
T Consensus 61 ~~~~i~iDEiq~~~~------~~~~lk~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD------WEDALKFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhcc------HHHHHHHHHHhccCceEEEEccchH
Confidence 568999999998853 4444555443345677777655543
No 356
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs.
Probab=60.76 E-value=6.8 Score=26.56 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.3
Q ss_pred hcCCCCCHHHHHHHHHc
Q psy15878 609 MDLPGVKIGRARQLLNA 625 (693)
Q Consensus 609 ~~i~gi~~~~a~~L~~~ 625 (693)
-.+||||+++|.+|.+.
T Consensus 19 ~Gv~giG~ktA~~ll~~ 35 (36)
T smart00279 19 PGVKGIGPKTALKLLRE 35 (36)
T ss_pred CCCCcccHHHHHHHHHh
Confidence 47899999999998764
No 357
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=60.73 E-value=49 Score=26.12 Aligned_cols=63 Identities=16% Similarity=0.006 Sum_probs=38.6
Q ss_pred HHHHHHHcCccHHHHHHHhcC----CchhhHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHhCC-CchhHHHHH
Q psy15878 497 TLRVAEALGVTENLVALNVTG----KLKDEKKALLCRFFHACILYDVLN-FDNHQKVAKMYGI-QNSHLQNFL 563 (693)
Q Consensus 497 ~~~~~~~~gi~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~l~~~i~-e~~~~~i~~~y~v-~~g~~~~l~ 563 (693)
...+++.+|++..++.+.+.. ..+ +++...+...++..+.+ +.++.+||...|+ ++..+.+..
T Consensus 4 ~~~la~~~~~s~~~l~~~f~~~~~~s~~----~~~~~~r~~~a~~~l~~~~~~~~~ia~~~g~~s~~~f~r~F 72 (84)
T smart00342 4 LEDLAEALGMSPRHLQRLFKKETGTTPK----QYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAF 72 (84)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhCcCHH----HHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCChHHHHHHH
Confidence 346788889998888766543 222 22222333333333333 3799999999999 777666544
No 358
>KOG2875|consensus
Probab=60.62 E-value=21 Score=35.96 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHh-cChHHHHH
Q psy15878 565 VTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIAR-ADAKEMVA 643 (693)
Q Consensus 565 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~-a~~~~l~~ 643 (693)
+.+++.+|+-+||...|+ -++++.|+. -+||-|++.|+. ....+|-+
T Consensus 131 NIaRIT~Mve~fc~~fG~------------------------~i~~~dg~~--------~h~FPsl~~L~g~~~Ea~LR~ 178 (323)
T KOG2875|consen 131 NIARITGMVERFCQAFGP------------------------RIIQLDGVD--------YHGFPSLQALAGPEVEAELRK 178 (323)
T ss_pred cHHHHHHHHHHHHHhhCc------------------------ceEeecCcc--------cccCccHHHhcCcHhHHHHHH
Confidence 556666777777777763 356777754 248999999984 44445554
Q ss_pred HhcCCCHHHHHHHHHHHHhhhhhhhhhHH---------HHHHHHHHHHhcCcccc
Q psy15878 644 KIRHLPLRSARNLISAAKLHFITKMDKVE---------AMKNLIQNLQKNYDNIV 689 (693)
Q Consensus 644 ~~~~~~~~~a~~i~~~a~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 689 (693)
+ |||-+ |+=|.+.|+.+.. +.+. .-.|++.+.|--+|||-
T Consensus 179 -~-gfGYR-AkYI~~ta~~l~~---~~g~~~wLqsl~~~~yeear~~L~~lpGVG 227 (323)
T KOG2875|consen 179 -L-GFGYR-AKYISATARALQE---KQGGLAWLQSLRKSSYEEAREALCSLPGVG 227 (323)
T ss_pred -c-Ccchh-HHHHHHHHHHHHH---hcccchHHHHHhcccHHHHHHHHhcCCCCc
Confidence 4 89976 7888888876665 3333 22456778888888873
No 359
>PF02961 BAF: Barrier to autointegration factor; InterPro: IPR004122 Barrier-to-autointegration factor (BAF) is an essential protein that is highly conserved in metazoan evolution, and which may act as a DNA-bridging protein []. BAF binds directly to double-stranded DNA, to transcription activators, and to inner nuclear membrane proteins, including lamin A filament proteins that anchor nuclear-pore complexes in place, and nuclear LEM-domain proteins that bind to laminins filaments and chromatin. New findings suggest that BAF has structural roles in nuclear assembly and chromatin organisation, represses gene expression and might interlink chromatin structure, nuclear architecture and gene regulation in metazoans []. BAF can be exploited by retroviruses to act as a host component of pre-integration complexes, which promote the integration of the retroviral DNA into the host chromosome by preventing autointegration of retroviral DNA []. BAF might contribute to the assembly or activity of retroviral pre-integration complexes through direct binding to the retroviral proteins p55 Gag and matrix, as well as to DNA.; GO: 0003677 DNA binding; PDB: 2ODG_A 2BZF_A 2EZX_B 2EZY_B 1QCK_B 1CI4_B 2EZZ_B.
Probab=60.46 E-value=9.1 Score=31.56 Aligned_cols=31 Identities=13% Similarity=0.300 Sum_probs=21.7
Q ss_pred chhhhhcCCCCCHHHHHHHHHcCCCCHHHHH
Q psy15878 604 NLRALMDLPGVKIGRARQLLNAGYSSLELIA 634 (693)
Q Consensus 604 el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~ 634 (693)
+--+...+||||+..+++|.+.||.-...+.
T Consensus 17 GeK~V~~laGIG~~lg~~L~~~GfdKAy~vL 47 (89)
T PF02961_consen 17 GEKPVTELAGIGPVLGKRLEEKGFDKAYVVL 47 (89)
T ss_dssp TT-BGGGSTT--HHHHHHHHHTT--BHHHHH
T ss_pred CCCCccccCCcCHHHHHHHHHCCCcHHHHHh
Confidence 4456779999999999999999998876663
No 360
>KOG0298|consensus
Probab=60.01 E-value=18 Score=44.10 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=62.3
Q ss_pred HHHHHHHhhh--hCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhcc---C----------C------C-
Q psy15878 6 YQSLAKAAEE--FKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE---N----------R------I- 63 (693)
Q Consensus 6 ~~~l~~~~~~--~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~---~----------~------l- 63 (693)
.+||.+.... .+++|-.|.|-....-.....+-++|||++|+..+- +.+... + . |
T Consensus 433 ~QW~~EI~kH~~~~lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr---~El~hte~~~~~R~lR~qsr~~~~~SPL~ 509 (1394)
T KOG0298|consen 433 MQWFEEIHKHISSLLKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILR---NELYHTEDFGSDRQLRHQSRYMRPNSPLL 509 (1394)
T ss_pred HHHHHHHHHhccccceEEEEechhhhcccCchhhhccCEEEeehHHHH---hHhhcccccCChhhhhcccCCCCCCCchH
Confidence 4566665332 347888888854332222244578999999998753 222111 0 0 1
Q ss_pred -CcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCc----CCCHHHHHHhhcCC
Q psy15878 64 -DEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSAT----IGNINALSTFIEGI 122 (693)
Q Consensus 64 -~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSAT----l~n~~~la~~l~~~ 122 (693)
-.+=-|++|||+|+-. -.......+.++ +....-+.|.| +.+.--+-.||+..
T Consensus 510 ~v~wWRIclDEaQMves--ssS~~a~M~~rL----~~in~W~VTGTPiq~Iddl~~Ll~fLk~~ 567 (1394)
T KOG0298|consen 510 MVNWWRICLDEAQMVES--SSSAAAEMVRRL----HAINRWCVTGTPIQKIDDLFPLLEFLKLP 567 (1394)
T ss_pred HHHHHHHhhhHHHhhcc--hHHHHHHHHHHh----hhhceeeecCCchhhhhhhHHHHHHhcCC
Confidence 1122479999999864 333444445555 34456789999 34444455666654
No 361
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=59.81 E-value=22 Score=27.48 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIA 428 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG 428 (693)
...+..+++.|.+.|+|+...+ + ..+.+|+.|
T Consensus 32 ~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 32 KSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 3456788999999999975322 2 258999988
No 362
>PF13518 HTH_28: Helix-turn-helix domain
Probab=59.67 E-value=16 Score=26.53 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=23.4
Q ss_pred HHHHhcCCCHHHHHHHhCCCchhHHHHHH
Q psy15878 536 LYDVLNFDNHQKVAKMYGIQNSHLQNFLN 564 (693)
Q Consensus 536 l~~~i~e~~~~~i~~~y~v~~g~~~~l~~ 564 (693)
+..+.++.+..++|..|||++..+++..+
T Consensus 6 v~~~~~g~s~~~~a~~~gis~~tv~~w~~ 34 (52)
T PF13518_consen 6 VELYLEGESVREIAREFGISRSTVYRWIK 34 (52)
T ss_pred HHHHHcCCCHHHHHHHHCCCHhHHHHHHH
Confidence 44456788999999999999988886544
No 363
>PF14502 HTH_41: Helix-turn-helix domain
Probab=58.61 E-value=10 Score=27.48 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=16.1
Q ss_pred CHHHHHHHhCCCchhHHH
Q psy15878 544 NHQKVAKMYGIQNSHLQN 561 (693)
Q Consensus 544 ~~~~i~~~y~v~~g~~~~ 561 (693)
++.+.+++|++++|.+|+
T Consensus 8 tI~e~~~~~~vs~GtiQ~ 25 (48)
T PF14502_consen 8 TISEYSEKFGVSRGTIQN 25 (48)
T ss_pred CHHHHHHHhCcchhHHHH
Confidence 577889999999999994
No 364
>PF12833 HTH_18: Helix-turn-helix domain; PDB: 2K9S_A 3LSG_C 3OIO_A 1D5Y_B 3GBG_A 3OOU_A 1BL0_A 1XS9_A 3MN2_B 3MKL_B ....
Probab=58.35 E-value=23 Score=28.53 Aligned_cols=56 Identities=14% Similarity=0.048 Sum_probs=33.2
Q ss_pred HHHHcCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHhCCC
Q psy15878 500 VAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVL--NFDNHQKVAKMYGIQ 555 (693)
Q Consensus 500 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i--~e~~~~~i~~~y~v~ 555 (693)
+|+.+|++..++.+.+.........+++.+.+.-.+...++ .+.|+.+|+.++|.+
T Consensus 1 lA~~~~~s~~~l~~~f~~~~g~s~~~~~~~~R~~~a~~~L~~~~~~~i~~ia~~~Gf~ 58 (81)
T PF12833_consen 1 LADELGMSERYLSRIFKKETGMSFKQYLRELRLQRAKELLRQNTDLSIAEIAEECGFS 58 (81)
T ss_dssp HHHHCTS-HHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHTT--HHHHHHHTT-S
T ss_pred ChHHhCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHcCCC
Confidence 35677888877766554300001125666666667777776 489999999999987
No 365
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=58.17 E-value=30 Score=38.21 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=51.7
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
..++||.+||+.-+..+++.+.. +. ......+..++||.+...+..+.
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~--l~------------------------------~~~~~~v~~~~gg~~~~~~~~~l 120 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARE--LA------------------------------KHTHLDIATITGGVAYMNHAEVF 120 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHH--HH------------------------------ccCCcEEEEEECCCCHHHHHHHh
Confidence 35799999999999888877655 11 01123488899999887765443
Q ss_pred HHHhCCCCeEEEecch------hhcccCCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTST------LAAGVNLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~~------l~~Gvnlp~~~vVI~~ 290 (693)
.+..+|||+|+- ....+++..+.+||.+
T Consensus 121 ----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViD 154 (434)
T PRK11192 121 ----SENQDIVVATPGRLLQYIKEENFDCRAVETLILD 154 (434)
T ss_pred ----cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEE
Confidence 356789999972 1234677777766654
No 366
>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses []. However, their precise function in this regard is as yet unknown.
Probab=58.04 E-value=28 Score=35.89 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=47.1
Q ss_pred ccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHh---cChHHHHHHhc-CCCHHHHHHHHHHHHhh
Q psy15878 602 APNLRALMDLPGVKIGRARQLLNAGYSSLELIAR---ADAKEMVAKIR-HLPLRSARNLISAAKLH 663 (693)
Q Consensus 602 ~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~---a~~~~l~~~~~-~~~~~~a~~i~~~a~~~ 663 (693)
..|++-|-.|..-| ...+.|-++||.|++|+.+ .+|..|-+++. |++.+..+.+++-|+..
T Consensus 161 ~DeVwRLe~Igk~G-~~hk~L~~~~I~tV~dFl~l~~~d~~~Lr~ilg~~ms~k~We~~v~HA~tC 225 (299)
T PF07887_consen 161 DDEVWRLEKIGKDG-AFHKRLKKNGINTVEDFLKLLNKDPQKLREILGSGMSNKMWETTVEHAKTC 225 (299)
T ss_pred CCchhhhhhccccC-HHHHHHHHcCCccHHHHHHHHhcCHHHHHHHHhcCCChhhHHHHHHHHHhc
Confidence 34555566654444 4779999999999998754 57889999885 69999999999999543
No 367
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=57.97 E-value=7.1 Score=40.37 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=26.6
Q ss_pred CcccEEEEecccccCCCCChHHHHHHHHHHhccCCC--ceEEEE
Q psy15878 64 DEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKS--IQIFAM 105 (693)
Q Consensus 64 ~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~--~qii~l 105 (693)
-.+.++||||+|.+..+. ...-..++.-++++.+. +.+|+.
T Consensus 144 ~~vrmLIIDE~H~lLaGs-~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGS-YRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred cCCcEEEeechHHHhccc-HHHHHHHHHHHHHHhhccCCCeEEe
Confidence 467899999999877543 33344556666666554 445544
No 368
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=57.79 E-value=8.5 Score=29.33 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=17.3
Q ss_pred hhhhcCCCCCHHHHHHHHHc
Q psy15878 606 RALMDLPGVKIGRARQLLNA 625 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~ 625 (693)
-+|.++||||+++|.+|.++
T Consensus 38 ~~L~~i~Gig~~~a~~i~~~ 57 (60)
T PF14520_consen 38 EELAEIPGIGEKTAEKIIEA 57 (60)
T ss_dssp HHHHTSTTSSHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHH
Confidence 35889999999999999864
No 369
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=57.23 E-value=16 Score=37.75 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=46.8
Q ss_pred CCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhh--hhhHHHHHHHHHHHHhcCcccccc
Q psy15878 627 YSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITK--MDKVEAMKNLIQNLQKNYDNIVHN 691 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 691 (693)
|-|+++|+.+++++|.. + |++.+.|+.|++-|+.+..-+ ++.... .+++.+.|.+++||=.-
T Consensus 155 FPtpe~La~~~~~eL~~-~-Gl~~~Ra~~L~~lA~~i~~g~l~l~~~~~-~~~~~~~L~~LpGIGpw 218 (283)
T PRK10308 155 FPTPERLAAADPQALKA-L-GMPLKRAEALIHLANAALEGTLPLTIPGD-VEQAMKTLQTFPGIGRW 218 (283)
T ss_pred CCCHHHHHcCCHHHHHH-C-CCCHHHHHHHHHHHHHHHcCCCCccccCC-HHHHHHHHhcCCCcCHH
Confidence 88999999999999987 5 999999999999998765511 111112 25677888889998543
No 370
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=56.41 E-value=36 Score=39.59 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=51.4
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
...++||.|||+.-|..+++.+.. +. . ......+..+|||.+.+.+...
