Query psy15878
Match_columns 693
No_of_seqs 502 out of 3343
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 23:55:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zj8_A DNA helicase, putative 100.0 2.7E-73 9.2E-78 665.4 55.9 610 1-663 80-702 (720)
2 2va8_A SSO2462, SKI2-type heli 100.0 1.7E-73 5.7E-78 667.4 52.7 605 1-664 87-711 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 1.6E-72 5.6E-77 657.0 49.3 608 1-674 80-695 (702)
4 4f92_B U5 small nuclear ribonu 100.0 2.4E-72 8.2E-77 696.7 41.6 600 1-665 984-1615(1724)
5 4f92_B U5 small nuclear ribonu 100.0 1.6E-67 5.5E-72 653.6 42.1 600 1-663 146-780 (1724)
6 2xgj_A ATP-dependent RNA helic 100.0 5.1E-36 1.7E-40 357.3 33.4 355 1-382 141-547 (1010)
7 3l9o_A ATP-dependent RNA helic 100.0 2.9E-35 9.9E-40 353.7 27.7 360 1-384 239-647 (1108)
8 4a4z_A Antiviral helicase SKI2 100.0 2.3E-33 7.8E-38 334.5 32.1 357 1-382 94-541 (997)
9 2xau_A PRE-mRNA-splicing facto 100.0 1.9E-33 6.6E-38 327.3 18.9 361 2-450 153-536 (773)
10 2db3_A ATP-dependent RNA helic 100.0 1E-32 3.5E-37 303.2 21.0 264 1-328 141-407 (434)
11 2i4i_A ATP-dependent RNA helic 100.0 3.4E-32 1.2E-36 297.5 18.6 270 1-334 113-388 (417)
12 1s2m_A Putative ATP-dependent 100.0 6.4E-31 2.2E-35 285.8 22.3 277 1-348 101-387 (400)
13 3i5x_A ATP-dependent RNA helic 100.0 5.9E-31 2E-35 299.3 21.5 282 1-338 158-458 (563)
14 2j0s_A ATP-dependent RNA helic 100.0 3.5E-31 1.2E-35 289.0 18.8 276 1-345 117-402 (410)
15 1hv8_A Putative ATP-dependent 100.0 2.9E-30 9.9E-35 276.7 23.5 271 1-343 86-362 (367)
16 1oyw_A RECQ helicase, ATP-depe 100.0 1.1E-29 3.7E-34 284.7 28.0 360 1-435 77-505 (523)
17 3eiq_A Eukaryotic initiation f 100.0 5.7E-31 1.9E-35 287.4 16.7 278 1-345 120-406 (414)
18 3pey_A ATP-dependent RNA helic 100.0 1E-29 3.5E-34 275.3 23.5 262 1-328 87-356 (395)
19 3sqw_A ATP-dependent RNA helic 100.0 5.9E-30 2E-34 291.6 21.6 283 1-339 107-408 (579)
20 2z0m_A 337AA long hypothetical 100.0 8.6E-30 2.9E-34 269.9 20.9 257 1-336 68-329 (337)
21 2v1x_A ATP-dependent DNA helic 100.0 7.5E-30 2.6E-34 289.1 21.0 271 1-340 96-385 (591)
22 1xti_A Probable ATP-dependent 100.0 1.5E-29 5.1E-34 274.0 22.6 258 1-328 88-357 (391)
23 3fht_A ATP-dependent RNA helic 100.0 1.9E-29 6.4E-34 275.1 22.8 265 1-328 107-379 (412)
24 1fuu_A Yeast initiation factor 100.0 6E-31 2.1E-35 285.2 4.7 278 1-345 101-385 (394)
25 3oiy_A Reverse gyrase helicase 100.0 1.1E-28 3.8E-33 269.6 17.2 262 1-339 76-376 (414)
26 3fho_A ATP-dependent RNA helic 100.0 4.8E-29 1.6E-33 279.3 14.5 282 1-346 201-491 (508)
27 3fmp_B ATP-dependent RNA helic 100.0 2.7E-29 9.1E-34 279.9 7.8 266 1-328 174-446 (479)
28 4a2p_A RIG-I, retinoic acid in 99.9 7.9E-28 2.7E-32 272.8 15.4 291 1-328 67-508 (556)
29 3rc3_A ATP-dependent RNA helic 99.9 3.1E-26 1.1E-30 261.0 20.5 259 1-348 191-463 (677)
30 3tbk_A RIG-I helicase domain; 99.9 3E-27 1E-31 267.9 10.4 288 1-328 64-507 (555)
31 2ykg_A Probable ATP-dependent 99.9 1.3E-26 4.5E-31 270.2 14.4 121 178-331 397-518 (696)
32 4gl2_A Interferon-induced heli 99.9 5.4E-26 1.9E-30 265.1 18.6 112 179-328 400-519 (699)
33 1wp9_A ATP-dependent RNA helic 99.9 7.9E-26 2.7E-30 251.1 18.8 108 178-328 360-475 (494)
34 4a2q_A RIG-I, retinoic acid in 99.9 3.1E-26 1.1E-30 270.2 15.9 291 1-328 308-749 (797)
35 1gku_B Reverse gyrase, TOP-RG; 99.9 5.3E-25 1.8E-29 264.8 17.4 220 1-293 111-352 (1054)
36 4a2w_A RIG-I, retinoic acid in 99.9 3.6E-25 1.2E-29 264.0 15.9 291 1-328 308-749 (936)
37 4ddu_A Reverse gyrase; topoiso 99.9 8.5E-25 2.9E-29 262.9 19.0 221 1-294 133-388 (1104)
38 1gm5_A RECG; helicase, replica 99.9 3.9E-25 1.3E-29 255.8 11.7 250 1-327 429-696 (780)
39 2jlq_A Serine protease subunit 99.9 1.5E-24 5.2E-29 238.9 14.8 209 38-328 86-311 (451)
40 2eyq_A TRCF, transcription-rep 99.9 1.3E-23 4.3E-28 254.3 23.1 250 1-328 664-922 (1151)
41 1yks_A Genome polyprotein [con 99.9 9.8E-24 3.3E-28 231.5 14.6 204 44-325 72-296 (440)
42 2whx_A Serine protease/ntpase/ 99.9 2.8E-23 9.5E-28 236.0 17.1 207 39-326 254-476 (618)
43 2v6i_A RNA helicase; membrane, 99.9 4.9E-23 1.7E-27 225.4 18.4 229 1-325 43-288 (431)
44 2oca_A DAR protein, ATP-depend 99.9 3.7E-23 1.3E-27 232.1 16.8 264 1-326 169-453 (510)
45 2fwr_A DNA repair protein RAD2 99.9 8.6E-24 3E-28 234.9 10.6 256 2-328 146-454 (472)
46 1tf5_A Preprotein translocase 99.9 1.4E-23 4.8E-28 238.3 11.5 282 1-328 136-545 (844)
47 3o8b_A HCV NS3 protease/helica 99.9 7.4E-23 2.5E-27 230.6 17.0 229 1-328 269-514 (666)
48 2z83_A Helicase/nucleoside tri 99.9 3.6E-23 1.2E-27 228.4 13.6 208 39-328 89-313 (459)
49 2fsf_A Preprotein translocase 99.9 8.7E-23 3E-27 231.1 13.3 117 168-328 426-583 (853)
50 2wv9_A Flavivirin protease NS2 99.9 3.5E-22 1.2E-26 228.4 16.3 196 53-326 320-531 (673)
51 1nkt_A Preprotein translocase 99.9 8.5E-22 2.9E-26 223.2 14.6 282 1-328 164-617 (922)
52 3eaq_A Heat resistant RNA depe 99.9 8.7E-21 3E-25 187.0 16.5 126 167-335 17-144 (212)
53 2rb4_A ATP-dependent RNA helic 99.8 8.9E-21 3.1E-25 181.2 15.5 129 169-336 22-154 (175)
54 2hjv_A ATP-dependent RNA helic 99.8 1.2E-20 4E-25 178.2 16.0 127 168-337 22-150 (163)
55 1fuk_A Eukaryotic initiation f 99.8 9.6E-21 3.3E-25 179.2 12.9 139 168-349 17-160 (165)
56 3dmq_A RNA polymerase-associat 99.8 4.1E-20 1.4E-24 220.9 20.8 141 169-349 491-636 (968)
57 3h1t_A Type I site-specific re 99.8 5.2E-20 1.8E-24 210.1 19.4 240 38-315 273-545 (590)
58 1t5i_A C_terminal domain of A 99.8 2.8E-20 9.5E-25 177.1 13.6 119 168-328 18-138 (172)
59 2jgn_A DBX, DDX3, ATP-dependen 99.8 3.9E-20 1.3E-24 178.2 12.5 124 168-334 32-158 (185)
60 3i32_A Heat resistant RNA depe 99.8 7.2E-20 2.5E-24 189.2 14.8 126 167-335 14-141 (300)
61 2p6n_A ATP-dependent RNA helic 99.8 1.1E-19 3.6E-24 176.0 14.8 119 168-328 42-161 (191)
62 1c4o_A DNA nucleotide excision 99.8 2E-19 6.8E-24 206.4 17.9 112 178-328 438-550 (664)
63 2d7d_A Uvrabc system protein B 99.8 4.7E-19 1.6E-23 203.2 18.7 112 178-328 444-556 (661)
64 1z63_A Helicase of the SNF2/RA 99.8 6E-19 2.1E-23 197.3 16.5 126 178-342 340-467 (500)
65 2yjt_D ATP-dependent RNA helic 99.6 1.9E-20 6.6E-25 178.0 0.0 124 168-334 17-142 (170)
66 3jux_A Protein translocase sub 99.7 3.7E-17 1.3E-21 181.5 20.8 116 169-328 460-587 (822)
67 1z3i_X Similar to RAD54-like; 99.7 1.7E-16 6E-21 182.0 18.7 111 178-328 415-528 (644)
68 3mwy_W Chromo domain-containin 99.7 1.2E-16 4.1E-21 188.0 15.8 111 178-328 571-684 (800)
69 3im1_A Protein SNU246, PRE-mRN 99.7 3.5E-17 1.2E-21 171.8 7.0 211 419-666 6-216 (328)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.6 2.3E-15 7.8E-20 178.8 19.1 70 253-327 637-708 (1038)
71 2q0z_X Protein Pro2281; SEC63, 99.6 2.4E-16 8.3E-21 166.0 9.3 208 420-665 11-219 (339)
72 1z5z_A Helicase of the SNF2/RA 99.5 1.2E-13 4.3E-18 140.7 11.2 120 169-328 98-224 (271)
73 3fe2_A Probable ATP-dependent 99.3 1.2E-12 4.1E-17 131.5 4.1 113 1-118 114-227 (242)
74 3ly5_A ATP-dependent RNA helic 99.2 3.1E-12 1E-16 130.1 5.2 113 1-117 138-251 (262)
75 3iuy_A Probable ATP-dependent 99.2 7.7E-12 2.6E-16 124.2 6.6 111 1-117 106-217 (228)
76 1vec_A ATP-dependent RNA helic 99.2 1.3E-11 4.3E-16 120.5 8.0 106 1-111 83-189 (206)
77 1qde_A EIF4A, translation init 99.2 2.3E-11 7.9E-16 120.4 8.1 114 1-120 94-209 (224)
78 1q0u_A Bstdead; DEAD protein, 99.2 1.1E-11 3.7E-16 122.4 5.6 106 1-111 84-193 (219)
79 3bor_A Human initiation factor 99.2 2.6E-11 9E-16 121.2 8.0 112 1-117 110-223 (237)
80 1wrb_A DJVLGB; RNA helicase, D 99.2 1.4E-11 4.6E-16 124.6 5.8 115 1-117 112-228 (253)
81 2ipc_A Preprotein translocase 99.2 3E-10 1E-14 128.9 17.0 76 1-78 132-215 (997)
82 2oxc_A Probable ATP-dependent 99.2 1.5E-11 5.3E-16 122.3 5.5 111 1-119 104-216 (230)
83 3ber_A Probable ATP-dependent 99.2 1.7E-11 5.7E-16 123.6 5.4 114 1-118 123-237 (249)
84 2pl3_A Probable ATP-dependent 99.1 2.8E-11 9.5E-16 120.9 5.4 113 1-118 109-222 (236)
85 2gxq_A Heat resistant RNA depe 99.1 3.2E-11 1.1E-15 117.7 5.2 112 1-119 84-196 (207)
86 3dkp_A Probable ATP-dependent 99.1 4.2E-11 1.4E-15 120.3 3.8 111 1-111 110-222 (245)
87 1t6n_A Probable ATP-dependent 99.0 1.2E-10 4.1E-15 114.9 4.7 112 1-117 94-209 (220)
88 3fmo_B ATP-dependent RNA helic 99.0 2E-10 6.8E-15 119.0 6.6 111 1-118 174-287 (300)
89 2w9m_A Polymerase X; SAXS, DNA 98.7 9.4E-09 3.2E-13 115.5 6.6 139 525-686 36-181 (578)
90 3b6e_A Interferon-induced heli 98.7 1E-08 3.5E-13 100.2 5.7 106 2-108 95-216 (216)
91 3llm_A ATP-dependent RNA helic 98.7 1.5E-08 5.2E-13 100.9 6.1 77 38-122 154-230 (235)
92 1rif_A DAR protein, DNA helica 98.6 5.4E-08 1.9E-12 99.7 7.3 96 1-111 169-264 (282)
93 1wcn_A Transcription elongatio 98.6 9.6E-08 3.3E-12 74.6 6.5 55 607-662 8-62 (70)
94 1b22_A DNA repair protein RAD5 98.6 1E-08 3.5E-13 88.2 0.8 74 604-679 24-97 (114)
95 1vq8_Y 50S ribosomal protein L 98.5 7.1E-09 2.4E-13 101.8 -1.2 84 602-689 11-106 (241)
96 1u9l_A Transcription elongatio 98.3 4.2E-07 1.4E-11 70.7 4.7 59 606-665 6-64 (70)
97 3b0x_A DNA polymerase beta fam 98.2 1.5E-06 5.1E-11 97.7 7.6 87 601-690 88-182 (575)
98 4gfj_A Topoisomerase V; helix- 98.1 3.4E-06 1.2E-10 85.6 6.5 50 605-657 467-516 (685)
99 2fz4_A DNA repair protein RAD2 98.1 3.5E-06 1.2E-10 83.8 5.8 76 16-113 156-232 (237)
100 2a1j_A DNA repair endonuclease 98.0 6.4E-06 2.2E-10 63.0 5.8 52 606-661 4-56 (63)
101 1kft_A UVRC, excinuclease ABC 97.9 4.3E-06 1.5E-10 67.3 3.5 53 606-660 24-76 (78)
102 1z00_A DNA excision repair pro 97.9 2E-05 6.8E-10 65.2 6.4 55 606-662 19-73 (89)
103 1x2i_A HEF helicase/nuclease; 97.8 1.9E-05 6.4E-10 63.0 5.4 55 606-662 14-68 (75)
104 1jms_A Terminal deoxynucleotid 97.8 9.1E-06 3.1E-10 85.8 4.4 77 600-690 115-198 (381)
105 2vl7_A XPD; helicase, unknown 97.8 4.9E-05 1.7E-09 85.0 10.6 107 178-328 383-521 (540)
106 2a1j_B DNA excision repair pro 97.8 1.8E-05 6.3E-10 65.7 5.4 54 606-661 32-85 (91)
107 1z00_B DNA repair endonuclease 97.8 2.2E-05 7.6E-10 63.5 5.6 51 607-661 19-70 (84)
108 2fmp_A DNA polymerase beta; nu 97.8 1.7E-05 5.7E-10 82.5 5.4 78 598-690 89-174 (335)
109 2bcq_A DNA polymerase lambda; 97.7 5.6E-05 1.9E-09 78.4 8.1 70 605-690 94-171 (335)
110 4a15_A XPD helicase, ATP-depen 97.6 0.00038 1.3E-08 78.9 13.9 115 172-328 440-584 (620)
111 2ihm_A POL MU, DNA polymerase 97.6 4E-05 1.4E-09 80.4 5.3 76 600-690 96-178 (360)
112 1cuk_A RUVA protein; DNA repai 97.5 8.5E-05 2.9E-09 71.0 5.8 56 607-664 74-132 (203)
113 1ixr_A Holliday junction DNA h 97.5 7.4E-05 2.5E-09 70.6 5.0 56 607-664 73-131 (191)
114 2owo_A DNA ligase; protein-DNA 97.4 0.00014 4.8E-09 81.6 6.2 66 591-660 434-500 (671)
115 2i1q_A DNA repair and recombin 97.3 0.00025 8.6E-09 73.6 7.0 69 607-676 4-72 (322)
116 1pzn_A RAD51, DNA repair and r 97.3 0.00036 1.2E-08 73.3 7.6 71 606-677 35-106 (349)
117 1dgs_A DNA ligase; AMP complex 97.1 0.00021 7.3E-09 80.1 4.1 67 590-660 428-495 (667)
118 3crv_A XPD/RAD3 related DNA he 97.1 0.0098 3.4E-07 66.4 17.8 124 172-339 385-542 (551)
119 2bgw_A XPF endonuclease; hydro 97.1 0.00058 2E-08 66.6 5.8 53 607-661 163-215 (219)
120 4glx_A DNA ligase; inhibitor, 97.0 0.00071 2.4E-08 74.8 6.7 65 592-660 435-500 (586)
121 2nrt_A Uvrabc system protein C 97.0 0.00056 1.9E-08 65.6 4.8 50 606-659 168-218 (220)
122 3bqs_A Uncharacterized protein 97.0 0.00074 2.5E-08 55.6 4.8 52 605-656 3-54 (93)
123 3c1y_A DNA integrity scanning 96.9 0.00064 2.2E-08 70.2 4.9 60 604-665 313-372 (377)
124 3c65_A Uvrabc system protein C 96.9 0.00014 4.9E-09 70.1 0.0 52 606-660 173-224 (226)
125 2z43_A DNA repair and recombin 96.8 0.00023 7.8E-09 74.1 0.9 77 599-676 5-81 (324)
126 2ztd_A Holliday junction ATP-d 96.7 0.00092 3.1E-08 64.0 4.2 56 608-664 90-147 (212)
127 3lda_A DNA repair protein RAD5 96.7 0.0023 7.8E-08 68.2 7.1 71 606-677 81-153 (400)
128 2duy_A Competence protein come 96.7 0.0014 4.8E-08 52.0 4.0 46 604-658 25-71 (75)
129 1s5l_U Photosystem II 12 kDa e 96.6 0.0018 6.3E-08 56.1 4.5 54 602-664 59-113 (134)
130 3mab_A Uncharacterized protein 96.6 0.0021 7.2E-08 52.8 4.6 50 606-655 4-53 (93)
131 1z3e_B DNA-directed RNA polyme 96.4 0.006 2.1E-07 47.6 6.1 50 613-663 15-64 (73)
132 3arc_U Photosystem II 12 kDa e 96.4 0.0025 8.7E-08 52.8 4.1 53 602-663 22-75 (97)
133 3k4g_A DNA-directed RNA polyme 96.3 0.0074 2.5E-07 48.5 6.3 50 613-663 18-67 (86)
134 3gfk_B DNA-directed RNA polyme 96.1 0.0058 2E-07 48.3 4.5 52 610-663 20-71 (79)
135 2owo_A DNA ligase; protein-DNA 95.9 0.0055 1.9E-07 68.8 5.2 50 609-660 515-564 (671)
136 1v5w_A DMC1, meiotic recombina 95.5 0.003 1E-07 66.1 0.7 71 606-677 25-97 (343)
137 1dgs_A DNA ligase; AMP complex 95.3 0.014 4.9E-07 65.4 5.5 50 610-661 511-560 (667)
138 3sgi_A DNA ligase; HET: DNA AM 95.0 0.0043 1.5E-07 68.7 0.0 65 592-660 446-517 (615)
139 1coo_A RNA polymerase alpha su 95.0 0.02 6.7E-07 47.2 3.9 50 613-663 30-79 (98)
140 2kz3_A Putative uncharacterize 94.9 0.071 2.4E-06 42.6 7.0 51 610-661 8-58 (83)
141 2edu_A Kinesin-like protein KI 94.7 0.025 8.6E-07 47.2 4.0 45 606-659 40-89 (98)
142 3sgi_A DNA ligase; HET: DNA AM 94.6 0.0058 2E-07 67.6 0.0 52 608-661 531-582 (615)
143 4glx_A DNA ligase; inhibitor, 94.6 0.043 1.5E-06 60.7 6.8 51 609-661 515-565 (586)
144 4dez_A POL IV 1, DNA polymeras 94.3 0.048 1.6E-06 57.1 6.2 52 606-660 178-229 (356)
145 3hgt_A HDA1 complex subunit 3; 92.8 0.85 2.9E-05 46.4 12.0 116 178-338 124-246 (328)
146 3osn_A DNA polymerase IOTA; ho 92.7 0.12 4E-06 55.3 5.9 51 607-660 235-285 (420)
147 3gqc_A DNA repair protein REV1 92.5 0.11 3.6E-06 56.8 5.2 52 606-660 315-366 (504)
148 3i4u_A ATP-dependent RNA helic 92.4 0.075 2.6E-06 53.1 3.6 50 396-450 16-65 (270)
149 2i5h_A Hypothetical protein AF 92.2 0.22 7.5E-06 46.3 6.2 35 601-635 127-165 (205)
150 1jx4_A DNA polymerase IV (fami 92.2 0.076 2.6E-06 55.5 3.6 52 606-660 178-229 (352)
151 3bq0_A POL IV, DBH, DNA polyme 91.7 0.076 2.6E-06 55.5 2.9 52 606-660 179-230 (354)
152 4f4y_A POL IV, DNA polymerase 91.2 0.075 2.5E-06 55.7 2.2 52 606-660 179-230 (362)
153 2aq4_A DNA repair protein REV1 90.9 0.15 5.2E-06 54.7 4.3 52 606-660 241-295 (434)
154 3crv_A XPD/RAD3 related DNA he 90.7 0.052 1.8E-06 60.5 0.4 41 38-82 147-189 (551)
155 1gm5_A RECG; helicase, replica 89.5 1.1 3.6E-05 51.9 10.0 81 178-290 416-497 (780)
156 1im4_A DBH; DNA polymerase PAL 88.3 0.14 4.7E-06 49.6 1.3 37 606-642 184-220 (221)
157 4ecq_A DNA polymerase ETA; tra 87.2 0.29 9.9E-06 52.6 3.1 52 606-660 253-305 (435)
158 1t94_A Polymerase (DNA directe 87.0 0.79 2.7E-05 49.5 6.5 51 606-660 282-332 (459)
159 3pzp_A DNA polymerase kappa; D 86.4 0.88 3E-05 49.8 6.5 51 606-660 338-388 (517)
160 4b21_A Probable DNA-3-methylad 85.8 1.8 6.2E-05 41.9 7.7 64 627-692 95-162 (232)
161 4e9f_A Methyl-CPG-binding doma 84.5 1.3 4.5E-05 40.2 5.6 45 619-664 53-99 (161)
162 1ci4_A Protein (barrier-TO-aut 84.3 0.84 2.9E-05 36.4 3.6 31 604-634 16-46 (89)
163 3oiy_A Reverse gyrase helicase 83.6 2.1 7.3E-05 45.2 7.9 80 178-290 63-146 (414)
164 1pu6_A 3-methyladenine DNA gly 83.1 1.9 6.6E-05 41.3 6.5 73 619-692 52-133 (218)
165 2ihm_A POL MU, DNA polymerase 81.8 1.4 4.7E-05 45.8 5.3 54 606-659 61-121 (360)
166 2bcq_A DNA polymerase lambda; 81.5 2.4 8.3E-05 43.5 6.9 55 605-659 56-115 (335)
167 2eyq_A TRCF, transcription-rep 80.9 5.8 0.0002 48.0 11.0 81 178-290 651-732 (1151)
168 4gfj_A Topoisomerase V; helix- 80.6 0.42 1.4E-05 49.0 0.8 115 543-665 557-681 (685)
169 2h56_A DNA-3-methyladenine gly 80.6 4.4 0.00015 39.2 8.1 63 627-692 84-150 (233)
170 3n5n_X A/G-specific adenine DN 80.4 0.9 3.1E-05 45.5 3.1 66 622-691 74-140 (287)
171 2fmp_A DNA polymerase beta; nu 80.1 1.7 5.7E-05 44.7 5.1 54 606-659 57-117 (335)
172 3s6i_A DNA-3-methyladenine gly 80.1 5.8 0.0002 38.2 8.7 65 625-691 82-150 (228)
173 4ddu_A Reverse gyrase; topoiso 78.2 4.6 0.00016 48.5 8.9 81 177-290 119-203 (1104)
174 2vl7_A XPD; helicase, unknown 77.6 0.91 3.1E-05 50.2 2.4 41 38-78 143-188 (540)
175 3i0w_A 8-oxoguanine-DNA-glycos 75.5 6.4 0.00022 39.5 7.8 61 627-691 158-222 (290)
176 1exn_A 5'-exonuclease, 5'-nucl 75.0 2 6.9E-05 43.0 3.9 43 610-661 207-250 (290)
177 1jms_A Terminal deoxynucleotid 74.1 10 0.00035 39.5 9.2 54 606-659 80-140 (381)
178 2ztd_A Holliday junction ATP-d 73.3 10 0.00035 35.9 8.2 79 602-683 119-209 (212)
179 1kea_A Possible G-T mismatches 73.2 1.8 6E-05 41.7 2.9 66 621-691 59-126 (221)
180 2y9u_A Tumor protein 63; apopt 71.6 6.7 0.00023 29.9 5.2 43 619-663 20-62 (69)
181 2v1x_A ATP-dependent DNA helic 69.3 11 0.00037 41.9 8.6 61 177-273 82-144 (591)
182 3lu0_A DNA-directed RNA polyme 69.0 1 3.4E-05 45.9 0.0 48 615-663 263-310 (329)
183 1oyw_A RECQ helicase, ATP-depe 68.9 12 0.00042 40.8 8.9 61 178-274 64-124 (523)
184 2csb_A Topoisomerase V, TOP61; 68.7 5.5 0.00019 38.2 5.0 112 547-662 355-469 (519)
185 1kg2_A A/G-specific adenine gl 68.4 2.7 9.3E-05 40.5 3.0 64 622-690 55-119 (225)
186 2ziu_A MUS81 protein; helix-ha 68.2 6.4 0.00022 39.8 5.9 32 607-639 238-269 (311)
187 1orn_A Endonuclease III; DNA r 67.9 2.4 8.3E-05 40.9 2.5 60 627-690 62-123 (226)
188 3fe2_A Probable ATP-dependent 66.9 26 0.00088 33.5 9.9 77 178-290 101-183 (242)
189 2abk_A Endonuclease III; DNA-r 66.0 2.1 7.2E-05 40.8 1.6 38 627-664 58-97 (211)
190 2a6h_A DNA-directed RNA polyme 65.7 1.3 4.3E-05 45.0 0.0 47 615-662 262-308 (315)
191 3mfi_A DNA polymerase ETA; DNA 65.6 2.9 9.8E-05 45.7 2.8 52 606-660 307-385 (520)
192 2yg9_A DNA-3-methyladenine gly 64.6 8.8 0.0003 36.8 5.8 62 628-691 93-157 (225)
193 1t6n_A Probable ATP-dependent 64.6 24 0.00082 33.0 9.0 78 179-290 82-165 (220)
194 2xgj_A ATP-dependent RNA helic 64.5 10 0.00035 45.1 7.5 71 530-601 932-1002(1010)
195 1y88_A Hypothetical protein AF 64.3 22 0.00076 33.2 8.2 87 572-665 108-197 (199)
196 2xhi_A N-glycosylase/DNA lyase 60.8 18 0.00062 37.3 7.7 63 626-691 195-264 (360)
197 2gxq_A Heat resistant RNA depe 59.6 32 0.0011 31.6 8.8 75 178-290 71-151 (207)
198 2edu_A Kinesin-like protein KI 59.6 6.6 0.00023 32.2 3.4 25 603-627 67-91 (98)
199 2jhn_A ALKA, 3-methyladenine D 59.6 9 0.00031 38.5 5.0 59 627-690 161-220 (295)
200 3vdp_A Recombination protein R 58.8 12 0.00042 35.1 5.3 31 606-643 26-56 (212)
201 2w9m_A Polymerase X; SAXS, DNA 58.4 9.4 0.00032 42.3 5.4 52 608-659 59-116 (578)
202 1r7j_A Conserved hypothetical 57.8 23 0.00078 28.7 6.3 36 397-434 34-69 (95)
203 3ber_A Probable ATP-dependent 53.7 47 0.0016 31.8 9.1 76 179-290 111-193 (249)
204 3fsp_A A/G-specific adenine gl 53.4 6.5 0.00022 40.9 2.8 65 622-691 64-129 (369)
205 1mpg_A ALKA, 3-methyladenine D 52.0 20 0.00069 35.6 6.1 64 626-691 154-218 (282)
206 2y9t_A Tumor protein 63; apopt 51.7 11 0.00038 29.7 3.2 43 619-663 22-64 (82)
207 1v38_A SAM-domain protein sams 51.4 27 0.00093 27.1 5.5 59 603-664 13-72 (78)
208 2duy_A Competence protein come 50.9 4.4 0.00015 31.4 0.8 28 632-660 20-47 (75)
209 3n0u_A Probable N-glycosylase/ 49.4 41 0.0014 31.9 7.5 34 630-663 76-113 (219)
210 1vdd_A Recombination protein R 48.8 20 0.00069 33.9 5.1 19 607-625 13-31 (228)
211 3fhg_A Mjogg, N-glycosylase/DN 48.5 12 0.00042 35.2 3.7 62 631-692 60-129 (207)
212 1gku_B Reverse gyrase, TOP-RG; 48.3 20 0.00069 42.8 6.3 66 178-273 98-163 (1054)
213 3arc_U Photosystem II 12 kDa e 46.6 4.3 0.00015 33.3 0.1 31 627-658 14-44 (97)
214 3bor_A Human initiation factor 46.2 31 0.0011 32.7 6.4 78 178-290 97-180 (237)
215 1tc3_C Protein (TC3 transposas 45.4 23 0.00077 23.8 3.9 26 539-564 18-43 (51)
216 3m8j_A FOCB protein; all-alpha 45.3 44 0.0015 27.8 6.0 43 536-578 53-96 (111)
217 2pl3_A Probable ATP-dependent 45.1 39 0.0013 31.9 6.9 75 178-289 96-177 (236)
218 3h8m_A Ephrin type-A receptor 45.0 40 0.0014 27.0 5.7 44 618-663 40-84 (90)
219 3vdp_A Recombination protein R 44.9 23 0.00079 33.2 4.8 39 643-684 29-67 (212)
220 2oxc_A Probable ATP-dependent 44.4 44 0.0015 31.5 7.1 76 178-289 91-172 (230)
221 3bzc_A TEX; helix-turn-helix, 44.2 14 0.00049 42.2 3.9 49 603-660 505-558 (785)
222 3kka_C Ephrin type-A receptor 44.1 41 0.0014 26.7 5.5 43 619-663 37-80 (86)
223 1vec_A ATP-dependent RNA helic 43.4 81 0.0028 28.7 8.7 77 178-289 70-152 (206)
224 3b0x_A DNA polymerase beta fam 43.3 72 0.0025 35.1 9.4 51 608-659 55-112 (575)
225 3iuy_A Probable ATP-dependent 43.0 52 0.0018 30.8 7.4 76 178-290 93-174 (228)
226 1kea_A Possible G-T mismatches 42.8 25 0.00086 33.4 4.9 29 601-629 110-138 (221)
227 1s5l_U Photosystem II 12 kDa e 42.8 6 0.0002 34.3 0.4 31 628-659 52-82 (134)
228 1rxw_A Flap structure-specific 41.6 13 0.00046 37.9 3.0 28 610-638 239-266 (336)
229 3ly5_A ATP-dependent RNA helic 40.9 66 0.0023 31.1 7.9 77 178-290 125-208 (262)
230 3l7w_A Putative uncharacterize 40.4 87 0.003 25.6 7.4 71 351-434 7-83 (108)
231 3hil_A Ephrin type-A receptor 40.2 24 0.00082 27.8 3.5 43 618-662 38-81 (82)
232 2fsf_A Preprotein translocase 40.1 51 0.0017 37.9 7.6 59 178-274 114-172 (853)
233 1kg2_A A/G-specific adenine gl 39.6 18 0.00063 34.5 3.4 28 601-628 104-131 (225)
234 4a15_A XPD helicase, ATP-depen 39.4 11 0.00036 42.3 1.9 39 38-79 174-218 (620)
235 1x2i_A HEF helicase/nuclease; 39.1 17 0.00059 27.5 2.6 21 605-625 45-65 (75)
236 1wrb_A DJVLGB; RNA helicase, D 38.9 47 0.0016 31.7 6.4 75 179-289 100-180 (253)
237 3oio_A Transcriptional regulat 38.5 52 0.0018 27.1 5.8 60 496-555 25-85 (113)
238 3te6_A Regulatory protein SIR3 38.2 41 0.0014 34.0 5.9 47 64-113 131-177 (318)
239 2gno_A DNA polymerase III, gam 38.0 52 0.0018 32.9 6.7 99 4-106 4-119 (305)
240 2zix_A Crossover junction endo 37.5 3.1 0.00011 42.2 -2.6 52 606-658 233-298 (307)
241 4esb_A Transcriptional regulat 37.3 1.1E+02 0.0039 25.4 7.7 73 351-434 7-86 (115)
242 3l9o_A ATP-dependent RNA helic 37.3 11 0.00038 45.3 1.7 50 533-582 1033-1082(1108)
243 1b0x_A Protein (EPHA4 receptor 37.2 56 0.0019 26.2 5.5 45 618-664 41-86 (94)
244 1ucv_A Ephrin type-A receptor 36.9 56 0.0019 25.4 5.3 44 619-664 23-67 (81)
245 1xti_A Probable ATP-dependent 36.8 75 0.0026 32.3 8.0 78 179-290 76-159 (391)
246 2o8x_A Probable RNA polymerase 36.8 39 0.0013 24.8 4.3 30 539-568 28-57 (70)
247 3elk_A Putative transcriptiona 36.7 74 0.0025 26.7 6.5 81 347-438 8-95 (117)
248 2k9s_A Arabinose operon regula 36.7 64 0.0022 26.2 6.0 55 497-555 23-82 (107)
249 1pu6_A 3-methyladenine DNA gly 36.6 30 0.001 32.8 4.3 28 602-629 117-144 (218)
250 1b4f_A EPHB2; SAM domain, EPH 36.5 59 0.002 25.3 5.4 44 619-664 27-71 (82)
251 3q8k_A Flap endonuclease 1; he 36.1 16 0.00056 37.4 2.5 27 610-637 236-262 (341)
252 2jrt_A Uncharacterized protein 36.0 40 0.0014 27.3 4.3 33 528-560 35-67 (95)
253 3s2w_A Transcriptional regulat 35.7 1.2E+02 0.0039 26.4 8.1 38 397-434 78-120 (159)
254 1tf5_A Preprotein translocase 35.4 69 0.0024 36.8 7.7 58 178-273 123-180 (844)
255 1njg_A DNA polymerase III subu 35.1 50 0.0017 30.6 5.8 41 64-108 125-165 (250)
256 2k4p_A Phosphatidylinositol-3, 34.9 63 0.0021 25.6 5.3 57 602-662 26-84 (86)
257 3fhf_A Mjogg, N-glycosylase/DN 34.8 30 0.001 32.7 4.0 60 631-692 71-137 (214)
258 1vdd_A Recombination protein R 34.7 38 0.0013 32.1 4.5 39 643-684 15-53 (228)
259 4aik_A Transcriptional regulat 34.5 1.5E+02 0.0051 25.7 8.5 37 397-433 60-101 (151)
260 1a5t_A Delta prime, HOLB; zinc 34.4 67 0.0023 32.4 7.0 64 40-107 74-146 (334)
261 2kso_A Ephrin type-A receptor 34.4 46 0.0016 26.0 4.4 48 613-663 27-75 (82)
262 2e8n_A Ephrin type-A receptor 34.2 55 0.0019 25.9 4.9 44 619-664 28-72 (88)
263 4e9f_A Methyl-CPG-binding doma 34.1 32 0.0011 31.0 3.8 23 601-623 99-121 (161)
264 3mn2_A Probable ARAC family tr 34.0 77 0.0026 25.7 6.1 59 497-555 21-82 (108)
265 3oou_A LIN2118 protein; protei 33.6 67 0.0023 26.1 5.6 56 496-555 23-83 (108)
266 2qvo_A Uncharacterized protein 33.5 44 0.0015 26.6 4.4 36 397-433 44-82 (95)
267 2dl0_A SAM and SH3 domain-cont 33.5 37 0.0013 27.6 3.8 45 618-664 38-83 (97)
268 3lsg_A Two-component response 32.9 72 0.0025 25.6 5.7 56 496-555 21-81 (103)
269 3hug_A RNA polymerase sigma fa 32.9 81 0.0028 24.8 5.8 32 539-570 50-81 (92)
270 1qde_A EIF4A, translation init 32.5 39 0.0013 31.5 4.5 75 178-289 81-161 (224)
271 2qkq_A Ephrin type-B receptor 32.3 78 0.0027 24.6 5.5 45 618-664 30-75 (83)
272 2h09_A Transcriptional regulat 32.1 1.5E+02 0.0052 25.6 8.2 36 397-433 68-103 (155)
273 1z00_A DNA excision repair pro 32.0 26 0.00088 27.8 2.6 20 606-625 51-70 (89)
274 2jpc_A SSRB; DNA binding prote 31.8 45 0.0015 23.8 3.8 28 539-566 10-37 (61)
275 2h56_A DNA-3-methyladenine gly 31.7 69 0.0023 30.6 6.1 47 613-660 102-158 (233)
276 1jr3_A DNA polymerase III subu 31.6 61 0.0021 32.9 6.2 51 52-106 106-156 (373)
277 3k0l_A Repressor protein; heli 31.6 1.3E+02 0.0043 26.3 7.6 37 397-433 74-115 (162)
278 3eco_A MEPR; mutlidrug efflux 31.5 1.9E+02 0.0065 24.1 8.6 38 397-434 61-103 (139)
279 2glo_A Brinker CG9653-PA; prot 31.4 75 0.0026 22.6 4.9 25 540-564 19-47 (59)
280 1kft_A UVRC, excinuclease ABC 31.3 22 0.00075 27.4 2.0 20 606-625 56-75 (78)
281 2wte_A CSA3; antiviral protein 31.2 1.2E+02 0.0043 29.0 7.9 40 397-436 180-219 (244)
282 2i5h_A Hypothetical protein AF 31.0 35 0.0012 31.7 3.6 27 635-662 128-154 (205)
283 3f3x_A Transcriptional regulat 30.9 98 0.0033 26.3 6.6 38 397-434 64-106 (144)
284 3g3z_A NMB1585, transcriptiona 30.7 1.3E+02 0.0044 25.6 7.3 36 397-432 59-99 (145)
285 2r2a_A Uncharacterized protein 30.7 20 0.00068 33.5 1.9 43 66-109 88-133 (199)
286 1tty_A Sigma-A, RNA polymerase 30.4 65 0.0022 25.2 4.8 27 541-567 37-63 (87)
287 1on2_A Transcriptional regulat 30.1 1.8E+02 0.0061 24.6 8.2 37 397-434 36-72 (142)
288 3n5n_X A/G-specific adenine DN 30.1 55 0.0019 32.5 5.1 29 601-629 123-152 (287)
289 1ixr_A Holliday junction DNA h 30.0 27 0.00093 32.4 2.7 59 602-660 103-170 (191)
290 2abk_A Endonuclease III; DNA-r 30.0 39 0.0013 31.8 3.9 28 601-628 104-131 (211)
291 1wp9_A ATP-dependent RNA helic 29.9 1E+02 0.0035 32.1 7.8 76 178-290 51-132 (494)
292 4esf_A PADR-like transcription 29.6 2.2E+02 0.0074 23.6 8.3 72 352-434 10-88 (117)
293 3ech_A MEXR, multidrug resista 29.5 1E+02 0.0035 26.2 6.4 37 397-433 65-106 (142)
294 2csb_A Topoisomerase V, TOP61; 29.5 2.4E+02 0.0083 26.9 9.1 101 545-651 410-510 (519)
295 1ul1_X Flap endonuclease-1; pr 29.4 32 0.0011 35.8 3.4 26 611-637 237-262 (379)
296 3bos_A Putative DNA replicatio 29.3 1.3E+02 0.0044 27.9 7.7 74 4-79 38-118 (242)
297 1bja_A Transcription regulator 29.0 73 0.0025 25.8 4.8 36 397-434 45-80 (95)
298 1nkt_A Preprotein translocase 29.0 1.1E+02 0.0036 35.5 7.8 58 178-273 151-208 (922)
299 2a1j_B DNA excision repair pro 28.8 27 0.00091 27.9 2.2 21 605-625 63-83 (91)
300 1fse_A GERE; helix-turn-helix 28.8 58 0.002 24.1 4.1 29 539-567 23-51 (74)
301 2pg4_A Uncharacterized protein 28.8 96 0.0033 24.4 5.7 37 397-433 44-84 (95)
302 3bdd_A Regulatory protein MARR 28.7 2.5E+02 0.0086 23.3 9.0 36 397-432 59-99 (142)
303 3oop_A LIN2960 protein; protei 28.7 1E+02 0.0035 26.1 6.3 37 397-433 65-106 (143)
304 1x40_A ARAP2; ASAP-related pro 28.6 55 0.0019 26.2 4.0 45 618-664 30-75 (91)
305 3fhf_A Mjogg, N-glycosylase/DN 28.6 37 0.0013 32.1 3.4 59 602-660 78-145 (214)
306 1orn_A Endonuclease III; DNA r 28.4 46 0.0016 31.7 4.2 28 601-628 108-135 (226)
307 1ku3_A Sigma factor SIGA; heli 28.3 79 0.0027 23.6 4.8 28 541-568 29-56 (73)
308 4b21_A Probable DNA-3-methylad 28.2 76 0.0026 30.3 5.7 32 629-660 136-170 (232)
309 1cuk_A RUVA protein; DNA repai 28.0 31 0.0011 32.4 2.7 23 602-624 104-126 (203)
310 2eao_A Ephrin type-B receptor 28.0 85 0.0029 25.4 5.2 44 619-664 38-82 (99)
311 2ipc_A Preprotein translocase 27.8 83 0.0028 36.5 6.6 59 178-274 119-177 (997)
312 2kg5_A ARF-GAP, RHO-GAP domain 27.8 97 0.0033 25.2 5.4 59 603-664 27-86 (100)
313 2jhn_A ALKA, 3-methyladenine D 27.8 46 0.0016 33.2 4.2 24 605-628 209-232 (295)
314 2p8t_A Hypothetical protein PH 27.6 65 0.0022 30.0 4.8 34 397-432 44-77 (200)
315 3maj_A DNA processing chain A; 27.6 75 0.0026 32.9 5.8 32 606-638 26-57 (382)
316 2p7v_B Sigma-70, RNA polymeras 27.6 65 0.0022 23.7 4.1 28 540-567 23-50 (68)
317 3jw4_A Transcriptional regulat 27.6 1.3E+02 0.0043 25.7 6.8 38 397-434 71-113 (148)
318 3e6m_A MARR family transcripti 27.2 1.7E+02 0.0057 25.4 7.6 38 397-434 81-123 (161)
319 1jgs_A Multiple antibiotic res 26.8 1.6E+02 0.0055 24.5 7.2 38 397-434 62-104 (138)
320 3hhh_A Transcriptional regulat 26.8 2.1E+02 0.0072 23.7 7.6 72 352-434 12-90 (116)
321 1w36_D RECD, exodeoxyribonucle 26.8 38 0.0013 37.6 3.7 35 65-106 262-296 (608)
322 2izo_A FEN1, flap structure-sp 26.5 24 0.00083 36.1 1.9 26 610-636 238-263 (346)
323 3mkl_A HTH-type transcriptiona 26.2 1.4E+02 0.0047 24.7 6.4 58 497-555 26-84 (120)
324 1b43_A Protein (FEN-1); nuclea 26.0 43 0.0015 34.1 3.7 26 610-636 241-266 (340)
325 1x3u_A Transcriptional regulat 26.0 67 0.0023 24.2 4.0 28 539-566 28-55 (79)
326 2yg9_A DNA-3-methyladenine gly 26.0 53 0.0018 31.3 4.0 48 613-660 110-166 (225)
327 3syl_A Protein CBBX; photosynt 25.9 71 0.0024 31.4 5.3 43 66-108 131-178 (309)
328 2x48_A CAG38821; archeal virus 25.7 46 0.0016 23.2 2.8 26 539-564 28-53 (55)
329 3t72_q RNA polymerase sigma fa 25.4 93 0.0032 25.3 4.9 38 534-571 28-68 (99)
330 1je8_A Nitrate/nitrite respons 25.4 71 0.0024 24.6 4.1 28 539-566 33-60 (82)
331 3bpv_A Transcriptional regulat 25.2 1.5E+02 0.005 24.8 6.6 37 397-433 57-98 (138)
332 3hsr_A HTH-type transcriptiona 25.2 1.4E+02 0.0047 25.3 6.4 38 397-434 64-106 (140)
333 2db3_A ATP-dependent RNA helic 25.2 95 0.0033 32.5 6.4 76 179-290 129-210 (434)
334 3s6i_A DNA-3-methyladenine gly 25.1 98 0.0034 29.4 5.8 26 606-631 139-164 (228)
335 4b8x_A SCO5413, possible MARR- 25.0 1.8E+02 0.0063 24.9 7.3 37 397-433 65-106 (147)
336 2a1j_A DNA repair endonuclease 24.7 39 0.0013 24.9 2.3 21 640-660 4-24 (63)
337 2j0s_A ATP-dependent RNA helic 24.7 1.7E+02 0.0058 29.8 8.3 77 178-290 104-186 (410)
338 1bl0_A Protein (multiple antib 24.6 1.2E+02 0.0042 25.4 5.9 55 497-555 30-89 (129)
339 2i4i_A ATP-dependent RNA helic 24.4 1.2E+02 0.004 31.2 6.9 75 180-290 102-182 (417)
340 2kp7_A Crossover junction endo 24.4 42 0.0014 26.7 2.5 20 606-625 58-77 (87)
341 3psf_A Transcription elongatio 24.4 58 0.002 38.4 4.7 42 606-656 717-764 (1030)
342 4hbl_A Transcriptional regulat 24.4 94 0.0032 26.7 5.2 36 397-432 69-109 (149)
343 2a61_A Transcriptional regulat 24.2 1.7E+02 0.0059 24.5 7.0 38 397-434 61-103 (145)
344 1fuu_A Yeast initiation factor 24.1 82 0.0028 32.0 5.6 59 178-273 88-146 (394)
345 3f8b_A Transcriptional regulat 24.0 2.7E+02 0.0093 22.9 7.8 73 353-434 12-91 (116)
346 2elh_A CG11849-PA, LD40883P; s 23.8 1.1E+02 0.0037 23.8 5.0 24 541-564 37-60 (87)
347 1s2m_A Putative ATP-dependent 23.7 1.7E+02 0.0057 29.7 7.9 77 178-290 88-170 (400)
348 2fbh_A Transcriptional regulat 23.7 1.7E+02 0.0057 24.7 6.7 38 397-434 66-108 (146)