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~--~~------------------~-----------~~~~i~v~~~~gG~~~~~q~~~ 121 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTD--FS------------------K-----------HMRGVNVVALYGGQRYDVQLRA 121 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHH--HH------------------h-----------hcCCceEEEEECCcCHHHHHHH
Confidence 345899999999999988887765 11 0 0001347788899876655433
Q ss_pred HHHHhCCCCeEEEecc-----hhhcc-cCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTS-----TLAAG-VNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~-----~l~~G-vnlp~~~vVI~~ 290 (693)
++ +...|+|+|+ .+..+ +++..+.+||.+
T Consensus 122 ---l~-~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 122 ---LR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred ---hc-CCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 23 4578999995 33333 678888777654
No 371
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=56.35 E-value=26 Score=28.22 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHH
Q psy15878 396 ETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQ 433 (693)
Q Consensus 396 ~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~ 433 (693)
+...+...++.|.+.|+|... ++.+.+|+.|..+..
T Consensus 32 ~~~~~~~yL~~L~~~gLI~~~--~~~Y~lTekG~~~l~ 67 (77)
T PF14947_consen 32 NYSTLKKYLKELEEKGLIKKK--DGKYRLTEKGKEFLE 67 (77)
T ss_dssp -HHHHHHHHHHHHHTTSEEEE--TTEEEE-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCeeCC--CCEEEECccHHHHHH
Confidence 344577889999999999753 556999999987654
No 372
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=56.06 E-value=28 Score=34.04 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=41.6
Q ss_pred cchhhhhcCCCCCHHHHHHHHHc--C-CCC--H--H----H---HHhcChHHHHHHhc--CCCHHHHHHHHHHHHh-hhh
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNA--G-YSS--L--E----L---IARADAKEMVAKIR--HLPLRSARNLISAAKL-HFI 665 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~--g-~~s--~--~----~---l~~a~~~~l~~~~~--~~~~~~a~~i~~~a~~-~~~ 665 (693)
.+.-.|.++||||+++|+++.-. | +.. . . . ......++...++. |+.++.|++.++.+.. ...
T Consensus 106 ~D~~~L~~ipGIGkKtAerIilELkdK~~~~~~~~~~~~~~~~~~~~~~~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~ 185 (203)
T PRK14602 106 EDVAALTRVSGIGKKTAQHIFLELKYKLKVEGLPAAAVLAGTGAVPGSVFRDALAGLANLGYGEEEARPVLKEVLEEEPD 185 (203)
T ss_pred CCHHHHhcCCCcCHHHHHHHHHHHHHhhccccccccccccccccCCCchHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCC
Confidence 34467889999999999987622 1 110 0 0 0 00001133344443 6778888888887732 112
Q ss_pred hhhhhHHHHHHHHHHHH
Q psy15878 666 TKMDKVEAMKNLIQNLQ 682 (693)
Q Consensus 666 ~~~~~~~~~~~~~~~~~ 682 (693)
.+.+++-.+|...|
T Consensus 186 ---~~~e~lir~ALk~l 199 (203)
T PRK14602 186 ---LDVGGALRAALKAL 199 (203)
T ss_pred ---CCHHHHHHHHHHHh
Confidence 34555555555544
No 373
>PRK10702 endonuclease III; Provisional
Probab=55.97 E-value=20 Score=35.29 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=30.6
Q ss_pred CccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHh
Q psy15878 601 RAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKI 645 (693)
Q Consensus 601 ~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~ 645 (693)
++...-+|++|||||+++|....-.+|.-+.-..-.....+...+
T Consensus 104 ~p~~~~~Ll~lpGVG~ktA~~ill~a~~~~~~~VDt~v~Rv~~r~ 148 (211)
T PRK10702 104 VPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRT 148 (211)
T ss_pred CCchHHHHhcCCcccHHHHHHHHHHHcCCCcccccchHHHHHHHh
Confidence 577888999999999999998776666654333333334444433
No 374
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.88 E-value=15 Score=42.32 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=27.8
Q ss_pred CCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcC
Q psy15878 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSA 107 (693)
Q Consensus 61 ~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSA 107 (693)
......+++||||+|+++.. ....+++-|..-..++.+|+.|-
T Consensus 120 P~~gr~KViIIDEah~Ls~~----AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 120 PTAGRFKVYMIDEVHMLTNH----AFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred hhcCCceEEEEEChHhcCHH----HHHHHHHhhccCCCCceEEEEeC
Confidence 34467899999999999742 34455555543345566766654
No 375
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.83 E-value=7 Score=46.18 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=26.2
Q ss_pred ccCCCcEEEEcccchHHHHhchhcc---CCCCcccEEEEecccccCC
Q psy15878 36 QLNKKSIYICTIEKGSKLIGSLIQE---NRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 36 ~~~~~~IiV~Tpek~~~Ll~~l~~~---~~l~~i~lvVvDE~H~l~d 79 (693)
....+||||+.+--+ ++.-... ..+++ .+|||||||.+.|
T Consensus 192 ~~~~advIi~pYnyl---~dp~~r~~~~~~l~~-~ivI~DEAHNL~d 234 (705)
T TIGR00604 192 MLPFANIVLLPYQYL---LDPKIRSAVSIELKD-SIVIFDEAHNLDN 234 (705)
T ss_pred hhhcCCEEEechHHh---cCHHHHHHhhccccc-CEEEEECccchHH
Confidence 347899999998753 3322111 12333 8999999998864
No 376
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=54.80 E-value=17 Score=25.89 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=19.2
Q ss_pred HHhcCCCHHHHHHHhCCCchhHHHHH
Q psy15878 538 DVLNFDNHQKVAKMYGIQNSHLQNFL 563 (693)
Q Consensus 538 ~~i~e~~~~~i~~~y~v~~g~~~~l~ 563 (693)
-+-++.+..+||+.|||++..+++..
T Consensus 17 l~~~G~si~~IA~~~gvsr~TvyR~l 42 (45)
T PF02796_consen 17 LYAEGMSIAEIAKQFGVSRSTVYRYL 42 (45)
T ss_dssp HHHTT--HHHHHHHTTS-HHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCcCHHHHHHHH
Confidence 34567999999999999999998764
No 377
>PRK09401 reverse gyrase; Reviewed
Probab=54.75 E-value=25 Score=43.90 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=50.3
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.+++|.+||+.-+..+++.+...+.. . .+...+...|++++..++...
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~-------------------~-----------~~~~~~~~g~~~~~~~ek~~~ 171 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEK-------------------V-----------GCGVKILYYHSSLKKKEKEEF 171 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhh-------------------c-----------CceEEEEEccCCcchhHHHHH
Confidence 6789999999999999999888761110 0 011224556777888888888
Q ss_pred HHHHhCCCCeEEEecc
Q psy15878 258 EEAYLAGTLQIICCTS 273 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~ 273 (693)
.+.++.|..+|+|+|+
T Consensus 172 ~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 172 LERLKEGDFDILVTTS 187 (1176)
T ss_pred HHHHhcCCCCEEEECH
Confidence 9999999999999996
No 378
>KOG1434|consensus
Probab=54.00 E-value=6.7 Score=39.15 Aligned_cols=71 Identities=8% Similarity=0.140 Sum_probs=57.7
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNL 677 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~ 677 (693)
++.++..|++..-+.+|...|+.|+..+.-...+-+.. ++|+.+-...++.++|++....+|-+|.++.++
T Consensus 20 i~~l~~~gi~~td~~kLk~~gi~tikgv~ist~r~l~~-lkgise~kv~klkeaa~k~~~~~f~tA~e~le~ 90 (335)
T KOG1434|consen 20 IEELQVHGINVTDIEKLKSKGICTIKGVLISTRRALCK-LKGISEVKVDKLKEAANKSISHGFCTALELLEQ 90 (335)
T ss_pred HHHHHhcccchhhHHhhccCCeeeEeeeeehhHHHHHH-HhhHHHHhhhhHHHhhCCccCcCcchHHHHHhh
Confidence 45567778888888888888988888877666666666 789999999999999998877789999988765
No 379
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=53.68 E-value=40 Score=37.47 Aligned_cols=75 Identities=9% Similarity=0.208 Sum_probs=50.4
Q ss_pred CceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHH
Q psy15878 180 LMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEE 259 (693)
Q Consensus 180 ~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~ 259 (693)
.++||.+||+.-|..+.+.+.. +. ......+...+||.+...+...
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~--~~------------------------------~~~~~~~~~~~gg~~~~~~~~~-- 121 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRD--YS------------------------------KYLNIRSLVVFGGVSINPQMMK-- 121 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHH--Hh------------------------------ccCCCEEEEEECCcCHHHHHHH--
Confidence 3699999999999888877765 11 0112336778889887654322
Q ss_pred HHhCCCCeEEEecch------hhcccCCCCcEEEEec
Q psy15878 260 AYLAGTLQIICCTST------LAAGVNLPAQRVIIRD 290 (693)
Q Consensus 260 ~f~~g~i~VLvaT~~------l~~Gvnlp~~~vVI~~ 290 (693)
+ .+..+|+|||+- ....+++..+.+||.+
T Consensus 122 -l-~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViD 156 (456)
T PRK10590 122 -L-RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLD 156 (456)
T ss_pred -H-cCCCcEEEEChHHHHHHHHcCCcccccceEEEee
Confidence 2 356799999962 2345678888877665
No 380
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=53.39 E-value=6.2 Score=30.73 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=21.2
Q ss_pred HHhcChHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15878 633 IARADAKEMVAKIRHLPLRSARNLISAAKL 662 (693)
Q Consensus 633 l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~ 662 (693)
|-.|+.++|.. ++|+|++.|++|++.=++
T Consensus 8 iN~as~~eL~~-lpgi~~~~A~~Iv~~R~~ 36 (65)
T PF12836_consen 8 INTASAEELQA-LPGIGPKQAKAIVEYREK 36 (65)
T ss_dssp TTTS-HHHHHT-STT--HHHHHHHHHHHHH
T ss_pred CccCCHHHHHH-cCCCCHHHHHHHHHHHHh
Confidence 55788888887 789999999999987643
No 381
>PRK13910 DNA glycosylase MutY; Provisional
Probab=53.32 E-value=18 Score=37.42 Aligned_cols=49 Identities=20% Similarity=0.347 Sum_probs=34.5
Q ss_pred CccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCC
Q psy15878 601 RAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLP 649 (693)
Q Consensus 601 ~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~ 649 (693)
+|.+.-+|+.+||||+++|.....-+|.-+.-..-.....+...+-|+.
T Consensus 67 ~P~~~~~L~~LpGIG~kTA~aIl~~af~~~~~~VD~nV~RVl~Rl~g~~ 115 (289)
T PRK13910 67 LPNDYQSLLKLPGIGAYTANAILCFGFREKSACVDANIKRVLLRLFGLD 115 (289)
T ss_pred CChhHHHHHhCCCCCHHHHHHHHHHHCCCCcCcccHHHHHHHHHHhcCC
Confidence 5667789999999999999988877777655455555555555443443
No 382
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=53.16 E-value=49 Score=34.24 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=46.5
Q ss_pred CCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHH----HHHHHHHHhcCcccccc
Q psy15878 627 YSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAM----KNLIQNLQKNYDNIVHN 691 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 691 (693)
|-|++.|+.++++.+... |+....|+-|+.-|+....-.. +-..+ .+++.+.|.+++||=+-
T Consensus 144 fptpe~l~~~~~~~l~~~--g~s~~Ka~yi~~~A~~~~~g~~-~~~~l~~~~~e~a~e~L~~i~GIG~W 209 (285)
T COG0122 144 FPTPEQLAAADEEALRRC--GLSGRKAEYIISLARAAAEGEL-DLSELKPLSDEEAIEELTALKGIGPW 209 (285)
T ss_pred CCCHHHHHhcCHHHHHHh--CCcHHHHHHHHHHHHHHHcCCc-cHHHhccCCHHHHHHHHHcCCCcCHH
Confidence 899999999999999874 7888889999999987766210 11122 35677888889998543
No 383
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=52.73 E-value=27 Score=29.13 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=24.6
Q ss_pred hhhhcCCCCCHHHHHHHHHc----CCCCHHHHHhcC
Q psy15878 606 RALMDLPGVKIGRARQLLNA----GYSSLELIARAD 637 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~----g~~s~~~l~~a~ 637 (693)
++|..|+|||...|.++.++ .|+|++|+....
T Consensus 27 ~gl~~Ikglg~~~a~~I~~~R~~g~f~s~~df~~R~ 62 (90)
T PF14579_consen 27 LGLSAIKGLGEEVAEKIVEERENGPFKSLEDFIQRL 62 (90)
T ss_dssp -BGGGSTTS-HHHHHHHHHHHHCSS-SSHHHHHHHS
T ss_pred ehHhhcCCCCHHHHHHHHHhHhcCCCCCHHHHHHHH
Confidence 78899999999999988765 799999987644
No 384
>PRK07945 hypothetical protein; Provisional
Probab=52.56 E-value=24 Score=37.51 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=25.1
Q ss_pred hhhhhcCCCCCHHHHHHHHHcCCCCHHH-----HHhcChH-HHHHHhcCCCHHHHHHHHHHHH
Q psy15878 605 LRALMDLPGVKIGRARQLLNAGYSSLEL-----IARADAK-EMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~g~~s~~~-----l~~a~~~-~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
+..|+++.|-.|-|+|+-.+| =.+++. ++..... ++.+ ++|+|+.+|.+|.+-++
T Consensus 10 ~a~lle~~~~n~frv~ayr~a-a~~~~~~~~~~~~~~~~~g~l~~-~~giG~~~a~~i~e~~~ 70 (335)
T PRK07945 10 IAFLLERARADTYRVRAFRRA-ADVVEALDAAERARRARAGSLTS-LPGIGPKTAKVIAQALA 70 (335)
T ss_pred HHHHHHHcCCChhhHHHHHHH-HHHHHhcChhHHHHHHhcCCccc-CCCcCHHHHHHHHHHHh
Confidence 345555555555555555444 111111 1111111 2332 55666666666665554
No 385
>KOG1132|consensus
Probab=52.52 E-value=1.7e+02 Score=34.73 Aligned_cols=63 Identities=27% Similarity=0.551 Sum_probs=39.9
Q ss_pred CCCeEEEecchhhcccCCCC--cEE-EEec-Cc-----------------------------CCCccCCHH---HHHHHh
Q psy15878 264 GTLQIICCTSTLAAGVNLPA--QRV-IIRD-SY-----------------------------VGRDFISLN---MYKQMV 307 (693)
Q Consensus 264 g~i~VLvaT~~l~~Gvnlp~--~~v-VI~~-~~-----------------------------~g~~~~s~~---~~~Qr~ 307 (693)
|.+-..||=--.++|+|+.+ -+. |+-. +| .|.+|++.. ..-|-+
T Consensus 624 ga~~~aVcRGKVSEGlDFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAi 703 (945)
T KOG1132|consen 624 GAVFFAVCRGKVSEGLDFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAI 703 (945)
T ss_pred ceEEEEEecccccCCCCccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHH
Confidence 55567788888899999976 334 4431 11 123444444 347899
Q ss_pred hccCCCCCCCCCcEEEEeccc
Q psy15878 308 GRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 308 GRaGR~g~d~~G~~i~l~~~~ 328 (693)
||+-|... +.|-++ +++..
T Consensus 704 GRviRHR~-D~Gav~-l~D~R 722 (945)
T KOG1132|consen 704 GRVIRHRN-DYGAVI-LCDDR 722 (945)
T ss_pred HHHHhhhc-ccceee-Eeech
Confidence 99999884 367655 66544
No 386
>PF03333 PapB: Adhesin biosynthesis transcription regulatory protein; InterPro: IPR004356 P pili, or fimbriae, are ~68A in diameter and 1 micron in length, the bulk of which is a fibre composed of the main structural protein PapA []. At its tip, the pilus is terminated by a fibrillum consisting of repeating units of the PapE protein. This, in turn, is topped by the adhesins, PapF and PapG, both of which are needed for receptor binding. The tip fibrillum is anchored to the main PapA fibre by the PapK pilus-adaptor protein. PapH, an outer membrane protein, then anchors the entire rod in the bacterial envelope []. A cytoplasmic chaperone (PapD) assists in assembling the monomers of the macromolecule in the membrane. All of the functional pap genes are arranged in a cluster (operon) on the Escherichia coli genome. It is believed that selective pressure exerted by the host's urinal and intestinal tract isoreceptors forced the spread of this operon to other strains via lateral transfer []. PapB, encoded within the cluster, acts as a transcriptional regulator of the functional pap genes and is located in the bacterial cytoplasm []. Its mechanism involves differential binding to separate sites in the cluster, suggesting that this protein is both an activator and repressor of pilus-adhesion transcription. The protein shares similarity with other E. coli fimbrial- adhesion transcription regulators, such as AfaA, DaaA and FanB. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 3M8J_A.
Probab=52.28 E-value=38 Score=28.34 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=26.1
Q ss_pred HHH-HhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHh
Q psy15878 536 LYD-VLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFC 577 (693)
Q Consensus 536 l~~-~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~ 577 (693)
|+| ++.+.+-.+++++|||+.|.+-.-+..-..++..+..++
T Consensus 46 L~dyLV~G~srkeac~~~gV~~syfs~~L~rL~~v~~~V~~l~ 88 (91)
T PF03333_consen 46 LRDYLVDGLSRKEACERHGVNQSYFSRALNRLNRVSQIVEQLS 88 (91)
T ss_dssp HHHHHTT---HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 555 889999999999999999987765555555555554443
No 387
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=52.28 E-value=42 Score=38.55 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=51.2
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
..++||.+||+.-|..+++.+.. +. ......+..+||+.+...+...+
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~--l~------------------------------~~~~i~v~~l~Gg~~~~~q~~~l 131 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVK--FG------------------------------ADLGLRFALVYGGVDYDKQRELL 131 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHH--Hh------------------------------ccCCceEEEEECCCCHHHHHHHH
Confidence 35899999999999988887665 11 00113478899999877665443
Q ss_pred HHHhCCCCeEEEecc-----hhhc--ccCCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTS-----TLAA--GVNLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~-----~l~~--Gvnlp~~~vVI~~ 290 (693)
.+..+|||+|+ .+.. .+++..+.+||.+
T Consensus 132 ----~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 132 ----QQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred ----hCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 24578999996 2322 3667777766554
No 388
>TIGR00593 pola DNA polymerase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.27 E-value=22 Score=42.89 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.2
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhc
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIARA 636 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~a 636 (693)
.+||||+++|.+|.+. |.|++.|.+.
T Consensus 189 GVpGIG~KtA~kLL~~-ygsle~i~~~ 214 (887)
T TIGR00593 189 GVKGIGEKTAAKLLQE-FGSLENIYEN 214 (887)
T ss_pred CCCCcCHHHHHHHHHH-cCCHHHHHHH
Confidence 5999999999999999 8899999753
No 389
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=52.12 E-value=46 Score=32.00 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=48.6
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
+.++||.+|++.-+...+..+.. +. .. ....+...||+.+..++....
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~--~~------------------~~------------~~~~~~~~~~~~~~~~~~~~~ 116 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARK--LG------------------KH------------TNLKVVVIYGGTSIDKQIRKL 116 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHH--Hh------------------cc------------CCceEEEEECCCCHHHHHHHh
Confidence 45799999999988888777665 11 00 012367788988876654332
Q ss_pred HHHhCCCCeEEEecch-----hhcc-cCCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTST-----LAAG-VNLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~~-----l~~G-vnlp~~~vVI~~ 290 (693)
+ +...|+|+|+- +..+ .+++...++|.+
T Consensus 117 ~----~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvD 150 (203)
T cd00268 117 K----RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLD 150 (203)
T ss_pred c----CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEe
Confidence 2 56789999952 2222 556666666554
No 390
>PRK01229 N-glycosylase/DNA lyase; Provisional
Probab=51.98 E-value=40 Score=33.04 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=22.2
Q ss_pred Cccchhhhh-cCCCCCHHHHHHHH-HcCCC
Q psy15878 601 RAPNLRALM-DLPGVKIGRARQLL-NAGYS 628 (693)
Q Consensus 601 ~~~el~~l~-~i~gi~~~~a~~L~-~~g~~ 628 (693)
++...-.|+ .+||||+++|--.. +.|+.
T Consensus 113 ~~~~R~~Ll~~lpGIG~KTAd~vL~~~~~~ 142 (208)
T PRK01229 113 QFEAREFLVKNIKGIGYKEASHFLRNVGYE 142 (208)
T ss_pred chHHHHHHHHcCCCCcHHHHHHHHHHccCC
Confidence 355556788 99999999999888 56773
No 391
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=51.92 E-value=19 Score=42.11 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=24.8
Q ss_pred CcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEc
Q psy15878 64 DEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 64 ~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lS 106 (693)
...+++||||+|++... ....+++.|..-..+.+||+.|
T Consensus 118 gr~KVIIIDEah~LT~~----A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH----AFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHH----HHHHHHHHHHhcCCCeEEEEEE
Confidence 56899999999999742 2344555444334455666554
No 392
>PRK08084 DNA replication initiation factor; Provisional
Probab=51.56 E-value=46 Score=33.30 Aligned_cols=101 Identities=8% Similarity=0.100 Sum_probs=48.8
Q ss_pred HHHHHHHHhhhhCcEEEEeeccCCCCCcccc--c-----cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEeccccc
Q psy15878 5 KYQSLAKAAEEFKFYLEEYAGVKGQYPPTKR--Q-----LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHML 77 (693)
Q Consensus 5 ~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~--~-----~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l 77 (693)
.+..++.+....+.....++|..|..+..-. + ..+..+.+.+.+.......... ..+.++++||+||+|.+
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~--~~~~~~dlliiDdi~~~ 109 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVL--EGMEQLSLVCIDNIECI 109 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHH--HHhhhCCEEEEeChhhh
Confidence 3455555543334445567776654433211 1 1245577766665332222211 23355789999999988
Q ss_pred CCCC-ChHHHHHHHHHHhccCCCceEEEEcCc
Q psy15878 78 NEPQ-RGPILECVVSKVLYLKKSIQIFAMSAT 108 (693)
Q Consensus 78 ~d~~-rg~~le~il~~l~~~~~~~qii~lSAT 108 (693)
.... ....+-.++.++.. ....++|+.|-.
T Consensus 110 ~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~ 140 (235)
T PRK08084 110 AGDELWEMAIFDLYNRILE-SGRTRLLITGDR 140 (235)
T ss_pred cCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCC
Confidence 5322 11223333443321 223456654443
No 393
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A ....
Probab=51.51 E-value=75 Score=24.81 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=14.3
Q ss_pred hhhcCCCCCHHHHHHHHH
Q psy15878 607 ALMDLPGVKIGRARQLLN 624 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~ 624 (693)
.+.+|||||++.|.++.+
T Consensus 48 ~~~~l~gIG~~ia~kI~E 65 (68)
T PF14716_consen 48 DLKKLPGIGKSIAKKIDE 65 (68)
T ss_dssp HHCTSTTTTHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHH
Confidence 478899999988887653
No 394
>PRK00076 recR recombination protein RecR; Reviewed
Probab=51.40 E-value=28 Score=33.64 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=18.4
Q ss_pred hhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHH
Q psy15878 607 ALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVA 643 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~ 643 (693)
.|.++||||++.|++|.-. |...++++...
T Consensus 12 ~l~~LPGIG~KsA~Rla~~-------ll~~~~~~~~~ 41 (196)
T PRK00076 12 ALRKLPGIGPKSAQRLAFH-------LLQRDREDVLR 41 (196)
T ss_pred HHHHCCCCCHHHHHHHHHH-------HHcCCHHHHHH
Confidence 3447777777777777655 55555444443
No 395
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=50.91 E-value=41 Score=33.15 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=42.3
Q ss_pred ccchhhhh---cCCCCCH-HHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 602 APNLRALM---DLPGVKI-GRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 602 ~~el~~l~---~i~gi~~-~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
..||+.+. .+||... ..|+.|.+. |.|+..+..|+.+++.. ++|+|.-.|-+|...+
T Consensus 26 d~ELLailLrtG~~~~~~~~la~~lL~~-fg~L~~l~~a~~~el~~-v~GiG~aka~~l~a~~ 86 (224)
T COG2003 26 DAELLAILLRTGTKGESVLDLAKELLQE-FGSLAELLKASVEELSS-VKGIGLAKAIQIKAAI 86 (224)
T ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHH-cccHHHHHhCCHHHHhh-CCCccHHHHHHHHHHH
Confidence 45777776 4555443 348888887 88999999999999999 8899987765554333
No 396
>KOG1001|consensus
Probab=50.46 E-value=31 Score=40.13 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=50.8
Q ss_pred HHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCC--CcccEEEEecccccCCCCChHH
Q psy15878 8 SLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRI--DEIGLIVIDEFHMLNEPQRGPI 85 (693)
Q Consensus 8 ~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l--~~i~lvVvDE~H~l~d~~rg~~ 85 (693)
++.+......+.|..++| +..... .+.+++|+++||..+.. .++ -..-.+|+||+|.+.....- .
T Consensus 207 elek~~~~~~l~v~v~~g---r~kd~~-el~~~dVVltTy~il~~--------~~l~~i~w~Riildea~~ikn~~tq-~ 273 (674)
T KOG1001|consen 207 ELEKVTEEDKLSIYVYHG---RTKDKS-ELNSYDVVLTTYDILKN--------SPLVKIKWLRIVLDEAHTIKNKDTQ-I 273 (674)
T ss_pred HHhccCCccceEEEEecc---cccccc-hhcCCceEEeeHHHhhc--------ccccceeEEEEEeccccccCCcchH-h
Confidence 333334445677888887 222222 23788999999997431 222 34457999999999754322 1
Q ss_pred HHHHHHHHhccCCCceEEEEcCcCC--CHHHHHH
Q psy15878 86 LECVVSKVLYLKKSIQIFAMSATIG--NINALST 117 (693)
Q Consensus 86 le~il~~l~~~~~~~qii~lSATl~--n~~~la~ 117 (693)
. ..+..+ .....-++|+|+- +.+++..
T Consensus 274 ~-~a~~~L----~a~~RWcLtgtPiqn~~~~lys 302 (674)
T KOG1001|consen 274 F-KAVCQL----DAKYRWCLTGTPIQNNLDELYS 302 (674)
T ss_pred h-hhheee----ccceeeeecCChhhhhHHHHHH
Confidence 1 111111 1234457788864 2455443
No 397
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=49.72 E-value=30 Score=33.20 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=0.0
Q ss_pred hhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 605 LRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
+-.|..+||||++.|+++.=. |.+.+++++.. + |+.+.++.+.+
T Consensus 11 I~~l~kLPGvG~KsA~R~Afh-------LL~~~~~~~~~-l-------a~al~~a~~~i 54 (198)
T COG0353 11 IDALKKLPGVGPKSAQRLAFH-------LLQRDREDVER-L-------AKALLEAKENI 54 (198)
T ss_pred HHHHhhCCCCChhHHHHHHHH-------HHccCHHHHHH-H-------HHHHHHHHhcC
No 398
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=49.71 E-value=22 Score=42.52 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=27.6
Q ss_pred CCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEc
Q psy15878 62 RIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 62 ~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lS 106 (693)
...+.+++||||+|+|.. .....+++.|......+.+|+.+
T Consensus 117 ~~~~~KV~IIDEad~lt~----~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 117 AESRYKIFIIDEAHMVTP----QGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred hcCCceEEEEechhhcCH----HHHHHHHHHHhCCCCCeEEEEEe
Confidence 346789999999999974 23445565555445566666654
No 399
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=49.47 E-value=10 Score=45.92 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=27.9
Q ss_pred CCCcEEEEcccchHHHHhchh-ccCCCCcccEEEEecccccCC
Q psy15878 38 NKKSIYICTIEKGSKLIGSLI-QENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~-~~~~l~~i~lvVvDE~H~l~d 79 (693)
..+||+||..-- |+..+. ....+.+..++||||||++.|
T Consensus 415 ~~AdivItNHa~---L~~~~~~~~~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 415 EQAQILITNHAY---LITRLVDNPELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred hcCCEEEecHHH---HHHHhhcccccCCCCCEEEEECcchHHH
Confidence 679999998664 334432 223467778999999998864
No 400
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.39 E-value=34 Score=33.02 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=11.0
Q ss_pred hhhcCCCCCHHHHHHHHHc
Q psy15878 607 ALMDLPGVKIGRARQLLNA 625 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~ 625 (693)
.|.++||||++.|++|.=.
T Consensus 12 ~l~~LPGIG~KsA~RlA~~ 30 (195)
T TIGR00615 12 SLKKLPGIGPKSAQRLAFH 30 (195)
T ss_pred HHHHCCCCCHHHHHHHHHH
Confidence 3446666666666666533
No 401
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=49.35 E-value=9.9 Score=37.40 Aligned_cols=38 Identities=13% Similarity=0.393 Sum_probs=21.8
Q ss_pred cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccC
Q psy15878 37 LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLN 78 (693)
Q Consensus 37 ~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~ 78 (693)
+..++|++||+..+. +... ......+++||||||=.+.
T Consensus 168 l~~~~vi~~T~~~~~---~~~~-~~~~~~~d~vIvDEAsq~~ 205 (236)
T PF13086_consen 168 LKEADVIFTTLSSAA---SPFL-SNFKEKFDVVIVDEASQIT 205 (236)
T ss_dssp HHT-SEEEEETCGGG----CCG-TT-----SEEEETTGGGS-
T ss_pred cccccccccccccch---hhHh-hhhcccCCEEEEeCCCCcc
Confidence 367999999998741 1211 1111389999999998764
No 402
>PRK13844 recombination protein RecR; Provisional
Probab=49.28 E-value=34 Score=33.13 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=10.4
Q ss_pred hhcCCCCCHHHHHHHHHc
Q psy15878 608 LMDLPGVKIGRARQLLNA 625 (693)
Q Consensus 608 l~~i~gi~~~~a~~L~~~ 625 (693)
|.++||||++.|++|.-.
T Consensus 17 l~~LPGIG~KsA~Rla~~ 34 (200)
T PRK13844 17 LRKLPTIGKKSSQRLALY 34 (200)
T ss_pred HHHCCCCCHHHHHHHHHH
Confidence 445666666666666543
No 403
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=49.18 E-value=24 Score=27.68 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=24.8
Q ss_pred HHHhhccCccchhhhhcCCCCCHHHHHHHHHc
Q psy15878 594 PQTLMYCRAPNLRALMDLPGVKIGRARQLLNA 625 (693)
Q Consensus 594 ~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~ 625 (693)
..|-.+|--.+.-+|.++||||.++|.+++..