349 3fhg_A Mjogg, N-glycosylase/DN 23.4 62 0.0021 30.3 4.0 59 601-659 66-136 (207)
350 3bj6_A Transcriptional regulat 23.4 1.7E+02 0.0058 24.9 6.8 38 397-434 68-110 (152)
351 1a76_A Flap endonuclease-1 pro 23.3 44 0.0015 33.8 3.1 23 610-634 229-251 (326)
352 2hr3_A Probable transcriptiona 23.3 1.7E+02 0.0057 24.7 6.7 38 397-434 64-106 (147)
353 2rdp_A Putative transcriptiona 23.2 2E+02 0.0067 24.4 7.2 37 397-433 70-111 (150)
354 3nrv_A Putative transcriptiona 22.9 1.6E+02 0.0056 24.9 6.5 38 397-434 68-110 (148)
355 2co5_A Viral protein F93; vira 22.8 2.2E+02 0.0076 22.9 6.7 37 398-434 45-83 (99)
356 3fmo_B ATP-dependent RNA helic 22.6 78 0.0027 31.4 4.8 74 179-290 162-242 (300)
357 2ao9_A Phage protein; structur 22.6 3E+02 0.01 24.3 8.0 38 542-579 48-85 (155)
358 3tbk_A RIG-I helicase domain; 22.5 76 0.0026 34.1 5.1 76 179-290 52-134 (555)
359 3nqo_A MARR-family transcripti 22.4 2.4E+02 0.0082 25.3 7.9 37 397-433 71-112 (189)
360 2orw_A Thymidine kinase; TMTK, 22.3 75 0.0026 28.9 4.3 15 64-78 75-89 (184)
361 1tbx_A ORF F-93, hypothetical 22.2 1.1E+02 0.0037 24.2 4.8 38 397-434 40-79 (99)
362 1okr_A MECI, methicillin resis 22.2 2.9E+02 0.0099 22.5 7.8 36 398-433 43-81 (123)
363 3mzy_A RNA polymerase sigma-H 22.0 1.2E+02 0.0042 26.0 5.6 32 539-570 121-152 (164)
364 1s7o_A Hypothetical UPF0122 pr 21.9 1.7E+02 0.0057 24.3 6.0 32 539-570 35-66 (113)
365 3hrs_A Metalloregulator SCAR; 21.9 1.7E+02 0.0057 27.3 6.7 36 397-433 34-69 (214)
366 1jr3_D DNA polymerase III, del 21.8 92 0.0032 31.3 5.3 56 50-109 61-117 (343)
367 2nnn_A Probable transcriptiona 21.8 1.7E+02 0.0059 24.3 6.4 38 397-434 66-108 (140)
368 2nyx_A Probable transcriptiona 21.7 1.7E+02 0.0058 25.7 6.5 38 397-434 73-115 (168)
369 1lj9_A Transcriptional regulat 21.7 1.9E+02 0.0064 24.3 6.7 37 397-433 57-98 (144)
370 3r8n_M 30S ribosomal protein S 21.6 46 0.0016 28.0 2.3 39 605-643 15-54 (114)
371 3kp7_A Transcriptional regulat 21.5 1.3E+02 0.0043 25.9 5.5 37 397-433 65-108 (151)
372 2w7n_A TRFB transcriptional re 21.5 72 0.0024 26.1 3.4 30 539-568 31-60 (101)
373 4a2q_A RIG-I, retinoic acid in 21.4 1.1E+02 0.0039 35.0 6.5 76 179-290 296-378 (797)
374 1z00_B DNA repair endonuclease 21.3 66 0.0023 25.3 3.1 25 637-661 15-39 (84)
375 2eth_A Transcriptional regulat 21.2 1.9E+02 0.0066 24.7 6.7 38 397-434 72-114 (154)
376 3deu_A Transcriptional regulat 21.2 1.3E+02 0.0045 26.5 5.6 37 397-433 82-123 (166)
377 2x4h_A Hypothetical protein SS 21.1 1.1E+02 0.0039 25.8 5.0 35 397-433 45-79 (139)
378 2qww_A Transcriptional regulat 21.0 1.8E+02 0.0062 24.8 6.5 38 397-434 69-113 (154)
379 3bro_A Transcriptional regulat 21.0 1.8E+02 0.0062 24.2 6.4 37 397-433 64-105 (141)
380 1q0u_A Bstdead; DEAD protein, 20.8 68 0.0023 29.7 3.7 23 179-201 72-94 (219)
381 2hjv_A ATP-dependent RNA helic 20.8 90 0.0031 27.5 4.4 61 5-73 47-111 (163)
382 1s3j_A YUSO protein; structura 20.7 1.8E+02 0.0061 24.8 6.4 38 397-434 65-107 (155)
383 2p65_A Hypothetical protein PF 20.7 69 0.0024 28.3 3.6 14 65-78 115-128 (187)
384 2z0m_A 337AA long hypothetical 20.7 99 0.0034 30.5 5.2 76 177-289 54-135 (337)
385 1xsv_A Hypothetical UPF0122 pr 20.7 1.7E+02 0.0057 24.2 5.7 33 539-571 38-70 (113)
386 2chg_A Replication factor C sm 20.5 85 0.0029 28.5 4.4 41 64-108 101-141 (226)
387 2kjq_A DNAA-related protein; s 20.4 68 0.0023 28.0 3.4 30 63-93 81-110 (149)
388 3tgn_A ADC operon repressor AD 20.1 1.4E+02 0.0049 25.2 5.5 63 355-434 40-107 (146)
No 1
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.7e-73 Score=665.44 Aligned_cols=610 Identities=22% Similarity=0.293 Sum_probs=472.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|+++.|+++. ..|++|..++|+..... ++..+++|+|+|||++..++++ ...+++++++||+||+|+++++
T Consensus 80 La~q~~~~~~~l~-~~g~~v~~~~G~~~~~~---~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~ 153 (720)
T 2zj8_A 80 LAEEKFQEFQDWE-KIGLRVAMATGDYDSKD---EWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKILVADEIHLIGSR 153 (720)
T ss_dssp GHHHHHHHTGGGG-GGTCCEEEECSCSSCCC---GGGGGCSEEEECHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCT
T ss_pred HHHHHHHHHHHHH-hcCCEEEEecCCCCccc---cccCCCCEEEECHHHHHHHHHc--ChhhhhcCCEEEEECCcccCCC
Confidence 6889999996554 46999999999764332 2346899999999999887765 4456899999999999999998
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNL 160 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (693)
.||..++.++.+++ .++|+|+||||++|++++++|+++..+..++||+++...+......+..... . .
T Consensus 154 ~r~~~~~~ll~~l~---~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~--~----~--- 221 (720)
T 2zj8_A 154 DRGATLEVILAHML---GKAQIIGLSATIGNPEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGS--I----D--- 221 (720)
T ss_dssp TTHHHHHHHHHHHB---TTBEEEEEECCCSCHHHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETTSC--E----E---
T ss_pred cccHHHHHHHHHhh---cCCeEEEEcCCcCCHHHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccccc--h----h---
Confidence 99999999999986 3799999999999999999999998899999999998766544433221110 0 0
Q ss_pred cccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhh
Q psy15878 161 DYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILY 240 (693)
Q Consensus 161 ~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~ 240 (693)
......+.+.+.+.+++++||||+|++.|+.++..|.+. . .......+...+.........+..+..|.+++..
T Consensus 222 ---~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~--~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 295 (720)
T 2zj8_A 222 ---RFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKK--V-KSLLTKPEIRALNELADSLEENPTNEKLAKAIRG 295 (720)
T ss_dssp ---ECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH--H-GGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTT
T ss_pred ---hhhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHH--H-HHhcChhhHHHHHHHHHHHhcccchHHHHHHHhc
Confidence 012234556666668899999999999999999999862 1 1111112222221111111122234458888999
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEe----cCcCCCccCCHHHHHHHhhccCCCCCC
Q psy15878 241 GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR----DSYVGRDFISLNMYKQMVGRAGRTGLQ 316 (693)
Q Consensus 241 gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~----~~~~g~~~~s~~~~~Qr~GRaGR~g~d 316 (693)
|+++|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ ++..|..|.|..+|.||+|||||+|+|
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~ 375 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYD 375 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTC
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999998 332344689999999999999999999
Q ss_pred CCCcEEEEecccccHHH-HHHHHhCCCCcccccCC-chhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhhh
Q psy15878 317 ESGESIMLCKTMQDFLR-FSSMMNAGPEPISSHMD-PPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTF 394 (693)
Q Consensus 317 ~~G~~i~l~~~~~~~~~-~~~~l~~~~~~i~s~l~-~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~~ 394 (693)
..|.|++++++. +.+. +++++..++++++|++. ...+..+++.+++.|...+.+++.+|+.++|+++.. +. ..
T Consensus 376 ~~G~~~~l~~~~-~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~-~~---~~ 450 (720)
T 2zj8_A 376 EVGEGIIVSTSD-DPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQR-KD---TY 450 (720)
T ss_dssp SEEEEEEECSSS-CHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHC-SC---CH
T ss_pred CCceEEEEecCc-cHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhc-cc---hH
Confidence 999999999988 5443 56788888999999985 247999999999999999999999999999998711 10 01
Q ss_pred hhhhHHHHHHHHHhhcCCeE-eeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhhhccccccccccEEEeeccCCcc
Q psy15878 395 LETTLSEIVASLLASKGTML-TMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYR 473 (693)
Q Consensus 395 ~~~~~~~~~l~~L~~~g~i~-~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~~~~~~l~~~l~ll~l~~~~~~~ 473 (693)
...+.++.+++.|.+.|+|+ .+ ++.+.+|++|++++++|++|.+++.|..+++...+.-+..+.|++++....++
T Consensus 451 ~~~~~~~~~l~~L~~~~~i~~~~--~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~-- 526 (720)
T 2zj8_A 451 SLEEKIRNILYFLLENEFIEISL--EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDIT-- 526 (720)
T ss_dssp HHHHHHHHHHHHHHHTTSEEECT--TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCC--
T ss_pred HHHHHHHHHHHHHHHCCCeeECC--CCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCcccc--
Confidence 23456889999999999998 43 34599999999999999999999999999987532222334455544432232
Q ss_pred CCCCCccccccchhhHhhhcChhHHHHHHHcCccHHHHHHHhcC-Cchh---h--HHHHHHHHHHHHHHHHHhcCCCHHH
Q psy15878 474 IPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTG-KLKD---E--KKALLCRFFHACILYDVLNFDNHQK 547 (693)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gi~~~~~~~~~~~-~~~~---~--~~~~~~~~~~a~~l~~~i~e~~~~~ 547 (693)
++ ..+++....+..+ +.+. + . +.... +++. . ...++.++|++++|++|++|+|+..
T Consensus 527 ---~i--~~r~~e~~~l~~~------~~~~-~--~----~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~ 588 (720)
T 2zj8_A 527 ---PF--NYSKREFERLEEE------YYEF-K--D----RLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGE 588 (720)
T ss_dssp ---CC--CCCHHHHHHHHHH------HHHH-G--G----GCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred ---cc--ccCHHHHHHHHHH------HHhc-c--c----cccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHH
Confidence 22 2222221111110 0000 0 0 00000 1111 1 3456789999999999999999999
Q ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcCC
Q psy15878 548 VAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGY 627 (693)
Q Consensus 548 i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~ 627 (693)
|+++|++.+|++++++++|.|+++++.+||+.++| +.....+..|.+||.+|+++|+++|++|||||+.+||+||++||
T Consensus 589 i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~-~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G~ 667 (720)
T 2zj8_A 589 IVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGA-YEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGF 667 (720)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTTC
T ss_pred HHHHhCCChHhHHHHHHHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcCC
Confidence 99999999999999999999999999999999995 34667888899999999999999999999999999999999999
Q ss_pred CCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 628 SSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 628 ~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
+|+.+|++++++++..+ +++|+++.+.+.+.++++
T Consensus 668 ~s~~dl~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~ 702 (720)
T 2zj8_A 668 RSIEDISQARPEELLKI-EGIGVKTVEAIFKFLGKN 702 (720)
T ss_dssp CSHHHHHTCCHHHHHTS-TTCCHHHHHHHHHHHC--
T ss_pred CCHHHHHhCCHHHHHHh-HhHHHHHHHHHHHhcccc
Confidence 99999999999999995 788888888887777654
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.7e-73 Score=667.38 Aligned_cols=605 Identities=23% Similarity=0.285 Sum_probs=463.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|+++.|+.+ ...|++|..++|+...... +..+++|+|+|||++..++++ ...+++++++||+||+|++++.
T Consensus 87 La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~ 160 (715)
T 2va8_A 87 LTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRH--RPEWLNEVNYFVLDELHYLNDP 160 (715)
T ss_dssp HHHHHHHHHGGG-GGGTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHH--CCGGGGGEEEEEECSGGGGGCT
T ss_pred HHHHHHHHHHHh-hcCCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhC--ChhHhhccCEEEEechhhcCCc
Confidence 578888888644 4579999999997654432 236899999999999877765 3345899999999999999988
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCc------eeeeecCCCCchh
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDK------RVFQSFDGKSLTE 154 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~------~~~~~~~~~~~~~ 154 (693)
.||..++.++.+++ ++|+|+||||++|++++++|+++..+..++||+++..++.... ..+... ...
T Consensus 161 ~~~~~l~~i~~~~~----~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~--~~~-- 232 (715)
T 2va8_A 161 ERGPVVESVTIRAK----RRNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKD--NTT-- 232 (715)
T ss_dssp TTHHHHHHHHHHHH----TSEEEEEESCCTTHHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETT--SCE--
T ss_pred ccchHHHHHHHhcc----cCcEEEEcCCCCCHHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCc--chh--
Confidence 89999999999885 7899999999999999999999999999999999987654322 111110 000
Q ss_pred hhcccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhc--cCCccch
Q psy15878 155 IYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEE--NDGKLST 232 (693)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~ 232 (693)
+.+ .......+.+.+.+.+++++||||+|++.|+.++..|.+ ......+...+..++....... ..+..++
T Consensus 233 -~~~----~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (715)
T 2va8_A 233 -KKV----HGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIAN--YMNFVSLDENALSEILKQLDDIEEGGSDEKE 305 (715)
T ss_dssp -EEE----ESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHH--TTTSSCCCHHHHHHHHHHHHTCCSSCHHHHH
T ss_pred -hhc----ccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHH--HHhhccCChHHHHHHHHHHHHhhhccccccH
Confidence 000 001112233444455889999999999999999999987 3211122233333332222221 1112346
Q ss_pred HHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEe----cC---cCCCccCCHHHHHH
Q psy15878 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR----DS---YVGRDFISLNMYKQ 305 (693)
Q Consensus 233 ~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~----~~---~~g~~~~s~~~~~Q 305 (693)
.|.+++..|+++|||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+ ++ ..+..|+|..+|.|
T Consensus 306 ~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Q 385 (715)
T 2va8_A 306 LLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQ 385 (715)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHH
T ss_pred HHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHH
Confidence 788888999999999999999999999999999999999999999999999999998 33 11235899999999
Q ss_pred HhhccCCCCCCCCCcEEEEecccccH-HHHHHHHhCCCCcccccCC-chhHHHHHHHHHHhcccCCHHHHHHHHHHhhhh
Q psy15878 306 MVGRAGRTGLQESGESIMLCKTMQDF-LRFSSMMNAGPEPISSHMD-PPTLVDLILEVVAANLCSSLEDVKTLIKHTLFY 383 (693)
Q Consensus 306 r~GRaGR~g~d~~G~~i~l~~~~~~~-~~~~~~l~~~~~~i~s~l~-~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~ 383 (693)
|+|||||.|+|..|.||+++++..+. ..+++++...+++++|++. ...+..+++.+++.|.+.+.+++.+|+.+||++
T Consensus 386 r~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~ 465 (715)
T 2va8_A 386 MSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLA 465 (715)
T ss_dssp HHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSC
T ss_pred HhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHH
Confidence 99999999999999999999887222 3456788888999999996 247899999999999999999999999999998
Q ss_pred hccCchhhhhhhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhhhccccccccccE
Q psy15878 384 QLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHM 463 (693)
Q Consensus 384 ~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~~~~~~l~~~l~l 463 (693)
. +. ....++.+++.|.+.|+|+.+ ++.+.+|++|++++++|++|.++++|..++..... .+..+.|++
T Consensus 466 ~------~~---~~~~~~~al~~L~~~g~i~~~--~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 533 (715)
T 2va8_A 466 K------QL---VDVYFDRAIRWLLEHSFIKEE--GNTFALTNFGKRVADLYINPFTADIIRKGLEGHKA-SCELAYLHL 533 (715)
T ss_dssp H------HH---HHHHHHHHHHHHHHTTSEEEC--SSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCC-CCHHHHHHH
T ss_pred h------hc---chHHHHHHHHHHHHCcCEeec--CCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccC-CCHHHHHHH
Confidence 7 22 223478999999999999965 34589999999999999999999999998877421 123344454
Q ss_pred EEeeccCCccCCCCCccccccchhhHhhhc-ChhHHHHHHHcCccHHHHHHHhcC-Cchh-hHHHHHHHHHHHHHHHHHh
Q psy15878 464 LFLVIPLEYRIPSDGILLSRSKVYDRYTKF-HPQTLRVAEALGVTENLVALNVTG-KLKD-EKKALLCRFFHACILYDVL 540 (693)
Q Consensus 464 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~gi~~~~~~~~~~~-~~~~-~~~~~~~~~~~a~~l~~~i 540 (693)
++.+.+++ ++ ..+++....+..+ .. .... .... +++. ...+++.++|++++|++|+
T Consensus 534 i~~~~e~~-----~~--~~r~~e~~~l~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~k~~~ll~~~~ 592 (715)
T 2va8_A 534 LAFTPDGP-----LV--SVGRNEEEELIELLED-------LDCE-------LLIEEPYEEDEYSLYINALKVALIMKDWM 592 (715)
T ss_dssp HHHSTTSC-----CC--CCCHHHHHHHHHHHTT-------CSSC-------CSSCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcccc-----cC--ccChHHHHHHHHHHHh-------cchh-------hcccccccccchhhhHHHHHHHHHHHHHH
Confidence 44433332 22 2222222111110 00 0000 0000 2222 2345678999999999999
Q ss_pred cCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHH
Q psy15878 541 NFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRAR 620 (693)
Q Consensus 541 ~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~ 620 (693)
+++++..|+++|++++|++|+++++|.|+++++.+||+.++| +.+...+..+.+||.+|+++|+++|+++||||+.|||
T Consensus 593 ~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~-~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar 671 (715)
T 2va8_A 593 DEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKL-NEHADKLRILNLRVRDGIKEELLELVQISGVGRKRAR 671 (715)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHH
T ss_pred cCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHH
Confidence 999999999999999999999999999999999999999995 4567889999999999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 621 QLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 621 ~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
+||++||+|+++|+ ++++++.+++ |++++++|++.|.+.+
T Consensus 672 ~L~~~g~~s~~~l~-~~~~~l~~~l---~~~~~~~i~~~~~~~~ 711 (715)
T 2va8_A 672 LLYNNGIKELGDVV-MNPDKVKNLL---GQKLGEKVVQEAARLL 711 (715)
T ss_dssp HHHHTTCCSHHHHH-HCHHHHHHHH---CHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHh-CCHHHHHHHh---ChhHHHHHHHHHHHhh
Confidence 99999999999999 9999999987 3899999999887653
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.6e-72 Score=656.98 Aligned_cols=608 Identities=25% Similarity=0.355 Sum_probs=469.0
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|+++.|+++ ...|++|..++|+..... ....+++|+|+|||++..++++ ...+++++++||+||+|++.++
T Consensus 80 La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~---~~~~~~~Iiv~Tpe~l~~~l~~--~~~~l~~~~~vIiDE~H~l~~~ 153 (702)
T 2p6r_A 80 LAGEKYESFKKW-EKIGLRIGISTGDYESRD---EHLGDCDIIVTTSEKADSLIRN--RASWIKAVSCLVVDEIHLLDSE 153 (702)
T ss_dssp HHHHHHHHHTTT-TTTTCCEEEECSSCBCCS---SCSTTCSEEEEEHHHHHHHHHT--TCSGGGGCCEEEETTGGGGGCT
T ss_pred HHHHHHHHHHHH-HhcCCEEEEEeCCCCcch---hhccCCCEEEECHHHHHHHHHc--ChhHHhhcCEEEEeeeeecCCC
Confidence 578889888654 446899999999765433 2336899999999999887775 3445899999999999999998
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNL 160 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (693)
.||..++.++.++++..+++|+|+||||++|++++++|++++.+..++||+++...+............. ...+
T Consensus 154 ~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~--~~~~---- 227 (702)
T 2p6r_A 154 KRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAF--STSR---- 227 (702)
T ss_dssp TTHHHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTTCEEEECCCCSSCEEEEEECSSEEEEEETTE--EEEE----
T ss_pred CcccHHHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHhCCCcccCCCCCccceEEEeeCCeeeccCcch--hhhh----
Confidence 9999999999999877788999999999999999999999999999999999987665443332211100 0000
Q ss_pred cccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhc--cCCCCcccchhhHHHHHHHHHhccCCccchHHHHHH
Q psy15878 161 DYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFD--RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECI 238 (693)
Q Consensus 161 ~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~ 238 (693)
.....+.+.+.+.+++++||||+|++.|+.++..|.+. ... ...+ ..+.+........+..|.+++
T Consensus 228 ----~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~-----~~~~---~~~~i~~~~~~~~~~~l~~~~ 295 (702)
T 2p6r_A 228 ----RVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYV-----ENEG---LEKAILEENEGEMSRKLAECV 295 (702)
T ss_dssp ----ECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTC-----CCSS---HHHHHHTTCCSHHHHHHHHHH
T ss_pred ----hhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-----ChHH---HHHHHHhhccccccHHHHHHH
Confidence 00123445555568899999999999999999999862 111 0011 122222222333456788888
Q ss_pred hhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecC--cCC-CccCCHHHHHHHhhccCCCCC
Q psy15878 239 LYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVG-RDFISLNMYKQMVGRAGRTGL 315 (693)
Q Consensus 239 ~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~--~~g-~~~~s~~~~~Qr~GRaGR~g~ 315 (693)
..|+++|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+.. |+| ..|.|..+|.||+|||||+|+
T Consensus 296 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~ 375 (702)
T 2p6r_A 296 RKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGM 375 (702)
T ss_dssp HTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTT
T ss_pred hcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999931 222 358999999999999999999
Q ss_pred CCCCcEEEEecccccHHH-HHHHHhCCCCcccccCCc-hhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhh
Q psy15878 316 QESGESIMLCKTMQDFLR-FSSMMNAGPEPISSHMDP-PTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQT 393 (693)
Q Consensus 316 d~~G~~i~l~~~~~~~~~-~~~~l~~~~~~i~s~l~~-~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~ 393 (693)
|..|.|++++++. +.+. +++++...+++++|++.. ..+..+++.+++.|.+.+.+++.+|+.+||+++ +..
T Consensus 376 ~~~G~~~~l~~~~-~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~------~~~ 448 (702)
T 2p6r_A 376 DERGEAIIIVGKR-DREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFK------QNE 448 (702)
T ss_dssp CSCEEEEEECCGG-GHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHH------HHC
T ss_pred CCCceEEEEecCc-cHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHH------hhh
Confidence 9999999999988 5444 346778889999999962 478999999999999999999999999999987 221
Q ss_pred hhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhhhhccccccccccEEEeeccCCcc
Q psy15878 394 FLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYR 473 (693)
Q Consensus 394 ~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~~~~~~l~~~l~ll~l~~~~~~~ 473 (693)
.+..+.++.+++.|.+.|+|+.+ +.+.+|++|++++++|++|.++++|...++.... +..+.|++++.+..++ .
T Consensus 449 ~~~~~~~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~i~~~~e~~-~ 522 (702)
T 2p6r_A 449 ISLSYELERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMEL--SDIGALHLICRTPDME-R 522 (702)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCC--CHHHHHHHHHHSTTSC-C
T ss_pred HHHHHHHHHHHHHHHHCcCeeEC---CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccC--CHHHHHHHhhCCcccc-c
Confidence 22345688999999999999865 4589999999999999999999999998876421 1123344444333232 2
Q ss_pred CCCCCccccccchhhHhhhcChhHHHHHHHcCccHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHhcCCCHHHHHHHh
Q psy15878 474 IPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKD-EKKALLCRFFHACILYDVLNFDNHQKVAKMY 552 (693)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gi~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~l~~~i~e~~~~~i~~~y 552 (693)
+ ..+.+...+...+.... .....++. +++ ....++.++|++++|++|++++++..|+++|
T Consensus 523 i------~~r~~e~~~~~~~~~~~---~~~~~~~~----------~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~ 583 (702)
T 2p6r_A 523 L------TVRKTDSWVEEEAFRLR---KELSYYPS----------DFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKY 583 (702)
T ss_dssp C------CCCTTTHHHHHHHHHHG---GGSSCCCC----------TTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred C------CCCCchHHHHHHHHhcc---ccccCCcc----------hhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHh
Confidence 2 12222211111110000 00011110 111 1335678999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcCCCCHHH
Q psy15878 553 GIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLEL 632 (693)
Q Consensus 553 ~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~ 632 (693)
++.+|++++++++|.|+++++.+||+.++ |. .+..|.+|+.+|+++|+++|++|||||+.+||+|+++||+|+.+
T Consensus 584 ~~~~gdl~~i~~~a~~l~~a~~~i~~~~g--~~---~l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g~~s~~~ 658 (702)
T 2p6r_A 584 GIAPGDLRRIVETAEWLSNAMNRIAEEVG--NT---SVSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAED 658 (702)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CC---SSTTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTTCCSHHH
T ss_pred CCcHHhHHHHHHHHHHHHHHHHHHHHHcC--HH---HHHHHHHHHHcCCCcchHhhhcCCCCCHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999999 55 88899999999999999999999999999999999999999999
Q ss_pred HHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy15878 633 IARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAM 674 (693)
Q Consensus 633 l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~ 674 (693)
|++++ +++.+++ |++.+++|++.|+ +...+++.+.++
T Consensus 659 l~~~~-~~l~~ll---~~~~~~~i~~~~~-~p~~~~~~~~~~ 695 (702)
T 2p6r_A 659 IVRHR-EKVASLI---GRGIAERVVEGIS-VKSLNPESAAAL 695 (702)
T ss_dssp HHHTH-HHHHHHH---CHHHHHHHHHHHH-HHC---------
T ss_pred HHhhh-HHHHHHh---ChhHHHHHHHhcC-CCccCcchhhhh
Confidence 99999 9999876 3999999999999 655455544433
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.4e-72 Score=696.69 Aligned_cols=600 Identities=19% Similarity=0.220 Sum_probs=482.4
Q ss_pred ChhhHHHHHHH-HhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAK-AAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~-~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
||+|++++|++ ++..+|++|..++|+.. ...+...+++|+|||||+++.+++++....+++++++||+||+|++++
T Consensus 984 La~q~~~~~~~~f~~~~g~~V~~ltGd~~---~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 984 LAEQVYMDWYEKFQDRLNKKVVLLTGETS---TDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEECCSCHH---HHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHHhchhcCCEEEEEECCCC---cchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC
Confidence 68999999975 56678999999998753 222334678999999999999999887777789999999999999987
Q ss_pred CCChHHHHHHHHHHhcc----CCCceEEEEcCcCCCHHHHHHhhcCCC-----ccCCCCcccceeeEEeCceeeeecCCC
Q psy15878 80 PQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIEGIT-----YVENSRPTKHSEYVTVDKRVFQSFDGK 150 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~----~~~~qii~lSATl~n~~~la~~l~~~~-----~~~~~rpv~l~~~~~~~~~~~~~~~~~ 150 (693)
.||+.++.++.++++. .+++|+|+||||++|++++++||++.. |..++||+++..++.. +....
T Consensus 1061 -~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~----~~~~~-- 1133 (1724)
T 4f92_B 1061 -ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQG----FNISH-- 1133 (1724)
T ss_dssp -TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEE----ECCCS--
T ss_pred -CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEe----ccCCC--
Confidence 6999999999998753 467899999999999999999999863 7889999999877642 11110
Q ss_pred CchhhhcccccccCCCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccC--CCCcccchhhHHHHHHHHHhc
Q psy15878 151 SLTEIYADNLDYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRF--PGTKEYKKQEKEDLIEALKEE 225 (693)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~--~~~~~~~~~~~~~~~~~l~~~ 225 (693)
...+.. .....+...+. +++++||||+||+.|+.+|..|..... ..+..+......++...+..
T Consensus 1134 --~~~~~~--------~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~- 1202 (1724)
T 4f92_B 1134 --TQTRLL--------SMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEK- 1202 (1724)
T ss_dssp --HHHHHH--------TTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTT-
T ss_pred --chhhhh--------hhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhh-
Confidence 000010 01112222222 789999999999999999998865211 11122212222233333332
Q ss_pred cCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecC--cCCC----ccCC
Q psy15878 226 NDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR----DFIS 299 (693)
Q Consensus 226 ~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~--~~g~----~~~s 299 (693)
..+..|.+++..||++|||||++.+|..||++|++|.++|||||+++++|||+|+++|||.+. ++|. .|++
T Consensus 1203 ---~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s 1279 (1724)
T 4f92_B 1203 ---LSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP 1279 (1724)
T ss_dssp ---CCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECC
T ss_pred ---cccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCC
Confidence 245789999999999999999999999999999999999999999999999999999999764 2332 4789
Q ss_pred HHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy15878 300 LNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKH 379 (693)
Q Consensus 300 ~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~ 379 (693)
..+|.||+|||||+|+|..|.|++++.+. +.+.+++++.++. |++|+| ...+.++++++|+.|.+.+.+++.+|+++
T Consensus 1280 ~~~~~Qm~GRAGR~g~d~~G~avll~~~~-~~~~~~~ll~~~~-pveS~L-~~~l~~~l~~eI~~~~i~~~~d~~~~l~~ 1356 (1724)
T 4f92_B 1280 IYDVLQMVGHANRPLQDDEGRCVIMCQGS-KKDFFKKFLYEPL-PVESHL-DHCMHDHFNAEIVTKTIENKQDAVDYLTW 1356 (1724)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEEEEGG-GHHHHHHHTTSCB-CCCCCG-GGSCHHHHHHHHHTTSCCBHHHHHHHHTT
T ss_pred HHHHHHhhccccCCCCCCceEEEEEecch-HHHHHHHHhCCCC-ceeeec-ccchHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 99999999999999999999999999998 8889999998775 899999 68899999999999999999999999999
Q ss_pred hhhhh--ccCchhhhh---------hhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhh
Q psy15878 380 TLFYQ--LKSPEDQQT---------FLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDL 448 (693)
Q Consensus 380 t~~~~--~~~p~~~~~---------~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l 448 (693)
||+|+ .+||.++.. ....+.++.+++.|.+.|+|..++ ++.+.+|++|++++++||+|.+++.|..++
T Consensus 1357 Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~-~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l 1435 (1724)
T 4f92_B 1357 TFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIED-EMDVAPLNLGMIAAYYYINYTTIELFSMSL 1435 (1724)
T ss_dssp SSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEET-TTEEEECHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred hHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcC-CCCEeecHHHHHHHHHCCCHHHHHHHHHhc
Confidence 99998 689988653 234566788999999999998754 346999999999999999999999999988
Q ss_pred hhhhccccccccccEEEeeccCCccCCCCCccccccchhhHhhhcChhHHHHHHHcCccHHHHHHHhcCCchhhHHHHHH
Q psy15878 449 LHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLC 528 (693)
Q Consensus 449 ~~~~~~~~l~~~l~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 528 (693)
+... .+.+.||+++.++++. ++ .++.++..++.++ .+.+++... ...+. -.