T Consensus 35 ~~R~~~g~~~s~~dL~~v~gi~~~~~~~i~~~ 66 (69)
T TIGR00426 35 SYREEYGPFKTVEDLKQVPGIGNSLVEKNLAV 66 (69)
T ss_pred HHHHHcCCcCCHHHHHcCCCCCHHHHHHHHhh
Confidence 33444554558888999999999999999865
No 404
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=49.02 E-value=12 Score=44.99 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=27.3
Q ss_pred CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccC
Q psy15878 38 NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLN 78 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~ 78 (693)
..+||+|+.=-- |+..+...+.+.+.+.+||||||++.
T Consensus 412 ~~AdivItNHal---l~~~~~~~~~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 412 KTARLLITNHAY---FLTRVQDDKDFARNKVLVFDEAQKLM 449 (820)
T ss_pred HhCCEEEEchHH---HHHHHhhccCCCCCCEEEEECcchhH
Confidence 678999998543 33333333457889999999999875
No 405
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]
Probab=48.97 E-value=13 Score=34.40 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=28.1
Q ss_pred CCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 627 YSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
....-.|-.|+.++| +.++|+|++.|+.|++.=.+.
T Consensus 85 ~~~~vNiNtAs~eeL-~~lpgIG~~kA~aIi~yRe~~ 120 (149)
T COG1555 85 EEKKVNINTASAEEL-QALPGIGPKKAQAIIDYREEN 120 (149)
T ss_pred ccccccccccCHHHH-HHCCCCCHHHHHHHHHHHHHc
Confidence 334445778899999 669999999999999876444
No 406
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=48.88 E-value=40 Score=37.54 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=51.5
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
..++||.+||+.-|..+++.+...... .....+..++||.+...+....
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~-------------------------------~~~~~v~~~~Gg~~~~~~~~~l 120 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARF-------------------------------IPNIKVLTLCGGVPMGPQIDSL 120 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhh-------------------------------CCCcEEEEEECCCChHHHHHHh
Confidence 347999999999988888776641000 0013488899999887654333
Q ss_pred HHHhCCCCeEEEecc-----hhh-cccCCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTS-----TLA-AGVNLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~-----~l~-~Gvnlp~~~vVI~~ 290 (693)
+ +...|+|+|+ .+. ..+++..+.+||.+
T Consensus 121 ~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 121 E----HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred c----CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 2 5678999995 333 34678887777664
No 407
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=48.66 E-value=70 Score=37.07 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=48.8
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
..+.+||.+|++.-+......+...+ ..+.+.+++.+.+++..+
T Consensus 64 ~~g~tlVisPl~sL~~dqv~~l~~~g------------------------------------i~~~~~~s~~~~~~~~~~ 107 (607)
T PRK11057 64 LDGLTLVVSPLISLMKDQVDQLLANG------------------------------------VAAACLNSTQTREQQLEV 107 (607)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHcC------------------------------------CcEEEEcCCCCHHHHHHH
Confidence 56789999999887777666665522 227788999999999999
Q ss_pred HHHHhCCCCeEEEecch
Q psy15878 258 EEAYLAGTLQIICCTST 274 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~ 274 (693)
.+..+.|.++++++|+-
T Consensus 108 ~~~~~~g~~~il~~tPe 124 (607)
T PRK11057 108 MAGCRTGQIKLLYIAPE 124 (607)
T ss_pred HHHHhCCCCcEEEEChH
Confidence 99999999999999853
No 408
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.58 E-value=37 Score=36.54 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=26.9
Q ss_pred CCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEc
Q psy15878 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 61 ~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lS 106 (693)
+...+..++||||+|.+.+ ...+.++..+...+...++|+.|
T Consensus 115 p~~~~~kviIIDEa~~l~~----~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 115 PSKSRFKVYLIDEVHMLSR----HSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cccCCceEEEEEChhhcCH----HHHHHHHHHHhcCCCCeEEEEEc
Confidence 3346778999999998863 23445555555444555666654
No 409
>PRK00076 recR recombination protein RecR; Reviewed
Probab=48.20 E-value=36 Score=32.91 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=29.8
Q ss_pred HHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC
Q psy15878 643 AKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNY 685 (693)
Q Consensus 643 ~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (693)
+.++|+|+|+|+++.-..=+.-. +.+..+++.+.++..++
T Consensus 14 ~~LPGIG~KsA~Rla~~ll~~~~---~~~~~la~~i~~~~~~i 53 (196)
T PRK00076 14 RKLPGIGPKSAQRLAFHLLQRDR---EDVLRLAQALEEAKEKI 53 (196)
T ss_pred HHCCCCCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHcC
Confidence 44899999999999776644444 78888888777766543
No 410
>PRK14906 DNA-directed RNA polymerase subunit beta'/alpha domain fusion protein; Provisional
Probab=47.82 E-value=28 Score=43.34 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 614 VKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 614 i~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
+....+-.|..+||.|+.||...+.++|.+ ++++|+|.-+.|.+....+
T Consensus 1321 LSvRs~NcLk~agI~tvgdLv~~se~eLlk-ikN~GkKSl~EIkekL~e~ 1369 (1460)
T PRK14906 1321 VSQRWANKFSEAGIETVGDLIGKTEEDLLR-IEGIGAKAIEELKDGLEAH 1369 (1460)
T ss_pred hhhhHHHHHHHcCCCcHHHHhhCCHHHHhh-ccCCCcchHHHHHHHHHHC
Confidence 344456677788999999999999999999 7899999999999988654
No 411
>PRK07220 DNA topoisomerase I; Validated
Probab=47.66 E-value=19 Score=42.73 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=42.3
Q ss_pred hhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHH
Q psy15878 608 LMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLIS 658 (693)
Q Consensus 608 l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~ 658 (693)
+..++|+|++++.+|..+|+.|+.+++.|+++++.+.+ +++.+.-++...
T Consensus 688 ~~~~~~~~~kt~~Kl~~~~i~t~~~l~~a~~~~~a~~~-~is~~~~~~~~~ 737 (740)
T PRK07220 688 IKDIKGIGKKTAEKLEEAGITTVEALAEADPVELSKTT-KISVKKIKSWQE 737 (740)
T ss_pred hhcccccchhhhhhhhhcCccchhhhccCCHHHhhhhc-CCchhhhhhhhh
Confidence 56799999999999999999999999999999999876 666655554433
No 412
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=47.45 E-value=12 Score=44.09 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=26.4
Q ss_pred CCCcEEEEcccchHHHHhchh--ccCCCC--cccEEEEecccccCC
Q psy15878 38 NKKSIYICTIEKGSKLIGSLI--QENRID--EIGLIVIDEFHMLNE 79 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~--~~~~l~--~i~lvVvDE~H~l~d 79 (693)
..+||||+.=.- |+..+. ....+. +.+++||||||++.|
T Consensus 218 ~~AdivVtNH~L---Lladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 218 DEADVVVANHDL---VLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred hhCCEEEECcHH---HHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 678999998543 233331 223454 478999999999874
No 413
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=47.42 E-value=46 Score=27.10 Aligned_cols=40 Identities=18% Similarity=0.059 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--Cc----cEEecHHHHHHHHcCC
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--AG----HLSLTSIAKAAVQAGL 436 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~~----~~~~T~lG~~~~~~~l 436 (693)
+.....-++.|++.|+|..... ++ .+.+|+.|+.....++
T Consensus 28 ~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~~~~~ 73 (80)
T PF13601_consen 28 DGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREAFERYV 73 (80)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHHHHHHH
Confidence 3445677999999999985321 11 3899999999876653
No 414
>TIGR01083 nth endonuclease III. This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=47.42 E-value=33 Score=33.16 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=23.5
Q ss_pred ccchhhhhcCCCCCHHHHHHHHHcCCCCHH
Q psy15878 602 APNLRALMDLPGVKIGRARQLLNAGYSSLE 631 (693)
Q Consensus 602 ~~el~~l~~i~gi~~~~a~~L~~~g~~s~~ 631 (693)
+...-.|+++||||+++|....-.|+.-+.
T Consensus 102 ~~~~~~L~~l~GIG~ktA~~ill~~~~~~~ 131 (191)
T TIGR01083 102 PEDREELVKLPGVGRKTANVVLNVAFGIPA 131 (191)
T ss_pred chHHHHHHhCCCCcHHHHHHHHHHHcCCCc
Confidence 445567889999999999988877776543
No 415
>COG0258 Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
Probab=47.29 E-value=27 Score=36.69 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=51.4
Q ss_pred CCCHHHHHHHh-CCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHH
Q psy15878 542 FDNHQKVAKMY-GIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRAR 620 (693)
Q Consensus 542 e~~~~~i~~~y-~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~ 620 (693)
..+...+.++| |+.+- | +..++-.+|.--+ .+ -.+||||+++|.
T Consensus 168 ~~~~~~~~e~~~g~~p~--q------------liD~~~L~Gd~sD--------------ni-------pGV~GIG~ktA~ 212 (310)
T COG0258 168 FLDLEEVEEKFKGLTPE--Q------------LIDLKALVGDSSD--------------NI-------PGVKGIGPKTAL 212 (310)
T ss_pred cCCHHHHHHHHcCCCHH--H------------HHHHHHHhCCccc--------------CC-------CCCCCcCHHHHH
Confidence 34577788889 88876 2 5555556662001 11 139999999999
Q ss_pred HHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhh
Q psy15878 621 QLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFI 665 (693)
Q Consensus 621 ~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~ 665 (693)
.|.+. |.|++.|.+. +..++.+..+++.+.+.+.+.
T Consensus 213 ~Ll~~-~gs~e~i~~~--------~~~~~~~~~~~l~~~~~~afl 248 (310)
T COG0258 213 KLLQE-YGSLEGLYEN--------LDIIKKKTREKLLEDKEKAFL 248 (310)
T ss_pred HHHHH-hCCHHHHHHh--------hhhhcchhhHHHHHHHHHHhc
Confidence 99998 4466666543 334566777777777655544
No 416
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.17 E-value=36 Score=38.14 Aligned_cols=64 Identities=9% Similarity=0.136 Sum_probs=36.5
Q ss_pred CCcEEEEccc------chHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEc
Q psy15878 39 KKSIYICTIE------KGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 39 ~~~IiV~Tpe------k~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lS 106 (693)
.+|++...+. .+..++......+...+.+++||||+|++.. .....++..+..-++...+|+.+
T Consensus 84 ~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~----~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 84 HPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN----SAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH----HHHHHHHHHHhCCCCCeEEEEEe
Confidence 3566655442 2222333333345557889999999999864 24455555554334445555543
No 417
>PRK10880 adenine DNA glycosylase; Provisional
Probab=47.14 E-value=37 Score=36.16 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=31.5
Q ss_pred CccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHh
Q psy15878 601 RAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKI 645 (693)
Q Consensus 601 ~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~ 645 (693)
++...-+|+++||||+++|.....-+|.-+.-+.-.....+...+
T Consensus 104 ~p~~~~~L~~LpGIG~~TA~aIl~~af~~~~~iVD~nV~RV~~Rl 148 (350)
T PRK10880 104 FPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARC 148 (350)
T ss_pred chhhHHHHhcCCCccHHHHHHHHHHHCCCCeecccHHHHHHHHHH
Confidence 466778899999999999999888777665444333444444443
No 418
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=46.30 E-value=60 Score=35.62 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=49.2
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
+.++||.+||+.-|..+++.+.. .. ......+...+||.+...+....
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~--l~------------------------------~~~~~~v~~~~gg~~~~~~~~~l 130 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEP--LA------------------------------QATGLKLGLAYGGDGYDKQLKVL 130 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHH--Hh------------------------------ccCCceEEEEECCCCHHHHHHHh
Confidence 45799999999999888776654 11 00112377788887765543322
Q ss_pred HHHhCCCCeEEEecch-----h-hcccCCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTST-----L-AAGVNLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~~-----l-~~Gvnlp~~~vVI~~ 290 (693)
.+..+|+|+|+- + ...+++..+.+||.+
T Consensus 131 ----~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 131 ----ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred ----cCCCCEEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 245789999972 2 234677777776654
No 419
>COG5241 RAD10 Nucleotide excision repair endonuclease NEF1, RAD10 subunit [DNA replication, recombination, and repair]
Probab=46.08 E-value=17 Score=34.20 Aligned_cols=54 Identities=19% Similarity=0.120 Sum_probs=47.4
Q ss_pred hhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15878 607 ALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKL 662 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~ 662 (693)
-|..|++|...-+..+.+- |.++...-.|+.+|+..+. |+|+..|.++++..++
T Consensus 168 fl~~i~~Vnksds~~~L~d-~g~L~rf~gaSrdE~e~l~-g~g~~ka~~~ieyln~ 221 (224)
T COG5241 168 FLILIFIVNKSDSEDTLND-IGKLCRFNGASRDEFELLL-GFGFEKAAKYIEYLNL 221 (224)
T ss_pred ceEEEEeeccccHHHHHHH-HHHHHHHhccchhHHHHHH-ccCHHHHHHHHHHhcc
Confidence 3557889999999999987 8899999999999999955 9999999999998764
No 420
>COG5484 Uncharacterized conserved protein [Function unknown]
Probab=46.07 E-value=15 Score=36.49 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHH
Q psy15878 534 CILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSY 568 (693)
Q Consensus 534 ~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~ 568 (693)
.+=.||+..+...+|+++|||++..+++-.+.=.|
T Consensus 11 ~Akk~yl~gmk~~dIAeklGvspntiksWKrr~gW 45 (279)
T COG5484 11 IAKKDYLKGMKLKDIAEKLGVSPNTIKSWKRRDGW 45 (279)
T ss_pred HHHHHHHhhccHHHHHHHhCCChHHHHHHHHhcCC
Confidence 34468999999999999999999999976665555
No 421
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]
Probab=45.44 E-value=50 Score=34.29 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=46.3
Q ss_pred hhhcCCCCCHHHHHHHHHc----CCCCHHHHHhcChHHHHHH--hcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q psy15878 607 ALMDLPGVKIGRARQLLNA----GYSSLELIARADAKEMVAK--IRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQ 679 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~----g~~s~~~l~~a~~~~l~~~--~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~ 679 (693)
.+..|||||+.+|..+-+- -+.-.+++.+.=|.++... ++|.|+|...++-+... . .+++.+.+.++
T Consensus 54 ~~t~l~gIGk~ia~~I~e~l~tG~~~~le~lk~~~P~gl~~Ll~v~GlGpkKi~~Ly~elg---i---~~~e~l~~a~~ 126 (326)
T COG1796 54 RLTELPGIGKGIAEKISEYLDTGEVKKLEALKKEVPEGLEPLLKVPGLGPKKIVSLYKELG---I---KDLEELQEALE 126 (326)
T ss_pred ccCCCCCccHHHHHHHHHHHHcCccHHHHHHHHhCCcchHHHhhCCCCCcHHHHHHHHHHC---c---ccHHHHHHHHH
Confidence 3568999999999887653 4566788888888776664 47899877766665553 2 45555555544
No 422
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.03 E-value=26 Score=33.85 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=29.9
Q ss_pred HHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC
Q psy15878 643 AKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNY 685 (693)
Q Consensus 643 ~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (693)
+.++|+|+|+|+++.-..=+.-. +++..+.+.+.++..++
T Consensus 14 ~~LPGIG~KsA~RlA~~ll~~~~---~~~~~la~ai~~~~~~i 53 (195)
T TIGR00615 14 KKLPGIGPKSAQRLAFHLLKRDP---SEVLRLAQALLEAKENL 53 (195)
T ss_pred HHCCCCCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHcC
Confidence 44899999999999776644444 77888888777665544
No 423
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.00 E-value=30 Score=39.65 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=27.8
Q ss_pred CCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEc
Q psy15878 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 61 ~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lS 106 (693)
+...+.+++||||+|++... ....++.-+...+....+|+.+
T Consensus 114 P~~~~~KVvIIDEah~Lt~~----A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 114 PAQSRYRIFIVDEAHMVTTA----GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred hhcCCceEEEEECCCcCCHH----HHHHHHHHHhcCCCCeEEEEEe
Confidence 44578899999999999642 4455555555444455666655
No 424
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=44.73 E-value=19 Score=43.29 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=48.8
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchH--HHHhchhc---cCCCCcccEEEEeccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGS--KLIGSLIQ---ENRIDEIGLIVIDEFH 75 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~--~Ll~~l~~---~~~l~~i~lvVvDE~H 75 (693)
||.-=.+|..++...+|+.|+++..++. +...+..=.+||..+|.--|. .|-+.+.. ....+.+.+.||||++
T Consensus 191 LA~RDaewm~p~y~flGLtVg~i~~~~~--~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 191 LAQRDKEWMNPVFEFHGLSVGVILNTMR--PEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred hhhhhHHHHHHHHHHhCCeeeeeCCCCC--HHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechh
Confidence 4455567889999999999998865433 222222247899999987653 12222211 1123778999999999
Q ss_pred cc
Q psy15878 76 ML 77 (693)
Q Consensus 76 ~l 77 (693)
.+
T Consensus 269 Sv 270 (1025)
T PRK12900 269 SV 270 (1025)
T ss_pred hh
Confidence 54
No 425
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.59 E-value=67 Score=35.93 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=50.6
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
..++||.+||+.-+...++.+.. +. ......+..++||.+...+.
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~--l~------------------------------~~~~~~v~~~~gg~~~~~~~--- 206 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAA--LT------------------------------KYTGLNVMTFVGGMDFDKQL--- 206 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHH--hh------------------------------ccCCCEEEEEEccCChHHHH---
Confidence 45799999999999888877665 11 01113477888887765433
Q ss_pred HHHhCCCCeEEEecchh------hcccCCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTSTL------AAGVNLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~~l------~~Gvnlp~~~vVI~~ 290 (693)
+.+..+..+|||+|+-- ...+.+....+||.+
T Consensus 207 ~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 207 KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred HHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 34556778999999731 224566666666554
No 426
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=44.20 E-value=18 Score=38.01 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=24.2
Q ss_pred CCCHHHHHhcChHHHHHHhcCCC-HHHHHHHHHHHHhhhh
Q psy15878 627 YSSLELIARADAKEMVAKIRHLP-LRSARNLISAAKLHFI 665 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~~~~-~~~a~~i~~~a~~~~~ 665 (693)
|-|+++||.|+.+++.+.-.|+| ..-|+++.+.|+....
T Consensus 63 fPti~~LA~A~~~evl~~W~gLGYysRArnL~~~A~~v~~ 102 (342)
T COG1194 63 FPTIKALAAAPEDEVLKAWEGLGYYSRARNLHKAAQEVVE 102 (342)
T ss_pred CCCHHHHhcCCHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666 5556666666654443
No 427
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=43.98 E-value=33 Score=32.83 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEE
Q psy15878 53 LIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAM 105 (693)
Q Consensus 53 Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~l 105 (693)
+++.+...+......+|||||+|.+.. ...+.++..+...++...+|+.
T Consensus 84 i~~~~~~~~~~~~~kviiide~~~l~~----~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 84 LVEFLSRTPQESGRRVVIIEDAERMNE----AAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred HHHHHccCcccCCeEEEEEechhhhCH----HHHHHHHHHhcCCCCCeEEEEE
Confidence 344443445567889999999998864 2345555555443334455544
No 428
>KOG0331|consensus
Probab=43.97 E-value=86 Score=35.14 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=54.8
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
+..+||-+|||+-|..+.....+.+.. ......+.+||.+...+..-.
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~--------------------------------~~~~~~cvyGG~~~~~Q~~~l 212 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKS--------------------------------LRLRSTCVYGGAPKGPQLRDL 212 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCC--------------------------------CCccEEEEeCCCCccHHHHHH
Confidence 556999999999998888877661111 112378899999877665433
Q ss_pred HHHhCCCCeEEEecc-----hhhcc-cCCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTS-----TLAAG-VNLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~-----~l~~G-vnlp~~~vVI~~ 290 (693)
+. -+.|+|||+ .++.| +|+..+++++.+
T Consensus 213 ---~~-gvdiviaTPGRl~d~le~g~~~l~~v~ylVLD 246 (519)
T KOG0331|consen 213 ---ER-GVDVVIATPGRLIDLLEEGSLNLSRVTYLVLD 246 (519)
T ss_pred ---hc-CCcEEEeCChHHHHHHHcCCccccceeEEEec
Confidence 33 478999997 66777 788899988875
No 429
>PRK06893 DNA replication initiation factor; Validated
Probab=43.91 E-value=39 Score=33.66 Aligned_cols=88 Identities=10% Similarity=0.143 Sum_probs=44.2
Q ss_pred EEEEeeccCCCCCcccc--c-----cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCC-ChHHHHHHH
Q psy15878 19 YLEEYAGVKGQYPPTKR--Q-----LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQ-RGPILECVV 90 (693)
Q Consensus 19 ~v~~~~G~~~~~~~~~~--~-----~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~-rg~~le~il 90 (693)
..-.++|..|..+..-. + ..+..+.+.+............ ..+.+.+++|+||+|.+.... ....+-.++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~--~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~ 117 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVL--ENLEQQDLVCLDDLQAVIGNEEWELAIFDLF 117 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHH--hhcccCCEEEEeChhhhcCChHHHHHHHHHH
Confidence 33456776654433211 1 1234566666543222222211 235678999999999875321 122333344
Q ss_pred HHHhccCCCceEEEEcCcCC
Q psy15878 91 SKVLYLKKSIQIFAMSATIG 110 (693)
Q Consensus 91 ~~l~~~~~~~qii~lSATl~ 110 (693)
.++. ..+.+++.+|++.+
T Consensus 118 n~~~--~~~~~illits~~~ 135 (229)
T PRK06893 118 NRIK--EQGKTLLLISADCS 135 (229)
T ss_pred HHHH--HcCCcEEEEeCCCC
Confidence 4433 23446677777753
No 430
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=43.46 E-value=16 Score=44.54 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=28.3
Q ss_pred CCCcEEEEcccchHHHHhchh-ccCCCCcccEEEEecccccCC
Q psy15878 38 NKKSIYICTIEKGSKLIGSLI-QENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~-~~~~l~~i~lvVvDE~H~l~d 79 (693)
..+||+|+.=.- |+..+. ....+.+.+++||||||++.+
T Consensus 430 ~~AdivItNHal---Ll~dl~~~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 430 KFADLVITNHAL---LLTDLTSEEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred hcCCEEEECHHH---HHHHHhhhcccCCCCCeEEEECCchHHH
Confidence 678999998553 333332 334578899999999998864
No 431
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=43.45 E-value=26 Score=35.81 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 612 PGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 612 ~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
|.+.|+.|-+|.+..+ =+-|+..|+.++|.. ++|+|.|.|+.|+..=
T Consensus 304 ~~lDPK~~wAl~~~d~-FPVdvn~A~~~~llR-VPGiG~ksa~rIv~~R 350 (404)
T COG4277 304 PDLDPKTAWALKHMDR-FPVDVNKAPYKELLR-VPGIGVKSARRIVMTR 350 (404)
T ss_pred CCCChhhHHHHhcccc-ccccccccCHHHhcc-cCCCChHHHHHHHHHh
Confidence 3455666555554422 234455556555555 5566666666655443
No 432
>PF02981 FokI_N: Restriction endonuclease FokI, recognition domain; InterPro: IPR004234 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. Thie entry represents the type IIS restriction endonuclease FokI (3.1.21.4 from EC), which is a member of an unusual class of bipartite restriction enzymes that recognise a specific DNA sequence and cleave DNA nonspecifically a short distance away from that sequence []. FokI contains amino- and carboxy-terminal domains corresponding to the DNA-recognition and cleavage functions (IPR004233 from INTERPRO), respectively. The recognition domain is made of three smaller subdomains (D1, D2 and D3) which are evolutionarily related to the helix-turn-helix-containing DNA-binding domain of the catabolite gene activator protein CAP []. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1FOK_A 2FOK_B.
Probab=43.37 E-value=52 Score=29.79 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=27.3
Q ss_pred HHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcC
Q psy15878 401 EIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAG 435 (693)
Q Consensus 401 ~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~ 435 (693)
+.-+++-...|+++.+.+.+.+++|++|+..++++
T Consensus 110 d~flrwAvslgfl~~~~~~Dtf~IT~lG~~~~~~~ 144 (145)
T PF02981_consen 110 DGFLRWAVSLGFLDYDRETDTFSITELGKKYVKSN 144 (145)
T ss_dssp HHHHHHHHHTTSEEEETTTTEEEE-HHHHHHHHS-
T ss_pred cceeeeeeeeCceeeccCCCEEEeehhHHHHhhcc
Confidence 34466667889999988888999999999988764
No 433
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=43.28 E-value=17 Score=32.38 Aligned_cols=31 Identities=3% Similarity=0.061 Sum_probs=27.1
Q ss_pred CCCHHHHHhcChHHHHHHhcCCCHHHHHHHHH
Q psy15878 627 YSSLELIARADAKEMVAKIRHLPLRSARNLIS 658 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~ 658 (693)
+...-||-+|+.+++.. ++|+|++.|++|++
T Consensus 49 ~~~kIdiN~A~~~el~~-lpGigP~~A~~IV~ 79 (132)
T PRK02515 49 FGEKIDLNNSSVRAFRQ-FPGMYPTLAGKIVK 79 (132)
T ss_pred cCCcccCCccCHHHHHH-CCCCCHHHHHHHHH
Confidence 44666899999999987 99999999999995
No 434
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=43.28 E-value=31 Score=34.12 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=26.9
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPL 650 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~ 650 (693)
-.|+++||||+.+|....--++.-+.=+.-+-...+...+ |+..
T Consensus 121 e~Ll~l~GIG~kTAd~iLlya~~rp~fvVDty~~Rv~~Rl-G~~~ 164 (218)
T PRK13913 121 EWLLDQKGIGKESADAILCYVCAKEVMVVDKYSYLFLKKL-GIEI 164 (218)
T ss_pred HHHHcCCCccHHHHHHHHHHHcCCCccccchhHHHHHHHc-CCCC
Confidence 4577888888888777665555555445555555555544 5433
No 435
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=42.91 E-value=92 Score=38.48 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=30.1
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhC--CCCeEEEecch
Q psy15878 241 GVAYHHADLTAGERRLIEEAYLA--GTLQIICCTST 274 (693)
Q Consensus 241 gv~~~h~~l~~~eR~~ve~~f~~--g~i~VLvaT~~ 274 (693)
.++++.++++..++..+++.+.. |.+++|++|+-
T Consensus 526 ~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPE 561 (1195)
T PLN03137 526 PAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPE 561 (1195)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChH
Confidence 36789999999999999998887 99999999984
No 436
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=42.60 E-value=21 Score=31.67 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=34.0
Q ss_pred CCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy15878 627 YSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAM 674 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~ 674 (693)
-..+-+|-.|+.++|.. ++|+|++.|++|++.-... -.|.+.+++
T Consensus 56 ~~~~iniNtA~~~eL~~-lpGIG~~~A~~Ii~~R~~~--g~f~s~eeL 100 (120)
T TIGR01259 56 KLAAVNINAASLEELQA-LPGIGPAKAKAIIEYREEN--GAFKSVDDL 100 (120)
T ss_pred CCCCEeCCcCCHHHHhc-CCCCCHHHHHHHHHHHHhc--CCcCCHHHH
Confidence 44466888999999987 8899999999999987642 234554444
No 437
>KOG2534|consensus
Probab=42.51 E-value=31 Score=35.54 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=31.8
Q ss_pred hhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHH------hcCCCHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAK------IRHLPLRSARNL 656 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~------~~~~~~~~a~~i 656 (693)
.++-.|||||++.|+..-+- -=....++.....++.... +-|+|.++|++=
T Consensus 56 ~ea~~lP~iG~kia~ki~EiletG~l~ele~v~~de~~~~lklFtnifGvG~ktA~~W 113 (353)
T KOG2534|consen 56 EEAEKLPGIGPKIAEKIQEILETGVLRELEAVRNDERSQSLKLFTNIFGVGLKTAEKW 113 (353)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHcCCchhHHHHhcchhHHHHHHHHHHhccCHHHHHHH
Confidence 45667999999999886554 1223444444443344433 348999988754
No 438
>PRK13844 recombination protein RecR; Provisional
Probab=42.20 E-value=30 Score=33.54 Aligned_cols=40 Identities=15% Similarity=0.079 Sum_probs=29.8
Q ss_pred HHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC
Q psy15878 643 AKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNY 685 (693)
Q Consensus 643 ~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (693)
+.++|+|+|+|+++.-..=+.-. +++.++++.+.++..++
T Consensus 18 ~~LPGIG~KsA~Rla~~lL~~~~---~~~~~la~~i~~~~~~i 57 (200)
T PRK13844 18 RKLPTIGKKSSQRLALYLLDKSP---ETAIAIANSLLDATANI 57 (200)
T ss_pred HHCCCCCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHhC
Confidence 44899999999999776644444 77888888877766543
No 439
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=42.19 E-value=24 Score=31.16 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=21.0
Q ss_pred cEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEc
Q psy15878 67 GLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 67 ~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lS 106 (693)
.+|||||+|.+. ....++.+. .+.. ..++++|+..
T Consensus 89 ~~lviDe~~~l~---~~~~l~~l~-~l~~-~~~~~vvl~G 123 (131)
T PF13401_consen 89 VLLVIDEADHLF---SDEFLEFLR-SLLN-ESNIKVVLVG 123 (131)
T ss_dssp EEEEEETTHHHH---THHHHHHHH-HHTC-SCBEEEEEEE
T ss_pred eEEEEeChHhcC---CHHHHHHHH-HHHh-CCCCeEEEEE
Confidence 799999999974 144455443 3322 4556655543
No 440
>KOG0333|consensus
Probab=41.81 E-value=32 Score=38.09 Aligned_cols=58 Identities=21% Similarity=0.226 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhhCcEEEEeeccCCCCCccccc----cCCCcEEEEcccchHHHHhchhccCCCCcccEEE
Q psy15878 5 KYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQ----LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIV 70 (693)
Q Consensus 5 ~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~----~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvV 70 (693)
-.+++.+...+.|+++..|+|+.+..+..... -+..+|+|||.-- - .--.+.++++||
T Consensus 529 ~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvA-----g---RGIDIpnVSlVi 590 (673)
T KOG0333|consen 529 GADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVA-----G---RGIDIPNVSLVI 590 (673)
T ss_pred hHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEeccc-----c---cCCCCCccceee
Confidence 35677888888999999999998754332211 1578999999643 1 112568888887
No 441
>KOG1133|consensus
Probab=41.76 E-value=6.3e+02 Score=29.51 Aligned_cols=28 Identities=14% Similarity=-0.028 Sum_probs=21.8
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCC
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFP 205 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~ 205 (693)
-.+.+++|+||-..-..+.+...+.|.+
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil 655 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGIL 655 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchH
Confidence 3478999999999888888877764433
No 442
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=40.99 E-value=57 Score=33.56 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=31.1
Q ss_pred CccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHh
Q psy15878 601 RAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKI 645 (693)
Q Consensus 601 ~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~ 645 (693)
++.+.-.|++|||||+.+|....--+|.-+.-+.-.....+..-+
T Consensus 100 ~p~~~~~L~~LpGIG~~TA~~Il~~a~~~~~~~vD~~v~RVl~Rl 144 (275)
T TIGR01084 100 FPQDFEDLAALPGVGRYTAGAILSFALNKPYPILDGNVKRVLSRL 144 (275)
T ss_pred CcHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcchHhHHHHHHHH
Confidence 456678899999999999988887777766544433334444433
No 443
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=40.70 E-value=61 Score=25.95 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCCCchhHHHHHH
Q psy15878 529 RFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLN 564 (693)
Q Consensus 529 ~~~~a~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~ 564 (693)
+...+++|.-...+.+..+||+..|++++.+.+.+.