T Consensus 1436 ~~~~---~~~~~L~il~~a~ef~-----~i--~~R~~E~~~l~~l-------~~~~~~~~~------~~~~~------~~ 1486 (1724)
T 4f92_B 1436 NAKT---KVRGLIEIISNAAEYE-----NI--PIRHHEDNLLRQL-------AQKVPHKLN------NPKFN------DP 1486 (1724)
T ss_dssp CTTC---CHHHHHHHHHTSGGGT-----TC--CCCTTHHHHHHHH-------HHHSSSCCS------SCCTT------CH
T ss_pred cccC---CHHHHHHHhcCCcccc-----cc--cccccHHHHHHHH-------HhhCCCCCC------ccccC------CH
Confidence 7653 3678899999877774 33 3455554444332 223333210 00111 12
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhh
Q psy15878 529 RFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRAL 608 (693)
Q Consensus 529 ~~~~a~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l 608 (693)
.+|++++|++|++++++. ..| +||++++++++.|+++++++||..+|| +.....+..|.+|+.+|+++++.+|
T Consensus 1487 ~~K~~lLlqa~~~r~~l~---~~~---~~D~~~i~~~~~rl~~a~~d~~~~~g~-~~~~~~~~~l~q~l~~~~w~~~~~L 1559 (1724)
T 4f92_B 1487 HVKTNLLLQAHLSRMQLS---AEL---QSDTEEILSKAIRLIQACVDVLSSNGW-LSPALAAMELAQMVTQAMWSKDSYL 1559 (1724)
T ss_dssp HHHHHHHHHHHHTTCCCC---HHH---HHHHHHHHHHHHHHHHHHHHHHHHTTB-HHHHHHHHHHHHHHHTTCCTTSCGG
T ss_pred HHHHHHHHHHHHCCCcCC---hHH---HHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHhCCCcCCcCE
Confidence 568889999999999875 344 689999999999999999999999995 3456677889999999999999999
Q ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhh
Q psy15878 609 MDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFI 665 (693)
Q Consensus 609 ~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~ 665 (693)
++|||||+.+||+|+++||+|+.+|++++++++..++ ++++....+|.+.++++..
T Consensus 1560 ~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll-~~~~~~~~~i~~~~~~~P~ 1615 (1724)
T 4f92_B 1560 KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALL-QLTDSQIADVARFCNRYPN 1615 (1724)
T ss_dssp GGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSS-CCCHHHHHHHHHHHHHSCC
T ss_pred ecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHH-CCChHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999977 8899999999998887754
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.6e-67 Score=653.57 Aligned_cols=600 Identities=19% Similarity=0.261 Sum_probs=466.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||+|++++|++.+..+|++|..++|++...+ +...+++|+|||||+++.+++++....+++++++|||||+|+++|
T Consensus 146 La~e~~~~l~~~~~~~gi~V~~~tGd~~~~~---~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d- 221 (1724)
T 4f92_B 146 LVQEMVGSFGKRLATYGITVAELTGDHQLCK---EEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD- 221 (1724)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEECCSSCSSCC---TTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEECCCCCCc---cccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-
Confidence 6899999999998899999999999875433 223679999999999999998865556789999999999999988
Q ss_pred CChHHHHHHHHHHhc----cCCCceEEEEcCcCCCHHHHHHhhcCC------CccCCCCcccceeeEEeCceeeeecCCC
Q psy15878 81 QRGPILECVVSKVLY----LKKSIQIFAMSATIGNINALSTFIEGI------TYVENSRPTKHSEYVTVDKRVFQSFDGK 150 (693)
Q Consensus 81 ~rg~~le~il~~l~~----~~~~~qii~lSATl~n~~~la~~l~~~------~~~~~~rpv~l~~~~~~~~~~~~~~~~~ 150 (693)
.||+.+|.++.|+++ ..+++|+|+||||++|++++++||++. .|..++||+|+.+++. ......
T Consensus 222 ~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~------~~~~~~ 295 (1724)
T 4f92_B 222 DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYV------GITEKK 295 (1724)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECC------EECCCC
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEe------ccCCcc
Confidence 799999999998753 357899999999999999999999985 6788999999986542 111111
Q ss_pred CchhhhcccccccCCCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCC--CcccchhhHHHHHHHHHhc
Q psy15878 151 SLTEIYADNLDYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPG--TKEYKKQEKEDLIEALKEE 225 (693)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~--~~~~~~~~~~~~~~~l~~~ 225 (693)
.......+ .+.+...+. .++++||||+||+.|+.+|..|.+..... ...+. .......+.+...
T Consensus 296 ~~~~~~~~----------~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 364 (1724)
T 4f92_B 296 AIKRFQIM----------NEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFL-REGSASTEVLRTE 364 (1724)
T ss_dssp HHHHHHHH----------HHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCS-SCCTTCSSHHHHT
T ss_pred hhhhhHHH----------HHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhc-ccchhHHHHHHhh
Confidence 11100000 111222222 67899999999999999999987521000 00000 0000001112222
Q ss_pred cCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecC--cC---C-CccCC
Q psy15878 226 NDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YV---G-RDFIS 299 (693)
Q Consensus 226 ~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~--~~---g-~~~~s 299 (693)
.....+..|.+++..||++|||||++++|..||++|++|.++|||||+||++|||+|+++|||... +. | ..|+|
T Consensus 365 ~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls 444 (1724)
T 4f92_B 365 AEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELG 444 (1724)
T ss_dssp TSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECC
T ss_pred hcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCC
Confidence 333456789999999999999999999999999999999999999999999999999999999753 11 1 25799
Q ss_pred HHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHH
Q psy15878 300 LNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKH 379 (693)
Q Consensus 300 ~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~ 379 (693)
..+|+||+|||||+|+|..|++++++++. +...+..++.++. |++|++ ...+.++++++|+.|.+.+.+++.+|+.+
T Consensus 445 ~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~-~~~~~~~ll~~~~-pieS~l-~~~l~d~L~aeI~~g~i~~~~~a~~~l~~ 521 (1724)
T 4f92_B 445 ALDILQMLGRAGRPQYDTKGEGILITSHG-ELQYYLSLLNQQL-PIESQM-VSKLPDMLNAEIVLGNVQNAKDAVNWLGY 521 (1724)
T ss_dssp HHHHHHHHTTBSCTTTCSCEEEEEEEEST-TCCHHHHHTTTCS-CCCCCT-TTTHHHHHHHHHHHTSCCBHHHHHHHHHH
T ss_pred HHHHHHhhhhccCCCCCCccEEEEEecch-hHHHHHHHHcCCC-cchhhc-cccHHHHHHHHHHHhhcCCHHHHHHHHhc
Confidence 99999999999999999999999999988 8888888888776 799999 47788999999999999999999999999
Q ss_pred hhhhh--ccCchhhhh------------hhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHH
Q psy15878 380 TLFYQ--LKSPEDQQT------------FLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIY 445 (693)
Q Consensus 380 t~~~~--~~~p~~~~~------------~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~ 445 (693)
||+|. .+||..+.. ....+.+..+++.|.+.|+|..+++++.+.+|++|+++|++||++.++..|.
T Consensus 522 T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~ 601 (1724)
T 4f92_B 522 AYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYN 601 (1724)
T ss_dssp SHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHH
T ss_pred cHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHH
Confidence 99998 678876542 1233457788999999999998877788999999999999999999999999
Q ss_pred HhhhhhhccccccccccEEEeeccCCccCCCCCccccccchhhHhhhcChhHHHHHHHcCccHHHHHHHhcCCchhhHHH
Q psy15878 446 SDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKA 525 (693)
Q Consensus 446 ~~l~~~~~~~~l~~~l~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 525 (693)
+.++.... ..+.|++++.+.++. ++ .++.+....+.. +.+.++++. .+.+.+
T Consensus 602 ~~l~~~~~---~~~ll~~is~s~ef~-----~i--~~R~~E~~~l~~-------l~~~~~~~~-------~~~~~~---- 653 (1724)
T 4f92_B 602 QLLKPTLS---EIELFRVFSLSSEFK-----NI--TVREEEKLELQK-------LLERVPIPV-------KESIEE---- 653 (1724)
T ss_dssp HHCCTTCC---HHHHHHHHHTCGGGT-----TC--CCCGGGHHHHHH-------HHHHSSSCC-------CSCCSS----
T ss_pred hhcCCCCC---HHHHHHHHhCChhhc-----cC--CcCHHHHHHHHH-------HHhcCCCCc-------CCCCCC----
Confidence 88865532 345677777655553 22 234443322222 122233321 011111
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccch
Q psy15878 526 LLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNL 605 (693)
Q Consensus 526 ~~~~~~~a~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el 605 (693)
...+++++|++||++.++...+- .+|...+.++|.|++.++.++|...+| +.....+-.+.+++++|++++.
T Consensus 654 --~~~Kv~~Llq~~i~~~~~~~~~l-----~~D~~~i~~~a~ri~ra~~ei~~~~~~-~~~~~~~l~l~k~i~~~~w~~~ 725 (1724)
T 4f92_B 654 --PSAKINVLLQAFISQLKLEGFAL-----MADMVYVTQLAGRLMRAIFEIVLNRGW-AQLTDKTLNLCKMIDKRMWQSM 725 (1724)
T ss_dssp --HHHHHHHHHHHHHTTCCCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTB-HHHHHHHHHHHHHHHHTSCTTS
T ss_pred --hHHHHHHHHHHHHcCCCcccccH-----HHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhCCCCCC
Confidence 14477899999999998776553 378899999999999999999999994 3466778889999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
.+|.|+||||+.++++|.++|+ |+++|..+++.++...+ +. ++.+++|.+.++++
T Consensus 726 ~~L~q~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~l~~~~-~~-~~~g~~i~~~~~~~ 780 (1724)
T 4f92_B 726 CPLRQFRKLPEEVVKKIEKKNF-PFERLYDLNHNEIGELI-RM-PKMGKTIHKYVHLF 780 (1724)
T ss_dssp CGGGGSTTSCHHHHHHHHTSSC-CGGGGGGCCHHHHHHHH-TC-STTHHHHHHHHTTS
T ss_pred CceecCCCCCHHHHHHHHhcCC-CHHHHHhCCHHHHHHHH-CC-chHHHHHHHHHHHC
Confidence 9999999999999999999999 99999999999999988 32 45567777777655
No 6
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-36 Score=357.29 Aligned_cols=355 Identities=22% Similarity=0.310 Sum_probs=252.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|+++.|++++. +|+.++|+.... .+++|+|+|||++..++.+ ....+.++++|||||+|++.+.
T Consensus 141 La~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~--~~~~l~~l~lVViDEaH~l~d~ 207 (1010)
T 2xgj_A 141 LSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDK 207 (1010)
T ss_dssp HHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCT
T ss_pred HHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc--CcchhhcCCEEEEechhhhccc
Confidence 57899999988764 677788865321 4679999999998665543 3456799999999999999998
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcC------CCccCCCCcccceeeEEeCc--eeeeec-CCCC
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEG------ITYVENSRPTKHSEYVTVDK--RVFQSF-DGKS 151 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~------~~~~~~~rpv~l~~~~~~~~--~~~~~~-~~~~ 151 (693)
.||..++.++..+ ++++|+|+||||++|..++++|++. ..+..+++|+++..++.... ..+.+. ..+.
T Consensus 208 ~rg~~~e~il~~l---~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~ 284 (1010)
T 2xgj_A 208 ERGVVWEETIILL---PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKST 284 (1010)
T ss_dssp TTHHHHHHHHHHS---CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCC
T ss_pred chhHHHHHHHHhc---CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccc
Confidence 9999999988765 5789999999999999999999862 34667889999887765422 222221 1111
Q ss_pred ch---hhhccccc----------------ccCC-CC------ChhhHHHHH---h--cCCceEEEeCChHHHHHHHHHhh
Q psy15878 152 LT---EIYADNLD----------------YSLT-GS------GPDAVLHLV---Q--GNLMVLIFCSSKIACSNLALRLQ 200 (693)
Q Consensus 152 ~~---~~~~~~~~----------------~~~~-~~------~~~~l~~l~---~--~~~~vLVF~~sr~~~e~la~~L~ 200 (693)
+. +...+... +... .. ....+..++ . ...++||||+|++.|+.++..|.
T Consensus 285 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~ 364 (1010)
T 2xgj_A 285 FREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMS 364 (1010)
T ss_dssp BCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTT
T ss_pred cchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHH
Confidence 11 00000000 0000 00 022233333 2 55699999999999999999997
Q ss_pred hccCCCCcccchhhHHHHHHHHHhc------cCCcc--chHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEec
Q psy15878 201 FDRFPGTKEYKKQEKEDLIEALKEE------NDGKL--STNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCT 272 (693)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~--~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT 272 (693)
..++. ...++..+...+.+. .+..+ ...+..++..||++|||||++.+|..+++.|++|.++|||||
T Consensus 365 ~~~~~-----~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT 439 (1010)
T 2xgj_A 365 KLDFN-----SDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 439 (1010)
T ss_dssp TSCCC-----CHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred hCCCC-----ChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 63332 112222221111110 00111 134567788999999999999999999999999999999999
Q ss_pred chhhcccCCCCcEEEEe----cCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCccccc
Q psy15878 273 STLAAGVNLPAQRVIIR----DSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSH 348 (693)
Q Consensus 273 ~~l~~Gvnlp~~~vVI~----~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~ 348 (693)
+++++|||+|++++||+ ++..+..|.|..+|.||+|||||.|.|..|.|++++++..+...+.+++.+..+++.|+
T Consensus 440 ~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~ 519 (1010)
T 2xgj_A 440 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSA 519 (1010)
T ss_dssp GGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCC
T ss_pred hHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccc
Confidence 99999999999999999 44333458999999999999999998889999999987646677888999999999999
Q ss_pred CCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhh
Q psy15878 349 MDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLF 382 (693)
Q Consensus 349 l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~ 382 (693)
+. ....+++.++..+... . .+++..+|.
T Consensus 520 f~--~~~~~ilnll~~~~~~-~---e~ll~rsf~ 547 (1010)
T 2xgj_A 520 FH--LGYNMILNLMRVEGIS-P---EFMLEHSFF 547 (1010)
T ss_dssp CC--CCHHHHHHHHHSSSCC-H---HHHHHHCHH
T ss_pred cC--CcHHHHHHHHHhcCCC-H---HHHHHHHHH
Confidence 93 4466777777654432 2 445555554
No 7
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-35 Score=353.69 Aligned_cols=360 Identities=22% Similarity=0.319 Sum_probs=251.8
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|+++.|+.++. .|+.++|+.... .+++|+|+|||++..++.+ ....+.++++|||||||++.+.
T Consensus 239 La~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~--~~~~l~~l~lVVIDEaH~l~d~ 305 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDK 305 (1108)
T ss_dssp HHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHH--CSSHHHHEEEEEEETGGGTTSH
T ss_pred HHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHc--CccccccCCEEEEhhhhhcccc
Confidence 67899999988764 566788865421 4689999999997655543 2334789999999999999998
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcC------CCccCCCCcccceeeEEeC--ceeee-ecCCCC
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEG------ITYVENSRPTKHSEYVTVD--KRVFQ-SFDGKS 151 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~------~~~~~~~rpv~l~~~~~~~--~~~~~-~~~~~~ 151 (693)
.||..++.++..+ ++++|+|+||||++|..+++.|++. ..+..+++|+++..++... ...+. +.....
T Consensus 306 ~rg~~~e~ii~~l---~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~ 382 (1108)
T 3l9o_A 306 ERGVVWEETIILL---PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKST 382 (1108)
T ss_dssp HHHHHHHHHHHHS---CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTE
T ss_pred chHHHHHHHHHhc---CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccc
Confidence 8999999988765 5789999999999999999999863 3466788999987766431 11111 111111
Q ss_pred ch---hhhccccc--------------------ccC---CCCChhhHHHHHh-----cCCceEEEeCChHHHHHHHHHhh
Q psy15878 152 LT---EIYADNLD--------------------YSL---TGSGPDAVLHLVQ-----GNLMVLIFCSSKIACSNLALRLQ 200 (693)
Q Consensus 152 ~~---~~~~~~~~--------------------~~~---~~~~~~~l~~l~~-----~~~~vLVF~~sr~~~e~la~~L~ 200 (693)
+. +....... +.. .......+..++. .++++||||+|++.|+.++..|.
T Consensus 383 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~ 462 (1108)
T 3l9o_A 383 FREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMS 462 (1108)
T ss_dssp ECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTC
T ss_pred hhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHH
Confidence 10 00000000 000 0001233333333 56799999999999999999987
Q ss_pred hccCCCCcccchhhHHHH----HHHHHhccCC-ccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchh
Q psy15878 201 FDRFPGTKEYKKQEKEDL----IEALKEENDG-KLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTL 275 (693)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~-~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l 275 (693)
..++..+... ...... ...+...... .....+..++..||++|||+|++.+|..+++.|++|.++|||||+++
T Consensus 463 ~~~~~~~~e~--~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 463 KLDFNSDDEK--EALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp SHHHHCC------CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred hccCCCHHHH--HHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 6322110000 000000 0011111000 01134567788999999999999999999999999999999999999
Q ss_pred hcccCCCCcEEEEecC--cCCC--ccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCc
Q psy15878 276 AAGVNLPAQRVIIRDS--YVGR--DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDP 351 (693)
Q Consensus 276 ~~Gvnlp~~~vVI~~~--~~g~--~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~ 351 (693)
++|||+|++++||+++ +.+. .|+|..+|.||+|||||.|.|..|.||+++++..+...+.+++.+..+|+.|++
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f-- 618 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAF-- 618 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCC--
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCccccccc--
Confidence 9999999999999864 3333 378999999999999999999999999999887566778899999999999999
Q ss_pred hhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhh
Q psy15878 352 PTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384 (693)
Q Consensus 352 ~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~ 384 (693)
....++++.++..+.. +. .+++..+|...
T Consensus 619 ~~~y~~ilnll~~~~~-~~---~~~l~~sf~~~ 647 (1108)
T 3l9o_A 619 HLGYNMILNLMRVEGI-SP---EFMLEHSFFQF 647 (1108)
T ss_dssp CCCHHHHHHHHHSTTC-CH---HHHHHHSSHHH
T ss_pred CCcHHHHHHHHHhcCC-CH---HHHHHHHHHHH
Confidence 3456777777765544 22 67888888754
No 8
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.3e-33 Score=334.50 Aligned_cols=357 Identities=20% Similarity=0.299 Sum_probs=251.5
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|+++.|++++. ++++..++|+... ..+++|+|+|||++..++.. ....+.++++|||||+|++.++
T Consensus 94 La~Q~~~~l~~~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~lvViDEaH~l~d~ 162 (997)
T 4a4z_A 94 LSNQKFRDFKETFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYVNDQ 162 (997)
T ss_dssp GHHHHHHHHHTTC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHH--TCSGGGGEEEEEECCTTCCCTT
T ss_pred HHHHHHHHHHHHcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHh--CchhhcCCCEEEEECccccccc
Confidence 67888888887653 6788888887531 14689999999997554433 3345789999999999999999
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCC------CccCCCCcccceeeEEeCceeeeecCCC-Cch
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI------TYVENSRPTKHSEYVTVDKRVFQSFDGK-SLT 153 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~------~~~~~~rpv~l~~~~~~~~~~~~~~~~~-~~~ 153 (693)
.+|..++.++..+ ++++|+|+||||++|..++++|++.. .+...+||+|+..++......+...... .+.
T Consensus 163 ~~g~~~e~ii~~l---~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~ 239 (997)
T 4a4z_A 163 DRGVVWEEVIIML---PQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFL 239 (997)
T ss_dssp CTTCCHHHHHHHS---CTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBC
T ss_pred chHHHHHHHHHhc---ccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhh
Confidence 9999999988765 57899999999999999999999732 5678899999998876655555432211 000
Q ss_pred h---h------------------------------------hc----------------------------cccccc--C
Q psy15878 154 E---I------------------------------------YA----------------------------DNLDYS--L 164 (693)
Q Consensus 154 ~---~------------------------------------~~----------------------------~~~~~~--~ 164 (693)
. . +. ..+.+. .
T Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (997)
T 4a4z_A 240 EANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGP 319 (997)
T ss_dssp HHHHHHHHHHHC-----------------------------------------------------------------CCC
T ss_pred HHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 0 00 000000 0
Q ss_pred CCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCC--------ccchHH
Q psy15878 165 TGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDG--------KLSTNL 234 (693)
Q Consensus 165 ~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~L 234 (693)
.......+...+. ...++||||+|++.|+.++..|...++. ...++..+...+.+.... .-...+
T Consensus 320 ~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~-----~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l 394 (997)
T 4a4z_A 320 SKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFC-----NNKEKSQIHMFIEKSITRLKKEDRDLPQILKT 394 (997)
T ss_dssp CTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCC-----CHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHH
T ss_pred chhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHHHHHhcchhhhcchhHHHH
Confidence 1111223444444 5679999999999999999999764333 222222222222111100 011346
Q ss_pred HHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecC--cCC--CccCCHHHHHHHhhcc
Q psy15878 235 EECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVG--RDFISLNMYKQMVGRA 310 (693)
Q Consensus 235 ~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~--~~g--~~~~s~~~~~Qr~GRa 310 (693)
..++..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++.||+.+. ++| ..|+|..+|.||+|||
T Consensus 395 ~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRA 474 (997)
T 4a4z_A 395 RSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRA 474 (997)
T ss_dssp HHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGG
T ss_pred HHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhccc
Confidence 678889999999999999999999999999999999999999999999999988542 222 2478999999999999
Q ss_pred CCCCCCCCCcEEEEec-ccccHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhh
Q psy15878 311 GRTGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLF 382 (693)
Q Consensus 311 GR~g~d~~G~~i~l~~-~~~~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~ 382 (693)
||.|.|..|.|++++. ...+...+.+++.+..+++.|.+. ...++++.++..+.. .+.+++..+|.
T Consensus 475 GR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~--~~ynm~l~ll~~~~~----~~~~~l~~sf~ 541 (997)
T 4a4z_A 475 GRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFR--LTYNMILNLLRIEAL----RVEEMIKYSFS 541 (997)
T ss_dssp CCTTTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCC--CCHHHHHHHHHHCTT----HHHHHHHTSHH
T ss_pred ccCCCCcceEEEEecCCCcchHHHHHHHhcCCCcccccccc--cchHHHHHHHhhccc----cHHHHHHHHHH
Confidence 9999999999999984 332667778899999999999884 334455555433321 23445555554
No 9
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.9e-33 Score=327.26 Aligned_cols=361 Identities=16% Similarity=0.156 Sum_probs=238.1
Q ss_pred hhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEeccccc-CCC
Q psy15878 2 VHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHML-NEP 80 (693)
Q Consensus 2 ~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l-~d~ 80 (693)
+.|+++.+ +..++.++....|+...... .....++|+|+||+++. +.+.....+.++++||+||+|.. .+
T Consensus 153 a~q~~~~l---~~~~~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~---r~l~~~~~l~~~~~lIlDEah~R~ld- 223 (773)
T 2xau_A 153 AMSVAQRV---AEEMDVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLL---REAMEDHDLSRYSCIILDEAHERTLA- 223 (773)
T ss_dssp HHHHHHHH---HHHTTCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHH---HHHHHSTTCTTEEEEEECSGGGCCHH-
T ss_pred HHHHHHHH---HHHhCCchhheecceecccc--ccCCCCCEEEECHHHHH---HHHhhCccccCCCEEEecCccccccc-
Confidence 44554433 44456665555553222211 11257899999999854 44445567899999999999952 21
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcC-CCccCCCCcccceeeEEeCceeeeecCCCCchhhhccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEG-ITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADN 159 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (693)
...+..++..+....++.|+|+||||+ +.+.+++|++. ..+....+..++..++ .........
T Consensus 224 --~d~~~~~l~~l~~~~~~~~iIl~SAT~-~~~~l~~~~~~~~vi~v~gr~~pv~~~~--------~~~~~~~~~----- 287 (773)
T 2xau_A 224 --TDILMGLLKQVVKRRPDLKIIIMSATL-DAEKFQRYFNDAPLLAVPGRTYPVELYY--------TPEFQRDYL----- 287 (773)
T ss_dssp --HHHHHHHHHHHHHHCTTCEEEEEESCS-CCHHHHHHTTSCCEEECCCCCCCEEEEC--------CSSCCSCHH-----
T ss_pred --hHHHHHHHHHHHHhCCCceEEEEeccc-cHHHHHHHhcCCCcccccCcccceEEEE--------ecCCchhHH-----
Confidence 122233444444445688999999999 67889999974 3333444444433211 110000000
Q ss_pred ccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHH
Q psy15878 160 LDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEEC 237 (693)
Q Consensus 160 ~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~ 237 (693)
......+..+.. .++++||||+++++|+.++..|.+ .. ..+..... .
T Consensus 288 ------~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~--~~--------------~~l~~~~~---------~ 336 (773)
T 2xau_A 288 ------DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISL--EG--------------DQLVREEG---------C 336 (773)
T ss_dssp ------HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHH--HH--------------HHHHHHHC---------C
T ss_pred ------HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHH--HH--------------Hhhccccc---------C
Confidence 000112233332 689999999999999999999875 00 00000000 0
Q ss_pred HhhceEEEcCCCCHHHHHHHHHHHh-----CCCCeEEEecchhhcccCCCCcEEEEecCcC---------CC-----ccC
Q psy15878 238 ILYGVAYHHADLTAGERRLIEEAYL-----AGTLQIICCTSTLAAGVNLPAQRVIIRDSYV---------GR-----DFI 298 (693)
Q Consensus 238 ~~~gv~~~h~~l~~~eR~~ve~~f~-----~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~---------g~-----~~~ 298 (693)
....+.++||+|+.++|..+++.|+ +|.++|||||+++++|||+|++++||+++.. |. .|+
T Consensus 337 ~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~ 416 (773)
T 2xau_A 337 GPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPI 416 (773)
T ss_dssp CCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEEC
T ss_pred CCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccC
Confidence 1134899999999999999999999 9999999999999999999999999996541 11 288
Q ss_pred CHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCcccccCCchhHHHHHHHHHHhcccCCHHHHHHHHH
Q psy15878 299 SLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIK 378 (693)
Q Consensus 299 s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~ 378 (693)
|..+|.||+|||||.+ +|.||.++++. +. ...+.....+.+. ...|...+|.+.++|... +. .
T Consensus 417 S~~s~~QR~GRaGR~~---~G~~~~l~~~~-~~--~~~l~~~~~pEi~----r~~L~~~~L~l~~~gi~~----~~---~ 479 (773)
T 2xau_A 417 SKASAQQRAGRAGRTR---PGKCFRLYTEE-AF--QKELIEQSYPEIL----RSNLSSTVLELKKLGIDD----LV---H 479 (773)
T ss_dssp CHHHHHHHHHGGGSSS---SEEEEESSCHH-HH--HHTSCSSCCCGGG----GSCCHHHHHHHHHTTCCC----GG---G
T ss_pred CHHHHHhhccccCCCC---CCEEEEEecHH-Hh--cccccccCCCccc----cCcHHHHHHHHHHcCCCC----hh---h
Confidence 9999999999999995 89999999765 22 1223222222221 245677788888876431 11 1
Q ss_pred HhhhhhccCchhhhhhhhhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhh
Q psy15878 379 HTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLH 450 (693)
Q Consensus 379 ~t~~~~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~ 450 (693)
..|+.. +..+.+..+++.|.+.|+|+.+ ..+|++|+.++.+|++|..+++++.+...
T Consensus 480 f~~~~~----------p~~~~i~~a~~~L~~lgald~~-----~~lT~lG~~~a~~pl~p~~~~~l~~~~~~ 536 (773)
T 2xau_A 480 FDFMDP----------PAPETMMRALEELNYLACLDDE-----GNLTPLGRLASQFPLDPMLAVMLIGSFEF 536 (773)
T ss_dssp CCCSSC----------CCHHHHHHHHHHHHHTTSBCTT-----SCBCHHHHHHTTSSSCHHHHHHHHHGGGG
T ss_pred ccccCC----------CcHHHHHHHHHHHHHcCCcccC-----CCcChhhhhhccccCCHHHHHHHHhhccc
Confidence 122211 2345678899999999999743 35999999999999999999999987653
No 10
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1e-32 Score=303.20 Aligned_cols=264 Identities=15% Similarity=0.204 Sum_probs=197.8
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|.++++++++...++++..++|+.....+......+++|+|+||+++..++.+ ....+.++++||+||||.+.+.
T Consensus 141 La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~~~~lVlDEah~~~~~ 218 (434)
T 2db3_A 141 LAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR--TFITFEDTRFVVLDEADRMLDM 218 (434)
T ss_dssp HHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT--TSCCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh--CCcccccCCeEEEccHhhhhcc
Confidence 68899999999998889999999998754433333346899999999998766654 2345789999999999999998
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH-hhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST-FIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYAD 158 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~-~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (693)
+++..+..++..+. ..++.|++++|||+++ ...++. |+....+............ +....+.+
T Consensus 219 gf~~~~~~i~~~~~-~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~--i~~~~~~~------------ 283 (434)
T 2db3_A 219 GFSEDMRRIMTHVT-MRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSD--VKQTIYEV------------ 283 (434)
T ss_dssp TTHHHHHHHHHCTT-SCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTT--EEEEEEEC------------
T ss_pred CcHHHHHHHHHhcC-CCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccc--cceEEEEe------------
Confidence 89998888877642 2567899999999984 333332 3322111000000000000 00000000
Q ss_pred cccccCCCCChhhHHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHH
Q psy15878 159 NLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEEC 237 (693)
Q Consensus 159 ~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~ 237 (693)
....+...+.+++. ...++||||+|++.|+.++..|.+.++
T Consensus 284 -----~~~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~--------------------------------- 325 (434)
T 2db3_A 284 -----NKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEF--------------------------------- 325 (434)
T ss_dssp -----CGGGHHHHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTC---------------------------------
T ss_pred -----CcHHHHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCC---------------------------------
Confidence 01123345556665 555699999999999999999987332
Q ss_pred HhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCC
Q psy15878 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQE 317 (693)
Q Consensus 238 ~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~ 317 (693)
.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||.| .
T Consensus 326 ---~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~----p~~~~~y~qriGR~gR~g--~ 396 (434)
T 2db3_A 326 ---PTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDM----PSKIDDYVHRIGRTGRVG--N 396 (434)
T ss_dssp ---CEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSC----CSSHHHHHHHHTTSSCTT--C
T ss_pred ---CEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECC----CCCHHHHHHHhcccccCC--C
Confidence 3899999999999999999999999999999999999999999999999885 779999999999999999 6
Q ss_pred CCcEEEEeccc
Q psy15878 318 SGESIMLCKTM 328 (693)
Q Consensus 318 ~G~~i~l~~~~ 328 (693)
.|.|++++++.
T Consensus 397 ~G~a~~~~~~~ 407 (434)
T 2db3_A 397 NGRATSFFDPE 407 (434)
T ss_dssp CEEEEEEECTT
T ss_pred CCEEEEEEecc
Confidence 89999999854
No 11
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.98 E-value=3.4e-32 Score=297.54 Aligned_cols=270 Identities=17% Similarity=0.213 Sum_probs=196.6
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|.++.+++++...++++..++|+............+++|+|+||+++..++.. ....+.++++||+||+|++.+.
T Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~~~~iViDEah~~~~~ 190 (417)
T 2i4i_A 113 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER--GKIGLDFCKYLVLDEADRMLDM 190 (417)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT--TSBCCTTCCEEEESSHHHHHHT
T ss_pred HHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc--CCcChhhCcEEEEEChhHhhcc
Confidence 57899999999988889999999988654333333346789999999998766554 2335788999999999999887
Q ss_pred CChHHHHHHHHHHhcc-CCCceEEEEcCcCCC-HHHHH-HhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhc
Q psy15878 81 QRGPILECVVSKVLYL-KKSIQIFAMSATIGN-INALS-TFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYA 157 (693)
Q Consensus 81 ~rg~~le~il~~l~~~-~~~~qii~lSATl~n-~~~la-~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (693)
+++..+..++...... ....|+++||||+++ ...+. .|++...+....+.......+. .....
T Consensus 191 ~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~------------ 256 (417)
T 2i4i_A 191 GFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENIT--QKVVW------------ 256 (417)
T ss_dssp TCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEE--EEEEE------------
T ss_pred CcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCce--EEEEE------------
Confidence 8888887776543211 236799999999975 33343 4444321111000000000000 00000
Q ss_pred ccccccCCCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHH
Q psy15878 158 DNLDYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNL 234 (693)
Q Consensus 158 ~~~~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 234 (693)
.....+.+.+.+++. .++++||||++++.++.++..|.+.+
T Consensus 257 -----~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------------------------------- 300 (417)
T 2i4i_A 257 -----VEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG------------------------------- 300 (417)
T ss_dssp -----CCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT-------------------------------
T ss_pred -----eccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC-------------------------------
Confidence 001122344555665 57889999999999999999998732
Q ss_pred HHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCC
Q psy15878 235 EECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTG 314 (693)
Q Consensus 235 ~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g 314 (693)
..+..+||+++.++|..+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+|||||.|
T Consensus 301 -----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~----p~s~~~~~Qr~GR~gR~g 371 (417)
T 2i4i_A 301 -----YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL----PSDIEEYVHRIGRTGRVG 371 (417)
T ss_dssp -----CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSC----CSSHHHHHHHHTTBCC--
T ss_pred -----CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcC----CCCHHHHHHhcCccccCC
Confidence 23999999999999999999999999999999999999999999999999875 779999999999999999
Q ss_pred CCCCCcEEEEecccccHHHH
Q psy15878 315 LQESGESIMLCKTMQDFLRF 334 (693)
Q Consensus 315 ~d~~G~~i~l~~~~~~~~~~ 334 (693)
..|.|++++++. +...+
T Consensus 372 --~~g~~~~~~~~~-~~~~~ 388 (417)
T 2i4i_A 372 --NLGLATSFFNER-NINIT 388 (417)
T ss_dssp --CCEEEEEEECGG-GGGGH
T ss_pred --CCceEEEEEccc-cHHHH
Confidence 679999999887 54433
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=6.4e-31 Score=285.84 Aligned_cols=277 Identities=18% Similarity=0.220 Sum_probs=199.0
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|.++.+++++...++++..+.|+.............++|+|+||+++..++.. ....+.++++||+||+|.+.+.
T Consensus 101 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~ 178 (400)
T 1s2m_A 101 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKMLSR 178 (400)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHSSH
T ss_pred HHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh--CCcccccCCEEEEeCchHhhhh
Confidence 57888999999988889999998887653322233336789999999997665543 2345789999999999988765
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-H-HHHHHhhcCCCccCCCCc---ccceeeEEeCceeeeecCCCCchhh
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-I-NALSTFIEGITYVENSRP---TKHSEYVTVDKRVFQSFDGKSLTEI 155 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~-~~la~~l~~~~~~~~~rp---v~l~~~~~~~~~~~~~~~~~~~~~~ 155 (693)
.++..+..++.. .++..|+++||||++. . +.+..++..+........ ..+..+ +..
T Consensus 179 ~~~~~~~~i~~~---~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--------- 239 (400)
T 1s2m_A 179 DFKTIIEQILSF---LPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQY-------YAF--------- 239 (400)
T ss_dssp HHHHHHHHHHTT---SCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEE-------EEE---------
T ss_pred chHHHHHHHHHh---CCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeE-------EEE---------
Confidence 555555544432 3567899999999974 2 223334432211000000 000000 000
Q ss_pred hcccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchH
Q psy15878 156 YADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTN 233 (693)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (693)
.....+...+..++. .++++||||++++.++.++..|.+.+
T Consensus 240 -------~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------------------------------ 282 (400)
T 1s2m_A 240 -------VEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLG------------------------------ 282 (400)
T ss_dssp -------CCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHT------------------------------
T ss_pred -------echhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcC------------------------------
Confidence 001122334555555 67899999999999999999987632
Q ss_pred HHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCC
Q psy15878 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRT 313 (693)
Q Consensus 234 L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~ 313 (693)
.++.++||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+|||||.
T Consensus 283 ------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~----p~s~~~~~Qr~GR~gR~ 352 (400)
T 1s2m_A 283 ------YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF----PKTAETYLHRIGRSGRF 352 (400)
T ss_dssp ------CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC----CSSHHHHHHHHCBSSCT
T ss_pred ------CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC----CCCHHHHHHhcchhcCC
Confidence 34899999999999999999999999999999999999999999999999875 77999999999999999
Q ss_pred CCCCCCcEEEEecccccHHHHHH---HHhCCCCccccc
Q psy15878 314 GLQESGESIMLCKTMQDFLRFSS---MMNAGPEPISSH 348 (693)
Q Consensus 314 g~d~~G~~i~l~~~~~~~~~~~~---~l~~~~~~i~s~ 348 (693)
| ..|.|++++++. +...+.+ .+..+++++...
T Consensus 353 g--~~g~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 353 G--HLGLAINLINWN-DRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp T--CCEEEEEEECGG-GHHHHHHHHHHHTCCCEECCSS
T ss_pred C--CCceEEEEeccc-hHHHHHHHHHHhCCCccccccc
Confidence 9 689999999888 6655544 344444444433
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=5.9e-31 Score=299.30 Aligned_cols=282 Identities=16% Similarity=0.181 Sum_probs=197.6
Q ss_pred ChhhHHHHHHHHhhh----hCcEEEEeeccCCCCCccccc-cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEeccc
Q psy15878 1 MVHEKYQSLAKAAEE----FKFYLEEYAGVKGQYPPTKRQ-LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFH 75 (693)
Q Consensus 1 L~~e~~~~l~~~~~~----~~~~v~~~~G~~~~~~~~~~~-~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H 75 (693)
||.|+++.++++... .+..+..+.|+.......... ..+++|+|+||+++..++.+. ....++++++||+||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah 236 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEAD 236 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc-cccccccceEEEEeCHH
Confidence 578899999887543 234566777765422222221 247899999999987766553 12356889999999999
Q ss_pred ccCCCCChHHHHHHHHHHhccC----CCceEEEEcCcCCC-HHHHHHhhcCCCc---c-C--CCCcccceeeEEeCceee
Q psy15878 76 MLNEPQRGPILECVVSKVLYLK----KSIQIFAMSATIGN-INALSTFIEGITY---V-E--NSRPTKHSEYVTVDKRVF 144 (693)
Q Consensus 76 ~l~d~~rg~~le~il~~l~~~~----~~~qii~lSATl~n-~~~la~~l~~~~~---~-~--~~rpv~l~~~~~~~~~~~ 144 (693)
++.++++++.++.++..+.... +++|+++||||+++ ...++.++..... . . ...+.... .+. ....
T Consensus 237 ~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~ 313 (563)
T 3i5x_A 237 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE-RID--QSVV 313 (563)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCT-TEE--EEEE
T ss_pred HHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccc-cCc--eEEE
Confidence 9999899999999988876443 37899999999987 4555554432200 0 0 00000000 000 0000
Q ss_pred eecCCCCchhhhcccccccCCCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHH
Q psy15878 145 QSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEA 221 (693)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~ 221 (693)
.... .... .......+...+. .+.++||||+|++.|+.++..|.+....
T Consensus 314 ~~~~-~~~~-----------~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~---------------- 365 (563)
T 3i5x_A 314 ISEK-FANS-----------IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK---------------- 365 (563)
T ss_dssp EESS-TTHH-----------HHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT----------------
T ss_pred ECch-hHhh-----------HHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC----------------
Confidence 0000 0000 0000111222222 6789999999999999999999862000
Q ss_pred HHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHH
Q psy15878 222 LKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLN 301 (693)
Q Consensus 222 l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~ 301 (693)
...+..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++. |.+..
T Consensus 366 -----------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~----p~s~~ 424 (563)
T 3i5x_A 366 -----------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGV----PSELA 424 (563)
T ss_dssp -----------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESC----CSSTT
T ss_pred -----------------CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECC----CCchh
Confidence 134899999999999999999999999999999999999999999999999885 77999
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHH
Q psy15878 302 MYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMM 338 (693)
Q Consensus 302 ~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l 338 (693)
+|.||+|||||.| ..|.|++++.+. +...+..+.
T Consensus 425 ~y~Qr~GRagR~g--~~g~~i~~~~~~-e~~~~~~l~ 458 (563)
T 3i5x_A 425 NYIHRIGRTARSG--KEGSSVLFICKD-ELPFVRELE 458 (563)
T ss_dssp HHHHHHTTSSCTT--CCEEEEEEEEGG-GHHHHHHHH
T ss_pred hhhhhcCccccCC--CCceEEEEEchh-HHHHHHHHH
Confidence 9999999999999 689999999988 777776654
No 14
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=3.5e-31 Score=288.99 Aligned_cols=276 Identities=17% Similarity=0.206 Sum_probs=199.9
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|.++.+++++...++++..+.|+............+++|+|+||+++..+++. ....+.++++||+||+|.+.+.
T Consensus 117 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~--~~~~~~~~~~vViDEah~~~~~ 194 (410)
T 2j0s_A 117 LAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--RSLRTRAIKMLVLDEADEMLNK 194 (410)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh--CCccHhheeEEEEccHHHHHhh
Confidence 57889999999998889999999887653333333335789999999998766654 2345688999999999999887
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhh----cCCCccCC-CCcccceeeEEeCceeeeecCCCCchhh
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI----EGITYVEN-SRPTKHSEYVTVDKRVFQSFDGKSLTEI 155 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l----~~~~~~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 155 (693)
.+...+..++. ..+++.|+++||||+++ .+.+++ ........ ....... .+ .......
T Consensus 195 ~~~~~~~~i~~---~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~--------- 257 (410)
T 2j0s_A 195 GFKEQIYDVYR---YLPPATQVVLISATLPH--EILEMTNKFMTDPIRILVKRDELTLE-GI--KQFFVAV--------- 257 (410)
T ss_dssp TTHHHHHHHHT---TSCTTCEEEEEESCCCH--HHHTTGGGTCSSCEEECCCGGGCSCT-TE--EEEEEEE---------
T ss_pred hhHHHHHHHHH---hCccCceEEEEEcCCCH--HHHHHHHHHcCCCEEEEecCccccCC-Cc--eEEEEEe---------
Confidence 77766655543 34577899999999974 233322 21110000 0000000 00 0000000
Q ss_pred hcccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchH
Q psy15878 156 YADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTN 233 (693)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (693)
.....+.+.+..++. ..+++||||++++.++.++..|.+.+
T Consensus 258 -------~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------------------------------ 300 (410)
T 2j0s_A 258 -------EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN------------------------------ 300 (410)
T ss_dssp -------SSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTT------------------------------
T ss_pred -------CcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCC------------------------------
Confidence 001113345556655 67799999999999999999998732
Q ss_pred HHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCC
Q psy15878 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRT 313 (693)
Q Consensus 234 L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~ 313 (693)
.++..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||.
T Consensus 301 ------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~----p~s~~~~~Qr~GR~gR~ 370 (410)
T 2j0s_A 301 ------FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL----PNNRELYIHRIGRSGRY 370 (410)
T ss_dssp ------CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC----CSSHHHHHHHHTTSSGG
T ss_pred ------CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC----CCCHHHHHHhcccccCC
Confidence 23899999999999999999999999999999999999999999999999875 77999999999999999
Q ss_pred CCCCCCcEEEEecccccHHHH---HHHHhCCCCcc
Q psy15878 314 GLQESGESIMLCKTMQDFLRF---SSMMNAGPEPI 345 (693)
Q Consensus 314 g~d~~G~~i~l~~~~~~~~~~---~~~l~~~~~~i 345 (693)
| ..|.|++++++. +...+ .+++...++++
T Consensus 371 g--~~g~~~~~~~~~-~~~~~~~i~~~~~~~~~~~ 402 (410)
T 2j0s_A 371 G--RKGVAINFVKND-DIRILRDIEQYYSTQIDEM 402 (410)
T ss_dssp G--CCEEEEEEEEGG-GHHHHHHHHHHTTCCCEEC
T ss_pred C--CceEEEEEecHH-HHHHHHHHHHHhCCCceec
Confidence 8 689999999887 65554 44455555443
No 15
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.9e-30 Score=276.74 Aligned_cols=271 Identities=16% Similarity=0.251 Sum_probs=198.5
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|.++.++++....++++..+.|+.......... ..++|+|+||+++..++.. ....+.++++||+||+|.+.+.
T Consensus 86 L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~ 162 (367)
T 1hv8_A 86 LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINR--GTLNLKNVKYFILDEADEMLNM 162 (367)
T ss_dssp HHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH-HTCSEEEECHHHHHHHHHT--TCSCTTSCCEEEEETHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc-CCCCEEEecHHHHHHHHHc--CCcccccCCEEEEeCchHhhhh
Confidence 577888999998877788898888875433222222 5789999999997655543 2345789999999999999877
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCH--HHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNI--NALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYAD 158 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~--~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (693)
.+...+..++.. ..+..++++||||+++. +.+..+++...+.....+..+.... +...
T Consensus 163 ~~~~~~~~~~~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----------- 222 (367)
T 1hv8_A 163 GFIKDVEKILNA---CNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINANIEQSY------VEVN----------- 222 (367)
T ss_dssp TTHHHHHHHHHT---SCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSSSSEEEE------EECC-----------
T ss_pred chHHHHHHHHHh---CCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCCCceEEE------EEeC-----------
Confidence 776666655543 35778999999999752 3334454432211111111111100 0000
Q ss_pred cccccCCCCChhhHHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHH
Q psy15878 159 NLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEEC 237 (693)
Q Consensus 159 ~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~ 237 (693)
...+.+.+..++. .+.++||||++++.++.+++.|.+.+
T Consensus 223 ------~~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~---------------------------------- 262 (367)
T 1hv8_A 223 ------ENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIG---------------------------------- 262 (367)
T ss_dssp ------GGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTT----------------------------------
T ss_pred ------hHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcC----------------------------------
Confidence 1122334555555 78899999999999999999998722
Q ss_pred HhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCC
Q psy15878 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQE 317 (693)
Q Consensus 238 ~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~ 317 (693)
.++..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+|||||.| .
T Consensus 263 --~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~----~~s~~~~~Q~~GR~~R~g--~ 334 (367)
T 1hv8_A 263 --FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL----PQNPESYMHRIGRTGRAG--K 334 (367)
T ss_dssp --CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC----CSCHHHHHHHSTTTCCSS--S
T ss_pred --CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC----CCCHHHhhhcccccccCC--C
Confidence 34899999999999999999999999999999999999999999999999874 789999999999999999 6
Q ss_pred CCcEEEEecccccHHHHH---HHHhCCCC
Q psy15878 318 SGESIMLCKTMQDFLRFS---SMMNAGPE 343 (693)
Q Consensus 318 ~G~~i~l~~~~~~~~~~~---~~l~~~~~ 343 (693)
.|.+++++++. +...+. +.+...++
T Consensus 335 ~g~~~~~~~~~-~~~~~~~i~~~~~~~~~ 362 (367)
T 1hv8_A 335 KGKAISIINRR-EYKKLRYIERAMKLKIK 362 (367)
T ss_dssp CCEEEEEECTT-SHHHHHHHHHHHTCCCC
T ss_pred ccEEEEEEcHH-HHHHHHHHHHHhCCCCc
Confidence 89999999887 665553 34444443
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=1.1e-29 Score=284.74 Aligned_cols=360 Identities=16% Similarity=0.165 Sum_probs=232.6
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCcccc----ccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKR----QLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~----~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
|+.|+++.++. .|+++..++|+......... ..+.++|+|+|||++.. ..+...-...++++|||||+|+
T Consensus 77 L~~q~~~~l~~----~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~--~~~~~~l~~~~~~~vViDEaH~ 150 (523)
T 1oyw_A 77 LMKDQVDQLQA----NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLML--DNFLEHLAHWNPVLLAVDEAHC 150 (523)
T ss_dssp HHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTS--TTHHHHHTTSCEEEEEESSGGG
T ss_pred HHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC--hHHHHHHhhCCCCEEEEeCccc
Confidence 46677777765 47888888876542221111 12568999999998631 1111112237899999999999
Q ss_pred cCCCC--ChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHHhhcCCC---ccCCCCcccceeeEEeCceeeeecCC
Q psy15878 77 LNEPQ--RGPILECVVSKVLYLKKSIQIFAMSATIGN--INALSTFIEGIT---YVENSRPTKHSEYVTVDKRVFQSFDG 149 (693)
Q Consensus 77 l~d~~--rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~~l~~~~---~~~~~rpv~l~~~~~~~~~~~~~~~~ 149 (693)
+++++ +.+.+..+ ..++...++.++++||||+++ ..++.+|++... +...+....+ .+.+.
T Consensus 151 i~~~g~~fr~~~~~l-~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l---------~~~v~-- 218 (523)
T 1oyw_A 151 ISQWGHDFRPEYAAL-GQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI---------RYMLM-- 218 (523)
T ss_dssp GCTTSSCCCHHHHGG-GGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTE---------EEEEE--
T ss_pred cCcCCCccHHHHHHH-HHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCce---------EEEEE--
Confidence 98765 55665543 233333467899999999986 366788886421 1111100000 01000
Q ss_pred CCchhhhcccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccC
Q psy15878 150 KSLTEIYADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEEND 227 (693)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (693)
......+.+.+++. .++++||||+|++.|+.++..|...+.
T Consensus 219 --------------~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~----------------------- 261 (523)
T 1oyw_A 219 --------------EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGI----------------------- 261 (523)
T ss_dssp --------------ECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTC-----------------------
T ss_pred --------------eCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCC-----------------------
Confidence 01122344555555 678999999999999999999987332
Q ss_pred CccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHh
Q psy15878 228 GKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMV 307 (693)
Q Consensus 228 ~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~ 307 (693)
.+..|||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+++. |.|..+|.||+
T Consensus 262 -------------~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~----p~s~~~y~Qr~ 324 (523)
T 1oyw_A 262 -------------SAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI----PRNIESYYQET 324 (523)
T ss_dssp -------------CEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSC----CSSHHHHHHHH
T ss_pred -------------CEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECC----CCCHHHHHHHh
Confidence 3899999999999999999999999999999999999999999999999875 77999999999
Q ss_pred hccCCCCCCCCCcEEEEecccccHHHHHHHHhCCCCccccc---------------------------------------
Q psy15878 308 GRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSH--------------------------------------- 348 (693)
Q Consensus 308 GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~--------------------------------------- 348 (693)
|||||.| .+|.|++++++. +...+..++..+.++....
T Consensus 325 GRaGR~g--~~~~~~l~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~~~~~crr~~l~~~f~e~~~~~c~~cd 401 (523)
T 1oyw_A 325 GRAGRDG--LPAEAMLFYDPA-DMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCD 401 (523)
T ss_dssp TTSCTTS--SCEEEEEEECHH-HHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTCCCCSCCSCBH
T ss_pred ccccCCC--CCceEEEEeCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhccccHhhhhHhhcCCCCCCCCCCCC
Confidence 9999999 689999999877 6555555554322110000
Q ss_pred -----CC---chhHHHHHHHHHH-hcccCCHHHHHHHHHHhhhhh------ccCchhh-hhhhhhhHHHHHHHHHhhcCC
Q psy15878 349 -----MD---PPTLVDLILEVVA-ANLCSSLEDVKTLIKHTLFYQ------LKSPEDQ-QTFLETTLSEIVASLLASKGT 412 (693)
Q Consensus 349 -----l~---~~~l~~~il~~i~-~~~~~~~~~~~~~l~~t~~~~------~~~p~~~-~~~~~~~~~~~~l~~L~~~g~ 412 (693)
.. -......+++++. .|.......+.+.+..+--.. .+.|.+- ........|...++.|...|+
T Consensus 402 ~c~~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 481 (523)
T 1oyw_A 402 ICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGL 481 (523)
T ss_dssp HHHSCCCEEECHHHHHHHHHHHHHTTTCCCHHHHHHHHHTCCCHHHHHHTGGGSTTTTTTTTSCHHHHHHHHHHHHHTTS
T ss_pred CCCCCcccccchHHHHHHHHHHHHhccCcCcchhHHHhcCCCcHhHHhhcccccccccccCCCCHHHHHHHHHHHHHCCC
Confidence 00 0123333444331 222233444444433211000 0111111 113445668899999999999
Q ss_pred eEeec-cCccEEecHHHHHHHHcC
Q psy15878 413 MLTMN-EAGHLSLTSIAKAAVQAG 435 (693)
Q Consensus 413 i~~~~-~~~~~~~T~lG~~~~~~~ 435 (693)
+..+. +.+.+.+|+.|+.+.+..
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~ 505 (523)
T 1oyw_A 482 VTQNIAQHSALQLTEAARPVLRGE 505 (523)
T ss_dssp EEEEGGGTTEEEECGGGHHHHHTS
T ss_pred ceeccCCCCceeeCHHHHHHhcCC
Confidence 98653 234688899887776544
No 17
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=5.7e-31 Score=287.44 Aligned_cols=278 Identities=15% Similarity=0.217 Sum_probs=186.1
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCcccccc-CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQL-NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~-~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
|+.|.++.+++++...+..+..+.|+........... ..++|+|+||+++..++.. ....+.++++||+||+|++.+
T Consensus 120 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~~vViDEah~~~~ 197 (414)
T 3eiq_A 120 LAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--RYLSPKYIKMFVLDEADEMLS 197 (414)
T ss_dssp HHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH--TSSCSTTCCEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccCcEEEEECHHHhhc
Confidence 5788999999999888999988888754332222222 6789999999997665543 233567899999999999887
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH-hhcCCCcc-CCCCcccceeeEEeCceeeeecCCCCchhhh
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST-FIEGITYV-ENSRPTKHSEYVTVDKRVFQSFDGKSLTEIY 156 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~-~l~~~~~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 156 (693)
..++..+..++.+ ..++.|+++||||+++ ...+.. ++...... .......... . ...+.
T Consensus 198 ~~~~~~~~~~~~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~----------- 259 (414)
T 3eiq_A 198 RGFKDQIYDIFQK---LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEG---I-RQFYI----------- 259 (414)
T ss_dssp TTTHHHHHHHHTT---SCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTS---C-CEEEE-----------
T ss_pred cCcHHHHHHHHHh---CCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCC---c-eEEEE-----------
Confidence 7777777666544 3578999999999974 233332 22211100 0000000000 0 00000
Q ss_pred cccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHH
Q psy15878 157 ADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNL 234 (693)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 234 (693)
.......+.+.+..++. .++++||||++++.++.+++.|...+
T Consensus 260 ----~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~------------------------------- 304 (414)
T 3eiq_A 260 ----NVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARD------------------------------- 304 (414)
T ss_dssp ----ECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTT-------------------------------
T ss_pred ----EeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcC-------------------------------
Confidence 00012223455666666 67899999999999999999998732
Q ss_pred HHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCC
Q psy15878 235 EECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTG 314 (693)
Q Consensus 235 ~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g 314 (693)
.++.++||+++.++|..+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+|||||.|
T Consensus 305 -----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~----p~s~~~~~Qr~GR~gR~g 375 (414)
T 3eiq_A 305 -----FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL----PTNRENYIHRIGRGGRFG 375 (414)
T ss_dssp -----CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSC----CSSTHHHHHHSCCC----
T ss_pred -----CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCC----CCCHHHhhhhcCcccCCC
Confidence 34899999999999999999999999999999999999999999999999875 779999999999999998
Q ss_pred CCCCCcEEEEecccccHHHH---HHHHhCCCCcc
Q psy15878 315 LQESGESIMLCKTMQDFLRF---SSMMNAGPEPI 345 (693)
Q Consensus 315 ~d~~G~~i~l~~~~~~~~~~---~~~l~~~~~~i 345 (693)
..|.|++++++. +...+ .+++....+++
T Consensus 376 --~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 406 (414)
T 3eiq_A 376 --RKGVAINMVTEE-DKRTLRDIETFYNTSIEEM 406 (414)
T ss_dssp -----CEEEEECST-HHHHHHHHHHHTTCCCEEC
T ss_pred --CCceEEEEEcHH-HHHHHHHHHHHHcCCcccc
Confidence 689999999987 65554 34445544433
No 18
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=1e-29 Score=275.30 Aligned_cols=262 Identities=16% Similarity=0.201 Sum_probs=186.2
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC-
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE- 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d- 79 (693)
|+.|.++.+++++...++.+..+.|+...... ..+++|+|+||+++..++.. ....+.++++||+||+|.+.+
T Consensus 87 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~ 160 (395)
T 3pey_A 87 LARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRR--KLMQLQKIKIFVLDEADNMLDQ 160 (395)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHT--TCBCCTTCCEEEEETHHHHHHS
T ss_pred HHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHc--CCcccccCCEEEEEChhhhcCc
Confidence 57889999999988888888888776432221 25789999999998766544 233578999999999998875
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHhhcCCCc--cCCCCcccceeeEEeCceeeeecCCCCchhhh
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTFIEGITY--VENSRPTKHSEYVTVDKRVFQSFDGKSLTEIY 156 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~l~~~~~--~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 156 (693)
..+...+..+. ...+++.|+++||||+++ ...+..++..... ............. ..+....
T Consensus 161 ~~~~~~~~~~~---~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------- 225 (395)
T 3pey_A 161 QGLGDQCIRVK---RFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIK----QLYMDCK-------- 225 (395)
T ss_dssp TTHHHHHHHHH---HTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEE----EEEEECS--------
T ss_pred cccHHHHHHHH---HhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccccccccc----EEEEEcC--------
Confidence 33444443332 334577899999999986 3445444432210 0000000000000 0000000
Q ss_pred cccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHH
Q psy15878 157 ADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNL 234 (693)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 234 (693)
....+.+.+..++. .++++||||++++.|+.++..|...+
T Consensus 226 -------~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~------------------------------- 267 (395)
T 3pey_A 226 -------NEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEG------------------------------- 267 (395)
T ss_dssp -------SHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTT-------------------------------
T ss_pred -------chHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcC-------------------------------
Confidence 01112233444444 67899999999999999999998732
Q ss_pred HHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcC--CCccCCHHHHHHHhhccCC
Q psy15878 235 EECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV--GRDFISLNMYKQMVGRAGR 312 (693)
Q Consensus 235 ~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~--g~~~~s~~~~~Qr~GRaGR 312 (693)
..+.++||+++.++|..+++.|++|..+|||||+++++|+|+|++++||+++.+ +..+.+..+|.||+|||||
T Consensus 268 -----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR 342 (395)
T 3pey_A 268 -----HEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGR 342 (395)
T ss_dssp -----CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSC
T ss_pred -----CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhcccccc
Confidence 238999999999999999999999999999999999999999999999998652 1233599999999999999
Q ss_pred CCCCCCCcEEEEeccc
Q psy15878 313 TGLQESGESIMLCKTM 328 (693)
Q Consensus 313 ~g~d~~G~~i~l~~~~ 328 (693)
.| ..|.|++++.+.
T Consensus 343 ~g--~~g~~~~~~~~~ 356 (395)
T 3pey_A 343 FG--RKGVAISFVHDK 356 (395)
T ss_dssp TT--CCEEEEEEECSH
T ss_pred CC--CCceEEEEEech
Confidence 99 689999999876
No 19
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=5.9e-30 Score=291.65 Aligned_cols=283 Identities=17% Similarity=0.194 Sum_probs=196.5
Q ss_pred ChhhHHHHHHHHhhh----hCcEEEEeeccCCCCCccccc-cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEeccc
Q psy15878 1 MVHEKYQSLAKAAEE----FKFYLEEYAGVKGQYPPTKRQ-LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFH 75 (693)
Q Consensus 1 L~~e~~~~l~~~~~~----~~~~v~~~~G~~~~~~~~~~~-~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H 75 (693)
||.|.++.+++++.. ..+.+..+.|+.......... ..+++|+|+||+++..++.+. ....+..+++||+||||
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah 185 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEAD 185 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc-cccccccCCEEEEEChH
Confidence 578888889887542 235566677764322222221 147899999999987666543 12356889999999999
Q ss_pred ccCCCCChHHHHHHHHHHhccC----CCceEEEEcCcCCC-HHHHHHhhcCCC-c--cC---CCCcccceeeEEeCceee
Q psy15878 76 MLNEPQRGPILECVVSKVLYLK----KSIQIFAMSATIGN-INALSTFIEGIT-Y--VE---NSRPTKHSEYVTVDKRVF 144 (693)
Q Consensus 76 ~l~d~~rg~~le~il~~l~~~~----~~~qii~lSATl~n-~~~la~~l~~~~-~--~~---~~rpv~l~~~~~~~~~~~ 144 (693)
++.+++++..++.++..+.... .++|+++||||+++ ...+..++.... . .. ...+.... .+ .....
T Consensus 186 ~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~i--~~~~~ 262 (579)
T 3sqw_A 186 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE-RI--DQSVV 262 (579)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCT-TE--EEEEE
T ss_pred HhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccccc-cc--ceEEE
Confidence 9999899999999988876433 37899999999987 355554432210 0 00 00000000 00 00000
Q ss_pred eecCCCCchhhhcccccccCCCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHH
Q psy15878 145 QSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEA 221 (693)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~ 221 (693)
.... .... .....+.+...+. .+.++||||+|++.|+.++..|.+....
T Consensus 263 ~~~~-~~~~-----------~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~---------------- 314 (579)
T 3sqw_A 263 ISEK-FANS-----------IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK---------------- 314 (579)
T ss_dssp EESS-TTHH-----------HHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT----------------
T ss_pred Eecc-hhhh-----------HHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC----------------
Confidence 0000 0000 0000111222222 5789999999999999999998762000
Q ss_pred HHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHH
Q psy15878 222 LKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLN 301 (693)
Q Consensus 222 l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~ 301 (693)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++. |.+..
T Consensus 315 -----------------~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~----p~s~~ 373 (579)
T 3sqw_A 315 -----------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGV----PSELA 373 (579)
T ss_dssp -----------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESC----CSSTT
T ss_pred -----------------CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCC----CCCHH
Confidence 134899999999999999999999999999999999999999999999999885 77999
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHh
Q psy15878 302 MYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMN 339 (693)
Q Consensus 302 ~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~ 339 (693)
+|.||+|||||.| ..|.|++++.+. +...+..+..
T Consensus 374 ~y~Qr~GRagR~g--~~g~~i~~~~~~-e~~~~~~l~~ 408 (579)
T 3sqw_A 374 NYIHRIGRTARSG--KEGSSVLFICKD-ELPFVRELED 408 (579)
T ss_dssp HHHHHHTTSSCTT--CCEEEEEEEEGG-GHHHHHHHHH
T ss_pred HhhhhccccccCC--CCceEEEEEccc-HHHHHHHHHH
Confidence 9999999999999 689999999988 7776665543
No 20
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=8.6e-30 Score=269.90 Aligned_cols=257 Identities=15% Similarity=0.182 Sum_probs=189.9
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|.++.+++++...+.++..++|+.........+ ..++|+|+||+++..++.. ....+.++++||+||+|++.++
T Consensus 68 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~ 144 (337)
T 2z0m_A 68 LTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATPGRLLDLWSK--GVIDLSSFEIVIIDEADLMFEM 144 (337)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH-TTCSEEEECHHHHHHHHHT--TSCCGGGCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc-CCCCEEEECHHHHHHHHHc--CCcchhhCcEEEEEChHHhhcc
Confidence 578899999999888899999998876433222333 5699999999997665543 2334688999999999999877
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHHhhcCCCccCCC-CcccceeeEEeCceeeeecCCCCchhhhc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN--INALSTFIEGITYVENS-RPTKHSEYVTVDKRVFQSFDGKSLTEIYA 157 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~~l~~~~~~~~~-rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (693)
.+...+..++..+ ....++++||||+++ .+.+..|+......... .+..+... .+.
T Consensus 145 ~~~~~~~~~~~~~---~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~------------ 203 (337)
T 2z0m_A 145 GFIDDIKIILAQT---SNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHK------FVH------------ 203 (337)
T ss_dssp TCHHHHHHHHHHC---TTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEE------EEE------------
T ss_pred ccHHHHHHHHhhC---CcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEE------EEE------------
Confidence 7877777766553 467889999999985 23345555432111000 00000000 000
Q ss_pred ccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHH
Q psy15878 158 DNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLE 235 (693)
Q Consensus 158 ~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 235 (693)
...........+. .++++||||++++.++.++..|..
T Consensus 204 -------~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---------------------------------- 242 (337)
T 2z0m_A 204 -------VKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFDN---------------------------------- 242 (337)
T ss_dssp -------CSSSSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCTT----------------------------------
T ss_pred -------eChHHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhhh----------------------------------
Confidence 0111112223333 788999999999999998876654
Q ss_pred HHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCC
Q psy15878 236 ECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGL 315 (693)
Q Consensus 236 ~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~ 315 (693)
+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+++. |.|..+|.||+|||||.|
T Consensus 243 ------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~----~~s~~~~~Q~~GR~gR~g- 311 (337)
T 2z0m_A 243 ------AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDA----PQDLRTYIHRIGRTGRMG- 311 (337)
T ss_dssp ------EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSC----CSSHHHHHHHHTTBCGGG-
T ss_pred ------hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecC----CCCHHHhhHhcCccccCC-
Confidence 888999999999999999999999999999999999999999999999874 779999999999999998
Q ss_pred CCCCcEEEEecccccHHHHHH
Q psy15878 316 QESGESIMLCKTMQDFLRFSS 336 (693)
Q Consensus 316 d~~G~~i~l~~~~~~~~~~~~ 336 (693)
..|.|++++. . +.....+
T Consensus 312 -~~g~~~~~~~-~-~~~~~~~ 329 (337)
T 2z0m_A 312 -RKGEAITFIL-N-EYWLEKE 329 (337)
T ss_dssp -CCEEEEEEES-S-CHHHHHH
T ss_pred -CCceEEEEEe-C-cHHHHHH
Confidence 6899999998 5 5544443
No 21
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.97 E-value=7.5e-30 Score=289.06 Aligned_cols=271 Identities=17% Similarity=0.211 Sum_probs=193.6
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCcccc------ccCCCcEEEEcccchH---HHHhchhccCCCCcccEEEE
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKR------QLNKKSIYICTIEKGS---KLIGSLIQENRIDEIGLIVI 71 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~------~~~~~~IiV~Tpek~~---~Ll~~l~~~~~l~~i~lvVv 71 (693)
|+.|+++.|+.+ |+++..+.|+......... ....++|+|+|||++. .+++.+.....+.++++|||
T Consensus 96 L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iVi 171 (591)
T 2v1x_A 96 LMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAV 171 (591)
T ss_dssp HHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEE
Confidence 467777777665 7888888887643221110 1257899999999873 33333323334578999999
Q ss_pred ecccccCCCC--ChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHHhhcCCC---ccCCCCcccceeeEEeCceee
Q psy15878 72 DEFHMLNEPQ--RGPILECVVSKVLYLKKSIQIFAMSATIGN--INALSTFIEGIT---YVENSRPTKHSEYVTVDKRVF 144 (693)
Q Consensus 72 DE~H~l~d~~--rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~~l~~~~---~~~~~rpv~l~~~~~~~~~~~ 144 (693)
||||++++++ +.+.+.. +..++...++.++++||||+++ .+++..|++... +...+....+ .|
T Consensus 172 DEAH~is~~g~dfr~~~~~-l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl---------~~ 241 (591)
T 2v1x_A 172 DEVHCCSQWGHDFRPDYKA-LGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNL---------YY 241 (591)
T ss_dssp ETGGGGSTTCTTCCGGGGG-GGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTE---------EE
T ss_pred ECcccccccccccHHHHHH-HHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCccc---------EE
Confidence 9999999766 5555544 2223333567899999999986 366777876531 1111111111 11
Q ss_pred eecCCCCchhhhcccccccCCCCChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHH
Q psy15878 145 QSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEA 221 (693)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~ 221 (693)
.+...... .....+.+.+++. .++++||||+|++.|+.++..|...+
T Consensus 242 ~v~~~~~~------------~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g------------------ 291 (591)
T 2v1x_A 242 EVRQKPSN------------TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG------------------ 291 (591)
T ss_dssp EEEECCSS------------HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT------------------
T ss_pred EEEeCCCc------------HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC------------------
Confidence 11100000 0011233445554 57899999999999999999998733
Q ss_pred HHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHH
Q psy15878 222 LKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLN 301 (693)
Q Consensus 222 l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~ 301 (693)
.++.++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+++. |.|..
T Consensus 292 ------------------~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~----p~s~~ 349 (591)
T 2v1x_A 292 ------------------IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM----SKSME 349 (591)
T ss_dssp ------------------CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC----CSSHH
T ss_pred ------------------CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCC----CCCHH
Confidence 23999999999999999999999999999999999999999999999999885 77999
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHhC
Q psy15878 302 MYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNA 340 (693)
Q Consensus 302 ~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~~ 340 (693)
+|.||+|||||.| .+|.|++++... +...+..++..
T Consensus 350 ~y~Qr~GRaGR~G--~~g~~i~l~~~~-D~~~~~~~~~~ 385 (591)
T 2v1x_A 350 NYYQESGRAGRDD--MKADCILYYGFG-DIFRISSMVVM 385 (591)
T ss_dssp HHHHHHTTSCTTS--SCEEEEEEECHH-HHHHHHHHTTT
T ss_pred HHHHHhccCCcCC--CCceEEEEEChH-HHHHHHHHHhh
Confidence 9999999999998 689999999887 76666666543
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=1.5e-29 Score=273.97 Aligned_cols=258 Identities=16% Similarity=0.183 Sum_probs=186.7
Q ss_pred ChhhHHHHHHHHhhhh-CcEEEEeeccCCCCCccccc-cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccC
Q psy15878 1 MVHEKYQSLAKAAEEF-KFYLEEYAGVKGQYPPTKRQ-LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLN 78 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~-~~~v~~~~G~~~~~~~~~~~-~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~ 78 (693)
|+.|.+++++++.... ++++..+.|+.......... ...++|+|+||+++..++.. ....+.++++||+||+|++.
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~vViDEaH~~~ 165 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKML 165 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCSEEEECSHHHHT
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCccccccCEEEEeCHHHHh
Confidence 5678888888887665 78999999876432222211 14579999999998766554 23457899999999999987
Q ss_pred CC-CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHH-HHHhhcCCCcc--CC-CCc--ccceeeEEeCceeeeecCCC
Q psy15878 79 EP-QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INA-LSTFIEGITYV--EN-SRP--TKHSEYVTVDKRVFQSFDGK 150 (693)
Q Consensus 79 d~-~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~-la~~l~~~~~~--~~-~rp--v~l~~~~~~~~~~~~~~~~~ 150 (693)
++ .+...+..++ .......|+++||||+++ ... +..++...... .. ..+ ..+...+ ..
T Consensus 166 ~~~~~~~~~~~~~---~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----- 231 (391)
T 1xti_A 166 EQLDMRRDVQEIF---RMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY------VK----- 231 (391)
T ss_dssp SSHHHHHHHHHHH---HTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEE------EE-----
T ss_pred hccchHHHHHHHH---hhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEE------EE-----
Confidence 63 2333333332 334568899999999986 333 33444332100 00 000 0000000 00
Q ss_pred CchhhhcccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCC
Q psy15878 151 SLTEIYADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDG 228 (693)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 228 (693)
.....+...+.+++. .++++||||++++.++.++..|...+.
T Consensus 232 ------------~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~------------------------ 275 (391)
T 1xti_A 232 ------------LKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF------------------------ 275 (391)
T ss_dssp ------------CCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTC------------------------
T ss_pred ------------cCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCC------------------------
Confidence 001122344555555 778999999999999999999987332
Q ss_pred ccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhh
Q psy15878 229 KLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVG 308 (693)
Q Consensus 229 ~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~G 308 (693)
.+..+||+++.++|..+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+|
T Consensus 276 ------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~----p~s~~~~~Qr~G 339 (391)
T 1xti_A 276 ------------PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM----PEDSDTYLHRVA 339 (391)
T ss_dssp ------------CEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC----CSSHHHHHHHHC
T ss_pred ------------cEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC----CCCHHHHHHhcc
Confidence 3889999999999999999999999999999999999999999999999874 779999999999
Q ss_pred ccCCCCCCCCCcEEEEeccc
Q psy15878 309 RAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 309 RaGR~g~d~~G~~i~l~~~~ 328 (693)
||||.| ..|.|++++.+.
T Consensus 340 R~~R~g--~~g~~~~~~~~~ 357 (391)
T 1xti_A 340 RAGRFG--TKGLAITFVSDE 357 (391)
T ss_dssp BCSSSC--CCCEEEEEECSH
T ss_pred cccCCC--CceEEEEEEccc
Confidence 999998 689999999876
No 23
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=1.9e-29 Score=275.10 Aligned_cols=265 Identities=15% Similarity=0.176 Sum_probs=183.3
Q ss_pred ChhhHHHHHHHHhhhh-CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEF-KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
|+.|.++++++++... ++.+....|+....... ...++|+|+||+++..++.+. ....+.++++||+||+|++.+
T Consensus 107 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~~iViDEah~~~~ 182 (412)
T 3fht_A 107 LALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIA 182 (412)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTS-CSSCGGGCCEEEEETHHHHHS
T ss_pred HHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhc-CCcChhhCcEEEEeCHHHHhh
Confidence 5778888888887653 67777777664432222 256899999999976555431 223458999999999998875
Q ss_pred -CCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH-hhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhh
Q psy15878 80 -PQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST-FIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIY 156 (693)
Q Consensus 80 -~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~-~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 156 (693)
..+...+..+.. ...++.|+++||||+++ ...+.. ++....+............+. ...... .
T Consensus 183 ~~~~~~~~~~~~~---~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~-------- 248 (412)
T 3fht_A 183 TQGHQDQSIRIQR---MLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIK--QYYVLC-S-------- 248 (412)
T ss_dssp TTTTHHHHHHHHH---TSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEE--EEEEEC-S--------
T ss_pred cCCcHHHHHHHHh---hCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCce--EEEEEc-C--------
Confidence 345544444333 33577899999999985 333333 332221110000000000000 000000 0
Q ss_pred cccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHH
Q psy15878 157 ADNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNL 234 (693)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 234 (693)
....+...+..++. .++++||||++++.|+.++..|.+.+
T Consensus 249 -------~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~------------------------------- 290 (412)
T 3fht_A 249 -------SRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG------------------------------- 290 (412)
T ss_dssp -------SHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTT-------------------------------
T ss_pred -------ChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCC-------------------------------
Confidence 01112334455554 77899999999999999999998732
Q ss_pred HHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCC--ccCCHHHHHHHhhccCC
Q psy15878 235 EECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGR--DFISLNMYKQMVGRAGR 312 (693)
Q Consensus 235 ~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~--~~~s~~~~~Qr~GRaGR 312 (693)
.++.++||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+++.+.. ...+..+|.||+|||||
T Consensus 291 -----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR 365 (412)
T 3fht_A 291 -----HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGR 365 (412)
T ss_dssp -----CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSC
T ss_pred -----CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccC
Confidence 34999999999999999999999999999999999999999999999999875211 11588999999999999
Q ss_pred CCCCCCCcEEEEeccc
Q psy15878 313 TGLQESGESIMLCKTM 328 (693)
Q Consensus 313 ~g~d~~G~~i~l~~~~ 328 (693)
.| ..|.|++++++.
T Consensus 366 ~g--~~g~~~~~~~~~ 379 (412)
T 3fht_A 366 FG--KRGLAVNMVDSK 379 (412)
T ss_dssp TT--CCEEEEEEECSH
T ss_pred CC--CCceEEEEEcCh
Confidence 98 689999999876
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=6e-31 Score=285.16 Aligned_cols=278 Identities=18% Similarity=0.246 Sum_probs=85.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|.++.+++++...++++..++|+......... ..+++|+|+||+++...+.. ....+.++++||+||+|++.+.
T Consensus 101 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~vIiDEah~~~~~ 177 (394)
T 1fuu_A 101 LALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG-LRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSS 177 (394)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHH-HHHCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhh-cCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEEChHHhhCC
Confidence 57788899999988889999999987653222222 24789999999997655543 2345688999999999998877
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC--HHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN--INALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYAD 158 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n--~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (693)
.+...+..++..+ .+..|+++||||+++ .+.+..|+.... .+. ........ . ... ..
T Consensus 178 ~~~~~~~~~~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--------~~~----~~~~~~~~--~-~~~---~~ 236 (394)
T 1fuu_A 178 GFKEQIYQIFTLL---PPTTQVVLLSATMPNDVLEVTTKFMRNPV--------RIL----VKKDELTL--E-GIK---QF 236 (394)
T ss_dssp TCHHHHHHHHHHS---CTTCEEEEECSSCCHHHHHHHHHHCCSCE--------EEE----ECC-----------------
T ss_pred CcHHHHHHHHHhC---CCCceEEEEEEecCHHHHHHHHHhcCCCe--------EEE----ecCccccC--C-Cce---EE
Confidence 7877777766554 567899999999985 223334543321 100 00000000 0 000 00
Q ss_pred cccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHH
Q psy15878 159 NLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEE 236 (693)
Q Consensus 159 ~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 236 (693)
.........+.+.+..++. .++++||||++++.++.++..|.+.+
T Consensus 237 ~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~--------------------------------- 283 (394)
T 1fuu_A 237 YVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK--------------------------------- 283 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcC---------------------------------
Confidence 0000001112233444444 67899999999999999999887622
Q ss_pred HHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCC
Q psy15878 237 CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQ 316 (693)
Q Consensus 237 ~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d 316 (693)
.++..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+|||||.|
T Consensus 284 ---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~----p~s~~~~~Qr~GR~~R~g-- 354 (394)
T 1fuu_A 284 ---FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL----PANKENYIHRIGRGGRFG-- 354 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCC----CCCHHHHHHHcCcccCCC--
Confidence 23889999999999999999999999999999999999999999999999874 778999999999999998
Q ss_pred CCCcEEEEecccccHHHH---HHHHhCCCCcc
Q psy15878 317 ESGESIMLCKTMQDFLRF---SSMMNAGPEPI 345 (693)
Q Consensus 317 ~~G~~i~l~~~~~~~~~~---~~~l~~~~~~i 345 (693)
..|.|++++++. +...+ .+++..+++++
T Consensus 355 ~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 385 (394)
T 1fuu_A 355 RKGVAINFVTNE-DVGAMRELEKFYSTQIEEL 385 (394)
T ss_dssp --------------------------------
T ss_pred CCceEEEEEchh-HHHHHHHHHHHhCCccccc
Confidence 689999999887 54443 33344444433
No 25
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=1.1e-28 Score=269.61 Aligned_cols=262 Identities=16% Similarity=0.118 Sum_probs=181.9
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCC---CCcccccc-CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQ---YPPTKRQL-NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~---~~~~~~~~-~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
||.|+++.+++++. .++++..++|+... ........ +.++|+|+||+++..+++. ..+.++++||+||+|+
T Consensus 76 L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH~ 150 (414)
T 3oiy_A 76 LVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDA 150 (414)
T ss_dssp HHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHHH
T ss_pred HHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChHh
Confidence 57899999999887 89999999998653 11112222 3499999999997544442 3456899999999998
Q ss_pred cCCC-----------CChHH-HHHHHHHHh------ccC--CCceEEEEcCc-CCCH---HHHHHhhcCCCccCCCCccc
Q psy15878 77 LNEP-----------QRGPI-LECVVSKVL------YLK--KSIQIFAMSAT-IGNI---NALSTFIEGITYVENSRPTK 132 (693)
Q Consensus 77 l~d~-----------~rg~~-le~il~~l~------~~~--~~~qii~lSAT-l~n~---~~la~~l~~~~~~~~~rpv~ 132 (693)
+.++ ++... +..++..+. ... ++.|++++||| .++. .-+..+++.........+..