T Consensus 19 ~~r~af~L~R~~eGlS~kEIAe~LGIS~~TVk~~l~ 54 (73)
T TIGR03879 19 LAEAAAALAREEAGKTASEIAEELGRTEQTVRNHLK 54 (73)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 334556777778999999999999999999987655
No 444
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=40.52 E-value=18 Score=42.30 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCCcEEEEcccchHHHHhchh-ccCC--CCcccEEEEecccccCCC
Q psy15878 38 NKKSIYICTIEKGSKLIGSLI-QENR--IDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~-~~~~--l~~i~lvVvDE~H~l~d~ 80 (693)
..++++|++...+. .... .... +.+-.++|+||+|++.+.
T Consensus 193 ~~ad~vv~nh~~~~---~~~~~~~~~~~~p~~~v~v~DEAH~l~d~ 235 (654)
T COG1199 193 ENADLVVTNHALLL---ADVALEESRILLPENDVVVFDEAHNLPDI 235 (654)
T ss_pred hhCCEEEEccHHHH---hHHHhhhhhccCCcccEEEEeccccchHH
Confidence 57899999998753 2222 2222 567889999999999763
No 445
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.17 E-value=41 Score=37.94 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=26.3
Q ss_pred CCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEc
Q psy15878 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 63 l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lS 106 (693)
-.+.+++||||+|++... ....++..+...++...+|+.+
T Consensus 117 ~~~~kV~iIDE~~~ls~~----a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGH----SFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred cCCcEEEEEEChHhcCHH----HHHHHHHHHhccCCCeEEEEEE
Confidence 357899999999998742 3455555554444556666644
No 446
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=40.15 E-value=1.3e+02 Score=27.30 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~ 434 (693)
...+...++.|.+.|+|.... .+.+.+|+.|+.++..
T Consensus 36 ~~svs~~l~~L~~~Gli~~~~-~~~i~LT~~G~~~a~~ 72 (142)
T PRK03902 36 PSSVTKMVQKLDKDEYLIYEK-YRGLVLTPKGKKIGKR 72 (142)
T ss_pred hhHHHHHHHHHHHCCCEEEec-CceEEECHHHHHHHHH
Confidence 345677899999999998532 3459999999887654
No 447
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=39.91 E-value=28 Score=39.03 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=25.6
Q ss_pred CCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCc
Q psy15878 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSAT 108 (693)
Q Consensus 61 ~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSAT 108 (693)
+.-.+.++.||||+||++-. .+..++.-+- .++..++..=||
T Consensus 115 P~~~ryKVyiIDEvHMLS~~----afNALLKTLE--EPP~hV~FIlAT 156 (515)
T COG2812 115 PSEGRYKVYIIDEVHMLSKQ----AFNALLKTLE--EPPSHVKFILAT 156 (515)
T ss_pred CccccceEEEEecHHhhhHH----HHHHHhcccc--cCccCeEEEEec
Confidence 34478899999999999753 3344444443 233344444455
No 448
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=39.38 E-value=59 Score=36.62 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=21.9
Q ss_pred ccCCCCcccEEEEecccccCCCCChHHHHHHHHHHh
Q psy15878 59 QENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVL 94 (693)
Q Consensus 59 ~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~ 94 (693)
..+...+..++||||+|++.. ..+..++.-+.
T Consensus 122 ~~P~~~~~KVvIIDEa~~Ls~----~a~naLLk~LE 153 (507)
T PRK06645 122 YKPLQGKHKIFIIDEVHMLSK----GAFNALLKTLE 153 (507)
T ss_pred hccccCCcEEEEEEChhhcCH----HHHHHHHHHHh
Confidence 345567889999999999863 33455555544
No 449
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=39.09 E-value=37 Score=41.00 Aligned_cols=52 Identities=27% Similarity=0.170 Sum_probs=42.7
Q ss_pred CCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCc
Q psy15878 265 TLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGE 320 (693)
Q Consensus 265 ~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~ 320 (693)
.++.|++-++|.+|.|-|++-++..... .-|...-.|.+||.-|...|..|+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~----~~s~~~~~q~~gr~lr~~vnq~G~ 552 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRS----SGSETSKLQEVGRGLRLPVDENGH 552 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEecc----CCchHHHHHHhccceeccccccCc
Confidence 6899999999999999999988876542 236677899999999988776664
No 450
>PRK08727 hypothetical protein; Validated
Probab=38.76 E-value=93 Score=31.01 Aligned_cols=86 Identities=8% Similarity=0.082 Sum_probs=41.8
Q ss_pred EEEeeccCCCCCcccc-------ccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCCh-HHHHHHHH
Q psy15878 20 LEEYAGVKGQYPPTKR-------QLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRG-PILECVVS 91 (693)
Q Consensus 20 v~~~~G~~~~~~~~~~-------~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg-~~le~il~ 91 (693)
...++|..|..+..-. ...+..+++.+.+.+..-+... ...+.+.++||+||+|.+...... ..+-.++.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~--~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n 120 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDA--LEALEGRSLVALDGLESIAGQREDEVALFDFHN 120 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHH--HHHHhcCCEEEEeCcccccCChHHHHHHHHHHH
Confidence 4566776664443210 0134566665554432211111 124577899999999988642221 12222333
Q ss_pred HHhccCCCceEEEEcCcC
Q psy15878 92 KVLYLKKSIQIFAMSATI 109 (693)
Q Consensus 92 ~l~~~~~~~qii~lSATl 109 (693)
+.. ....++|+.|-..
T Consensus 121 ~~~--~~~~~vI~ts~~~ 136 (233)
T PRK08727 121 RAR--AAGITLLYTARQM 136 (233)
T ss_pred HHH--HcCCeEEEECCCC
Confidence 332 2344566655543
No 451
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=38.71 E-value=52 Score=24.38 Aligned_cols=30 Identities=13% Similarity=0.323 Sum_probs=21.8
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVTSY 568 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~ 568 (693)
.=++.+..+||.+|||++..+.++..+-..
T Consensus 19 ~e~g~s~~~ia~~fgv~~sTv~~I~K~k~~ 48 (53)
T PF04218_consen 19 LEEGESKRDIAREFGVSRSTVSTILKNKDK 48 (53)
T ss_dssp HHCTT-HHHHHHHHT--CCHHHHHHHCHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHhHHH
Confidence 446678999999999999999988776554
No 452
>PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. It is often found with the transposase IS111A/IS1328/IS1533 family (see IPR002525 from INTERPRO) [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=38.68 E-value=26 Score=28.99 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.6
Q ss_pred hhhcCCCCCHHHHHHHHHc
Q psy15878 607 ALMDLPGVKIGRARQLLNA 625 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~ 625 (693)
-|++|||||+.+|-.|...
T Consensus 3 ~l~sipGig~~~a~~llae 21 (87)
T PF02371_consen 3 LLTSIPGIGPITAATLLAE 21 (87)
T ss_pred hhcCCCCccHHHHHHHHHH
Confidence 3679999999999999875
No 453
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=38.54 E-value=36 Score=39.20 Aligned_cols=41 Identities=15% Similarity=0.307 Sum_probs=30.7
Q ss_pred CcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCC
Q psy15878 64 DEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIG 110 (693)
Q Consensus 64 ~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~ 110 (693)
..++++|||||+.+.+ ..+..++--+. ..++++|.+|.|-.
T Consensus 351 qtfDLLIVDEAqFIk~----~al~~ilp~l~--~~n~k~I~ISS~Ns 391 (738)
T PHA03368 351 QDFNLLFVDEANFIRP----DAVQTIMGFLN--QTNCKIIFVSSTNT 391 (738)
T ss_pred CcccEEEEechhhCCH----HHHHHHHHHHh--ccCccEEEEecCCC
Confidence 5899999999999875 35555554443 34889999998853
No 454
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=38.47 E-value=90 Score=31.67 Aligned_cols=45 Identities=20% Similarity=0.133 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHH
Q psy15878 400 SEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYS 446 (693)
Q Consensus 400 ~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~ 446 (693)
+..-++.|.+.|+|..+ ++.+++|+.|+.++...-+.-....+++
T Consensus 43 i~pqiKkL~~~~LV~~~--~~~Y~LS~~G~iiv~km~~ll~tl~v~e 87 (260)
T COG4742 43 ILPQIKKLKDKGLVVQE--GDRYSLSSLGKIIVEKMEPLLDTLEVFE 87 (260)
T ss_pred HHHHHHHHhhCCCEEec--CCEEEecchHHHHHHHHHHHHHHHHHHH
Confidence 44568999999999976 4569999999999877544444444444
No 455
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=38.47 E-value=2.1e+02 Score=25.82 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHHc
Q psy15878 398 TLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQA 434 (693)
Q Consensus 398 ~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~~ 434 (693)
..+..+++.|++.|+|....+ + ..+.+|+.|+.+..-
T Consensus 61 ~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 102 (144)
T PRK03573 61 PSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISE 102 (144)
T ss_pred hhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHHH
Confidence 456788999999999996322 2 248999999988654
No 456
>PF01367 5_3_exonuc: 5'-3' exonuclease, C-terminal SAM fold; InterPro: IPR020045 This entry represents the C-terminal domain of 5' to 3' exonucleases. The 5'-3' exonucleases are conserved in organisms as diverse as bacteriophage and mammals. It adopts a SAM fold consisting of 4-5 helices packed into a bundle of two orthogonally packed alpha-hairpins. This domain is involved in interactions with DNA and proteins. 5' to 3' exonucleases that contain this domain include: Bacteriophage T4 RNase H, which has sequence similarity to the RAD2 family of eukaryotic proteins []. 5' to 3' exonuclease domain of DNA polymerase Taq, which is homologous to Escherichia coli DNA polymerase I (pol I) [, ]. Bacteriophage T5 5'-exonuclease, which are structure-specific endonucleases []. Flap endonuclease-1 (Fen-1 nuclease), a structure specific nuclease that is an essential enzyme for eukaryotic DNA replication and repair []. ; GO: 0003677 DNA binding, 0003824 catalytic activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B.
Probab=38.41 E-value=1.9 Score=36.90 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=20.8
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHh
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIAR 635 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~ 635 (693)
.+||||+++|..|.+. |.|++.|..
T Consensus 22 GV~GIG~KtA~~LL~~-ygsle~i~~ 46 (101)
T PF01367_consen 22 GVPGIGPKTAAKLLQE-YGSLENILA 46 (101)
T ss_dssp --TTSTCHCCCCCHHH-HTSCHCCCC
T ss_pred CCCCCCHHHHHHHHHH-cCCHHHHHH
Confidence 6999999999999999 779888876
No 457
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=38.22 E-value=55 Score=23.66 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=23.3
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVT 566 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~~~ 566 (693)
+.++.+..+|++.+|++++.+.+....+
T Consensus 15 ~~~g~s~~eia~~l~is~~tv~~~~~~~ 42 (58)
T smart00421 15 LAEGLTNKEIAERLGISEKTVKTHLSNI 42 (58)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4678999999999999999988665543
No 458
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=37.94 E-value=50 Score=25.34 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHhh
Q psy15878 613 GVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKLH 663 (693)
Q Consensus 613 gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~~ 663 (693)
|+ +.-+..+.++||...+.|...+.++|.+ + |+.. ....+|+++++.+
T Consensus 17 gl-~~y~~~f~~~~i~g~~~L~~l~~~~L~~-l-GI~~~~~r~kll~~i~~L 65 (66)
T PF07647_consen 17 GL-EQYADNFRENGIDGLEDLLQLTEEDLKE-L-GITNLGHRRKLLSAIQEL 65 (66)
T ss_dssp TC-GGGHHHHHHTTCSHHHHHTTSCHHHHHH-T-TTTHHHHHHHHHHHHHHH
T ss_pred Cc-HHHHHHHHHcCCcHHHHHhhCCHHHHHH-c-CCCCHHHHHHHHHHHHHc
Confidence 55 6677888889999999999999999985 5 7754 4457777777653
No 459
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=37.71 E-value=1.4e+02 Score=29.19 Aligned_cols=73 Identities=11% Similarity=0.060 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhCcEEEEeeccCCCCCcccc--c-----cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEeccccc
Q psy15878 5 KYQSLAKAAEEFKFYLEEYAGVKGQYPPTKR--Q-----LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHML 77 (693)
Q Consensus 5 ~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~--~-----~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l 77 (693)
.++.++++.....-....++|..|..+..-. . ..+..++..+-..+..-...+. ..+.+.++|||||+|.+
T Consensus 25 ~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~lLvIDdi~~l 102 (226)
T TIGR03420 25 LLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVL--EGLEQADLVCLDDVEAI 102 (226)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHH--hhcccCCEEEEeChhhh
Confidence 4455555533223344556776554433211 1 0234555554333221111111 23456689999999988
Q ss_pred CC
Q psy15878 78 NE 79 (693)
Q Consensus 78 ~d 79 (693)
..
T Consensus 103 ~~ 104 (226)
T TIGR03420 103 AG 104 (226)
T ss_pred cC
Confidence 64
No 460
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=37.69 E-value=1e+02 Score=26.31 Aligned_cols=60 Identities=8% Similarity=-0.103 Sum_probs=39.1
Q ss_pred hHHHHHHHcCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHhCCC
Q psy15878 496 QTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLN-FDNHQKVAKMYGIQ 555 (693)
Q Consensus 496 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i~-e~~~~~i~~~y~v~ 555 (693)
....+++.+|++..++.+.+.........+++.+.+...+...+.+ +.++.+|+...|.+
T Consensus 23 ~~~~lA~~~~~S~~~l~r~f~~~~g~s~~~~i~~~Rl~~a~~~L~~~~~~i~~iA~~~Gf~ 83 (107)
T PRK10219 23 NIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYV 83 (107)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHCCC
Confidence 3456788889999888766543111112255666666556666665 46899999888877
No 461
>PRK05755 DNA polymerase I; Provisional
Probab=37.38 E-value=42 Score=40.79 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.8
Q ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHHhc
Q psy15878 609 MDLPGVKIGRARQLLNAGYSSLELIARA 636 (693)
Q Consensus 609 ~~i~gi~~~~a~~L~~~g~~s~~~l~~a 636 (693)
-.|||||+++|..|.+. |.|++.|.+.
T Consensus 190 pGv~GiG~ktA~~Ll~~-~gsle~i~~~ 216 (880)
T PRK05755 190 PGVPGIGEKTAAKLLQE-YGSLEGLYEN 216 (880)
T ss_pred CCCCCccHHHHHHHHHH-cCCHHHHHHh
Confidence 36999999999999988 7799999854
No 462
>KOG4434|consensus
Probab=37.16 E-value=2.4e+02 Score=29.76 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=52.5
Q ss_pred hhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHH
Q psy15878 591 TDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLIS 658 (693)
Q Consensus 591 ~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~ 658 (693)
..|+...-.|.+.--.+|+++|.|..---+.|-+. -++|+.+|+...+++.-..++.++..-=+.+..