T Consensus 151 ~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (414)
T 3oiy_A 151 VLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARN 230 (414)
T ss_dssp HHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCS
T ss_pred hhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCcccccccc
Confidence 7532 33344 666666553 111 67899999999 4431 22233443221111111111
Q ss_pred ceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccc
Q psy15878 133 HSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYK 211 (693)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~ 211 (693)
+...+ + ...+.+.+.+++. .++++||||++++.|+.++..|...+.
T Consensus 231 i~~~~------~--------------------~~~~~~~l~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~------- 277 (414)
T 3oiy_A 231 ITHVR------I--------------------SSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKF------- 277 (414)
T ss_dssp EEEEE------E--------------------SSCCHHHHHHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTC-------
T ss_pred chhee------e--------------------ccCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCC-------
Confidence 11100 0 1123455666666 578999999999999999999987332
Q ss_pred hhhHHHHHHHHHhccCCccchHHHHHHhhceE-EEcCCCCHHHHHHHHHHHhCCCCeEEEe----cchhhcccCCCC-cE
Q psy15878 212 KQEKEDLIEALKEENDGKLSTNLEECILYGVA-YHHADLTAGERRLIEEAYLAGTLQIICC----TSTLAAGVNLPA-QR 285 (693)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~-~~h~~l~~~eR~~ve~~f~~g~i~VLva----T~~l~~Gvnlp~-~~ 285 (693)
.+. .+||. +|+ ++.|++|.++|||| |+++++|+|+|+ ++
T Consensus 278 -----------------------------~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~ 322 (414)
T 3oiy_A 278 -----------------------------NVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIK 322 (414)
T ss_dssp -----------------------------CEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCC
T ss_pred -----------------------------ceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccC
Confidence 266 78884 444 99999999999999 999999999999 99
Q ss_pred EEEecCcCCCcc--CCHHHHHHHhhccCCCCCC--CCCcEEEEecccccHHHHHHHHh
Q psy15878 286 VIIRDSYVGRDF--ISLNMYKQMVGRAGRTGLQ--ESGESIMLCKTMQDFLRFSSMMN 339 (693)
Q Consensus 286 vVI~~~~~g~~~--~s~~~~~Qr~GRaGR~g~d--~~G~~i~l~~~~~~~~~~~~~l~ 339 (693)
+||+++. | .+..+|.||+|||||.|.+ ..|.+++++.+......+++++.
T Consensus 323 ~VI~~~~----p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 323 YVIFWGT----PSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 376 (414)
T ss_dssp EEEEESC----CTTTCHHHHHHHHGGGCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred EEEEECC----CCCCCHHHHHHHhCccccCCCCCCcceEEEEEEccHHHHHHHHHHhc
Confidence 9999875 6 7999999999999999865 58999999943312234455555
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.8e-29 Score=279.28 Aligned_cols=282 Identities=15% Similarity=0.164 Sum_probs=170.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC-
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE- 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d- 79 (693)
|+.|.++++++++...++.+....|+.... ..+ ..++|+|+||+++..++.. ....+.++++||+||+|.+.+
T Consensus 201 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~Ivv~T~~~l~~~l~~--~~~~~~~~~lIIiDEaH~~~~~ 274 (508)
T 3fho_A 201 LARQIMDVVTEMGKYTEVKTAFGIKDSVPK---GAK-IDAQIVIGTPGTVMDLMKR--RQLDARDIKVFVLDEADNMLDQ 274 (508)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEC-------------C-CCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEECCHHHHTTC
T ss_pred HHHHHHHHHHHhCCccCeeEEEEeCCcccc---ccc-CCCCEEEECHHHHHHHHHc--CCccccCCCEEEEechhhhccc
Confidence 578899999999877777665555443221 112 4789999999997655543 233578999999999999886
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcc
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYAD 158 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (693)
..+...+..+...+ .++.|+|+||||+++ .+.+..++................ ..........
T Consensus 275 ~~~~~~~~~i~~~~---~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~------------ 338 (508)
T 3fho_A 275 QGLGDQSMRIKHLL---PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSV-EGIKQLYMDC------------ 338 (508)
T ss_dssp --CHHHHHHHHHHS---CTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC------------
T ss_pred CCcHHHHHHHHHhC---CcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCc-ccceEEEEEC------------
Confidence 34566555554443 568899999999987 566666554321110000000000 0000000000
Q ss_pred cccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHH
Q psy15878 159 NLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEE 236 (693)
Q Consensus 159 ~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 236 (693)
.....+...+..++. .++++||||++++.|+.++..|.+.+
T Consensus 339 ----~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~--------------------------------- 381 (508)
T 3fho_A 339 ----QSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADG--------------------------------- 381 (508)
T ss_dssp ------CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTT---------------------------------
T ss_pred ----CchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCC---------------------------------
Confidence 001112233445554 67899999999999999999997722
Q ss_pred HHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCC--CccCCHHHHHHHhhccCCCC
Q psy15878 237 CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVG--RDFISLNMYKQMVGRAGRTG 314 (693)
Q Consensus 237 ~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g--~~~~s~~~~~Qr~GRaGR~g 314 (693)
.++.+|||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+++.+. ....+..+|.||+|||||.|
T Consensus 382 ---~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g 458 (508)
T 3fho_A 382 ---HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFG 458 (508)
T ss_dssp ---CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC---
T ss_pred ---CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCC
Confidence 3489999999999999999999999999999999999999999999999876421 01168899999999999999
Q ss_pred CCCCCcEEEEeccccc---HHHHHHHHhCCCCccc
Q psy15878 315 LQESGESIMLCKTMQD---FLRFSSMMNAGPEPIS 346 (693)
Q Consensus 315 ~d~~G~~i~l~~~~~~---~~~~~~~l~~~~~~i~ 346 (693)
..|.|++++.+..+ ...+++++...++++.
T Consensus 459 --~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~ 491 (508)
T 3fho_A 459 --RVGVSINFVHDKKSWEEMNAIQEYFQRPITRVP 491 (508)
T ss_dssp ----CEEEEEECTTTSSSSHHHHHHHSCCCCC---
T ss_pred --CCcEEEEEEeChHHHHHHHHHHHHHCCCcccCC
Confidence 68999999975422 4455666665555443
No 27
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.95 E-value=2.7e-29 Score=279.88 Aligned_cols=266 Identities=16% Similarity=0.160 Sum_probs=74.3
Q ss_pred ChhhHHHHHHHHhhhh-CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEF-KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
|+.|.++.+++++... ++.+....|+....... ...++|+|+||+++..++.+. ....+.++++||+||+|.+.+
T Consensus 174 La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~~iViDEah~~~~ 249 (479)
T 3fmp_B 174 LALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIA 249 (479)
T ss_dssp HHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTS-CCCCGGGCCEEEECCHHHHHT
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhc-CCcCcccCCEEEEECHHHHhh
Confidence 5788888888887643 56676666654322211 256799999999976555431 123458999999999998875
Q ss_pred C-CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhc
Q psy15878 80 P-QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYA 157 (693)
Q Consensus 80 ~-~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (693)
. .+...+..+ ++....++|++++|||+++ ...++...... +. .+........ ......
T Consensus 250 ~~~~~~~~~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~---------~~--~i~~~~~~~~------~~~~~~ 309 (479)
T 3fmp_B 250 TQGHQDQSIRI---QRMLPRNCQMLLFSATFEDSVWKFAQKVVPD---------PN--VIKLKREEET------LDTIKQ 309 (479)
T ss_dssp STTHHHHHHHH---HTTSCTTSEEEEEESCCCHHHHHHHHHHSSS---------EE--EEEEC-----------------
T ss_pred cCCcHHHHHHH---HhhCCccceEEEEeCCCCHHHHHHHHHHcCC---------Ce--EEeccccccC------cCCceE
Confidence 3 333333322 2334678999999999986 33444332111 10 0000000000 000000
Q ss_pred ccccccCCCCChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHH
Q psy15878 158 DNLDYSLTGSGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLE 235 (693)
Q Consensus 158 ~~~~~~~~~~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 235 (693)
.-........+...+..++. ..+++||||++++.|+.++..|...+
T Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~-------------------------------- 357 (479)
T 3fmp_B 310 YYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG-------------------------------- 357 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCC--------------------------------
Confidence 00000001223334444444 67899999999999999999887621
Q ss_pred HHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCC--ccCCHHHHHHHhhccCCC
Q psy15878 236 ECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGR--DFISLNMYKQMVGRAGRT 313 (693)
Q Consensus 236 ~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~--~~~s~~~~~Qr~GRaGR~ 313 (693)
.++.++||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+++.+.. ...+..+|.||+|||||.
T Consensus 358 ----~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~ 433 (479)
T 3fmp_B 358 ----HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 433 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccC
Confidence 34899999999999999999999999999999999999999999999999875211 115778999999999999
Q ss_pred CCCCCCcEEEEeccc
Q psy15878 314 GLQESGESIMLCKTM 328 (693)
Q Consensus 314 g~d~~G~~i~l~~~~ 328 (693)
| ..|.|++++++.
T Consensus 434 g--~~G~~i~~~~~~ 446 (479)
T 3fmp_B 434 G--KRGLAVNMVDSK 446 (479)
T ss_dssp ---------------
T ss_pred C--CCceEEEEEcCc
Confidence 8 689999999876
No 28
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.95 E-value=7.9e-28 Score=272.84 Aligned_cols=291 Identities=13% Similarity=0.182 Sum_probs=143.1
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccC-CCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQEN-RIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~-~l~~i~lvVvDE~H~l~d 79 (693)
|+.|.++.|++++...++++..++|+............+++|+|+||+++..++.. ... .+.++++||+||||++.+
T Consensus 67 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~ 144 (556)
T 4a2p_A 67 VYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTG 144 (556)
T ss_dssp HHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHS--SSCCCSTTCSEEEEETGGGCST
T ss_pred HHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHh--CcccccccCCEEEEECCcccCC
Confidence 57889999999998889999999998765554444446799999999997665543 222 578999999999999986
Q ss_pred CCChHHHHHHHHHHhc-----cCCCceEEEEcCcCC--CHHHHHH----------hhcCCCccCCC-C--------cccc
Q psy15878 80 PQRGPILECVVSKVLY-----LKKSIQIFAMSATIG--NINALST----------FIEGITYVENS-R--------PTKH 133 (693)
Q Consensus 80 ~~rg~~le~il~~l~~-----~~~~~qii~lSATl~--n~~~la~----------~l~~~~~~~~~-r--------pv~l 133 (693)
+. + +..++.++.. ..+.+|+++||||++ |..++.+ .++...+.... . +.+.
T Consensus 145 ~~--~-~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 221 (556)
T 4a2p_A 145 NH--P-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPE 221 (556)
T ss_dssp TS--H-HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCC
T ss_pred cc--h-HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCc
Confidence 54 2 4444333321 145689999999994 3333333 33322111100 0 1111
Q ss_pred eeeEEeCceeee----------------------------ecC--CCCch---hhhc-----------------------
Q psy15878 134 SEYVTVDKRVFQ----------------------------SFD--GKSLT---EIYA----------------------- 157 (693)
Q Consensus 134 ~~~~~~~~~~~~----------------------------~~~--~~~~~---~~~~----------------------- 157 (693)
............ ... .+... ....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (556)
T 4a2p_A 222 IDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRAL 301 (556)
T ss_dssp EEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHH
T ss_pred eEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 111111000000 000 00000 0000
Q ss_pred -------------------------------------------------------------ccccccCCCCChhhHHHHH
Q psy15878 158 -------------------------------------------------------------DNLDYSLTGSGPDAVLHLV 176 (693)
Q Consensus 158 -------------------------------------------------------------~~~~~~~~~~~~~~l~~l~ 176 (693)
..........+...+.+++
T Consensus 302 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l 381 (556)
T 4a2p_A 302 FICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCIL 381 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHH
Confidence 0000000122333344444
Q ss_pred h------cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCC
Q psy15878 177 Q------GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLT 250 (693)
Q Consensus 177 ~------~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~ 250 (693)
. ++.++||||+++..++.++..|.+.... ..+. .. .+...+...+||+|+
T Consensus 382 ~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~--~~~~-------------------~~---~~~g~~~~~~~~~~~ 437 (556)
T 4a2p_A 382 DDAYRYNPQTRTLLFAKTRALVSALKKCMEENPIL--NYIK-------------------PG---VLMGRGRRDQTTGMT 437 (556)
T ss_dssp HHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGG--GSCC-------------------EE---C--------------
T ss_pred HHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCc--ceee-------------------ee---EEEccCCcccccccC
Confidence 3 5789999999999999999999873100 0000 00 011234667899999
Q ss_pred HHHHHHHHHHHhC-CCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 251 AGERRLIEEAYLA-GTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 251 ~~eR~~ve~~f~~-g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
.++|..+++.|++ |.++|||||+++++|+|+|++++||+++. |.++.+|.||+|| ||.+ .|.+++++.+.
T Consensus 438 ~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~----p~s~~~~~Qr~GR-gR~~---~g~~~~l~~~~ 508 (556)
T 4a2p_A 438 LPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY----SGNVTKMIQVRGR-GRAA---GSKCILVTSKT 508 (556)
T ss_dssp ----------------CCEEEEEC-----------CEEEEETC----CSCHHHHHHC------------CCEEEEESCH
T ss_pred HHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC----CCCHHHHHHhcCC-CCCC---CceEEEEEeCc
Confidence 9999999999999 99999999999999999999999999985 7899999999999 9986 89999999877
No 29
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.94 E-value=3.1e-26 Score=261.03 Aligned_cols=259 Identities=21% Similarity=0.235 Sum_probs=188.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|+++.++.. |++|..++|+........ -+..+++++|+|.+. ....+++||+||+|++.+.
T Consensus 191 LA~Qi~~~l~~~----g~~v~lltG~~~~iv~Tp--Gr~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~ 254 (677)
T 3rc3_A 191 LAHEIFEKSNAA----GVPCDLVTGEERVTVQPN--GKQASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDP 254 (677)
T ss_dssp HHHHHHHHHHHT----TCCEEEECSSCEECCSTT--CCCCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCT
T ss_pred HHHHHHHHHHhc----CCcEEEEECCeeEEecCC--CcccceeEecHhHhh----------hcccCCEEEEecceecCCc
Confidence 577888887654 788989998754321110 134789999998632 3478899999999999998
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCcc-CCCCcccceeeEEeCceeeeecCCCCchhhhccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYV-ENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADN 159 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (693)
.||..++.++..+. ....+++++|||.+....+..+.+..... ...++.++.. . .
T Consensus 255 ~~g~~~~~~l~~l~--~~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~l~~---------~---~---------- 310 (677)
T 3rc3_A 255 ARGWAWTRALLGLC--AEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISV---------L---D---------- 310 (677)
T ss_dssp TTHHHHHHHHHHCC--EEEEEEEECGGGHHHHHHHHHHHTCCEEEEECCCSSCEEE---------C---S----------
T ss_pred cchHHHHHHHHccC--ccceEEEeccchHHHHHHHHHhcCCceEEEEeeecchHHH---------H---H----------
Confidence 99999998888764 36789999999987677777666443211 1111111110 0 0
Q ss_pred ccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHh
Q psy15878 160 LDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECIL 239 (693)
Q Consensus 160 ~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~ 239 (693)
.. +..+.......+|||+|++.|+.++..|.+.+
T Consensus 311 -------~~---l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g------------------------------------ 344 (677)
T 3rc3_A 311 -------HA---LESLDNLRPGDCIVCFSKNDIYSVSRQIEIRG------------------------------------ 344 (677)
T ss_dssp -------SC---CCSGGGCCTTEEEECSSHHHHHHHHHHHHHTT------------------------------------
T ss_pred -------HH---HHHHHhcCCCCEEEEcCHHHHHHHHHHHHhcC------------------------------------
Confidence 00 00011123445899999999999999998722
Q ss_pred hceEEEcCCCCHHHHHHHHHHHhC--CCCeEEEecchhhcccCCCCcEEEEecCcC-------C---CccCCHHHHHHHh
Q psy15878 240 YGVAYHHADLTAGERRLIEEAYLA--GTLQIICCTSTLAAGVNLPAQRVIIRDSYV-------G---RDFISLNMYKQMV 307 (693)
Q Consensus 240 ~gv~~~h~~l~~~eR~~ve~~f~~--g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~-------g---~~~~s~~~~~Qr~ 307 (693)
.++++|||+|++++|..+++.|++ |.++|||||+++++|||+ .++.||+++.. | ..|+|.++|.||+
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIA 423 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHH
T ss_pred CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHh
Confidence 359999999999999999999999 999999999999999999 67777776542 2 1389999999999
Q ss_pred hccCCCCCC-CCCcEEEEecccccHHHHHHHHhCCCCccccc
Q psy15878 308 GRAGRTGLQ-ESGESIMLCKTMQDFLRFSSMMNAGPEPISSH 348 (693)
Q Consensus 308 GRaGR~g~d-~~G~~i~l~~~~~~~~~~~~~l~~~~~~i~s~ 348 (693)
|||||.|.+ ..|.|++++.. +...+.+++....+++.+.
T Consensus 424 GRAGR~g~~g~~G~v~~l~~~--d~~~~~~~~~~~~~~i~~~ 463 (677)
T 3rc3_A 424 GRAGRFSSRFKEGEVTTMNHE--DLSLLKEILKRPVDPIRAA 463 (677)
T ss_dssp TTBTCTTSSCSSEEEEESSTT--HHHHHHHHHHSCCCCCCCE
T ss_pred cCCCCCCCCCCCEEEEEEecc--hHHHHHHHHhcCcchhhhc
Confidence 999999965 35777766544 4557788888888787773
No 30
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.94 E-value=3e-27 Score=267.89 Aligned_cols=288 Identities=14% Similarity=0.161 Sum_probs=166.4
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccC-CCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQEN-RIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~-~l~~i~lvVvDE~H~l~d 79 (693)
|+.|.++.|++++...++++..++|+............+++|+|+||+++..++.. ... .+.++++||+||||++.+
T Consensus 64 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~ 141 (555)
T 3tbk_A 64 VYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN--GAIPSLSVFTLMIFDECHNTSK 141 (555)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHT--SSSCCGGGCSEEEETTGGGCST
T ss_pred HHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhc--CcccccccCCEEEEECccccCC
Confidence 57889999999998889999999998754444344446799999999997655543 222 578899999999999986
Q ss_pred CCChHHHHHHHHHHhcc------CCCceEEEEcCcCCCH------------HHHHHhhcCCCccCC---------CCccc
Q psy15878 80 PQRGPILECVVSKVLYL------KKSIQIFAMSATIGNI------------NALSTFIEGITYVEN---------SRPTK 132 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~------~~~~qii~lSATl~n~------------~~la~~l~~~~~~~~---------~rpv~ 132 (693)
.. + +..++.++... .+.+|+++||||+++. ..+..+++...+... +.+.+
T Consensus 142 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 218 (555)
T 3tbk_A 142 NH--P-YNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKP 218 (555)
T ss_dssp TC--H-HHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCC
T ss_pred cc--h-HHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCC
Confidence 43 2 44444333221 2567999999999541 134455554322111 11111
Q ss_pred ceeeEEeCceeee-----------------------------ecCC--CCch---hhhcc--------------------
Q psy15878 133 HSEYVTVDKRVFQ-----------------------------SFDG--KSLT---EIYAD-------------------- 158 (693)
Q Consensus 133 l~~~~~~~~~~~~-----------------------------~~~~--~~~~---~~~~~-------------------- 158 (693)
............. .... +... ....+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (555)
T 3tbk_A 219 QKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCK 298 (555)
T ss_dssp CEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHH
T ss_pred ceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHH
Confidence 1111111100000 0000 0000 00000
Q ss_pred --------------------------------c--------------------------------ccccCCCCChhhHHH
Q psy15878 159 --------------------------------N--------------------------------LDYSLTGSGPDAVLH 174 (693)
Q Consensus 159 --------------------------------~--------------------------------~~~~~~~~~~~~l~~ 174 (693)
. ........+...+.+
T Consensus 299 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 378 (555)
T 3tbk_A 299 ALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYL 378 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHH
Confidence 0 000001223334444
Q ss_pred HHh------cCCceEEEeCChHHHHHHHHHhhhccCC---CCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEE
Q psy15878 175 LVQ------GNLMVLIFCSSKIACSNLALRLQFDRFP---GTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYH 245 (693)
Q Consensus 175 l~~------~~~~vLVF~~sr~~~e~la~~L~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~ 245 (693)
++. +++++||||+++..++.++..|...+.. .+.. +...+...+
T Consensus 379 ~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~---------------------------~~g~~~~~~ 431 (555)
T 3tbk_A 379 VLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGI---------------------------LTGRGRTNR 431 (555)
T ss_dssp HHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEE---------------------------CCC------
T ss_pred HHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeE---------------------------EEecCCccc
Confidence 443 4589999999999999999999874311 0000 001346678
Q ss_pred cCCCCHHHHHHHHHHHhC-CCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEE
Q psy15878 246 HADLTAGERRLIEEAYLA-GTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIML 324 (693)
Q Consensus 246 h~~l~~~eR~~ve~~f~~-g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l 324 (693)
||+|+.++|..+++.|++ |.++|||||+++++|+|+|++++||+++. |.++.+|.||+|| ||.. .|.++++
T Consensus 432 ~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~----p~s~~~~~Qr~GR-gR~~---~g~~~~l 503 (555)
T 3tbk_A 432 ATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY----VGNVIKMIQTRGR-GRAR---DSKCFLL 503 (555)
T ss_dssp --------------------CCSEEEECCCTTCCEETTSCSEEEEESC----CSSCCCEECSSCC-CTTT---SCEEEEE
T ss_pred ccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC----CCCHHHHHHhcCc-CcCC---CceEEEE
Confidence 899999999999999999 99999999999999999999999999985 7789999999999 8885 8999999
Q ss_pred eccc
Q psy15878 325 CKTM 328 (693)
Q Consensus 325 ~~~~ 328 (693)
+++.
T Consensus 504 ~~~~ 507 (555)
T 3tbk_A 504 TSSA 507 (555)
T ss_dssp ESCH
T ss_pred EcCC
Confidence 9877
No 31
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.94 E-value=1.3e-26 Score=270.19 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=63.6
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
+++++||||+++..|+.++..|...+... .+. ... +...|...+||+|+.++|..+
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~--~~~-------------------~~~---l~G~~~~~~h~~~~~~eR~~v 452 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLS--FLK-------------------PGI---LTGRGKTNQNTGMTLPAQKCI 452 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCC--SCC-------------------EEC------------------------
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcc--ccc-------------------eeE---EEccCCCccccCCCHHHHHHH
Confidence 46899999999999999999998744210 000 000 011234455889999999999
Q ss_pred HHHHhC-CCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccH
Q psy15878 258 EEAYLA-GTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDF 331 (693)
Q Consensus 258 e~~f~~-g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~ 331 (693)
++.|++ |.++|||||+++++|||+|++++||+++. |.+..+|.||+|| ||.+ .|.|++++++. +.
T Consensus 453 ~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~----p~s~~~~~Qr~GR-GR~~---~g~~~~l~~~~-~~ 518 (696)
T 2ykg_A 453 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY----VGNVIKMIQTRGR-GRAR---GSKCFLLTSNA-GV 518 (696)
T ss_dssp --------CCSCSEEEESSCCC---CCCSEEEEESC----C--CCCC----------C---CCEEEEEESCH-HH
T ss_pred HHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCC----CCCHHHHHHhhcc-CcCC---CceEEEEecCC-CH
Confidence 999998 99999999999999999999999999985 6788899999999 9985 89999999876 44
No 32
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.93 E-value=5.4e-26 Score=265.14 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=89.7
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCC--------CC
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHAD--------LT 250 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~--------l~ 250 (693)
++++||||++++.++.++..|.....+. .....+.++||+ |+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~------------------------------~~g~~~~~lhg~~~~~~~~~~~ 449 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFA------------------------------EVGVKAHHLIGAGHSSEFKPMT 449 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----------------------------------CEECCCSCCCTTCCCCC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCcccc------------------------------ccCcceEEEECCCCccCCCCCC
Confidence 8999999999999999999998731110 001238889999 99
Q ss_pred HHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 251 AGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 251 ~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
..+|..+++.|++|.++|||||+++++|||+|++++||+++. |.+..+|.||+|||||.| +.+++++...
T Consensus 450 ~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~----p~s~~~~~Qr~GRArr~g----~~~~l~~~~~ 519 (699)
T 4gl2_A 450 QNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGL----VTNEIAMVQARGRARADE----STYVLVAHSG 519 (699)
T ss_dssp HHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESC----CCCHHHHHHHHTTSCSSS----CEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCC----CCCHHHHHHHcCCCCCCC----ceEEEEEeCC
Confidence 999999999999999999999999999999999999999985 789999999999987765 4444444433
No 33
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=7.9e-26 Score=251.12 Aligned_cols=108 Identities=20% Similarity=0.281 Sum_probs=95.9
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcC--------CC
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHA--------DL 249 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~--------~l 249 (693)
.+.++||||+++..++.++..|...+ ..+..+|| ++
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~~------------------------------------~~~~~~~g~~~~~~~~~~ 403 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKDG------------------------------------IKAKRFVGQASKENDRGL 403 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTT------------------------------------CCEEEECCSSCC------
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHcC------------------------------------CCcEEEeccccccccccC
Confidence 58899999999999999999998732 23888999 99
Q ss_pred CHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 250 TAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 250 ~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
+..+|..+++.|++|..+|||||+++++|+|+|++++||.++. |.++..|.||+|||||.| .|.++.++.+.
T Consensus 404 ~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~----~~~~~~~~Qr~GR~~R~g---~g~~~~l~~~~ 475 (494)
T 1wp9_A 404 SQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP----VPSAIRSIQRRGRTGRHM---PGRVIILMAKG 475 (494)
T ss_dssp -CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSC----CHHHHHHHHHHTTSCSCC---CSEEEEEEETT
T ss_pred CHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCC----CCCHHHHHHHHhhccCCC---CceEEEEEecC
Confidence 9999999999999999999999999999999999999999874 678999999999999999 49999999877
No 34
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.93 E-value=3.1e-26 Score=270.19 Aligned_cols=291 Identities=13% Similarity=0.187 Sum_probs=151.0
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccC-CCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQEN-RIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~-~l~~i~lvVvDE~H~l~d 79 (693)
|+.|.+..|++++...+++|..++|+............+++|+|+||+++...++. ... .+.++++|||||||++.+
T Consensus 308 L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~~iViDEaH~~~~ 385 (797)
T 4a2q_A 308 VYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTG 385 (797)
T ss_dssp HHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEETTGGGCST
T ss_pred HHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHh--ccccccccCCEEEEECccccCC
Confidence 57889999999998889999999998765555444457899999999997655543 222 578999999999999986
Q ss_pred CCChHHHHHHHHHHhcc-----CCCceEEEEcCcCCC------------HHHHHHhhcCCCccCCCC---------cccc
Q psy15878 80 PQRGPILECVVSKVLYL-----KKSIQIFAMSATIGN------------INALSTFIEGITYVENSR---------PTKH 133 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~-----~~~~qii~lSATl~n------------~~~la~~l~~~~~~~~~r---------pv~l 133 (693)
.. + +..++.++... .+.+|+++||||++. ...+..+++...+..... +.+.
T Consensus 386 ~~--~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~ 462 (797)
T 4a2q_A 386 NH--P-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPE 462 (797)
T ss_dssp TS--H-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCC
T ss_pred Cc--c-HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCc
Confidence 43 2 44444444322 456899999999942 223444555432211110 0011
Q ss_pred eeeEEeCce----------------------eee------ecC--CCCch---hhhc-----------------------
Q psy15878 134 SEYVTVDKR----------------------VFQ------SFD--GKSLT---EIYA----------------------- 157 (693)
Q Consensus 134 ~~~~~~~~~----------------------~~~------~~~--~~~~~---~~~~----------------------- 157 (693)
......... .+. ... .+... ....
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 542 (797)
T 4a2q_A 463 IDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRAL 542 (797)
T ss_dssp CEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHH
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 111111100 000 000 00000 0000
Q ss_pred ------c-------------------------------------------------------cccccCCCCChhhHHHHH
Q psy15878 158 ------D-------------------------------------------------------NLDYSLTGSGPDAVLHLV 176 (693)
Q Consensus 158 ------~-------------------------------------------------------~~~~~~~~~~~~~l~~l~ 176 (693)
+ .........+...+.+++
T Consensus 543 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL 622 (797)
T 4a2q_A 543 FICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCIL 622 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Confidence 0 000000112223344444
Q ss_pred h------cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCC
Q psy15878 177 Q------GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLT 250 (693)
Q Consensus 177 ~------~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~ 250 (693)
. ++.++||||++++.++.++..|....... .+. .. .+...+...+||+|+
T Consensus 623 ~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~--~~~-------------------~~---~l~G~~~~~~hg~~~ 678 (797)
T 4a2q_A 623 DDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILN--YIK-------------------PG---VLMGRGRRDQTTGMT 678 (797)
T ss_dssp HHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTC--SCC-------------------CE---EC-------------
T ss_pred HHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccc--ccc-------------------ce---EEEecCCcccCCCCC
Confidence 3 56899999999999999999998631110 000 00 001134677899999
Q ss_pred HHHHHHHHHHHhC-CCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 251 AGERRLIEEAYLA-GTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 251 ~~eR~~ve~~f~~-g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
..+|..+++.|++ |.++|||||+++++|||+|++++||+++. |.++..|.||+|| ||.. .|.|++++++.
T Consensus 679 ~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~----p~s~~~~iQr~GR-GR~~---~g~~i~l~~~~ 749 (797)
T 4a2q_A 679 LPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY----SGNVTKMIQVRGR-GRAA---GSKCILVTSKT 749 (797)
T ss_dssp ---------------CCSEEEEECC-------CCCSEEEEESC----CSCHHHHHTC-----------CCCEEEEECCH
T ss_pred HHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC----CCCHHHHHHhcCC-CCCC---CceEEEEEeCC
Confidence 9999999999999 99999999999999999999999999985 7799999999999 9985 89999999876
No 35
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.92 E-value=5.3e-25 Score=264.84 Aligned_cols=220 Identities=13% Similarity=0.101 Sum_probs=150.4
Q ss_pred ChhhHHHHHHHHhhhhCc----EEEEeeccCCCCCc--cccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecc
Q psy15878 1 MVHEKYQSLAKAAEEFKF----YLEEYAGVKGQYPP--TKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEF 74 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~----~v~~~~G~~~~~~~--~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~ 74 (693)
||.|+++.+++++...++ ++..++|+.+...+ ....+.+++|+|+||+++..++.+ +.++++||+||+
T Consensus 111 La~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~------L~~l~~lViDEa 184 (1054)
T 1gku_B 111 LVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------LGHFDFIFVDDV 184 (1054)
T ss_dssp HHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT------SCCCSEEEESCH
T ss_pred HHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH------hccCCEEEEeCh
Confidence 688999999999988888 89999998764332 111223499999999996543332 679999999999
Q ss_pred cccCCCCChHHHHHHHHHHhcc--------CCCceEEEEcCcCCCHHHHHHhhcCCC--ccCCCCcccceeeEEeCceee
Q psy15878 75 HMLNEPQRGPILECVVSKVLYL--------KKSIQIFAMSATIGNINALSTFIEGIT--YVENSRPTKHSEYVTVDKRVF 144 (693)
Q Consensus 75 H~l~d~~rg~~le~il~~l~~~--------~~~~qii~lSATl~n~~~la~~l~~~~--~~~~~rpv~l~~~~~~~~~~~ 144 (693)
|++.+ +|..++.++.++... ....|++++|||+++...+..++.... +.......... .+. .+
T Consensus 185 h~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~-~i~----~~ 257 (1054)
T 1gku_B 185 DAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVR-NVE----DV 257 (1054)
T ss_dssp HHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCC-CEE----EE
T ss_pred hhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcC-Cce----EE
Confidence 99886 688899888877421 346789999999986432222221110 00000000000 000 00
Q ss_pred eecCCCCchhhhcccccccCCCCChhhHHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHH
Q psy15878 145 QSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALK 223 (693)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~ 223 (693)
.. ...+.+.+..++. .++++||||+|++.|+.++..|... .
T Consensus 258 ~~------------------~~~k~~~L~~ll~~~~~~~LVF~~t~~~a~~l~~~L~~~--~------------------ 299 (1054)
T 1gku_B 258 AV------------------NDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNK--F------------------ 299 (1054)
T ss_dssp EE------------------SCCCTTTTHHHHTTSCSCEEEEESSHHHHHHHHHTTTTS--S------------------
T ss_pred Ee------------------chhHHHHHHHHHhhcCCCEEEEEcCHHHHHHHHHHHhhc--c------------------
Confidence 00 1123344566666 4789999999999999999988762 1
Q ss_pred hccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEe----cchhhcccCCCCc-EEEEecCcC
Q psy15878 224 EENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICC----TSTLAAGVNLPAQ-RVIIRDSYV 293 (693)
Q Consensus 224 ~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLva----T~~l~~Gvnlp~~-~vVI~~~~~ 293 (693)
.+.++||++ ..+++.|++|.++|||| |+++++|+|+|++ ++||+++.+
T Consensus 300 -----------------~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 300 -----------------RIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp -----------------CEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred -----------------CeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 389999998 47889999999999999 9999999999995 999998763
No 36
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.92 E-value=3.6e-25 Score=264.01 Aligned_cols=291 Identities=13% Similarity=0.182 Sum_probs=151.2
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccC-CCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQEN-RIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~-~l~~i~lvVvDE~H~l~d 79 (693)
|+.|.+..|++++...++++..++|+............+++|+|+||+++...+.. ... .+.++++||+||||++..
T Consensus 308 L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~--~~~~~l~~~~liViDEaH~~~~ 385 (936)
T 4a2w_A 308 VYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTG 385 (936)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEEETGGGCST
T ss_pred HHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHc--CccccccCCCEEEEECccccCC
Confidence 57889999999988889999999998765444444446799999999997665543 222 568899999999999886
Q ss_pred CCChHHHHHHHHHHhcc-----CCCceEEEEcCcCCC------------HHHHHHhhcCCCccCCCC---------cccc
Q psy15878 80 PQRGPILECVVSKVLYL-----KKSIQIFAMSATIGN------------INALSTFIEGITYVENSR---------PTKH 133 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~-----~~~~qii~lSATl~n------------~~~la~~l~~~~~~~~~r---------pv~l 133 (693)
.. + +..++.++... .+.+|+++||||++. ...+...++...+..... +.+.
T Consensus 386 ~~--~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~ 462 (936)
T 4a2w_A 386 NH--P-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPE 462 (936)
T ss_dssp TC--H-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCC
T ss_pred Cc--c-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCc
Confidence 43 2 44444444322 456899999999942 223334454432211110 1111
Q ss_pred eeeEEeCceee----------------------------eecC--CCCch---hh-h-----------------------
Q psy15878 134 SEYVTVDKRVF----------------------------QSFD--GKSLT---EI-Y----------------------- 156 (693)
Q Consensus 134 ~~~~~~~~~~~----------------------------~~~~--~~~~~---~~-~----------------------- 156 (693)
........... .... .+... .. .
T Consensus 463 ~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l 542 (936)
T 4a2w_A 463 IDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRAL 542 (936)
T ss_dssp EEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHH
T ss_pred ceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 11111110000 0000 00000 00 0
Q ss_pred -----c----------------------c---------------------------------cccccCCCCChhhHHHHH
Q psy15878 157 -----A----------------------D---------------------------------NLDYSLTGSGPDAVLHLV 176 (693)
Q Consensus 157 -----~----------------------~---------------------------------~~~~~~~~~~~~~l~~l~ 176 (693)
. + .........+...+.+++
T Consensus 543 ~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL 622 (936)
T 4a2w_A 543 FICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCIL 622 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence 0 0 000000112233344444
Q ss_pred h------cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCC
Q psy15878 177 Q------GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLT 250 (693)
Q Consensus 177 ~------~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~ 250 (693)
. .+.++||||++++.++.++..|....... .+. ... +...+...+||+|+
T Consensus 623 ~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~--~ik-------------------~~~---l~G~~~~~~hg~m~ 678 (936)
T 4a2w_A 623 DDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILN--YIK-------------------PGV---LMGRGRRDQTTGMT 678 (936)
T ss_dssp HHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTS--SCC-------------------CEE---C-------------
T ss_pred HHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCcccc--ccc-------------------eeE---EecCCCcccCCCCC
Confidence 3 46899999999999999999998731110 000 000 01134667899999
Q ss_pred HHHHHHHHHHHhC-CCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 251 AGERRLIEEAYLA-GTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 251 ~~eR~~ve~~f~~-g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
..+|..+++.|++ |.++|||||+++++|||+|++++||+++. |.+..+|.||+|| ||.+ .|.++++++..
T Consensus 679 ~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~----p~s~~~~iQr~GR-GR~~---~g~vi~Li~~~ 749 (936)
T 4a2w_A 679 LPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY----SGNVTKMIQVRGR-GRAA---GSKCILVTSKT 749 (936)
T ss_dssp ---------------CCSEEEEECC------CCCCSEEEEESC----CSCSHHHHCC-----------CCCEEEEESCH
T ss_pred HHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC----CCCHHHHHHhcCC-CCCC---CCEEEEEEeCC
Confidence 9999999999999 99999999999999999999999999985 7799999999999 9986 89999998776
No 37
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.92 E-value=8.5e-25 Score=262.89 Aligned_cols=221 Identities=16% Similarity=0.113 Sum_probs=151.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCC---cccccc-CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYP---PTKRQL-NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~---~~~~~~-~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
||.|+++.|+.++ ..+++|..++|+..... ...... +.++|+|+||+++..++.. ..+.++++||+||+|+
T Consensus 133 La~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH~ 207 (1104)
T 4ddu_A 133 LVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDA 207 (1104)
T ss_dssp HHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHHH
T ss_pred HHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCCc
Confidence 6889999999987 78899999999876422 122222 3499999999997544442 3357899999999998
Q ss_pred cCCCC-----------ChHH-HHHHHHHHh------ccC--CCceEEEEcCcC-CC-H--HHHHHhhcCCCccCCCCccc
Q psy15878 77 LNEPQ-----------RGPI-LECVVSKVL------YLK--KSIQIFAMSATI-GN-I--NALSTFIEGITYVENSRPTK 132 (693)
Q Consensus 77 l~d~~-----------rg~~-le~il~~l~------~~~--~~~qii~lSATl-~n-~--~~la~~l~~~~~~~~~rpv~ 132 (693)
+.+.+ +... +..++..+. ... .+.|+++||||+ ++ . ..+..++..........+..
T Consensus 208 l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~ 287 (1104)
T 4ddu_A 208 VLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARN 287 (1104)
T ss_dssp HTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCC
T ss_pred cccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCC
Confidence 77533 3333 555555543 111 678999999994 43 1 22334443221111111111
Q ss_pred ceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccc
Q psy15878 133 HSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYK 211 (693)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~ 211 (693)
+...+ + ...+...+.+++. .++++||||++++.|+.++..|...+.
T Consensus 288 i~~~~------~--------------------~~~k~~~L~~ll~~~~~~~LVF~~s~~~a~~l~~~L~~~g~------- 334 (1104)
T 4ddu_A 288 ITHVR------I--------------------SSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKF------- 334 (1104)
T ss_dssp EEEEE------E--------------------SCCCHHHHHHHHHHHCSSEEEEESSSHHHHHHHHHHHHTTC-------
T ss_pred ceeEE------E--------------------ecCHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHHhCCC-------
Confidence 11100 0 1123455666666 579999999999999999999987332
Q ss_pred hhhHHHHHHHHHhccCCccchHHHHHHhhceE-EEcCCCCHHHHHHHHHHHhCCCCeEEEe----cchhhcccCCCC-cE
Q psy15878 212 KQEKEDLIEALKEENDGKLSTNLEECILYGVA-YHHADLTAGERRLIEEAYLAGTLQIICC----TSTLAAGVNLPA-QR 285 (693)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~-~~h~~l~~~eR~~ve~~f~~g~i~VLva----T~~l~~Gvnlp~-~~ 285 (693)
.+. .+|| +|+. ++.|++|.++|||| |+++++|||+|+ ++
T Consensus 335 -----------------------------~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~ 379 (1104)
T 4ddu_A 335 -----------------------------NVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIK 379 (1104)
T ss_dssp -----------------------------CEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCC
T ss_pred -----------------------------CeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCC
Confidence 276 8888 2555 99999999999999 999999999999 99
Q ss_pred EEEecCcCC
Q psy15878 286 VIIRDSYVG 294 (693)
Q Consensus 286 vVI~~~~~g 294 (693)
+||+++.+.
T Consensus 380 ~VI~~d~P~ 388 (1104)
T 4ddu_A 380 YVIFWGTPS 388 (1104)
T ss_dssp EEEEESCCE
T ss_pred EEEEECCCC
Confidence 999988643
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.91 E-value=3.9e-25 Score=255.81 Aligned_cols=250 Identities=18% Similarity=0.257 Sum_probs=164.6
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccc----cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQ----LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~----~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
||.|+++.+++++..++++|..++|+.........+ .+.++|+|+||+.+. ....+.++++||+||+|.
T Consensus 429 La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 429 LAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ-------EDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH-------HCCCCSCCCEEEEESCCC
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-------hhhhccCCceEEecccch
Confidence 688999999999988899999999986533221111 146999999998642 234678999999999998
Q ss_pred cCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCC--ccCCCCcccceeeEEeCceeeeecCCCCchh
Q psy15878 77 LNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGIT--YVENSRPTKHSEYVTVDKRVFQSFDGKSLTE 154 (693)
Q Consensus 77 l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~--~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 154 (693)
++...+. .+......+++++||||+.. ..++..+.... ...+..|... ..+ ..+..
T Consensus 502 ~g~~qr~--------~l~~~~~~~~vL~mSATp~p-~tl~~~~~g~~~~s~i~~~p~~r-~~i----~~~~~-------- 559 (780)
T 1gm5_A 502 FGVKQRE--------ALMNKGKMVDTLVMSATPIP-RSMALAFYGDLDVTVIDEMPPGR-KEV----QTMLV-------- 559 (780)
T ss_dssp C-----C--------CCCSSSSCCCEEEEESSCCC-HHHHHHHTCCSSCEEECCCCSSC-CCC----EECCC--------
T ss_pred hhHHHHH--------HHHHhCCCCCEEEEeCCCCH-HHHHHHHhCCcceeeeeccCCCC-cce----EEEEe--------
Confidence 7643221 12223456899999999753 44443221110 0000000000 000 00000
Q ss_pred hhcccccccCCCCChhhHHHHH----hcCCceEEEeCChHHH--------HHHHHHhhhccCCCCcccchhhHHHHHHHH
Q psy15878 155 IYADNLDYSLTGSGPDAVLHLV----QGNLMVLIFCSSKIAC--------SNLALRLQFDRFPGTKEYKKQEKEDLIEAL 222 (693)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~l~----~~~~~vLVF~~sr~~~--------e~la~~L~~~~~~~~~~~~~~~~~~~~~~l 222 (693)
.....+.+.+.+ ..+++++|||++...+ +.+++.|.+..+
T Consensus 560 ----------~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~------------------ 611 (780)
T 1gm5_A 560 ----------PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF------------------ 611 (780)
T ss_dssp ----------CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC------------------
T ss_pred ----------ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhc------------------
Confidence 111222233333 3789999999987554 333333332000
Q ss_pred HhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHH
Q psy15878 223 KEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNM 302 (693)
Q Consensus 223 ~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~ 302 (693)
-..+++++||+|+.++|..+++.|++|.++|||||+++++|||+|++++||.++. +..+.++
T Consensus 612 ---------------~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~---~r~~l~~ 673 (780)
T 1gm5_A 612 ---------------PEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENP---ERFGLAQ 673 (780)
T ss_dssp ------------------CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSC---SSSCTTH
T ss_pred ---------------CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCC---CCCCHHH
Confidence 0135999999999999999999999999999999999999999999999998764 2247889
Q ss_pred HHHHhhccCCCCCCCCCcEEEEecc
Q psy15878 303 YKQMVGRAGRTGLQESGESIMLCKT 327 (693)
Q Consensus 303 ~~Qr~GRaGR~g~d~~G~~i~l~~~ 327 (693)
|.||+||+||.| ..|.|++++++
T Consensus 674 l~Qr~GRaGR~g--~~g~~ill~~~ 696 (780)
T 1gm5_A 674 LHQLRGRVGRGG--QEAYCFLVVGD 696 (780)
T ss_dssp HHHHHHTSCCSS--TTCEEECCCCS
T ss_pred HHHHhcccCcCC--CCCEEEEEECC
Confidence 999999999998 68999999874
No 39
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.91 E-value=1.5e-24 Score=238.86 Aligned_cols=209 Identities=16% Similarity=0.129 Sum_probs=143.5
Q ss_pred CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHH
Q psy15878 38 NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALST 117 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~ 117 (693)
.+..|.++|++.+ .+.+.....+.++++||+||+|++ +..+...+..+..+. ..+++|+++||||+++ .+..
T Consensus 86 ~~~~i~~~t~~~l---~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~--~~~~~~~i~~SAT~~~--~~~~ 157 (451)
T 2jlq_A 86 GREIVDLMCHATF---TTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV--EMGEAAAIFMTATPPG--STDP 157 (451)
T ss_dssp SSCCEEEEEHHHH---HHHHHHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHH--HTTSCEEEEECSSCTT--CCCS
T ss_pred CCceEEEEChHHH---HHHhhCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhh--cCCCceEEEEccCCCc--cchh
Confidence 4568999999985 344455567899999999999987 333444444443332 2467899999999974 1111
Q ss_pred hhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHH-hcCCceEEEeCChHHHHHHH
Q psy15878 118 FIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLV-QGNLMVLIFCSSKIACSNLA 196 (693)
Q Consensus 118 ~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~vLVF~~sr~~~e~la 196 (693)
++. .+ + +. +... ... +... | ..+...+ ..++++||||+|++.|+.++
T Consensus 158 ~~~-----~~--~-~~---~~~~---~~~-p~~~----------~-------~~~~~~l~~~~~~~lVF~~s~~~a~~l~ 205 (451)
T 2jlq_A 158 FPQ-----SN--S-PI---EDIE---REI-PERS----------W-------NTGFDWITDYQGKTVWFVPSIKAGNDIA 205 (451)
T ss_dssp SCC-----CS--S-CE---EEEE---CCC-CSSC----------C-------SSSCHHHHHCCSCEEEECSSHHHHHHHH
T ss_pred hhc-----CC--C-ce---EecC---ccC-Cchh----------h-------HHHHHHHHhCCCCEEEEcCCHHHHHHHH
Confidence 110 00 0 00 0000 000 0000 0 0011222 26789999999999999999
Q ss_pred HHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhh
Q psy15878 197 LRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLA 276 (693)
Q Consensus 197 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~ 276 (693)
..|.+.+. .+..+|+.+ +..+++.|++|.++|||||++++
T Consensus 206 ~~L~~~g~------------------------------------~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~ 245 (451)
T 2jlq_A 206 NCLRKSGK------------------------------------RVIQLSRKT----FDTEYPKTKLTDWDFVVTTDISE 245 (451)
T ss_dssp HHHHTTTC------------------------------------CEEEECTTT----HHHHGGGGGSSCCSEEEECGGGG
T ss_pred HHHHHcCC------------------------------------eEEECCHHH----HHHHHHhhccCCceEEEECCHHH
Confidence 99987322 378889875 46789999999999999999999
Q ss_pred cccCCCCcEEEEecC--------cCCC--------ccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 277 AGVNLPAQRVIIRDS--------YVGR--------DFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 277 ~Gvnlp~~~vVI~~~--------~~g~--------~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
+|||+|+ ++||+++ +.+. .|.|..+|.||+|||||.|.+ .|.|++++...
T Consensus 246 ~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~-~g~~~~~~~~~ 311 (451)
T 2jlq_A 246 MGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ-EDDQYVFSGDP 311 (451)
T ss_dssp SSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred hCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC-CccEEEEeCCc
Confidence 9999999 9999876 2221 578999999999999999932 68888886443
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.91 E-value=1.3e-23 Score=254.33 Aligned_cols=250 Identities=17% Similarity=0.249 Sum_probs=174.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCcccc---c-cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKR---Q-LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~---~-~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
||.|+++.|++++...+++|..++|..+....... . .+.++|+|+||+.+ . ..-.++++++|||||+|+
T Consensus 664 La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll----~---~~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 664 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----Q---SDVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp HHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----H---SCCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH----h---CCccccccceEEEechHh
Confidence 57899999998888888999999886543222111 1 14699999999753 3 234578999999999998
Q ss_pred cCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCC-Ccc-CCCCc---ccceeeEEeCceeeeecCCCC
Q psy15878 77 LNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI-TYV-ENSRP---TKHSEYVTVDKRVFQSFDGKS 151 (693)
Q Consensus 77 l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~-~~~-~~~rp---v~l~~~~~~~~~~~~~~~~~~ 151 (693)
++ ......+..+ ..+.++++||||+.. ..+...+... ... ....| .++..++. .. .
T Consensus 737 ~g-----~~~~~~l~~l---~~~~~vl~lSATp~p-~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~--------~~-~- 797 (1151)
T 2eyq_A 737 FG-----VRHKERIKAM---RANVDILTLTATPIP-RTLNMAMSGMRDLSIIATPPARRLAVKTFVR--------EY-D- 797 (1151)
T ss_dssp SC-----HHHHHHHHHH---HTTSEEEEEESSCCC-HHHHHHHTTTSEEEECCCCCCBCBCEEEEEE--------EC-C-
T ss_pred cC-----hHHHHHHHHh---cCCCCEEEEcCCCCh-hhHHHHHhcCCCceEEecCCCCccccEEEEe--------cC-C-
Confidence 54 3344444444 467899999999753 2333222211 000 00000 00110000 00 0
Q ss_pred chhhhcccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccc
Q psy15878 152 LTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLS 231 (693)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 231 (693)
.....+.+...+..+++++||||+++.++.+++.|.+. . |
T Consensus 798 -------------~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~--~-p------------------------ 837 (1151)
T 2eyq_A 798 -------------SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL--V-P------------------------ 837 (1151)
T ss_dssp -------------HHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHH--C-T------------------------
T ss_pred -------------HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh--C-C------------------------
Confidence 00001122233337899999999999999999998872 1 0
Q ss_pred hHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccC
Q psy15878 232 TNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAG 311 (693)
Q Consensus 232 ~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaG 311 (693)
..++.++||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||..+. .+.+..+|.||+||+|
T Consensus 838 -------~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~---~~~~l~~l~Qr~GRvg 907 (1151)
T 2eyq_A 838 -------EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA---DHFGLAQLHQLRGRVG 907 (1151)
T ss_dssp -------TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTT---TSSCHHHHHHHHTTCC
T ss_pred -------CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCC---CCCCHHHHHHHHhccC
Confidence 135999999999999999999999999999999999999999999998887643 2568899999999999
Q ss_pred CCCCCCCCcEEEEeccc
Q psy15878 312 RTGLQESGESIMLCKTM 328 (693)
Q Consensus 312 R~g~d~~G~~i~l~~~~ 328 (693)
|.| ..|.||+++++.
T Consensus 908 R~g--~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 908 RSH--HQAYAWLLTPHP 922 (1151)
T ss_dssp BTT--BCEEEEEEECCG
T ss_pred cCC--CceEEEEEECCc
Confidence 998 689999998764
No 41
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.90 E-value=9.8e-24 Score=231.45 Aligned_cols=204 Identities=17% Similarity=0.085 Sum_probs=129.0
Q ss_pred EEcccchHH------HHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHH
Q psy15878 44 ICTIEKGSK------LIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALST 117 (693)
Q Consensus 44 V~Tpek~~~------Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~ 117 (693)
|+||+++.. +...+.....++++++||+||+|.+ +..+...+..+...+. ..++|+++||||++.. +..
T Consensus 72 v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~--~~~~~~l~~SAT~~~~--~~~ 146 (440)
T 1yks_A 72 HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR--ANESATILMTATPPGT--SDE 146 (440)
T ss_dssp CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH--TTSCEEEEECSSCTTC--CCS
T ss_pred ccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc--cCCceEEEEeCCCCch--hhh
Confidence 677766532 2223334455799999999999998 3333333333333322 4678999999999641 111
Q ss_pred hhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHH
Q psy15878 118 FIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLAL 197 (693)
Q Consensus 118 ~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~ 197 (693)
+. ....++. .+. ..++. ......+..+...++++||||++++.|+.+++
T Consensus 147 ~~------~~~~~~~---~~~-----~~~~~-----------------~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~ 195 (440)
T 1yks_A 147 FP------HSNGEIE---DVQ-----TDIPS-----------------EPWNTGHDWILADKRPTAWFLPSIRAANVMAA 195 (440)
T ss_dssp SC------CCSSCEE---EEE-----CCCCS-----------------SCCSSSCHHHHHCCSCEEEECSCHHHHHHHHH
T ss_pred hh------hcCCCee---Eee-----eccCh-----------------HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHH
Confidence 11 1111111 000 00000 00111223333478899999999999999999
Q ss_pred HhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhc
Q psy15878 198 RLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAA 277 (693)
Q Consensus 198 ~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~ 277 (693)
.|...+ ..+..+|| ++|..+++.|++|+++|||||+++++
T Consensus 196 ~L~~~~------------------------------------~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~ 235 (440)
T 1yks_A 196 SLRKAG------------------------------------KSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEM 235 (440)
T ss_dssp HHHHTT------------------------------------CCEEECCS----SSCC--------CCCSEEEESSSTTC
T ss_pred HHHHcC------------------------------------CCEEEecc----hhHHHHHhhhcCCCceEEEECChhhe
Confidence 998732 23899999 57899999999999999999999999
Q ss_pred ccCCCCcEEEEecCc---------------CCCccCCHHHHHHHhhccCCCCCCCCCcEEEEe
Q psy15878 278 GVNLPAQRVIIRDSY---------------VGRDFISLNMYKQMVGRAGRTGLQESGESIMLC 325 (693)
Q Consensus 278 Gvnlp~~~vVI~~~~---------------~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~ 325 (693)
|||+| +++||+++. ....|.+.++|.||+||+||.|. ..|.|++++
T Consensus 236 GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~-~~g~~~~l~ 296 (440)
T 1yks_A 236 GANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN-RDGDSYYYS 296 (440)
T ss_dssp CTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEEEEEC
T ss_pred eeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCC-CCceEEEEe
Confidence 99999 888886221 01147899999999999999741 589999997
No 42
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.90 E-value=2.8e-23 Score=235.98 Aligned_cols=207 Identities=16% Similarity=0.102 Sum_probs=144.9
Q ss_pred CCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHh
Q psy15878 39 KKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTF 118 (693)
Q Consensus 39 ~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~ 118 (693)
...+.++|.+.+ .+.+.....+.++++||+||||++ +..+...+..++..+. .++.|+++||||+++. +..+
T Consensus 254 ~~~i~~~t~~~l---~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~--~~~~q~il~SAT~~~~--~~~~ 325 (618)
T 2whx_A 254 REIVDLMCHATF---TTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE--MGEAAAIFMTATPPGS--TDPF 325 (618)
T ss_dssp SSCEEEEEHHHH---HHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH--HTSCEEEEECSSCTTC--CCSS
T ss_pred CceEEEEChHHH---HHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhc--ccCccEEEEECCCchh--hhhh
Confidence 445667777764 344555567899999999999998 4456667777776653 3678999999999752 1111
Q ss_pred hcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHH
Q psy15878 119 IEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALR 198 (693)
Q Consensus 119 l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~ 198 (693)
. ..+...+.+.. . + +.. .....+..+...++++||||+|++.|+.+++.
T Consensus 326 ~-----~~~~~~~~v~~------~-~---~~~----------------~~~~ll~~l~~~~~~~LVF~~s~~~a~~l~~~ 374 (618)
T 2whx_A 326 P-----QSNSPIEDIER------E-I---PER----------------SWNTGFDWITDYQGKTVWFVPSIKAGNDIANC 374 (618)
T ss_dssp C-----CCSSCEEEEEC------C-C---CSS----------------CCSSSCHHHHHCCSCEEEECSSHHHHHHHHHH
T ss_pred h-----ccCCceeeecc------c-C---CHH----------------HHHHHHHHHHhCCCCEEEEECChhHHHHHHHH
Confidence 1 11111111100 0 0 000 00011222333688999999999999999999
Q ss_pred hhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcc
Q psy15878 199 LQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAG 278 (693)
Q Consensus 199 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~G 278 (693)
|.+.+. .+..+||. +|..+++.|++|.++|||||+++++|
T Consensus 375 L~~~g~------------------------------------~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rG 414 (618)
T 2whx_A 375 LRKSGK------------------------------------RVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMG 414 (618)
T ss_dssp HHHTTC------------------------------------CEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTT
T ss_pred HHHcCC------------------------------------cEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcC
Confidence 987332 38889984 78889999999999999999999999
Q ss_pred cCCCCcEEEEecCcC----------------CCccCCHHHHHHHhhccCCCCCCCCCcEEEEec
Q psy15878 279 VNLPAQRVIIRDSYV----------------GRDFISLNMYKQMVGRAGRTGLQESGESIMLCK 326 (693)
Q Consensus 279 vnlp~~~vVI~~~~~----------------g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~ 326 (693)
||+| +++||+.+.. ...|.|..+|.||+|||||.|. ..|.|++++.
T Consensus 415 iDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~-~~G~ai~l~~ 476 (618)
T 2whx_A 415 ANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA-QEDDQYVFSG 476 (618)
T ss_dssp CCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEEEEECS
T ss_pred cccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC-CCCeEEEEcc
Confidence 9998 7777554320 0137899999999999999973 3799999986
No 43
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.90 E-value=4.9e-23 Score=225.41 Aligned_cols=229 Identities=16% Similarity=0.119 Sum_probs=143.5
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|.++.|. ++.|..++|+..... ..+..+.++|.+.+ .+.+.....++++++||+||+|+++ .
T Consensus 43 La~Q~~~~~~------~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~l---~~~l~~~~~~~~l~~vViDEaH~~~-~ 107 (431)
T 2v6i_A 43 VASEMYEALR------GEPIRYMTPAVQSER-----TGNEIVDFMCHSTF---TMKLLQGVRVPNYNLYIMDEAHFLD-P 107 (431)
T ss_dssp HHHHHHHHTT------TSCEEEC--------------CCCSEEEEEHHHH---HHHHHHTCCCCCCSEEEEESTTCCS-H
T ss_pred HHHHHHHHhC------CCeEEEEecCccccC-----CCCceEEEEchHHH---HHHHhcCccccCCCEEEEeCCccCC-c
Confidence 3556555543 556665555422111 12345667787764 4455555668999999999999863 1
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNL 160 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (693)
........+.... ..+++|+++||||+++. + ..+.....|+ .. +. . ..+.
T Consensus 108 ~~~~~~~~l~~~~--~~~~~~~l~~SAT~~~~--~------~~~~~~~~~i--~~-~~--~---~~~~------------ 157 (431)
T 2v6i_A 108 ASVAARGYIETRV--SMGDAGAIFMTATPPGT--T------EAFPPSNSPI--ID-EE--T---RIPD------------ 157 (431)
T ss_dssp HHHHHHHHHHHHH--HTTSCEEEEEESSCTTC--C------CSSCCCSSCC--EE-EE--C---CCCS------------
T ss_pred cHHHHHHHHHHHh--hCCCCcEEEEeCCCCcc--h------hhhcCCCCce--ee-cc--c---cCCH------------
Confidence 1222222222222 24679999999999751 0 1111111111 00 00 0 0000
Q ss_pred cccCCCCChhhHHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHh
Q psy15878 161 DYSLTGSGPDAVLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECIL 239 (693)
Q Consensus 161 ~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~ 239 (693)
.....+...+. .++++||||++++.|+.+++.|.+.+
T Consensus 158 ------~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~------------------------------------ 195 (431)
T 2v6i_A 158 ------KAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAG------------------------------------ 195 (431)
T ss_dssp ------SCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTT------------------------------------
T ss_pred ------HHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcC------------------------------------
Confidence 00111223333 67899999999999999999998732
Q ss_pred hceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEE----------------EEecCcCCCccCCHHHH
Q psy15878 240 YGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRV----------------IIRDSYVGRDFISLNMY 303 (693)
Q Consensus 240 ~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~v----------------VI~~~~~g~~~~s~~~~ 303 (693)
..+..+||+ +|..+++.|++|.++|||||+++++|||+|...| ||+++ .|.+..+|
T Consensus 196 ~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~----~p~~~~~~ 267 (431)
T 2v6i_A 196 KKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGP----IAITPASA 267 (431)
T ss_dssp CCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCCCSEEEECCEEEEEEEETTEEEEEEE----EECCHHHH
T ss_pred CeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccCCcEEEecCccccceecccceeeccc----ccCCHHHH
Confidence 238999997 6888999999999999999999999999995444 34444 37899999
Q ss_pred HHHhhccCCCCCCCCCcEEEEe
Q psy15878 304 KQMVGRAGRTGLQESGESIMLC 325 (693)
Q Consensus 304 ~Qr~GRaGR~g~d~~G~~i~l~ 325 (693)
.||+||+||.|. ..|.++++.
T Consensus 268 ~Qr~GR~GR~g~-~~~~~~~~~ 288 (431)
T 2v6i_A 268 AQRRGRIGRNPE-KLGDIYAYS 288 (431)
T ss_dssp HHHHTTSSCCTT-CCCCEEEEC
T ss_pred HHhhhccCCCCC-CCCeEEEEc
Confidence 999999999983 245555554
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.89 E-value=3.7e-23 Score=232.08 Aligned_cols=264 Identities=11% Similarity=0.106 Sum_probs=168.2
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|.++.|++++...+.++..++|+...... ....++|+|+||+.+ .+. ....+.++++|||||+|.+..
T Consensus 169 L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l---~~~--~~~~~~~~~liIiDE~H~~~~- 239 (510)
T 2oca_A 169 LTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTV---VKQ--PKEWFSQFGMMMNDECHLATG- 239 (510)
T ss_dssp HHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHH---TTS--CGGGGGGEEEEEEETGGGCCH-
T ss_pred HHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHH---hhc--hhhhhhcCCEEEEECCcCCCc-
Confidence 57888999988866566788888887654332 236799999999963 332 224568899999999999864
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCH----HHHHHhhcCCCccCCCCcccceeeEEeCcee----eeecCC---
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNI----NALSTFIEGITYVENSRPTKHSEYVTVDKRV----FQSFDG--- 149 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~----~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~----~~~~~~--- 149 (693)
..++.++. ...+..++++||||+++. ..+..+++...+....... ........... ...+..
T Consensus 240 ---~~~~~il~---~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 312 (510)
T 2oca_A 240 ---KSISSIIS---GLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKL-MEDGQVTELKINSIFLRYPDEFTT 312 (510)
T ss_dssp ---HHHHHHGG---GCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC----------CCEEEEEEEECCHHHHH
T ss_pred ---ccHHHHHH---hcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHH-hhCCcCCCceEEEEeecCChHHhc
Confidence 33444433 335677999999999752 2233444432221111100 00000000000 000000
Q ss_pred ----CCchhhhcccccccCCCCChhhHHHHHh----c-CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHH
Q psy15878 150 ----KSLTEIYADNLDYSLTGSGPDAVLHLVQ----G-NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIE 220 (693)
Q Consensus 150 ----~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~-~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~ 220 (693)
..+. ...... .......+.+.+++. . +.+++|||+ .+.|+.+++.|.+.+
T Consensus 313 ~~~~~~~~--~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~----------------- 371 (510)
T 2oca_A 313 KLKGKTYQ--EEIKII-TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEY----------------- 371 (510)
T ss_dssp HHTTCCHH--HHHHHH-HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTC-----------------
T ss_pred cccccchH--HHHHHH-hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcC-----------------
Confidence 0000 000000 001112223334333 3 445555555 888988998887721
Q ss_pred HHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEec-chhhcccCCCCcEEEEecCcCCCccCC
Q psy15878 221 ALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCT-STLAAGVNLPAQRVIIRDSYVGRDFIS 299 (693)
Q Consensus 221 ~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT-~~l~~Gvnlp~~~vVI~~~~~g~~~~s 299 (693)
..+.++||+++..+|..+++.|++|..+||||| +++++|+|+|++++||..+. |.+
T Consensus 372 -------------------~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~----~~s 428 (510)
T 2oca_A 372 -------------------DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHG----VKS 428 (510)
T ss_dssp -------------------SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSC----CCS
T ss_pred -------------------CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCC----CCC
Confidence 138999999999999999999999999999999 99999999999999999874 678
Q ss_pred HHHHHHHhhccCCCCCCCCCcEEEEec
Q psy15878 300 LNMYKQMVGRAGRTGLQESGESIMLCK 326 (693)
Q Consensus 300 ~~~~~Qr~GRaGR~g~d~~G~~i~l~~ 326 (693)
..+|.||+||+||.| ..|.++++++
T Consensus 429 ~~~~~Q~~GR~gR~g--~~~~~v~i~~ 453 (510)
T 2oca_A 429 KIIVLQTIGRVLRKH--GSKTIATVWD 453 (510)
T ss_dssp CCHHHHHHHHHHTTT--CCCCCCEEEE
T ss_pred HHHHHHHHhcccccC--CCCceEEEEE
Confidence 899999999999999 3453444444
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.89 E-value=8.6e-24 Score=234.90 Aligned_cols=256 Identities=15% Similarity=0.134 Sum_probs=162.5
Q ss_pred hhhHHHHHHHHhhhhCcE-EEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 2 VHEKYQSLAKAAEEFKFY-LEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 2 ~~e~~~~l~~~~~~~~~~-v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
+.|.+++|++ ++++ |..++|+.. ..++|+|+||+.+...+..+ .+++++||+||+|.+.+.
T Consensus 146 ~~Q~~~~~~~----~~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~-----~~~~~liIvDEaH~~~~~ 207 (472)
T 2fwr_A 146 AEQWKERLGI----FGEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAE 207 (472)
T ss_dssp HHHHHHHGGG----GCGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH-----TTTCSEEEEETGGGTTST
T ss_pred HHHHHHHHHh----CCCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh-----cCCCCEEEEECCcCCCCh
Confidence 4444444444 5888 888888653 34789999999864433321 246899999999999876
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCH----HHHHHhhcCCCccCCCCcc-------cceeeEEeC--ce---ee
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNI----NALSTFIEGITYVENSRPT-------KHSEYVTVD--KR---VF 144 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~----~~la~~l~~~~~~~~~rpv-------~l~~~~~~~--~~---~~ 144 (693)
.+.. ++.. .+..++++||||+.+. ..+..+++...+....... +....+... .. .|
T Consensus 208 ~~~~----~~~~----~~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 279 (472)
T 2fwr_A 208 SYVQ----IAQM----SIAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEY 279 (472)
T ss_dssp TTHH----HHHT----CCCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHT
T ss_pred HHHH----HHHh----cCCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHH
Confidence 5543 2222 2467899999999742 2355555543222111110 000000000 00 00
Q ss_pred ee--------cCCCCch------hhhcccc---c----------------ccCCCCChhhHHHHHh--cCCceEEEeCCh
Q psy15878 145 QS--------FDGKSLT------EIYADNL---D----------------YSLTGSGPDAVLHLVQ--GNLMVLIFCSSK 189 (693)
Q Consensus 145 ~~--------~~~~~~~------~~~~~~~---~----------------~~~~~~~~~~l~~l~~--~~~~vLVF~~sr 189 (693)
.. ....... +...+.. . ......+.+.+.+++. .++++||||+++
T Consensus 280 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~ 359 (472)
T 2fwr_A 280 EKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHN 359 (472)
T ss_dssp TTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCH
T ss_pred HHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCH
Confidence 00 0000000 0000000 0 0001112244555555 689999999999
Q ss_pred HHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEE
Q psy15878 190 IACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQII 269 (693)
Q Consensus 190 ~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VL 269 (693)
+.++.++..|. +..+||+++..+|+.+++.|++|.++||
T Consensus 360 ~~~~~l~~~l~-----------------------------------------~~~~~g~~~~~~R~~~~~~F~~g~~~vL 398 (472)
T 2fwr_A 360 ELVYRISKVFL-----------------------------------------IPAITHRTSREEREEILEGFRTGRFRAI 398 (472)
T ss_dssp HHHHHHHHHTT-----------------------------------------CCBCCSSSCSHHHHTHHHHHHHSSCSBC
T ss_pred HHHHHHHHHhC-----------------------------------------cceeeCCCCHHHHHHHHHHHhCCCCCEE
Confidence 99998887663 5568999999999999999999999999
Q ss_pred EecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCC-CCCcEEEEeccc
Q psy15878 270 CCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQ-ESGESIMLCKTM 328 (693)
Q Consensus 270 vaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d-~~G~~i~l~~~~ 328 (693)
|||+++++|+|+|++++||..+. |.+...|.||+|||||.|.+ ....+|.++...
T Consensus 399 v~T~~~~~Gldlp~~~~Vi~~~~----~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 399 VSSQVLDEGIDVPDANVGVIMSG----SGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp BCSSCCCSSSCSCCBSEEEEECC----SSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred EEcCchhcCcccccCcEEEEECC----CCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 99999999999999999999874 67899999999999999943 334455566554
No 46
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.89 E-value=1.4e-23 Score=238.27 Aligned_cols=282 Identities=15% Similarity=0.117 Sum_probs=181.1
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccch-HHHHhchh----ccCCCCcccEEEEeccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKG-SKLIGSLI----QENRIDEIGLIVIDEFH 75 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~-~~Ll~~l~----~~~~l~~i~lvVvDE~H 75 (693)
||.|..+++.+++..+|++|..+.||.+.. ..+....+||+|+||+++ ..+++..+ ....++.+.++|+||||
T Consensus 136 LA~qd~e~~~~l~~~lgl~v~~i~gg~~~~--~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD 213 (844)
T 1tf5_A 136 LASRDAEQMGKIFEFLGLTVGLNLNSMSKD--EKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVD 213 (844)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEECCTTSCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHH
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchh
Confidence 688999999999999999999999986532 222224689999999998 33333322 23456899999999999
Q ss_pred ccC-CCCCh---------------HHHHHHHHHHhc------cCCCceEE-----------------EEcCcCCC-HHHH
Q psy15878 76 MLN-EPQRG---------------PILECVVSKVLY------LKKSIQIF-----------------AMSATIGN-INAL 115 (693)
Q Consensus 76 ~l~-d~~rg---------------~~le~il~~l~~------~~~~~qii-----------------~lSATl~n-~~~l 115 (693)
.+. |..+. ..+..++..+.. -.+..|+. ++|||.+. ...+
T Consensus 214 ~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i 293 (844)
T 1tf5_A 214 SILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHI 293 (844)
T ss_dssp HHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHH
T ss_pred hhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHH
Confidence 765 65433 344444444320 01356776 78999653 2233
Q ss_pred HHhhcCC-CccCC-----------------CCc-------------------cccee-eEE---eCce------------
Q psy15878 116 STFIEGI-TYVEN-----------------SRP-------------------TKHSE-YVT---VDKR------------ 142 (693)
Q Consensus 116 a~~l~~~-~~~~~-----------------~rp-------------------v~l~~-~~~---~~~~------------ 142 (693)
...+.+. .+..+ .|. +.+.. ... +...
T Consensus 294 ~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~Gm 373 (844)
T 1tf5_A 294 NQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGM 373 (844)
T ss_dssp HHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccC
Confidence 2222111 00000 000 11100 000 0000
Q ss_pred ------------------eeeecCCCCchhhhcccccccCCCCChhhHHHHHh----cCCceEEEeCChHHHHHHHHHhh
Q psy15878 143 ------------------VFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQ 200 (693)
Q Consensus 143 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~ 200 (693)
+..++...........+..|.....+.+.+...+. .+.++||||+|+..++.++..|.
T Consensus 374 TGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~ 453 (844)
T 1tf5_A 374 TGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLK 453 (844)
T ss_dssp ESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH
Confidence 00000000000000000011111123344454443 57899999999999999999998
Q ss_pred hccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccC
Q psy15878 201 FDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVN 280 (693)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvn 280 (693)
..++. +..+||++...+|..+.++|+.| +|+|||+++++|+|
T Consensus 454 ~~gi~------------------------------------~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~D 495 (844)
T 1tf5_A 454 NKGIP------------------------------------HQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTD 495 (844)
T ss_dssp TTTCC------------------------------------CEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCC
T ss_pred HCCCC------------------------------------EEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcC
Confidence 85544 78899999999998888777776 69999999999999
Q ss_pred CC--------CcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 281 LP--------AQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 281 lp--------~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
+| +..+||+++. |-|...|.||+||+||.| .+|.++.+++..
T Consensus 496 I~l~~~V~~~ggl~VIn~d~----p~s~r~y~hr~GRTGRqG--~~G~s~~~vs~e 545 (844)
T 1tf5_A 496 IKLGEGVKELGGLAVVGTER----HESRRIDNQLRGRSGRQG--DPGITQFYLSME 545 (844)
T ss_dssp CCCCTTSGGGTSEEEEESSC----CSSHHHHHHHHTTSSGGG--CCEEEEEEEETT
T ss_pred ccccchhhhcCCcEEEEecC----CCCHHHHHhhcCccccCC--CCCeEEEEecHH
Confidence 99 7899999985 789999999999999999 799999998766
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.89 E-value=7.4e-23 Score=230.58 Aligned_cols=229 Identities=16% Similarity=0.067 Sum_probs=149.8
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|.++.+ .+.++..+....|+.. ...+++|+|+||+++ ++. ....++++++||+||+|++..
T Consensus 269 LA~Qia~~l---~~~~g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~--~~l~l~~l~~lVlDEAH~l~~- 332 (666)
T 3o8b_A 269 ATLGFGAYM---SKAHGIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LAD--GGCSGGAYDIIICDECHSTDS- 332 (666)
T ss_dssp HHHHHHHHH---HHHHSCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHT--TSCCTTSCSEEEETTTTCCSH-
T ss_pred HHHHHHHHH---HHHhCCCeeEEECcEe-------ccCCCCEEEECcHHH---HhC--CCcccCcccEEEEccchhcCc-
Confidence 355665544 4446777777777632 126789999999985 332 233567899999999998753
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNL 160 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (693)
.+...+..++..+.. .....+++||||+++. +. ...|. ...+... .........
T Consensus 333 ~~~~~l~~Il~~l~~-~~~~llil~SAT~~~~-----------i~-~~~p~--i~~v~~~-------~~~~i~~~~---- 386 (666)
T 3o8b_A 333 TTILGIGTVLDQAET-AGARLVVLATATPPGS-----------VT-VPHPN--IEEVALS-------NTGEIPFYG---- 386 (666)
T ss_dssp HHHHHHHHHHHHTTT-TTCSEEEEEESSCTTC-----------CC-CCCTT--EEEEECB-------SCSSEEETT----
T ss_pred cHHHHHHHHHHhhhh-cCCceEEEECCCCCcc-----------cc-cCCcc--eEEEeec-------ccchhHHHH----
Confidence 455556665555431 1223478889999851 11 01111 1111000 000000000
Q ss_pred cccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhh
Q psy15878 161 DYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILY 240 (693)
Q Consensus 161 ~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~ 240 (693)
.....+ ...++++||||+|++.|+.+++.|.+.+.
T Consensus 387 ----~~~~l~-----~~~~~~vLVFv~Tr~~ae~la~~L~~~g~------------------------------------ 421 (666)
T 3o8b_A 387 ----KAIPIE-----AIRGGRHLIFCHSKKKCDELAAKLSGLGI------------------------------------ 421 (666)
T ss_dssp ----EEECGG-----GSSSSEEEEECSCHHHHHHHHHHHHTTTC------------------------------------
T ss_pred ----hhhhhh-----hccCCcEEEEeCCHHHHHHHHHHHHhCCC------------------------------------
Confidence 000000 01678999999999999999999987332
Q ss_pred ceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEe----------cCcCC-------CccCCHHHH
Q psy15878 241 GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR----------DSYVG-------RDFISLNMY 303 (693)
Q Consensus 241 gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~----------~~~~g-------~~~~s~~~~ 303 (693)
.+..+||+|++++ |+++..+|||||+++++|||+| +++||+ ++|+. ..|.+..+|
T Consensus 422 ~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~sy 493 (666)
T 3o8b_A 422 NAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSR 493 (666)
T ss_dssp CEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHH
T ss_pred cEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHH
Confidence 3899999999876 4566679999999999999998 888884 33221 148899999
Q ss_pred HHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 304 KQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 304 ~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
.||+||+|| | ..|. +.++++.