T Consensus 136 mKlspM~vQgLwqfkSPLLQLPHitednL~~~~KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~ 204 (520)
T KOG4434|consen 136 MKLSPMFVQGLWQFKSPLLQLPHITEDNLQHLRKKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMV 204 (520)
T ss_pred HhccHHHHHHHHHhcChhhcCCccchHHHHHHhhhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHH
Confidence 34555566777887889999999999988888877 699999999999999888876655443333333
No 463
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=37.14 E-value=49 Score=24.23 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=22.8
Q ss_pred HHHHhcCCCHHHHHHHhCCCchhHHHHHHHHH
Q psy15878 536 LYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTS 567 (693)
Q Consensus 536 l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~ 567 (693)
+.-.+.+.+..+|++.+|++.+.+++....|-
T Consensus 20 ~l~~~~g~s~~eIa~~l~~s~~~v~~~l~ra~ 51 (54)
T PF08281_consen 20 LLRYFQGMSYAEIAEILGISESTVKRRLRRAR 51 (54)
T ss_dssp HHHHTS---HHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33468899999999999999999998776654
No 464
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.84 E-value=62 Score=37.24 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=26.7
Q ss_pred cCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEc
Q psy15878 60 ENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 60 ~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lS 106 (693)
.+...+.+++||||+|++... ....++..+-.-+....+|+.+
T Consensus 114 ~p~~~~~KVvIIdev~~Lt~~----a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 114 LPSRSRYKIFIIDEVHMLSTN----AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred ccccCCceEEEEEChhhCCHH----HHHHHHHHHHcCCCCeEEEEEe
Confidence 345578899999999998742 3445555554333445555544
No 465
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=36.69 E-value=62 Score=28.06 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=38.3
Q ss_pred HHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcC
Q psy15878 633 IARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNY 685 (693)
Q Consensus 633 l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (693)
|..++++-...++.+++++.++.+.+.....--+...++++...++.+.++++
T Consensus 49 Lkga~~e~~~~il~nms~r~a~~l~~e~~~~g~v~~~di~~Aq~~iv~~~r~l 101 (110)
T PF01706_consen 49 LKGASEELREKILSNMSKRAAEMLREEMEALGPVRLSDIEEAQREIVEIVRRL 101 (110)
T ss_dssp HCTS-HHHHHHHHTTS-HHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 45566666777788899999999999887665556788998888888887765
No 466
>PTZ00217 flap endonuclease-1; Provisional
Probab=36.63 E-value=28 Score=37.76 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.0
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhc
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIARA 636 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~a 636 (693)
.|||||+++|..|.+. |.|++.|...
T Consensus 239 gi~GIG~ktA~~Li~~-~gsle~il~~ 264 (393)
T PTZ00217 239 TIKGIGPKTAYKLIKK-YKSIEEILEH 264 (393)
T ss_pred CCCCccHHHHHHHHHH-cCCHHHHHHH
Confidence 6899999999999998 7899998653
No 467
>PF04919 DUF655: Protein of unknown function (DUF655); InterPro: IPR007003 This family includes several uncharacterised archaeal proteins.; PDB: 2I5H_A.
Probab=36.48 E-value=68 Score=30.44 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=20.1
Q ss_pred hhhhhcCCCCCHHHHHHHHHc----CCCCHHHHHh
Q psy15878 605 LRALMDLPGVKIGRARQLLNA----GYSSLELIAR 635 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~----g~~s~~~l~~ 635 (693)
+-.|-=+||||.+......+. -|+|.+||.+
T Consensus 115 lH~LeLLPGIGKK~m~~ILeERkkkpFeSFeDi~~ 149 (181)
T PF04919_consen 115 LHSLELLPGIGKKTMWKILEERKKKPFESFEDIEE 149 (181)
T ss_dssp SBGGGGSTT--HHHHHHHHHHHHHS---SHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHccCCCCCHHHHHH
Confidence 345666899999998888765 7999999875
No 468
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=36.29 E-value=42 Score=38.89 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=25.2
Q ss_pred CCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEE
Q psy15878 62 RIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAM 105 (693)
Q Consensus 62 ~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~l 105 (693)
.-...+++||||+|++.. .....++.-+-.-+....+|+.
T Consensus 116 ~~g~~KV~IIDEah~Ls~----~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 116 ARGRFKVYLIDEVHMLSR----HSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred hcCCCEEEEEechHhCCH----HHHHHHHHHHHcCCCCeEEEEe
Confidence 346788999999999874 2345555555433344455554
No 469
>PRK00118 putative DNA-binding protein; Validated
Probab=36.29 E-value=1.9e+02 Score=24.96 Aligned_cols=36 Identities=8% Similarity=0.088 Sum_probs=29.5
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVY 574 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~ 574 (693)
...+.+..+||+.+|++++.+.+....+........
T Consensus 30 y~eg~S~~EIAe~lGIS~~TV~r~L~RArkkLr~~~ 65 (104)
T PRK00118 30 YLDDYSLGEIAEEFNVSRQAVYDNIKRTEKLLEDYE 65 (104)
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999988877666554443
No 470
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=36.29 E-value=37 Score=24.42 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=20.8
Q ss_pred HHHHHhcCCCHHHHHHHhCCCchhHHHHHHH
Q psy15878 535 ILYDVLNFDNHQKVAKMYGIQNSHLQNFLNV 565 (693)
Q Consensus 535 ~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~ 565 (693)
++..+..+.+..+||+.+||++..+++....
T Consensus 10 ii~l~~~G~s~~~ia~~lgvs~~Tv~~w~kr 40 (50)
T PF13384_consen 10 IIRLLREGWSIREIAKRLGVSRSTVYRWIKR 40 (50)
T ss_dssp HHHHHHHT--HHHHHHHHTS-HHHHHHHHT-
T ss_pred HHHHHHCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3344445999999999999999998876553
No 471
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.25 E-value=46 Score=37.02 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=18.9
Q ss_pred CcccEEEEecccccCCCCChHHHHHHHHHHh
Q psy15878 64 DEIGLIVIDEFHMLNEPQRGPILECVVSKVL 94 (693)
Q Consensus 64 ~~i~lvVvDE~H~l~d~~rg~~le~il~~l~ 94 (693)
....++||||+|++.. .....++.-+.
T Consensus 120 g~~KV~IIDEah~Ls~----~A~NALLKtLE 146 (484)
T PRK14956 120 GKYKVYIIDEVHMLTD----QSFNALLKTLE 146 (484)
T ss_pred CCCEEEEEechhhcCH----HHHHHHHHHhh
Confidence 5678999999999864 24455555553
No 472
>PRK10736 hypothetical protein; Provisional
Probab=36.15 E-value=79 Score=34.02 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=36.6
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLI 657 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~ 657 (693)
+-|..+||||+++.++|.+. |.+++ .++.+++.. + |++.+.++.+.
T Consensus 8 l~L~~~~giG~~~~~~L~~~-~~~~~---~~~~~~l~~-~-g~~~~~~~~~~ 53 (374)
T PRK10736 8 LRLMSVSSLYGDKMVRIAHR-LLAQS---QIDAVVLQA-T-GLTLRQAQQFL 53 (374)
T ss_pred HHHHhCCCCCHHHHHHHHHH-hcChh---hCCHHHHHH-c-CCCHHHHHHHh
Confidence 56789999999999999997 77888 456666655 4 88888777763
No 473
>PRK05642 DNA replication initiation factor; Validated
Probab=35.99 E-value=57 Score=32.58 Aligned_cols=87 Identities=9% Similarity=0.083 Sum_probs=44.2
Q ss_pred EEEEeeccCCCCCccc--cc-----cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCC-hHHHHHHH
Q psy15878 19 YLEEYAGVKGQYPPTK--RQ-----LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQR-GPILECVV 90 (693)
Q Consensus 19 ~v~~~~G~~~~~~~~~--~~-----~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~r-g~~le~il 90 (693)
....++|..|..+..- .+ ..+..+++.+.+.+..-...+ ...+.+++++|+|++|.+..... ...+-.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~--~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~ 123 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPEL--LDNLEQYELVCLDDLDVIAGKADWEEALFHLF 123 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHH--HHhhhhCCEEEEechhhhcCChHHHHHHHHHH
Confidence 3445677665443321 11 134677777776643211111 12356779999999998753221 22233344
Q ss_pred HHHhccCCCceEEEEcCcCC
Q psy15878 91 SKVLYLKKSIQIFAMSATIG 110 (693)
Q Consensus 91 ~~l~~~~~~~qii~lSATl~ 110 (693)
..+. ..+ +.+.++++.+
T Consensus 124 n~~~--~~g-~~ilits~~~ 140 (234)
T PRK05642 124 NRLR--DSG-RRLLLAASKS 140 (234)
T ss_pred HHHH--hcC-CEEEEeCCCC
Confidence 4332 223 3456666644
No 474
>PHA00439 exonuclease
Probab=35.94 E-value=1.1e+02 Score=31.57 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=39.3
Q ss_pred cCCCCCHHHHHHHHHc--CCCCHHHHHhcChH--HHHHHh----cCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q psy15878 610 DLPGVKIGRARQLLNA--GYSSLELIARADAK--EMVAKI----RHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQN 680 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~--g~~s~~~l~~a~~~--~l~~~~----~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~ 680 (693)
.+|||| ++|.+|.+. .|..++...+.-.. +....- ++.++..-+.++..+.+.-. .+++.+.+.-.+
T Consensus 192 GVpGIG-KTA~kLL~~~~~~~~~~~~~~sg~~~~~~~~~~~k~~~~~~~~~w~~~v~~~~k~g~---~e~~~~~q~~~a 266 (286)
T PHA00439 192 GIPGWG-DTAEAFLENPYIFEQVEKVLKSGKRKGQTVTKWKKRAPEPEETLWDCIVTLGAKAGM---TEEDAIKQAQMA 266 (286)
T ss_pred CCCCcC-HHHHHHHhCccccchhhHHhhcccccccchhhhhccCCCccccHHHHHHHHHHHcCC---CHHHHHHHHHHH
Confidence 789999 999999999 77777776654211 111111 11223556666666655544 555555544333
No 475
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=35.80 E-value=1.1e+02 Score=22.72 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHh
Q psy15878 616 IGRARQLLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKL 662 (693)
Q Consensus 616 ~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~ 662 (693)
+.-+..+.++|| |.+.|...+++++.. + |+.. ...++|..+++.
T Consensus 17 ~~y~~~f~~~~i-~g~~L~~l~~~dL~~-l-gi~~~g~r~~i~~~i~~ 61 (63)
T cd00166 17 GQYADNFRENGI-DGDLLLLLTEEDLKE-L-GITLPGHRKKILKAIQK 61 (63)
T ss_pred HHHHHHHHHcCC-CHHHHhHCCHHHHHH-c-CCCCHHHHHHHHHHHHH
Confidence 667788888899 999999999999885 5 7664 556777766654
No 476
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=35.55 E-value=80 Score=27.54 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=26.6
Q ss_pred cccEEEEecccccCCCC-------ChHHHHHHHHHHhccCC---CceEEEEcCcC
Q psy15878 65 EIGLIVIDEFHMLNEPQ-------RGPILECVVSKVLYLKK---SIQIFAMSATI 109 (693)
Q Consensus 65 ~i~lvVvDE~H~l~d~~-------rg~~le~il~~l~~~~~---~~qii~lSATl 109 (693)
.-.++++||+|.+.... ....+..++..+..... +..+|+.|-++
T Consensus 58 ~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 35899999999887432 12334455555543333 35666666664
No 477
>PTZ00110 helicase; Provisional
Probab=35.50 E-value=1e+02 Score=35.27 Aligned_cols=76 Identities=12% Similarity=0.151 Sum_probs=48.9
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
+..+||.+||+.-|..+.+.+.. +. ......+...++|.+...+...
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~--~~------------------------------~~~~i~~~~~~gg~~~~~q~~~- 249 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNK--FG------------------------------ASSKIRNTVAYGGVPKRGQIYA- 249 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHH--Hh------------------------------cccCccEEEEeCCCCHHHHHHH-
Confidence 45689999999988887777665 11 0011236777888876654332
Q ss_pred HHHhCCCCeEEEecc-----hhhcc-cCCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTS-----TLAAG-VNLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~-----~l~~G-vnlp~~~vVI~~ 290 (693)
++.| ..|||+|+ .+..+ +++..+++||.+
T Consensus 250 --l~~~-~~IlVaTPgrL~d~l~~~~~~l~~v~~lViD 284 (545)
T PTZ00110 250 --LRRG-VEILIACPGRLIDFLESNVTNLRRVTYLVLD 284 (545)
T ss_pred --HHcC-CCEEEECHHHHHHHHHcCCCChhhCcEEEee
Confidence 3333 68999996 44444 567777766654
No 478
>PRK03980 flap endonuclease-1; Provisional
Probab=35.49 E-value=34 Score=35.58 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=23.0
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHh
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIAR 635 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~ 635 (693)
.|||||+++|..|.+. |.|++.+..
T Consensus 193 GI~GIG~ktA~kLi~~-~~sle~i~~ 217 (292)
T PRK03980 193 GIKGIGPKTALKLIKK-HGDLEKVLE 217 (292)
T ss_pred CCCCccHHHHHHHHHH-CCCHHHHHH
Confidence 7889999999999998 889999977
No 479
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.27 E-value=50 Score=38.16 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=25.3
Q ss_pred CCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEc
Q psy15878 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 61 ~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lS 106 (693)
+....++++||||+|++... ....++..+..-+....+|+.+
T Consensus 120 p~~g~~KV~IIDEvh~Ls~~----a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 120 PVQGRFKVFMIDEVHMLTNT----AFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cccCCceEEEEEChhhCCHH----HHHHHHHhcccCCCCeEEEEEE
Confidence 34467899999999998742 3444444443323344555544
No 480
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=35.16 E-value=84 Score=26.03 Aligned_cols=38 Identities=16% Similarity=0.019 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHhhcCCeEeeccC-----ccEEecHHHHHHHH
Q psy15878 396 ETTLSEIVASLLASKGTMLTMNEA-----GHLSLTSIAKAAVQ 433 (693)
Q Consensus 396 ~~~~~~~~l~~L~~~g~i~~~~~~-----~~~~~T~lG~~~~~ 433 (693)
+.......++.|++.|+|...... ..|.+|+.|+.+..
T Consensus 32 s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 32 SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHH
Confidence 344567789999999999864222 14999999988753
No 481
>KOG1001|consensus
Probab=35.01 E-value=10 Score=44.13 Aligned_cols=81 Identities=12% Similarity=0.115 Sum_probs=63.1
Q ss_pred eEEEcCCCCHHHHHHHHHHHhCCC-Ce-EEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCC
Q psy15878 242 VAYHHADLTAGERRLIEEAYLAGT-LQ-IICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESG 319 (693)
Q Consensus 242 v~~~h~~l~~~eR~~ve~~f~~g~-i~-VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G 319 (693)
...+-|.|+...|..++..|.++. .+ .+++......|+|+-+..+|+..+ .+.++..-.|-+-||-|-|+..+-
T Consensus 566 ~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d----~~wnp~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 566 FLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMD----PWWNPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred cchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhc----hhcChHHHHHHHHHHHHhccccee
Confidence 445668999999999999999643 23 456778889999999888877765 278999999999999999977666
Q ss_pred cEEEEec
Q psy15878 320 ESIMLCK 326 (693)
Q Consensus 320 ~~i~l~~ 326 (693)
.+..+.-
T Consensus 642 ~v~r~~i 648 (674)
T KOG1001|consen 642 KVSRFII 648 (674)
T ss_pred eeeeehh
Confidence 6655543
No 482
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=34.68 E-value=47 Score=29.46 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=31.3
Q ss_pred HHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHH
Q psy15878 402 IVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYS 446 (693)
Q Consensus 402 ~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~ 446 (693)
.+++.++-.|+++..+ |.+.+|++|+..+..++ ..-+.++.
T Consensus 16 p~~eAaelLgf~~~~~--Gdi~LT~~G~~f~~a~~--~~rK~if~ 56 (120)
T PF09821_consen 16 PIVEAAELLGFAEVEE--GDIRLTPLGRRFAEADI--DERKEIFR 56 (120)
T ss_pred HHHHHHHHcCCeeecC--CcEEeccchHHHHHCCh--HHHHHHHH
Confidence 4577778889999864 45999999999999976 44454443
No 483
>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....
Probab=34.54 E-value=1.6e+02 Score=23.21 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHhhcCCeEeeccC-------ccEEecHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNEA-------GHLSLTSIAKAAV 432 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~~-------~~~~~T~lG~~~~ 432 (693)
...+-.+++.|++.|+|+..... ..+.+|+.|+...
T Consensus 31 ~g~lY~~L~~Le~~gli~~~~~~~~~~~~rk~Y~iT~~G~~~l 73 (75)
T PF03551_consen 31 PGSLYPALKRLEEEGLIESRWEEEGNGRPRKYYRITEKGREEL 73 (75)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEETTSSEEEEEEESHHHHHHH
T ss_pred hhHHHHHHHHHHhCCCEEEeeeccCCCCCCEEEEECHHHHHHh
Confidence 34566789999999999853221 1399999998765
No 484
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=34.24 E-value=69 Score=31.66 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=49.0
Q ss_pred EEEeeccCCCCCccc---------cccCCCcEEEEcccchHHHHhchhcc-------CCCCcccEEEEecccccCCCCC-
Q psy15878 20 LEEYAGVKGQYPPTK---------RQLNKKSIYICTIEKGSKLIGSLIQE-------NRIDEIGLIVIDEFHMLNEPQR- 82 (693)
Q Consensus 20 v~~~~G~~~~~~~~~---------~~~~~~~IiV~Tpek~~~Ll~~l~~~-------~~l~~i~lvVvDE~H~l~d~~r- 82 (693)
...++|+.|..+... +...+..|+..|.+.+..-+...... ..+.+.+++++|.+|.+.+...
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~ 115 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRT 115 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHH
Confidence 345677766444321 11146778888887765332222221 2357899999999999874211
Q ss_pred hHHHHHHHHHHhccCCCceEEEEcCcCCC
Q psy15878 83 GPILECVVSKVLYLKKSIQIFAMSATIGN 111 (693)
Q Consensus 83 g~~le~il~~l~~~~~~~qii~lSATl~n 111 (693)
...+-.++..+. ..+.++|+.|...|+
T Consensus 116 q~~lf~l~n~~~--~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 116 QEELFHLFNRLI--ESGKQLILTSDRPPS 142 (219)
T ss_dssp HHHHHHHHHHHH--HTTSEEEEEESS-TT
T ss_pred HHHHHHHHHHHH--hhCCeEEEEeCCCCc
Confidence 122223333332 345678887767653
No 485
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.10 E-value=56 Score=37.13 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=28.1
Q ss_pred cCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEc
Q psy15878 60 ENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 60 ~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lS 106 (693)
.+...+.+++||||+|++... ....++..+...+....+|+.|
T Consensus 114 ~p~~~~~kVvIIDEad~ls~~----a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 114 APTRGRFKVYIIDEVHMLSKS----AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CcccCCceEEEEcCcccCCHH----HHHHHHHHHhCCCCCEEEEEEe
Confidence 344567899999999998642 3445566555444556666654
No 486
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=34.10 E-value=56 Score=33.20 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=22.2
Q ss_pred cEEEEecccccCCCC---Ch-HHHHHHHHHHhccCCCceEEEEc
Q psy15878 67 GLIVIDEFHMLNEPQ---RG-PILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 67 ~lvVvDE~H~l~d~~---rg-~~le~il~~l~~~~~~~qii~lS 106 (693)
++|++||+|.+.... ++ ..+..++..+.....++.+++.+
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 699999999886321 22 23444555544333344444433
No 487
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=33.82 E-value=73 Score=23.07 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=22.1
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLN 564 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~ 564 (693)
+.++.+..+|++.++++++.+++...
T Consensus 12 ~~~~~s~~eia~~l~~s~~tv~~~~~ 37 (57)
T cd06170 12 LAEGKTNKEIADILGISEKTVKTHLR 37 (57)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 45889999999999999998886555
No 488
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=33.64 E-value=66 Score=36.44 Aligned_cols=42 Identities=14% Similarity=0.322 Sum_probs=27.8
Q ss_pred CCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEc
Q psy15878 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 61 ~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lS 106 (693)
+......++||||+|++.. ...+.++.-+...++...+|+.+
T Consensus 113 P~~~~~KVvIIDEad~Lt~----~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 113 PSMARFKIFIIDEVHMLTK----EAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cccCCeEEEEEECcccCCH----HHHHHHHHHHhhcCCceEEEEEE
Confidence 4557889999999999864 23445555554434556666655
No 489
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=33.58 E-value=2.4e+02 Score=22.88 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhhcCCeEeeccCccEEecHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKA 430 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~ 430 (693)
...+...++.|.+.|++..+..++.+.+++-...
T Consensus 34 ~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~~~ 67 (91)
T smart00346 34 KSTAHRLLNTLQELGYVEQDGQNGRYRLGPKVLE 67 (91)
T ss_pred HHHHHHHHHHHHHCCCeeecCCCCceeecHHHHH
Confidence 4456778999999999997644556777664433
No 490
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=33.42 E-value=99 Score=28.67 Aligned_cols=40 Identities=13% Similarity=-0.013 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHH
Q psy15878 531 FHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFAS 571 (693)
Q Consensus 531 ~~a~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~ 571 (693)
+.+++|. .+++.+..+||+.+||++|.+.+....|..-..
T Consensus 118 r~v~~l~-~~~g~s~~eIA~~lgis~~tV~~~l~Rar~~Lr 157 (164)
T PRK12547 118 REAIILI-GASGFSYEDAAAICGCAVGTIKSRVSRARNRLQ 157 (164)
T ss_pred HHHHHHH-HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3345555 459999999999999999999988777765433
No 491
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=33.13 E-value=62 Score=24.86 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhcCCeEeeccCccEEecHHHH
Q psy15878 399 LSEIVASLLASKGTMLTMNEAGHLSLTSIAK 429 (693)
Q Consensus 399 ~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~ 429 (693)
.+...++.|.+.|+++.++ +.+.+|+.|+
T Consensus 37 ~~~~~l~~l~~~Gll~~~~--~~l~lT~~G~ 65 (66)
T PF06969_consen 37 EFQKELEELQEDGLLEIDG--GRLRLTEKGR 65 (66)
T ss_dssp H-HHHHHHHHHTTSEEE-S--SEEEE-TTTG
T ss_pred HHHHHHHHHHHCCCEEEeC--CEEEECcccC
Confidence 3466788999999999764 5699999885
No 492
>PRK15215 fimbriae biosynthesis regulatory protein; Provisional
Probab=32.90 E-value=1.5e+02 Score=25.25 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=23.8
Q ss_pred HHHHH-HhcCCCHHHHHHHhCCCchhHHHH
Q psy15878 534 CILYD-VLNFDNHQKVAKMYGIQNSHLQNF 562 (693)
Q Consensus 534 ~~l~~-~i~e~~~~~i~~~y~v~~g~~~~l 562 (693)
.+|+| ++.+.+-.+++++|+|+.|.+-.-
T Consensus 52 ~AL~dyLV~G~trkevCe~~~Vn~gYfS~~ 81 (100)
T PRK15215 52 QALRDYLVFGVSRKDVCERYEVNNGYFSTS 81 (100)
T ss_pred HHHHHHHHcCccHHHHHHccCCCHHHHHHH
Confidence 34666 789999999999999999987643
No 493
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=32.87 E-value=54 Score=38.23 Aligned_cols=30 Identities=3% Similarity=-0.034 Sum_probs=22.7
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHHHH
Q psy15878 546 QKVAKMYGIQNSHLQNFLNVTSYFASKVYR 575 (693)
Q Consensus 546 ~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~ 575 (693)
..|.+.+.-..|..|.|.++++|.++---.
T Consensus 581 ~~~~~~~~~k~g~a~~la~~~~~~~~~~~~ 610 (709)
T PRK08691 581 AAIVRHFARKLGAAQMPAQHSAWTEYHPDT 610 (709)
T ss_pred HHHHHHhhhhhhHHHHHHhhhhheeecCCc
Confidence 345566666779999999999998875543
No 494
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=32.70 E-value=35 Score=25.87 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=28.0
Q ss_pred CCCHHHHHHHhCCCchhHHHHHHHH--HHHHHHHHHHhhhCcc
Q psy15878 542 FDNHQKVAKMYGIQNSHLQNFLNVT--SYFASKVYRFCEELPE 582 (693)
Q Consensus 542 e~~~~~i~~~y~v~~g~~~~l~~~~--~~~a~~~~~~~~~~~~ 582 (693)
+.+..+++++-||++..+.++...- ..-...+.++|+.++.
T Consensus 10 ~it~~~La~~~gis~~tl~~~~~~~~~~~~~~~l~~ia~~l~~ 52 (63)
T PF13443_consen 10 GITQKDLARKTGISRSTLSRILNGKPSNPSLDTLEKIAKALNC 52 (63)
T ss_dssp T--HHHHHHHHT--HHHHHHHHTTT-----HHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhcccccccHHHHHHHHHHcCC
Confidence 3567889999999999999888765 6777888899988884
No 495
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=32.59 E-value=1.9e+02 Score=23.68 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhhcCCeEeeccC-----ccEEecHHHHHHHHc
Q psy15878 398 TLSEIVASLLASKGTMLTMNEA-----GHLSLTSIAKAAVQA 434 (693)
Q Consensus 398 ~~~~~~l~~L~~~g~i~~~~~~-----~~~~~T~lG~~~~~~ 434 (693)
..+...++.|.+.|+|....+. ..+.+|+.|......
T Consensus 39 ~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~~~ 80 (101)
T smart00347 39 STVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIEE 80 (101)
T ss_pred hhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHHHH
Confidence 3466889999999999854221 248999999887655
No 496
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=32.31 E-value=64 Score=34.54 Aligned_cols=27 Identities=37% Similarity=0.667 Sum_probs=17.0
Q ss_pred HHHhchhccCCCC-cccEEEEecccccC
Q psy15878 52 KLIGSLIQENRID-EIGLIVIDEFHMLN 78 (693)
Q Consensus 52 ~Ll~~l~~~~~l~-~i~lvVvDE~H~l~ 78 (693)
..+++|...+... --+++++||+||+.
T Consensus 264 k~V~~wieegkAelvpGVLFIDEvHmLD 291 (398)
T PF06068_consen 264 KKVNKWIEEGKAELVPGVLFIDEVHMLD 291 (398)
T ss_dssp HHHHHHHHCTSEEEEE-EEEEESGGGSB
T ss_pred HHHHHHHhcCceEEecceEEecchhhcc
Confidence 3455565544432 23799999999985
No 497
>PRK09416 lstR lineage-specific thermal regulator protein; Provisional
Probab=32.28 E-value=3.5e+02 Score=24.55 Aligned_cols=87 Identities=9% Similarity=0.040 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhhhhhhhHHHHHHHHHhhcCCeEeeccC---ccEEecHHH
Q psy15878 352 PTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEA---GHLSLTSIA 428 (693)
Q Consensus 352 ~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~~---~~~~~T~lG 428 (693)
..+.-++|.++..+ ..--++...+...-.... ......+-.++..|++.|+|.....+ ..+.+|+.|
T Consensus 42 ~~~~l~IL~lL~~~--~yGYeI~k~I~e~~~g~~--------~~s~GtIYp~L~RLE~~GlI~s~~~~~~RK~Y~ITe~G 111 (135)
T PRK09416 42 EDILLAILQLLMNE--KTGYELLQLLRQRGILTF--------EGNEGSLYTLLHRLEQNRFIQSSWDHEGAKYYQLTDKG 111 (135)
T ss_pred ccHHHHHHHHHhCC--CCHHHHHHHHHHhcCCcc--------cCCCccHHHHHHHHHHCCCeEEeecCCCceEEEECHHH
Confidence 46677777777766 466667666554321110 01223456789999999999853211 249999999
Q ss_pred HHHHHcCC-ChhHHHHHHHhh
Q psy15878 429 KAAVQAGL-SHDVCLIIYSDL 448 (693)
Q Consensus 429 ~~~~~~~l-~~~~~~~~~~~l 448 (693)
+....--. .|..+..+++.+
T Consensus 112 re~L~e~~~~~~~~~~~~~~l 132 (135)
T PRK09416 112 NKMLRKAEKNATKARFILKGL 132 (135)
T ss_pred HHHHHHHHhCHHHhHHHHHHH
Confidence 88765543 566666666544
No 498
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=31.97 E-value=77 Score=26.77 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhhcCCeEeeccCc--cEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNEAG--HLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~~~--~~~~T~lG~~~~~ 433 (693)
-......++.|.+.|++...+++. .+.+|+.|+...+
T Consensus 45 y~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle 83 (95)
T COG3432 45 YKRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFLE 83 (95)
T ss_pred HHHHHHHHHHHHhCCCEEeccCCccceEEEChhHHHHHH
Confidence 345677899999999777544332 5999999987643
No 499
>PRK15340 transcriptional regulator InvF; Provisional
Probab=31.93 E-value=1.3e+02 Score=29.66 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=38.1
Q ss_pred HHHHHHHcCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHhCCC
Q psy15878 497 TLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVL-NFDNHQKVAKMYGIQ 555 (693)
Q Consensus 497 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i-~e~~~~~i~~~y~v~ 555 (693)
-..+++.+|++..++.+.+.........+++++.+.+-.+..++ .+.++.+|+..+|..
T Consensus 128 leeLA~~~gvS~r~f~RlFk~~~G~tpk~yl~~~Rl~~all~L~~s~~sItdIA~~~GY~ 187 (216)
T PRK15340 128 MRMLGEDYGVSYTHFRRLCSRALGGKAKSELRNWRMAQSLLNSVEGHENITQLAVNHGYS 187 (216)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhCCC
Confidence 45677888999999877665311111124556666555555554 458999999888876
No 500
>smart00478 ENDO3c endonuclease III. includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=31.78 E-value=60 Score=29.71 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=21.6
Q ss_pred ccchhhhhcCCCCCHHHHHHHHHcCCCC
Q psy15878 602 APNLRALMDLPGVKIGRARQLLNAGYSS 629 (693)
Q Consensus 602 ~~el~~l~~i~gi~~~~a~~L~~~g~~s 629 (693)
+...-.|.++||||+..|....-.|+.-
T Consensus 68 ~~~~~~L~~l~GIG~~tA~~~l~~~~~~ 95 (149)
T smart00478 68 PDDREELLKLPGVGRKTANAVLSFALGK 95 (149)
T ss_pred cHHHHHHHcCCCCcHHHHHHHHHHHCCC
Confidence 3455668899999999998877666655
Done!