T Consensus 494 iQRiGRtGR-g--~~G~-i~lvt~~ 514 (666)
T 3o8b_A 494 SQRRGRTGR-G--RRGI-YRFVTPG 514 (666)
T ss_dssp HHHHTTBCS-S--SCEE-EEESCCC
T ss_pred HHHhccCCC-C--CCCE-EEEEecc
Confidence 999999999 6 5898 8888766
No 48
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.89 E-value=3.6e-23 Score=228.36 Aligned_cols=208 Identities=18% Similarity=0.149 Sum_probs=137.4
Q ss_pred CCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHh
Q psy15878 39 KKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTF 118 (693)
Q Consensus 39 ~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~ 118 (693)
...+.++|.+. +.+.+.....++++++||+||+|.+. ......+..+..+. ..+++|+++||||++.. +
T Consensus 89 ~~~i~~~~~~~---l~~~l~~~~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~--~~~~~~~il~SAT~~~~--~--- 157 (459)
T 2z83_A 89 NEIVDVMCHAT---LTHRLMSPNRVPNYNLFVMDEAHFTD-PASIAARGYIATKV--ELGEAAAIFMTATPPGT--T--- 157 (459)
T ss_dssp CCSEEEEEHHH---HHHHHHSCC-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHH--HTTSCEEEEECSSCTTC--C---
T ss_pred CcEEEEEchHH---HHHHhhccccccCCcEEEEECCccCC-chhhHHHHHHHHHh--ccCCccEEEEEcCCCcc--h---
Confidence 34577788776 34555566678999999999999752 12222332222222 24678999999999741 1
Q ss_pred hcCCCccCCCCcccceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHh-cCCceEEEeCChHHHHHHHH
Q psy15878 119 IEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ-GNLMVLIFCSSKIACSNLAL 197 (693)
Q Consensus 119 l~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vLVF~~sr~~~e~la~ 197 (693)
..+.....|+.. +. . ..+. .. ... +...+. .++++||||+|++.|+.++.
T Consensus 158 ---~~~~~~~~pi~~---~~--~---~~~~-~~-------------~~~----~~~~l~~~~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 158 ---DPFPDSNAPIHD---LQ--D---EIPD-RA-------------WSS----GYEWITEYAGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp ---CSSCCCSSCEEE---EE--C---CCCS-SC-------------CSS----CCHHHHHCCSCEEEECSCHHHHHHHHH
T ss_pred ---hhhccCCCCeEE---ec--c---cCCc-ch-------------hHH----HHHHHHhcCCCEEEEeCChHHHHHHHH
Confidence 111111112111 00 0 0000 00 001 112222 67899999999999999999
Q ss_pred HhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhc
Q psy15878 198 RLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAA 277 (693)
Q Consensus 198 ~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~ 277 (693)
.|...+. .+..+|+. +|..+++.|++|.++|||||+++++
T Consensus 209 ~L~~~g~------------------------------------~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~ 248 (459)
T 2z83_A 209 CLQRAGK------------------------------------KVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEM 248 (459)
T ss_dssp HHHHTTC------------------------------------CEEEESTT----CCCCCGGGSSSCCCSEEEESSCC--
T ss_pred HHHhcCC------------------------------------cEEecCHH----HHHHHHhhccCCCceEEEECChHHh
Confidence 9987322 38889984 7889999999999999999999999
Q ss_pred ccCCCCcEEEEecC--------cC--------CCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 278 GVNLPAQRVIIRDS--------YV--------GRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 278 Gvnlp~~~vVI~~~--------~~--------g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
|||+|+ ++||+.+ +. ...|.|..+|.||+|||||.|. ..|.|++++.+.
T Consensus 249 GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~-~~G~~~~~~~~~ 313 (459)
T 2z83_A 249 GANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPN-QVGDEYHYGGAT 313 (459)
T ss_dssp -CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTT-CCCEEEEECSCC
T ss_pred CeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCC-CCCeEEEEEccc
Confidence 999999 8888833 11 1248899999999999999982 279999998764
No 49
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.88 E-value=8.7e-23 Score=231.12 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=101.7
Q ss_pred ChhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceE
Q psy15878 168 GPDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVA 243 (693)
Q Consensus 168 ~~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~ 243 (693)
+.+.+...+. .+.|+||||+|+..++.++..|.+.++. +.
T Consensus 426 K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~------------------------------------~~ 469 (853)
T 2fsf_A 426 KIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIK------------------------------------HN 469 (853)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCC------------------------------------CE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCC------------------------------------EE
Confidence 3445555553 5789999999999999999999985544 78
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCc-------------------------------------EE
Q psy15878 244 YHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQ-------------------------------------RV 286 (693)
Q Consensus 244 ~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~-------------------------------------~v 286 (693)
.+||++...+|..+.++|+.| .|+|||+++++|+||+.. .+
T Consensus 470 vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~ 547 (853)
T 2fsf_A 470 VLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLH 547 (853)
T ss_dssp ECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcE
Confidence 899999999999999999998 699999999999999973 69
Q ss_pred EEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 287 IIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 287 VI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
||++.. |-|...|.||+||+||.| .+|.++.+++..
T Consensus 548 VI~te~----pes~riy~qr~GRTGRqG--d~G~s~~fls~e 583 (853)
T 2fsf_A 548 IIGTER----HESRRIDNQLRGRSGRQG--DAGSSRFYLSME 583 (853)
T ss_dssp EEESSC----CSSHHHHHHHHTTSSGGG--CCEEEEEEEETT
T ss_pred EEEccC----CCCHHHHHhhccccccCC--CCeeEEEEeccc
Confidence 999875 789999999999999999 799999988766
No 50
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.87 E-value=3.5e-22 Score=228.43 Aligned_cols=196 Identities=17% Similarity=0.136 Sum_probs=132.7
Q ss_pred HHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhhcCCCccCCCCccc
Q psy15878 53 LIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTK 132 (693)
Q Consensus 53 Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l~~~~~~~~~rpv~ 132 (693)
+.+.++....++++++||+||+|++. ......+..+...+. ..++|+++||||++.. +. .+.....|
T Consensus 320 l~~~l~~~~~l~~l~lvViDEaH~~~-~~~~~~~~~l~~~~~--~~~~~vl~~SAT~~~~--i~------~~~~~~~~-- 386 (673)
T 2wv9_A 320 LTHRLMSPLRVPNYNLFVMDEAHFTD-PASIAARGYIATRVE--AGEAAAIFMTATPPGT--SD------PFPDTNSP-- 386 (673)
T ss_dssp HHHHHHSSSCCCCCSEEEEESTTCCC-HHHHHHHHHHHHHHH--TTSCEEEEECSSCTTC--CC------SSCCCSSC--
T ss_pred hHHHHhcccccccceEEEEeCCcccC-ccHHHHHHHHHHhcc--ccCCcEEEEcCCCChh--hh------hhcccCCc--
Confidence 34555555678999999999999882 112222333222221 3678999999999731 10 11111111
Q ss_pred ceeeEEeCceeeeecCCCCchhhhcccccccCCCCChhhHHHHHhcCCceEEEeCChHHHHHHHHHhhhccCCCCcccch
Q psy15878 133 HSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKK 212 (693)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~ 212 (693)
+.. +. . ..+ .......+..+...++++||||++++.|+.++..|...+
T Consensus 387 i~~-v~--~---~~~-----------------~~~~~~~l~~l~~~~~~~lVF~~s~~~~e~la~~L~~~g--------- 434 (673)
T 2wv9_A 387 VHD-VS--S---EIP-----------------DRAWSSGFEWITDYAGKTVWFVASVKMSNEIAQCLQRAG--------- 434 (673)
T ss_dssp EEE-EE--C---CCC-----------------SSCCSSCCHHHHSCCSCEEEECSSHHHHHHHHHHHHTTT---------
T ss_pred eEE-Ee--e---ecC-----------------HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHhCC---------
Confidence 110 00 0 000 000111222333478899999999999999999998732
Q ss_pred hhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCc
Q psy15878 213 QEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY 292 (693)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~ 292 (693)
..+..+|| ++|..+++.|++|.++|||||+++++|||+| +++||+++.
T Consensus 435 ---------------------------~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~ 482 (673)
T 2wv9_A 435 ---------------------------KRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRK 482 (673)
T ss_dssp ---------------------------CCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred ---------------------------CeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCC
Confidence 23899999 4899999999999999999999999999999 888887420
Q ss_pred --------C--------CCccCCHHHHHHHhhccCCCCCCCCCcEEEEec
Q psy15878 293 --------V--------GRDFISLNMYKQMVGRAGRTGLQESGESIMLCK 326 (693)
Q Consensus 293 --------~--------g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~ 326 (693)
+ ...|.+.++|.||+||+||.+ ...|.|++++.
T Consensus 483 ~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~-g~~G~ai~l~~ 531 (673)
T 2wv9_A 483 SVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNP-SQIGDEYHYGG 531 (673)
T ss_dssp ECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCS-SCCCEEEEECS
T ss_pred cccceeeecccccceecccCCCCHHHHHHHhhccCCCC-CCCCEEEEEEe
Confidence 1 124789999999999999993 15899999963
No 51
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.86 E-value=8.5e-22 Score=223.25 Aligned_cols=282 Identities=15% Similarity=0.096 Sum_probs=183.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccch-HHHHhchh----ccCCCCcccEEEEeccc
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKG-SKLIGSLI----QENRIDEIGLIVIDEFH 75 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~-~~Ll~~l~----~~~~l~~i~lvVvDE~H 75 (693)
||.|..+++.+++..+|++|..+.|+++. ...+....+||+|+||+++ ..+++..+ ....++.+.++||||||
T Consensus 164 LA~Qdae~m~~l~~~lGLsv~~i~gg~~~--~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaD 241 (922)
T 1nkt_A 164 LAKRDSEWMGRVHRFLGLQVGVILATMTP--DERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVD 241 (922)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEECCTTCCH--HHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHH
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCCCH--HHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChH
Confidence 68899999999999999999999998652 2222224689999999996 33343322 23456899999999999
Q ss_pred ccC-CCC---------------ChHHHHHHHHHHhcc------CCCceEE-----------------EEcCcCCC-HHHH
Q psy15878 76 MLN-EPQ---------------RGPILECVVSKVLYL------KKSIQIF-----------------AMSATIGN-INAL 115 (693)
Q Consensus 76 ~l~-d~~---------------rg~~le~il~~l~~~------~~~~qii-----------------~lSATl~n-~~~l 115 (693)
.+. |.. +...+..++..+..- .+..|+. ++|||.+. ...+
T Consensus 242 smLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i 321 (922)
T 1nkt_A 242 SILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYL 321 (922)
T ss_dssp HHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHH
T ss_pred HHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHH
Confidence 765 432 234555566555210 1467887 88999765 3333
Q ss_pred HHhhcCC--------CccCC----------CCc-------------------ccce-eeE---EeCce------------
Q psy15878 116 STFIEGI--------TYVEN----------SRP-------------------TKHS-EYV---TVDKR------------ 142 (693)
Q Consensus 116 a~~l~~~--------~~~~~----------~rp-------------------v~l~-~~~---~~~~~------------ 142 (693)
...+.+. .+..+ .|. +.+. +.. .+..+
T Consensus 322 ~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GM 401 (922)
T 1nkt_A 322 NNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGM 401 (922)
T ss_dssp HHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhcc
Confidence 3222110 00000 000 0010 000 00000
Q ss_pred ------------------eeeecCCCCchhhhcccccccCCCCChhhHHHHHh----cCCceEEEeCChHHHHHHHHHhh
Q psy15878 143 ------------------VFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQ 200 (693)
Q Consensus 143 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~ 200 (693)
+..++...........+..|.....+.+.+...+. .+.|+||||+|+..++.++..|.
T Consensus 402 TGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~ 481 (922)
T 1nkt_A 402 TGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFT 481 (922)
T ss_dssp ESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH
Confidence 00000000000000000011111223344555443 67899999999999999999999
Q ss_pred hccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccC
Q psy15878 201 FDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVN 280 (693)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvn 280 (693)
+.++. +..+||+....++..+.++|+.| .|+|||+++++|+|
T Consensus 482 ~~Gi~------------------------------------~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtD 523 (922)
T 1nkt_A 482 KRRIP------------------------------------HNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTD 523 (922)
T ss_dssp HTTCC------------------------------------CEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCC
T ss_pred HCCCC------------------------------------EEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCcc
Confidence 85544 78899999988999999999988 69999999999999
Q ss_pred CCCc----------------------------------------------------EEEEecCcCCCccCCHHHHHHHhh
Q psy15878 281 LPAQ----------------------------------------------------RVIIRDSYVGRDFISLNMYKQMVG 308 (693)
Q Consensus 281 lp~~----------------------------------------------------~vVI~~~~~g~~~~s~~~~~Qr~G 308 (693)
|+.. .+||++.. |-|...|.||+|
T Consensus 524 I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~----pes~riy~qr~G 599 (922)
T 1nkt_A 524 IVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTER----HESRRIDNQLRG 599 (922)
T ss_dssp CCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSC----CSSHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccC----CCCHHHHHHHhc
Confidence 9974 68999875 789999999999
Q ss_pred ccCCCCCCCCCcEEEEeccc
Q psy15878 309 RAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 309 RaGR~g~d~~G~~i~l~~~~ 328 (693)
|+||.| .+|.++.+++..
T Consensus 600 RTGRqG--dpG~s~fflSle 617 (922)
T 1nkt_A 600 RSGRQG--DPGESRFYLSLG 617 (922)
T ss_dssp TSSGGG--CCEEEEEEEETT
T ss_pred ccccCC--CCeeEEEEechh
Confidence 999999 799999998766
No 52
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.85 E-value=8.7e-21 Score=187.03 Aligned_cols=126 Identities=20% Similarity=0.325 Sum_probs=110.5
Q ss_pred CChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEE
Q psy15878 167 SGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAY 244 (693)
Q Consensus 167 ~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~ 244 (693)
.+.+.+.+++. .++++||||+++..++.++..|...+ .++.+
T Consensus 17 ~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------------------------------------~~~~~ 60 (212)
T 3eaq_A 17 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG------------------------------------HPAQA 60 (212)
T ss_dssp SHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT------------------------------------CCEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC------------------------------------CCEEE
Confidence 44566777776 78999999999999999999987733 33899
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEE
Q psy15878 245 HHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIML 324 (693)
Q Consensus 245 ~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l 324 (693)
+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+++. |.+..+|.||+|||||.| ..|.|+++
T Consensus 61 lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~----p~~~~~~~qr~GR~gR~g--~~g~~~~l 134 (212)
T 3eaq_A 61 LHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRL----PDRAEAYQHRSGRTGRAG--RGGRVVLL 134 (212)
T ss_dssp ECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSC----CSSHHHHHHHHTTBCCCC----BEEEEE
T ss_pred EECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCC----CcCHHHHHHHhcccCCCC--CCCeEEEE
Confidence 999999999999999999999999999999999999999999999885 789999999999999999 68999999
Q ss_pred ecccccHHHHH
Q psy15878 325 CKTMQDFLRFS 335 (693)
Q Consensus 325 ~~~~~~~~~~~ 335 (693)
+++. +...+.
T Consensus 135 ~~~~-~~~~~~ 144 (212)
T 3eaq_A 135 YGPR-ERRDVE 144 (212)
T ss_dssp ECGG-GHHHHH
T ss_pred Echh-HHHHHH
Confidence 9887 655543
No 53
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=8.9e-21 Score=181.22 Aligned_cols=129 Identities=17% Similarity=0.280 Sum_probs=106.2
Q ss_pred hhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEc
Q psy15878 169 PDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHH 246 (693)
Q Consensus 169 ~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h 246 (693)
.+.+..++. .++++||||+++..|+.++..|...+ .++.++|
T Consensus 22 ~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------------------------------------~~~~~~~ 65 (175)
T 2rb4_A 22 YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG------------------------------------HQVSLLS 65 (175)
T ss_dssp HHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT------------------------------------CCEEEEC
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC------------------------------------CcEEEEe
Confidence 445666666 67899999999999999999998732 2399999
Q ss_pred CCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCC--CccCCHHHHHHHhhccCCCCCCCCCcEEEE
Q psy15878 247 ADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVG--RDFISLNMYKQMVGRAGRTGLQESGESIML 324 (693)
Q Consensus 247 ~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g--~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l 324 (693)
|+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+++.+. ....+..+|.||+|||||.| ..|.++++
T Consensus 66 g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g--~~g~~~~~ 143 (175)
T 2rb4_A 66 GELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFG--KKGLAFNM 143 (175)
T ss_dssp SSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC------CCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCC--CCceEEEE
Confidence 999999999999999999999999999999999999999999987521 01179999999999999998 68999999
Q ss_pred ecccccHHHHHH
Q psy15878 325 CKTMQDFLRFSS 336 (693)
Q Consensus 325 ~~~~~~~~~~~~ 336 (693)
+.+. +...+.+
T Consensus 144 ~~~~-~~~~~~~ 154 (175)
T 2rb4_A 144 IEVD-ELPSLMK 154 (175)
T ss_dssp ECGG-GHHHHHH
T ss_pred Eccc-hHHHHHH
Confidence 9887 6555543
No 54
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.85 E-value=1.2e-20 Score=178.18 Aligned_cols=127 Identities=17% Similarity=0.295 Sum_probs=111.5
Q ss_pred ChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEE
Q psy15878 168 GPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYH 245 (693)
Q Consensus 168 ~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~ 245 (693)
+.+.+..++. .++++||||+++..++.++..|...+ ..+..+
T Consensus 22 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------------------------------------~~~~~~ 65 (163)
T 2hjv_A 22 KFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG------------------------------------YPCDKI 65 (163)
T ss_dssp HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT------------------------------------CCEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC------------------------------------CcEEEE
Confidence 3455666666 77899999999999999999998732 239999
Q ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEe
Q psy15878 246 HADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLC 325 (693)
Q Consensus 246 h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~ 325 (693)
||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+++. |.+..+|.||+||+||.| ..|.+++++
T Consensus 66 hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~----p~~~~~~~qr~GR~~R~g--~~g~~~~~~ 139 (163)
T 2hjv_A 66 HGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDL----PLEKESYVHRTGRTGRAG--NKGKAISFV 139 (163)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSC----CSSHHHHHHHTTTSSCTT--CCEEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCC----CCCHHHHHHhccccCcCC--CCceEEEEe
Confidence 99999999999999999999999999999999999999999999875 789999999999999999 689999999
Q ss_pred cccccHHHHHHH
Q psy15878 326 KTMQDFLRFSSM 337 (693)
Q Consensus 326 ~~~~~~~~~~~~ 337 (693)
.+. +...+.++
T Consensus 140 ~~~-~~~~~~~i 150 (163)
T 2hjv_A 140 TAF-EKRFLADI 150 (163)
T ss_dssp CGG-GHHHHHHH
T ss_pred cHH-HHHHHHHH
Confidence 887 66655443
No 55
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.84 E-value=9.6e-21 Score=179.15 Aligned_cols=139 Identities=22% Similarity=0.377 Sum_probs=113.4
Q ss_pred ChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEE
Q psy15878 168 GPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYH 245 (693)
Q Consensus 168 ~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~ 245 (693)
+.+.+.+++. +++++||||++++.++.++..|...+ .++..+
T Consensus 17 K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------------------------------------~~~~~~ 60 (165)
T 1fuk_A 17 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK------------------------------------FTVSAI 60 (165)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTT------------------------------------CCEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC------------------------------------CCEEEE
Confidence 4455666666 67899999999999999999998732 339999
Q ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEe
Q psy15878 246 HADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLC 325 (693)
Q Consensus 246 h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~ 325 (693)
||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||.| ..|.|++++
T Consensus 61 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~----p~~~~~~~qr~GR~gR~g--~~g~~~~~~ 134 (165)
T 1fuk_A 61 YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL----PANKENYIHRIGRGGRFG--RKGVAINFV 134 (165)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSC----CSSGGGGGGSSCSCC-------CEEEEEE
T ss_pred ECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCC----CCCHHHHHHHhcccccCC--CCceEEEEE
Confidence 99999999999999999999999999999999999999999999875 779999999999999998 689999999
Q ss_pred cccccHHHH---HHHHhCCCCcccccC
Q psy15878 326 KTMQDFLRF---SSMMNAGPEPISSHM 349 (693)
Q Consensus 326 ~~~~~~~~~---~~~l~~~~~~i~s~l 349 (693)
++. +...+ .+++....+++.+.+
T Consensus 135 ~~~-~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
T 1fuk_A 135 TNE-DVGAMRELEKFYSTQIEELPSDI 160 (165)
T ss_dssp ETT-THHHHHHHHHHSSCCCEECCSCC
T ss_pred cch-HHHHHHHHHHHHccCccccCccH
Confidence 887 66554 444555555554443
No 56
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.84 E-value=4.1e-20 Score=220.85 Aligned_cols=141 Identities=13% Similarity=0.162 Sum_probs=110.2
Q ss_pred hhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhc-cCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEE
Q psy15878 169 PDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFD-RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYH 245 (693)
Q Consensus 169 ~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~ 245 (693)
...+.+++. .+.++||||+++..++.++..|... + ..+..+
T Consensus 491 ~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g------------------------------------~~~~~l 534 (968)
T 3dmq_A 491 VEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG------------------------------------IRAAVF 534 (968)
T ss_dssp HHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTC------------------------------------CCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcC------------------------------------CcEEEE
Confidence 445566665 6899999999999999999999851 2 238999
Q ss_pred cCCCCHHHHHHHHHHHhCCC--CeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEE
Q psy15878 246 HADLTAGERRLIEEAYLAGT--LQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIM 323 (693)
Q Consensus 246 h~~l~~~eR~~ve~~f~~g~--i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~ 323 (693)
||+|+..+|..+++.|++|. ++|||||+++++|+|+|++++||+++. |.++..|.||+||+||.|......++.
T Consensus 535 hG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~----p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 535 HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL----PFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp CTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSC----CSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred eCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecC----CCCHHHHHHHhhccccCCCCceEEEEE
Confidence 99999999999999999998 999999999999999999999999874 789999999999999999543334444
Q ss_pred EecccccHHHHHHHHhCCCCcccccC
Q psy15878 324 LCKTMQDFLRFSSMMNAGPEPISSHM 349 (693)
Q Consensus 324 l~~~~~~~~~~~~~l~~~~~~i~s~l 349 (693)
++....-.+.+.+++..........+
T Consensus 611 ~~~~~t~ee~i~~~~~~k~~~~~~~~ 636 (968)
T 3dmq_A 611 PYLEKTAQSVLVRWYHEGLDAFEHTC 636 (968)
T ss_dssp EEETTSHHHHHHHHHHHTTCCSSSCC
T ss_pred ecCCChHHHHHHHHHHhCCCceecCC
Confidence 44444233445555544443333333
No 57
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.83 E-value=5.2e-20 Score=210.14 Aligned_cols=240 Identities=16% Similarity=0.118 Sum_probs=137.0
Q ss_pred CCCcEEEEcccchHHHHh--chhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCC--HH
Q psy15878 38 NKKSIYICTIEKGSKLIG--SLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN--IN 113 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~--~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n--~~ 113 (693)
...+|+|+||+++....+ .+...-....+++||+||||++.... +..+..++..+ +..++++||||+.+ ..
T Consensus 273 ~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~----~~~~~l~lTATP~~~~~~ 347 (590)
T 3h1t_A 273 KSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYF----EPAFQIGMTATPLREDNR 347 (590)
T ss_dssp SSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHS----TTSEEEEEESSCSCTTTH
T ss_pred CCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhC----CcceEEEeccccccccch
Confidence 568999999999765432 11222234678999999999987532 23455555543 35789999999874 34
Q ss_pred HHHHhhcCCCccCCCCc-------cccee-eEEeCceeeeecCC-CCch-hhhcc-cccccCC--------CCChhh---
Q psy15878 114 ALSTFIEGITYVENSRP-------TKHSE-YVTVDKRVFQSFDG-KSLT-EIYAD-NLDYSLT--------GSGPDA--- 171 (693)
Q Consensus 114 ~la~~l~~~~~~~~~rp-------v~l~~-~~~~~~~~~~~~~~-~~~~-~~~~~-~~~~~~~--------~~~~~~--- 171 (693)
....+++...+...... .+... .+............ .... ....+ +..+... ......
T Consensus 348 ~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~ 427 (590)
T 3h1t_A 348 DTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAK 427 (590)
T ss_dssp HHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHH
T ss_pred hHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHH
Confidence 56667765432211100 11100 00000000000000 0000 00000 0000000 001111
Q ss_pred -HHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcC
Q psy15878 172 -VLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHA 247 (693)
Q Consensus 172 -l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~ 247 (693)
+.+.+. .++++||||++++.|+.++..|.+.+. .........+..+||
T Consensus 428 ~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~----------------------------~~~~~~~~~~~~i~g 479 (590)
T 3h1t_A 428 HLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNS----------------------------DLSRKHPDYVARVTS 479 (590)
T ss_dssp HHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTH----------------------------HHHTTCTTSEEECSS
T ss_pred HHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhh----------------------------hhhccCCCeEEEEeC
Confidence 222222 568999999999999999999976210 000000122778888
Q ss_pred CCCHHHHHHHHHHHhCCCCe---EEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCC
Q psy15878 248 DLTAGERRLIEEAYLAGTLQ---IICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGL 315 (693)
Q Consensus 248 ~l~~~eR~~ve~~f~~g~i~---VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~ 315 (693)
+++ ++|+.+++.|++|..+ |||||+++++|+|+|++++||.++. +.|...|.||+||+||.+.
T Consensus 480 ~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~----~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 480 EEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARV----VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESC----CCCHHHHHHHHTTSCCCBG
T ss_pred CCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEec----CCChHHHHHHHhhhcccCc
Confidence 875 4799999999998766 8899999999999999999998763 6799999999999999884
No 58
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.83 E-value=2.8e-20 Score=177.14 Aligned_cols=119 Identities=20% Similarity=0.244 Sum_probs=107.0
Q ss_pred ChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEE
Q psy15878 168 GPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYH 245 (693)
Q Consensus 168 ~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~ 245 (693)
+.+.+.+++. +++++||||+++..|+.++..|...+ .++..+
T Consensus 18 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------------------------------------~~~~~~ 61 (172)
T 1t5i_A 18 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN------------------------------------FPAIAI 61 (172)
T ss_dssp HHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT------------------------------------CCEEEE
T ss_pred HHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC------------------------------------CCEEEE
Confidence 3455666666 67899999999999999999998732 238999
Q ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEe
Q psy15878 246 HADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLC 325 (693)
Q Consensus 246 h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~ 325 (693)
||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||.| ..|.+++++
T Consensus 62 hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~----p~~~~~~~qr~GR~~R~g--~~g~~~~~~ 135 (172)
T 1t5i_A 62 HRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM----PEDSDTYLHRVARAGRFG--TKGLAITFV 135 (172)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSC----CSSHHHHHHHHHHHTGGG--CCCEEEEEE
T ss_pred ECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECC----CCCHHHHHHHhcccccCC--CCcEEEEEE
Confidence 99999999999999999999999999999999999999999999885 789999999999999999 689999999
Q ss_pred ccc
Q psy15878 326 KTM 328 (693)
Q Consensus 326 ~~~ 328 (693)
.+.
T Consensus 136 ~~~ 138 (172)
T 1t5i_A 136 SDE 138 (172)
T ss_dssp CSH
T ss_pred cCh
Confidence 875
No 59
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.82 E-value=3.9e-20 Score=178.20 Aligned_cols=124 Identities=19% Similarity=0.311 Sum_probs=95.0
Q ss_pred ChhhHHHHHh---cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEE
Q psy15878 168 GPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAY 244 (693)
Q Consensus 168 ~~~~l~~l~~---~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~ 244 (693)
+.+.+.+++. +++++||||++++.|+.++..|...+ .++.+
T Consensus 32 K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g------------------------------------~~~~~ 75 (185)
T 2jgn_A 32 KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG------------------------------------YACTS 75 (185)
T ss_dssp HHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT------------------------------------CCEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC------------------------------------CceEE
Confidence 3455666666 57899999999999999999998732 23999
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEE
Q psy15878 245 HHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIML 324 (693)
Q Consensus 245 ~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l 324 (693)
+||+++..+|..+++.|++|.++|||||+++++|+|+|++++||+++. |.+..+|.||+||+||.| ..|.|+++
T Consensus 76 lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~----p~s~~~~~Qr~GR~~R~g--~~g~~~~~ 149 (185)
T 2jgn_A 76 IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL----PSDIEEYVHRIGRTGRVG--NLGLATSF 149 (185)
T ss_dssp EC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSC----CSSHHHHHHHHTTBCCTT--SCEEEEEE
T ss_pred EeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCC----CCCHHHHHHHccccCCCC--CCcEEEEE
Confidence 999999999999999999999999999999999999999999999875 779999999999999999 68999999
Q ss_pred ecccccHHHH
Q psy15878 325 CKTMQDFLRF 334 (693)
Q Consensus 325 ~~~~~~~~~~ 334 (693)
+++. +...+
T Consensus 150 ~~~~-~~~~~ 158 (185)
T 2jgn_A 150 FNER-NINIT 158 (185)
T ss_dssp ECGG-GGGGH
T ss_pred Echh-hHHHH
Confidence 9877 54443
No 60
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.82 E-value=7.2e-20 Score=189.18 Aligned_cols=126 Identities=19% Similarity=0.323 Sum_probs=107.4
Q ss_pred CChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEE
Q psy15878 167 SGPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAY 244 (693)
Q Consensus 167 ~~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~ 244 (693)
.+.+.+..++. .++++||||+|++.++.++..|...+ ..+.+
T Consensus 14 ~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g------------------------------------~~~~~ 57 (300)
T 3i32_A 14 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG------------------------------------HPAQA 57 (300)
T ss_dssp SHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTT------------------------------------CCEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC------------------------------------CCEEE
Confidence 34566677766 78999999999999999999997733 33999
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEE
Q psy15878 245 HHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIML 324 (693)
Q Consensus 245 ~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l 324 (693)
+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+++. |.+..+|.||+|||||.| ..|.|+++
T Consensus 58 lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~----p~s~~~y~Qr~GRagR~g--~~G~~i~l 131 (300)
T 3i32_A 58 LHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRM----PDRAEAYQHRSGRTGRAG--RGGRVVLL 131 (300)
T ss_dssp ECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSC----CSSTTHHHHHHTCCC-------CEEEEE
T ss_pred EeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCC----CCCHHHHHHHccCcCcCC--CCceEEEE
Confidence 999999999999999999999999999999999999999999999885 779999999999999999 67999999
Q ss_pred ecccccHHHHH
Q psy15878 325 CKTMQDFLRFS 335 (693)
Q Consensus 325 ~~~~~~~~~~~ 335 (693)
+++. +...+.
T Consensus 132 ~~~~-e~~~~~ 141 (300)
T 3i32_A 132 YGPR-ERRDVE 141 (300)
T ss_dssp ECSS-THHHHH
T ss_pred eChH-HHHHHH
Confidence 9887 655443
No 61
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=176.01 Aligned_cols=119 Identities=21% Similarity=0.287 Sum_probs=103.6
Q ss_pred ChhhHHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEc
Q psy15878 168 GPDAVLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHH 246 (693)
Q Consensus 168 ~~~~l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h 246 (693)
+.+.+.+++. .++++||||+++..++.++..|...+. .+..+|
T Consensus 42 K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~------------------------------------~~~~lh 85 (191)
T 2p6n_A 42 KMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGV------------------------------------EAVAIH 85 (191)
T ss_dssp HHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTC------------------------------------CEEEEC
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCC------------------------------------cEEEEe
Confidence 3455666666 577999999999999999999976332 389999
Q ss_pred CCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEec
Q psy15878 247 ADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCK 326 (693)
Q Consensus 247 ~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~ 326 (693)
|++++.+|..+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||.| ..|.++++++
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~----p~~~~~~~qr~GR~gR~g--~~g~~i~l~~ 159 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDM----PEEIENYVHRIGRTGCSG--NTGIATTFIN 159 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSC----CSSHHHHHHHHTTSCC-----CCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCC----CCCHHHHHHHhCccccCC--CCcEEEEEEc
Confidence 9999999999999999999999999999999999999999999875 789999999999999999 6899999998
Q ss_pred cc
Q psy15878 327 TM 328 (693)
Q Consensus 327 ~~ 328 (693)
+.
T Consensus 160 ~~ 161 (191)
T 2p6n_A 160 KA 161 (191)
T ss_dssp TT
T ss_pred Cc
Confidence 65
No 62
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.81 E-value=2e-19 Score=206.37 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=99.7
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||||+|++.|+.++..|.+.+. .+.++||++++.+|..+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi------------------------------------~~~~lh~~~~~~~R~~~ 481 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGI------------------------------------RARYLHHELDAFKRQAL 481 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC------------------------------------CEEEECTTCCHHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCC------------------------------------CceeecCCCCHHHHHHH
Confidence 788999999999999999999987333 28889999999999999
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCC-CccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVG-RDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g-~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
++.|++|.++|||||+++++|+|+|++++||+++.+- .-|.|..+|+||+|||||.+ .|.|++++++.
T Consensus 482 ~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~ 550 (664)
T 1c4o_A 482 IRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---RGEVWLYADRV 550 (664)
T ss_dssp HHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST---TCEEEEECSSC
T ss_pred HHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC---CCEEEEEEcCC
Confidence 9999999999999999999999999999999876310 01678999999999999997 89999999876
No 63
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.80 E-value=4.7e-19 Score=203.18 Aligned_cols=112 Identities=22% Similarity=0.249 Sum_probs=99.5
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||||+|++.|+.++..|.+.+. .+.++||++++.+|..+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi------------------------------------~~~~lh~~~~~~~R~~~ 487 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGI------------------------------------KVNYLHSEIKTLERIEI 487 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC------------------------------------CEEEECTTCCHHHHHHH
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCC------------------------------------CeEEEeCCCCHHHHHHH
Confidence 678999999999999999999987333 28889999999999999
Q ss_pred HHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCC-ccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGR-DFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~-~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
++.|++|.++|||||+++++|+|+|++++||+++.+-. -|.|..+|.||+|||||.+ .|.|++++++.
T Consensus 488 l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~ 556 (661)
T 2d7d_A 488 IRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKI 556 (661)
T ss_dssp HHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSC
T ss_pred HHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCC
Confidence 99999999999999999999999999999998763110 1679999999999999985 89999999876
No 64
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.79 E-value=6e-19 Score=197.29 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=98.1
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
++.++||||+++..++.++..|... ...++..+||+++..+|..+
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~-----------------------------------~~~~~~~~~g~~~~~~R~~~ 384 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKE-----------------------------------LNTEVPFLYGELSKKERDDI 384 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHH-----------------------------------HTCCCCEEETTSCHHHHHHH
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHh-----------------------------------hCCCeEEEECCCCHHHHHHH
Confidence 7889999999999999998888752 01348889999999999999
Q ss_pred HHHHhCC-CCe-EEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHH
Q psy15878 258 EEAYLAG-TLQ-IICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFS 335 (693)
Q Consensus 258 e~~f~~g-~i~-VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~ 335 (693)
++.|++| ..+ +|+||+++++|+|+|++++||.++. |.++..|.||+||++|.|......+|.++....-.+.+.
T Consensus 385 ~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~----~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~ 460 (500)
T 1z63_A 385 ISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR----WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKID 460 (500)
T ss_dssp HHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSC----CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTH
T ss_pred HHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCC----CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHH
Confidence 9999988 555 7999999999999999999999874 779999999999999999766666677776652223334
Q ss_pred HHHhCCC
Q psy15878 336 SMMNAGP 342 (693)
Q Consensus 336 ~~l~~~~ 342 (693)
..+....
T Consensus 461 ~~~~~K~ 467 (500)
T 1z63_A 461 QLLAFKR 467 (500)
T ss_dssp HHHTTCS
T ss_pred HHHHHHH
Confidence 4444443
No 65
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.64 E-value=1.9e-20 Score=177.99 Aligned_cols=124 Identities=20% Similarity=0.343 Sum_probs=107.0
Q ss_pred ChhhHHHHHh--cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEE
Q psy15878 168 GPDAVLHLVQ--GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYH 245 (693)
Q Consensus 168 ~~~~l~~l~~--~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~ 245 (693)
+.+.+.+++. .++++||||+++..|+.++..|...+ .++.++
T Consensus 17 k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~------------------------------------~~~~~~ 60 (170)
T 2yjt_D 17 KTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAG------------------------------------INNCYL 60 (170)
Confidence 3344555555 56899999999999999999887621 348899
Q ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEe
Q psy15878 246 HADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLC 325 (693)
Q Consensus 246 h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~ 325 (693)
||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+++. |.+..+|.||+||+||.| ..|.+++++
T Consensus 61 ~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~----p~~~~~~~qr~GR~~R~g--~~g~~~~~~ 134 (170)
T 2yjt_D 61 EGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDM----PRSGDTYLHRIGRTARAG--RKGTAISLV 134 (170)
Confidence 99999999999999999999999999999999999999999999874 779999999999999998 689999998
Q ss_pred cccccHHHH
Q psy15878 326 KTMQDFLRF 334 (693)
Q Consensus 326 ~~~~~~~~~ 334 (693)
... +...+
T Consensus 135 ~~~-~~~~~ 142 (170)
T 2yjt_D 135 EAH-DHLLL 142 (170)
Confidence 877 54443
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.75 E-value=3.7e-17 Score=181.53 Aligned_cols=116 Identities=22% Similarity=0.268 Sum_probs=99.5
Q ss_pred hhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEE
Q psy15878 169 PDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAY 244 (693)
Q Consensus 169 ~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~ 244 (693)
...+.+.+. .+.|+||||+|+..++.++..|.+.++. +..
T Consensus 460 ~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~------------------------------------~~v 503 (822)
T 3jux_A 460 YEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIP------------------------------------HQV 503 (822)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCC------------------------------------CEE
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCC------------------------------------EEE
Confidence 344455443 6889999999999999999999885444 788
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCeEEEecchhhcccCCC--------CcEEEEecCcCCCccCCHHHHHHHhhccCCCCCC
Q psy15878 245 HHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLP--------AQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQ 316 (693)
Q Consensus 245 ~h~~l~~~eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp--------~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d 316 (693)
+||+....+|..+..+++.| .|+|||+++++|+|++ +..+||++.. |-|...|.||+||+||.|
T Consensus 504 Lhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~----Pes~r~y~qriGRTGRqG-- 575 (822)
T 3jux_A 504 LNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTER----HESRRIDNQLRGRAGRQG-- 575 (822)
T ss_dssp ECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSC----CSSHHHHHHHHTTSSCSS--
T ss_pred eeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCC----CCCHHHHHHhhCccccCC--
Confidence 99998888888888888877 5999999999999998 5679999875 789999999999999999
Q ss_pred CCCcEEEEeccc
Q psy15878 317 ESGESIMLCKTM 328 (693)
Q Consensus 317 ~~G~~i~l~~~~ 328 (693)
.+|.++.+++..
T Consensus 576 ~~G~a~~fvsle 587 (822)
T 3jux_A 576 DPGESIFFLSLE 587 (822)
T ss_dssp CCCEEEEEEETT
T ss_pred CCeeEEEEechh
Confidence 799999998876
No 67
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.70 E-value=1.7e-16 Score=182.03 Aligned_cols=111 Identities=13% Similarity=0.034 Sum_probs=97.7
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||||+++..++.++..|...++ .+..+||+++..+|..+
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~------------------------------------~~~~l~G~~~~~~R~~~ 458 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRY------------------------------------LYVRLDGTMSIKKRAKI 458 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTC------------------------------------CEEEECSSCCHHHHHHH
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCC------------------------------------CEEEEeCCCCHHHHHHH
Confidence 578999999999999999988876333 38889999999999999
Q ss_pred HHHHhCCCC---eEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAGTL---QIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~i---~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
.+.|++|.. .+|++|.+++.|+|++++++||.++. |.++..+.|++||++|.|+.....+|.++...
T Consensus 459 i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~----~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 459 VERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP----DWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp HHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSC----CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred HHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECC----CCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 999999875 48999999999999999999999874 78999999999999999977666777777665
No 68
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.2e-16 Score=188.00 Aligned_cols=111 Identities=16% Similarity=0.106 Sum_probs=98.4
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||||..+..+..++..|...++ .+..+||+++..+|..+
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g~------------------------------------~~~~i~G~~~~~eR~~~ 614 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKGI------------------------------------NFQRLDGTVPSAQRRIS 614 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHTC------------------------------------CCEEESTTSCHHHHHHH
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCCC------------------------------------CEEEEeCCCCHHHHHHH
Confidence 678999999999999999998876332 38899999999999999
Q ss_pred HHHHhCCCC---eEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 258 EEAYLAGTL---QIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 258 e~~f~~g~i---~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
++.|++|.. .+|++|.+++.|+|+|++++||.++. +.++..+.|++||++|.|+.....+|.++...
T Consensus 615 i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~----~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 615 IDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDS----DWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp HHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSC----CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred HHHhhCCCCCceEEEEecccccCCCCccccceEEEecC----CCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 999998654 59999999999999999999999874 67999999999999999988778888887766
No 69
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=99.67 E-value=3.5e-17 Score=171.79 Aligned_cols=211 Identities=14% Similarity=-0.003 Sum_probs=166.0
Q ss_pred CccEEecHHHHHHHHcCCChhHHHHHHHhhhhhhccccccccccEEEeeccCCccCCCCCccccccchhhHhhhcChhHH
Q psy15878 419 AGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTL 498 (693)
Q Consensus 419 ~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~~~~~~l~~~l~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 498 (693)
++.+.+|++|+++|++||++.|+..|.+.++... ...+.|++++.+.+|. ++ .++.+....+.+|
T Consensus 6 ~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~---~~~~lL~ils~a~Ef~-----~i--~vR~~E~~~l~~L----- 70 (328)
T 3im1_A 6 TEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTS---TLKNMLYVLSTAVEFE-----SV--PLRKGDRALLVKL----- 70 (328)
T ss_dssp CCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTC---CHHHHHHHHHTCGGGG-----GS--CCCTTHHHHHHHH-----
T ss_pred CCCccCCchhHHHHHHCCCHHHHHHHHHHhcccC---CHHHHHHHhccHHHHH-----hc--ccCcchHHHHHHH-----
Confidence 3459999999999999999999999999887653 3567788888877664 22 2344433333221
Q ss_pred HHHHHcCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy15878 499 RVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCE 578 (693)
Q Consensus 499 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~ 578 (693)
.+.++++.. ..+.+. -...|+.++|++|+++.++.. .| .+|...+.++|.|++.++.++|.
T Consensus 71 --~~~~~~~~~-----~~~~~~------~~~~K~~lLLqa~isr~~l~~---~l---~~D~~~V~~~a~rLl~al~di~~ 131 (328)
T 3im1_A 71 --SKRLPLRFP-----EHTSSG------SVSFKVFLLLQAYFSRLELPV---DF---QNDLKDILEKVVPLINVVVDILS 131 (328)
T ss_dssp --HTTSSSCCC-----TTSCSS------SHHHHHHHHHHHHHHTCCCCH---HH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHhCCCccc-----ccCCCC------CHHHHHHHHHHHHHCCCCCCh---HH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222100 001111 136788899999999998765 23 78999999999999999999999
Q ss_pred hCcchhhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHH
Q psy15878 579 ELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLIS 658 (693)
Q Consensus 579 ~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~ 658 (693)
..|+ .....+..+.+++.+|++++..+|.|+||||+.++++|.++|++|+++|+.++++++..++ |++++.+++|.+
T Consensus 132 ~~g~--~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll-~~~~~~~~~v~~ 208 (328)
T 3im1_A 132 ANGY--LNATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEIL-TLTDSQLAQVAA 208 (328)
T ss_dssp HTTB--TTHHHHHHHHHHHHHTSCTTSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHC-CCCHHHHHHHHH
T ss_pred cCCc--HHHHHHHHHHHHHHhhcCCCCCceeCCCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHh-CCCHHHHHHHHH
Confidence 9994 3356788999999999999999999999999999999999999999999999999999977 899999999999
Q ss_pred HHHhhhhh
Q psy15878 659 AAKLHFIT 666 (693)
Q Consensus 659 ~a~~~~~~ 666 (693)
.++++...
T Consensus 209 ~~~~~P~l 216 (328)
T 3im1_A 209 FVNNYPNV 216 (328)
T ss_dssp HHHHCCCE
T ss_pred HHHhCCCE
Confidence 99887653
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.64 E-value=2.3e-15 Score=178.77 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=58.3
Q ss_pred HHHHHHHHHhCCCCeEEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCC--CCCcEEEEecc
Q psy15878 253 ERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQ--ESGESIMLCKT 327 (693)
Q Consensus 253 eR~~ve~~f~~g~i~VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d--~~G~~i~l~~~ 327 (693)
+|+.+.+.|++|.++|||+|+.+.+|+|+|.+.++... .|.+...|+|++||+||.+.+ ..|.++-+...
T Consensus 637 ~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tlylD-----kpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 637 YYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLFVD-----KNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp HHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEEEE-----SCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred HHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEEEc-----cCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 58899999999999999999999999999999765543 278899999999999998742 34666666543
No 71
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=99.64 E-value=2.4e-16 Score=166.01 Aligned_cols=208 Identities=11% Similarity=0.009 Sum_probs=136.0
Q ss_pred ccEEecHHHHHHHHcCCChhHHHHHHHhhhhhhccccccccccEEEeeccCCccCCCCCccccccchhhHhhhcChhHHH
Q psy15878 420 GHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLR 499 (693)
Q Consensus 420 ~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~~~~~~~l~~~l~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 499 (693)
|.+.+|++|+++|++||++.|+..|...++... ...+.|++++.+.+|. ++ .++.+....+.+|
T Consensus 11 g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~---~~~~lL~ils~a~EF~-----~i--~vR~~E~~~l~~L------ 74 (339)
T 2q0z_X 11 MDVAPLNLGMIAAYYYINYTTIELFSMSLNAKT---KVRGLIEIISNAAEYE-----NI--PIRHHEDNLLRQL------ 74 (339)
T ss_dssp --------------------------------C---CHHHHHHHHHTSGGGT-----TC--CCCTTCHHHHHHH------
T ss_pred ceeccCcHHHHHHHHCCCHHHHHHHHHHhcccC---CHHHHHHHHhchHHHh-----cC--CCCcchHHHHHHH------
Confidence 458999999999999999999999998887643 3567788888877774 22 3344443333222
Q ss_pred HHHHcCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhh
Q psy15878 500 VAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEE 579 (693)
Q Consensus 500 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~ 579 (693)
.+.++++.. .+.+. ....|+.++|++|+++.++. + .| .+|...+.++|.|++.++.++|..
T Consensus 75 -~~~~~~~~~------~~~~~------~~~~K~~lLLqa~isr~~l~-~--~l---~~D~~~V~~~a~RLl~al~di~~~ 135 (339)
T 2q0z_X 75 -AQKVPHKLN------NPKFN------DPHVKTNLLLQAHLSRMQLS-A--EL---QSDTEEILSKAIRLIQACVDVLSS 135 (339)
T ss_dssp -HHHSSSCCS------SCCTT------CHHHHHHHHHHHHHTTCCCC-H--HH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHhCCCccc------cCCCC------CHHHHHHHHHHHHHcCCCCC-h--HH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222322210 01111 12568899999999999886 3 55 789999999999999999999999
Q ss_pred Ccchhh-hHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHH
Q psy15878 580 LPELWC-YKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLIS 658 (693)
Q Consensus 580 ~~~~~~-~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~ 658 (693)
.| |. ....+..|.+++.+|++++..+|+|+||||+.++++|.++|++|+++|..++++++...+ |+++...++|.+
T Consensus 136 ~g--~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll-~l~~~~~~~i~~ 212 (339)
T 2q0z_X 136 NG--WLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALL-QLTDSQIADVAR 212 (339)
T ss_dssp TT--BHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHH-CCCHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHHHHHhcCCCCCceecCCCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHH-CCCHHHHHHHHH
Confidence 99 54 456788999999999999999999999999999999999999999999999999999988 788888888888
Q ss_pred HHHhhhh
Q psy15878 659 AAKLHFI 665 (693)
Q Consensus 659 ~a~~~~~ 665 (693)
.++++..
T Consensus 213 ~~~~~P~ 219 (339)
T 2q0z_X 213 FCNRYPN 219 (339)
T ss_dssp HHTTSCC
T ss_pred HHHhCCc
Confidence 8877654
No 72
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.47 E-value=1.2e-13 Score=140.66 Aligned_cols=120 Identities=14% Similarity=0.117 Sum_probs=88.3
Q ss_pred hhhHHHHHh----cCCceEEEeCChHHHHHHHHHhhhc-cCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceE
Q psy15878 169 PDAVLHLVQ----GNLMVLIFCSSKIACSNLALRLQFD-RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVA 243 (693)
Q Consensus 169 ~~~l~~l~~----~~~~vLVF~~sr~~~e~la~~L~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~ 243 (693)
...+.+++. .+.++||||+++..++.++..|... + ..+.
T Consensus 98 ~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g------------------------------------~~~~ 141 (271)
T 1z5z_A 98 MIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN------------------------------------TEVP 141 (271)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHC------------------------------------SCCC
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcC------------------------------------CcEE
Confidence 344444444 7899999999999999999888762 2 2378
Q ss_pred EEcCCCCHHHHHHHHHHHhCC-CCe-EEEecchhhcccCCCCcEEEEecCcCCCccCCHHHHHHHhhccCCCCCCCCCcE
Q psy15878 244 YHHADLTAGERRLIEEAYLAG-TLQ-IICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGES 321 (693)
Q Consensus 244 ~~h~~l~~~eR~~ve~~f~~g-~i~-VLvaT~~l~~Gvnlp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~g~d~~G~~ 321 (693)
.+||+++..+|..+.+.|++| ..+ +|+||.++++|+|++++++||+++. |.++..|.|++||++|.|......+
T Consensus 142 ~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~----~wnp~~~~Q~~gR~~R~Gq~~~v~v 217 (271)
T 1z5z_A 142 FLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR----WWNPAVEDQATDRVYRIGQTRNVIV 217 (271)
T ss_dssp EECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSC----CSCTTTC--------------CCEE
T ss_pred EEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECC----CCChhHHHHHHHhccccCCCCceEE
Confidence 899999999999999999998 777 7899999999999999999999885 7799999999999999997666666
Q ss_pred EEEeccc
Q psy15878 322 IMLCKTM 328 (693)
Q Consensus 322 i~l~~~~ 328 (693)
|.++...
T Consensus 218 ~~li~~~ 224 (271)
T 1z5z_A 218 HKLISVG 224 (271)
T ss_dssp EEEEETT
T ss_pred EEEeeCC
Confidence 7777665
No 73
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.28 E-value=1.2e-12 Score=131.48 Aligned_cols=113 Identities=15% Similarity=0.143 Sum_probs=89.7
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|.++.+++++...++++..++|+............+++|+|+||+++..++.. ....+.++++||+||+|.+.+.
T Consensus 114 L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~l~~~ 191 (242)
T 3fe2_A 114 LAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC--GKTNLRRTTYLVLDEADRMLDM 191 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH--TSCCCTTCCEEEETTHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--CCCCcccccEEEEeCHHHHhhh
Confidence 57899999999999999999999988654444343346789999999998766654 3346789999999999999888
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHh
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTF 118 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~ 118 (693)
+++..++.++..+ +++.|+++||||+++ ...+++.
T Consensus 192 ~~~~~~~~i~~~~---~~~~q~~~~SAT~~~~~~~~~~~ 227 (242)
T 3fe2_A 192 GFEPQIRKIVDQI---RPDRQTLMWSATWPKEVRQLAED 227 (242)
T ss_dssp TCHHHHHHHHTTS---CSSCEEEEEESCCCHHHHHHHHH
T ss_pred CcHHHHHHHHHhC---CccceEEEEEeecCHHHHHHHHH
Confidence 8999888876654 578899999999985 4555543
No 74
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.25 E-value=3.1e-12 Score=130.10 Aligned_cols=113 Identities=13% Similarity=0.096 Sum_probs=88.6
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|+++.+++++...+..+..+.|+............+++|+|+||+++...++.. ....+.++++||+||+|++.+.
T Consensus 138 La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~-~~~~~~~l~~lViDEah~l~~~ 216 (262)
T 3ly5_A 138 LAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT-PGFMYKNLQCLVIDEADRILDV 216 (262)
T ss_dssp HHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHC-TTCCCTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHcc-CCcccccCCEEEEcChHHHhhh
Confidence 688999999999988999999999876543333333356899999999986655432 1235689999999999999888
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST 117 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~ 117 (693)
+++..++.++..+ +..+|+++||||+++ .+++++
T Consensus 217 ~~~~~l~~i~~~~---~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 217 GFEEELKQIIKLL---PTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp TCHHHHHHHHHHS---CSSSEEEEECSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHhC---CCCCeEEEEEecCCHHHHHHHH
Confidence 8999998887765 567899999999985 555554
No 75
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.22 E-value=7.7e-12 Score=124.24 Aligned_cols=111 Identities=16% Similarity=0.095 Sum_probs=82.5
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
||.|.+++++++. ..++++..+.|+...........++++|+|+||+++..++.. ....+.++++||+||||.+.+.
T Consensus 106 L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~ 182 (228)
T 3iuy_A 106 LALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN--NSVNLRSITYLVIDEADKMLDM 182 (228)
T ss_dssp HHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT--TCCCCTTCCEEEECCHHHHHHT
T ss_pred HHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcCcccceEEEEECHHHHhcc
Confidence 5778888888875 457888888888765555444447899999999998765544 3345789999999999999888
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST 117 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~ 117 (693)
+++..+..++..+ .++.|+++||||+++ ..+++.
T Consensus 183 ~~~~~~~~i~~~~---~~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 183 EFEPQIRKILLDV---RPDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp TCHHHHHHHHHHS---CSSCEEEEEESCCCHHHHHHHH
T ss_pred chHHHHHHHHHhC---CcCCeEEEEEeeCCHHHHHHHH
Confidence 8999998887765 567899999999985 344443
No 76
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.22 E-value=1.3e-11 Score=120.51 Aligned_cols=106 Identities=20% Similarity=0.160 Sum_probs=82.6
Q ss_pred ChhhHHHHHHHHhhhh-CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEF-KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
|+.|.++.+++++... ++++..++|+............+++|+|+||+++..++.+ ....+.++++||+||+|.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~ 160 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHTS
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc--CCcCcccCCEEEEEChHHhHh
Confidence 5778888999888776 7889888887653333333346789999999998665554 234578999999999999988
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCCC
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIGN 111 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~n 111 (693)
.+++..++.++..+ +++.|+++||||+++
T Consensus 161 ~~~~~~l~~i~~~~---~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 161 QDFVQIMEDIILTL---PKNRQILLYSATFPL 189 (206)
T ss_dssp TTTHHHHHHHHHHS---CTTCEEEEEESCCCH
T ss_pred hCcHHHHHHHHHhC---CccceEEEEEeeCCH
Confidence 78888888877654 457899999999984
No 77
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.19 E-value=2.3e-11 Score=120.36 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=82.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|.++.+++++...++++..+.|+.......... ..++|+|+||+++..++.. ....+.++++||+||||.+.++
T Consensus 94 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~ 170 (224)
T 1qde_A 94 LALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSS 170 (224)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECC----------C-TTCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHT
T ss_pred HHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-CCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEcChhHHhhh
Confidence 577889999999888899999999887654444333 5699999999997665554 3345688999999999998887
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHH-Hhhc
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALS-TFIE 120 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la-~~l~ 120 (693)
+++..+..++..+ +++.|+++||||+++ ..++. .|++
T Consensus 171 ~~~~~l~~i~~~~---~~~~~~i~lSAT~~~~~~~~~~~~~~ 209 (224)
T 1qde_A 171 GFKEQIYQIFTLL---PPTTQVVLLSATMPNDVLEVTTKFMR 209 (224)
T ss_dssp TCHHHHHHHHHHS---CTTCEEEEEESSCCHHHHHHHHHHCS
T ss_pred hhHHHHHHHHHhC---CccCeEEEEEeecCHHHHHHHHHHCC
Confidence 8888887776654 567899999999986 34444 3443
No 78
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.19 E-value=1.1e-11 Score=122.38 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=81.0
Q ss_pred ChhhHHHHHHHHhhhh----CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 1 MVHEKYQSLAKAAEEF----KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~----~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
|+.|.++.+++++... ++++..+.|+............+++|+|+||+++..+++. ....+.++++||+||+|.
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~ 161 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE--QALDVHTAHILVVDEADL 161 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT--TCCCGGGCCEEEECSHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc--CCCCcCcceEEEEcCchH
Confidence 5788899998887766 7888888887643222222235789999999998766554 234568999999999999
Q ss_pred cCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCC
Q psy15878 77 LNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN 111 (693)
Q Consensus 77 l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n 111 (693)
+.+.+++..+..++..+ ++++|+++||||+++
T Consensus 162 ~~~~~~~~~l~~i~~~~---~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 162 MLDMGFITDVDQIAARM---PKDLQMLVFSATIPE 193 (219)
T ss_dssp HHHTTCHHHHHHHHHTS---CTTCEEEEEESCCCG
T ss_pred HhhhChHHHHHHHHHhC---CcccEEEEEecCCCH
Confidence 98878888877776654 567899999999985
No 79
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.18 E-value=2.6e-11 Score=121.23 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=79.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccC-CCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLN-KKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~-~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
|+.|.++.+++++...++.+..+.|+............ .++|+|+||+++..++.+ ....+.++++||+||||.+.+
T Consensus 110 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~ 187 (237)
T 3bor_A 110 LAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR--RYLSPKWIKMFVLDEADEMLS 187 (237)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT--TSSCSTTCCEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh--CCcCcccCcEEEECCchHhhc
Confidence 57889999999988888999888887654444333323 489999999997665544 223568899999999999887
Q ss_pred CCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH
Q psy15878 80 PQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST 117 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~ 117 (693)
.+++..+..++..+ +.+.|+++||||+++ ..++++
T Consensus 188 ~~~~~~l~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~ 223 (237)
T 3bor_A 188 RGFKDQIYEIFQKL---NTSIQVVLLSATMPTDVLEVTK 223 (237)
T ss_dssp TTCHHHHHHHHHHS---CTTCEEEEECSSCCHHHHHHHH
T ss_pred cCcHHHHHHHHHhC---CCCCeEEEEEEecCHHHHHHHH
Confidence 77888887776654 567899999999985 444443
No 80
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.18 E-value=1.4e-11 Score=124.57 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=88.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|.++.+++++...++++..+.|+............+++|+|+||+++..+++. ....+.++++||+||||++.+.
T Consensus 112 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~~ 189 (253)
T 1wrb_A 112 LAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK--NKISLEFCKYIVLDEADRMLDM 189 (253)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT--TSBCCTTCCEEEEETHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc--CCCChhhCCEEEEeCHHHHHhC
Confidence 57889999999988888999999988654444344446789999999998766654 2235689999999999999888
Q ss_pred CChHHHHHHHHHHhcc-CCCceEEEEcCcCCC-HHHHHH
Q psy15878 81 QRGPILECVVSKVLYL-KKSIQIFAMSATIGN-INALST 117 (693)
Q Consensus 81 ~rg~~le~il~~l~~~-~~~~qii~lSATl~n-~~~la~ 117 (693)
+++..+..++.++... ..+.|+++||||+++ ..++++
T Consensus 190 ~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~ 228 (253)
T 1wrb_A 190 GFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAA 228 (253)
T ss_dssp TCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHH
T ss_pred chHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHH
Confidence 8999998888754321 126899999999985 455554
No 81
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.17 E-value=3e-10 Score=128.93 Aligned_cols=76 Identities=7% Similarity=0.060 Sum_probs=57.2
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccch-HHHHhchh----ccCCCC---cccEEEEe
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKG-SKLIGSLI----QENRID---EIGLIVID 72 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~-~~Ll~~l~----~~~~l~---~i~lvVvD 72 (693)
||.|.++++.+++..+|++|..+.|++.. ...+....+||+|+||+.+ ..+++.-. ....++ ++.++|+|
T Consensus 132 LA~Qdae~m~~l~~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIID 209 (997)
T 2ipc_A 132 LARRDAEWMGPVYRGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIID 209 (997)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEET
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEe
Confidence 68899999999999999999999998652 2222225799999999997 34444322 122456 89999999
Q ss_pred cccccC
Q psy15878 73 EFHMLN 78 (693)
Q Consensus 73 E~H~l~ 78 (693)
|+|.+.
T Consensus 210 EaDsmL 215 (997)
T 2ipc_A 210 EVDSIL 215 (997)
T ss_dssp THHHHT
T ss_pred chHHHH
Confidence 999665
No 82
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.17 E-value=1.5e-11 Score=122.31 Aligned_cols=111 Identities=18% Similarity=0.142 Sum_probs=83.7
Q ss_pred ChhhHHHHHHHHhhhh-CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEF-KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
|+.|.++.+++++... ++++..+.|+........ ...+++|+|+||+++..+++. ....+.++++||+||+|.+.+
T Consensus 104 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~Iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~ 180 (230)
T 2oxc_A 104 IAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKT-RLKKCHIAVGSPGRIKQLIEL--DYLNPGSIRLFILDEADKLLE 180 (230)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHH-HTTSCSEEEECHHHHHHHHHT--TSSCGGGCCEEEESSHHHHHS
T ss_pred HHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHH-hccCCCEEEECHHHHHHHHhc--CCcccccCCEEEeCCchHhhc
Confidence 5788899999987665 889999998765332222 236799999999998766553 233568899999999999987
Q ss_pred CC-ChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHHhh
Q psy15878 80 PQ-RGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI 119 (693)
Q Consensus 80 ~~-rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~~l 119 (693)
.+ ++..+..++..+ +...|+++||||+++ ++.+++
T Consensus 181 ~~~~~~~~~~i~~~~---~~~~~~l~lSAT~~~--~~~~~~ 216 (230)
T 2oxc_A 181 EGSFQEQINWIYSSL---PASKQMLAVSATYPE--FLANAL 216 (230)
T ss_dssp TTSSHHHHHHHHHHS---CSSCEEEEEESCCCH--HHHHHH
T ss_pred CcchHHHHHHHHHhC---CCCCeEEEEEeccCH--HHHHHH
Confidence 65 888888777654 467899999999874 344444
No 83
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=123.65 Aligned_cols=114 Identities=11% Similarity=0.121 Sum_probs=87.3
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|.++.+++++...++++..+.|+............+++|+|+||+++..++... ....+.++++||+||||.+.+.
T Consensus 123 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~l~~~~~lViDEah~l~~~ 201 (249)
T 3ber_A 123 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT-KGFNLRALKYLVMDEADRILNM 201 (249)
T ss_dssp HHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHS-TTCCCTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CCcCccccCEEEEcChhhhhcc
Confidence 578899999999988899999999886543333333468999999999976655432 1224689999999999998887
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHh
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTF 118 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~ 118 (693)
+++..+..++..+ +++.|+++||||+++ ..+++++
T Consensus 202 ~~~~~l~~i~~~~---~~~~~~l~~SAT~~~~v~~~~~~ 237 (249)
T 3ber_A 202 DFETEVDKILKVI---PRDRKTFLFSATMTKKVQKLQRA 237 (249)
T ss_dssp TCHHHHHHHHHSS---CSSSEEEEEESSCCHHHHHHHHH
T ss_pred ChHHHHHHHHHhC---CCCCeEEEEeccCCHHHHHHHHH
Confidence 8888888776643 567899999999985 4555543
No 84
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.13 E-value=2.8e-11 Score=120.87 Aligned_cols=113 Identities=18% Similarity=0.270 Sum_probs=85.2
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|.++.+++++...++++..++|+......... ..+++|+|+||+++..++.+. ....+.++++||+||+|++.++
T Consensus 109 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~~~~~ 186 (236)
T 2pl3_A 109 LAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER-INNINILVCTPGRLLQHMDET-VSFHATDLQMLVLDEADRILDM 186 (236)
T ss_dssp HHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH-HTTCSEEEECHHHHHHHHHHC-SSCCCTTCCEEEETTHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh-CCCCCEEEECHHHHHHHHHhc-CCcccccccEEEEeChHHHhcC
Confidence 57889999999988888999999988654333333 368999999999976555431 1234688999999999999887
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHh
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTF 118 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~ 118 (693)
+++..+..++..+ +++.|+++||||+++ ..++++.
T Consensus 187 ~~~~~~~~i~~~~---~~~~~~l~~SAT~~~~~~~~~~~ 222 (236)
T 2pl3_A 187 GFADTMNAVIENL---PKKRQTLLFSATQTKSVKDLARL 222 (236)
T ss_dssp TTHHHHHHHHHTS---CTTSEEEEEESSCCHHHHHHHHH
T ss_pred CcHHHHHHHHHhC---CCCCeEEEEEeeCCHHHHHHHHH
Confidence 8888888776654 567899999999985 5555553
No 85
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.12 E-value=3.2e-11 Score=117.70 Aligned_cols=112 Identities=15% Similarity=0.114 Sum_probs=83.2
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|.++.+++++.. +++..+.|+.+..........+++|+|+||+++..+++. ....+.++++||+||+|.+.+.
T Consensus 84 L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 84 LALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--GVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH--TSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc--CCcchhhceEEEEEChhHhhcc
Confidence 467888888887653 677888887654333333336799999999998766654 3345789999999999998877
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHhh
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTFI 119 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~l 119 (693)
+++..++.++..+ +++.|+++||||+++ .+++++++
T Consensus 160 ~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~ 196 (207)
T 2gxq_A 160 GFEEEVEALLSAT---PPSRQTLLFSATLPSWAKRLAERY 196 (207)
T ss_dssp TCHHHHHHHHHTS---CTTSEEEEECSSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHhC---CccCeEEEEEEecCHHHHHHHHHH
Confidence 8888888776543 567899999999985 55665543
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.07 E-value=4.2e-11 Score=120.29 Aligned_cols=111 Identities=16% Similarity=0.098 Sum_probs=76.8
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCcc-ccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPT-KRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~-~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
|+.|.++.+++++...++++..+.|+....... .....+++|+|+||+++..+++.......+.++++||+||||.+.+
T Consensus 110 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~ 189 (245)
T 3dkp_A 110 LASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFE 189 (245)
T ss_dssp HHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcc
Confidence 578999999999888899988887764321111 1123678999999999877776532234578999999999999876
Q ss_pred CCChHHHHHHHHHHhcc-CCCceEEEEcCcCCC
Q psy15878 80 PQRGPILECVVSKVLYL-KKSIQIFAMSATIGN 111 (693)
Q Consensus 80 ~~rg~~le~il~~l~~~-~~~~qii~lSATl~n 111 (693)
+.+....+.+...+... ..+.|+++||||+++
T Consensus 190 ~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~ 222 (245)
T 3dkp_A 190 DGKTGFRDQLASIFLACTSHKVRRAMFSATFAY 222 (245)
T ss_dssp HC--CHHHHHHHHHHHCCCTTCEEEEEESSCCH
T ss_pred cccccHHHHHHHHHHhcCCCCcEEEEEeccCCH
Confidence 43332333333333222 457899999999974
No 87
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.02 E-value=1.2e-10 Score=114.88 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=78.9
Q ss_pred ChhhHHHHHHHHhhhh-CcEEEEeeccCCCCCcccccc-CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccC
Q psy15878 1 MVHEKYQSLAKAAEEF-KFYLEEYAGVKGQYPPTKRQL-NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLN 78 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~-~~~v~~~~G~~~~~~~~~~~~-~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~ 78 (693)
|+.|.++.++++.... ++++..++|+........... ..++|+|+||+++..+++. ....+.+++++|+||||.+.
T Consensus 94 L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~ 171 (220)
T 1t6n_A 94 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKML 171 (220)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh--CCCCcccCCEEEEcCHHHHh
Confidence 5778888898887765 789999998764322222221 4579999999998766654 33457899999999999887
Q ss_pred CC-CChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHH
Q psy15878 79 EP-QRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALST 117 (693)
Q Consensus 79 d~-~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~ 117 (693)
+. .+...+..++. ..+++.|+++||||+++ .+++++
T Consensus 172 ~~~~~~~~~~~i~~---~~~~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 172 EQLDMRRDVQEIFR---MTPHEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp SSHHHHHHHHHHHH---TSCSSSEEEEEESCCCTTTHHHHH
T ss_pred cccCcHHHHHHHHH---hCCCcCeEEEEEeecCHHHHHHHH
Confidence 52 33344444433 34567899999999986 555554
No 88
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.02 E-value=2e-10 Score=118.98 Aligned_cols=111 Identities=13% Similarity=0.058 Sum_probs=80.2
Q ss_pred ChhhHHHHHHHHhhhh-CcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCC
Q psy15878 1 MVHEKYQSLAKAAEEF-KFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d 79 (693)
||.|++..++.++... ++++..+.|+....... ...++|+|+||+++..++.+. ....+.++++||+||+|.+.+
T Consensus 174 La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~-~~~~l~~l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 174 LALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIA 249 (300)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTT-CCCCGGGCSEEEETTHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhc-CCCChhhceEEEEeCHHHHhh
Confidence 5789999999987754 67888888775432222 267899999999976665431 223468999999999998876
Q ss_pred -CCChHHHHHHHHHHhccCCCceEEEEcCcCCC-HHHHHHh
Q psy15878 80 -PQRGPILECVVSKVLYLKKSIQIFAMSATIGN-INALSTF 118 (693)
Q Consensus 80 -~~rg~~le~il~~l~~~~~~~qii~lSATl~n-~~~la~~ 118 (693)
..++..+..++. ..++++|++++|||+++ ...++..
T Consensus 250 ~~~~~~~~~~i~~---~~~~~~q~i~~SAT~~~~v~~~a~~ 287 (300)
T 3fmo_B 250 TQGHQDQSIRIQR---MLPRNCQMLLFSATFEDSVWKFAQK 287 (300)
T ss_dssp STTHHHHHHHHHT---TSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred ccCcHHHHHHHHH---hCCCCCEEEEEeccCCHHHHHHHHH
Confidence 456666555443 34678999999999986 5555543
No 89
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=98.71 E-value=9.4e-09 Score=115.51 Aligned_cols=139 Identities=14% Similarity=0.098 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccc
Q psy15878 525 ALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPN 604 (693)
Q Consensus 525 ~~~~~~~~a~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~e 604 (693)
.+.+++.+...+.+||++.....+..-.+|+.+... .+..+.+ .+. ..++..+..+ .++.
T Consensus 36 ay~~Aa~~i~~l~~~i~~~~~~~~~~lp~iG~~~~~-----------~i~~~v~-~g~----~~~~~~~~~~----~~~~ 95 (578)
T 2w9m_A 36 AYRSAARSLEELNEETPELLAREFTGIPKVGKGIAA-----------ELSDFAR-SGT----FAPLEAAAGQ----LPPG 95 (578)
T ss_dssp HHHHHHHHHHSCC----------CCSSTTCCHHHHH-----------HHHHHHH-HSS----CHHHHHHHHH----SCHH
T ss_pred HHHHHHHHHHhCchhhhhhhHhhhhhcCCCChhHHH-----------HHHHHHc-CCh----HHHHHHHhhh----hHHH
Confidence 345566666667888888876554444455543322 1222222 121 1223333332 4778
Q ss_pred hhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH-------HhhhhhhhhhHHHHHHH
Q psy15878 605 LRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA-------KLHFITKMDKVEAMKNL 677 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a-------~~~~~~~~~~~~~~~~~ 677 (693)
+.+|++||||||++|++||++||.|+++|..|...+.+..++|||+|++++|+.++ +++.. .+|+++++.
T Consensus 96 ~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l~~~~~~~~r~~~---~e~~~~~~~ 172 (578)
T 2w9m_A 96 LLDLLGVRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILENVVFLFEARQRQSL---RAGLAVAEE 172 (578)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHHHHHHHCSSEEH---HHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHHHHHHhhcCCeeH---HHHHHHHHH
Confidence 89999999999999999999999999999998655555558999999999998888 45566 999999999
Q ss_pred HHHHHhcCc
Q psy15878 678 IQNLQKNYD 686 (693)
Q Consensus 678 ~~~~~~~~~ 686 (693)
+.+.+++++
T Consensus 173 i~~~l~~~~ 181 (578)
T 2w9m_A 173 LAGALTDLS 181 (578)
T ss_dssp HHHHTGGGC
T ss_pred HHHHHHhCC
Confidence 999999876
No 90
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.70 E-value=1e-08 Score=100.25 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=59.9
Q ss_pred hhh-HHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhc----cCCCCcccEEEEecccc
Q psy15878 2 VHE-KYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQ----ENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 2 ~~e-~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~----~~~l~~i~lvVvDE~H~ 76 (693)
+.| ..+.++++... ++++..+.|+.............++|+|+||+++..++..... ...+.++++||+||+|+
T Consensus 95 ~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~ 173 (216)
T 3b6e_A 95 VEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH 173 (216)
T ss_dssp HHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--
T ss_pred HHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchh
Confidence 445 34456666543 7888888887654444333335789999999998766554321 13468899999999999
Q ss_pred cCCCCC-hHHHHHHHHH-Hhcc---------CCCceEEEEcCc
Q psy15878 77 LNEPQR-GPILECVVSK-VLYL---------KKSIQIFAMSAT 108 (693)
Q Consensus 77 l~d~~r-g~~le~il~~-l~~~---------~~~~qii~lSAT 108 (693)
+.+... ...+..++.. +... .+.+++|+||||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 174 TNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred hccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 975433 2222222222 1111 157899999998
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.68 E-value=1.5e-08 Score=100.89 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=53.6
Q ss_pred CCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHHHHHH
Q psy15878 38 NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALST 117 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~~la~ 117 (693)
.+++|+||||+++..++.. .++++++||+||+|.++- ..+ .+...+..+....++.|+++||||+++.. +++
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~~~-~~~-~~~~~l~~i~~~~~~~~~il~SAT~~~~~-~~~ 225 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHERDI-NTD-FLLVVLRDVVQAYPEVRIVLMSATIDTSM-FCE 225 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSCCH-HHH-HHHHHHHHHHHHCTTSEEEEEECSSCCHH-HHH
T ss_pred CCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccCCc-chH-HHHHHHHHHHhhCCCCeEEEEecCCCHHH-HHH
Confidence 5689999999997655443 489999999999996420 111 12123344433456789999999998744 999
Q ss_pred hhcCC
Q psy15878 118 FIEGI 122 (693)
Q Consensus 118 ~l~~~ 122 (693)
|++..
T Consensus 226 ~~~~~ 230 (235)
T 3llm_A 226 YFFNC 230 (235)
T ss_dssp HTTSC
T ss_pred HcCCC
Confidence 98653
No 92
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.58 E-value=5.4e-08 Score=99.67 Aligned_cols=96 Identities=10% Similarity=0.218 Sum_probs=68.5
Q ss_pred ChhhHHHHHHHHhhhhCcEEEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCC
Q psy15878 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80 (693)
Q Consensus 1 L~~e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~ 80 (693)
|+.|.++++++++...+..+..+.|+..... .....++|+|+||+.+ .+. ....+.++++||+||||++.+
T Consensus 169 L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l---~~~--~~~~~~~~~~vIiDEaH~~~~- 239 (282)
T 1rif_A 169 LTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTV---VKQ--PKEWFSQFGMMMNDECHLATG- 239 (282)
T ss_dssp HHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHH---TTS--CGGGGGGEEEEEEETGGGCCH-
T ss_pred HHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHH---Hhh--HHHHHhhCCEEEEECCccCCc-
Confidence 5678888888887655667777777654322 2236789999999874 332 223568899999999999863
Q ss_pred CChHHHHHHHHHHhccCCCceEEEEcCcCCC
Q psy15878 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGN 111 (693)
Q Consensus 81 ~rg~~le~il~~l~~~~~~~qii~lSATl~n 111 (693)
..++.++.++ ....++++||||+++
T Consensus 240 ---~~~~~il~~~---~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 240 ---KSISSIISGL---NNCMFKFGLSGSLRD 264 (282)
T ss_dssp ---HHHHHHTTTC---TTCCEEEEECSSCCT
T ss_pred ---ccHHHHHHHh---hcCCeEEEEeCCCCC
Confidence 3555555443 357899999999986
No 93
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=98.57 E-value=9.6e-08 Score=74.64 Aligned_cols=55 Identities=31% Similarity=0.352 Sum_probs=52.4
Q ss_pred hhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15878 607 ALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKL 662 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~ 662 (693)
+|.++|||++..+.+|.++||.|+++|+.+++++|.. ++|+++..|++|+..|+.
T Consensus 8 ~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~-i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLAD-IEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHT-SSSCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHH-ccCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999 559999999999999987
No 94
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=98.56 E-value=1e-08 Score=88.21 Aligned_cols=74 Identities=18% Similarity=0.292 Sum_probs=55.5
Q ss_pred chhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q psy15878 604 NLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQ 679 (693)
Q Consensus 604 el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~ 679 (693)
.+..|-++ |||+..+.+|.++||.|+++|+.+++++|.. ++|+|+..|++|++.|+++...+|.+|.++.++=.
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~-i~GIse~ka~kIi~aA~kl~~~gF~ta~e~~~~r~ 97 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEEAGFHTVEAVAYAPKKELIN-IKGISEAKADKILAEAAKLVPMGFTTATEFHQRRS 97 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHT-TTTCSTTHHHHHHHHHHHHSCCC------------
T ss_pred cHHHHHhc-CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHH-ccCCCHHHHHHHHHHHHHHcccCCCcHHHHHHHhc
Confidence 33444444 9999999999999999999999999999999 67999999999999999998878999888776543
No 95
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=98.52 E-value=7.1e-09 Score=101.76 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=7.9
Q ss_pred ccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH-------h---hh-hhhhhh
Q psy15878 602 APNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK-------L---HF-ITKMDK 670 (693)
Q Consensus 602 ~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~-------~---~~-~~~~~~ 670 (693)
.++..+|.+|||||+++|++|+++||.|+++|+.|++++|.. ++|+|+++|++|+..+. + ++ . .+
T Consensus 11 ~a~~~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~-v~GIG~ktAe~I~~~l~~~~~~~~r~~~~~~~---~~ 86 (241)
T 1vq8_Y 11 EEEYTELTDISGVGPSKAESLREAGFESVEDVRGADQSALAD-VSGIGNALAARIKADVGGLEVESETEAEVEEE---GG 86 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHh-ccCCCHHHHHHHHHHHHHHHhhcccccccccH---HH
Confidence 456678999999999999999999999999999999999988 78999999999988883 3 43 4 78
Q ss_pred HHHHHHHHHHHHhcCcc-cc
Q psy15878 671 VEAMKNLIQNLQKNYDN-IV 689 (693)
Q Consensus 671 ~~~~~~~~~~~~~~~~~-~~ 689 (693)
|+++++++++.|+.+++ +.
T Consensus 87 a~~~a~~i~~~l~~~~~~~~ 106 (241)
T 1vq8_Y 87 EEAPDEDVETELQARGLTEK 106 (241)
T ss_dssp ---------CCEEECSCTTC
T ss_pred HHHHHHHHHHHHHhCCCCcC
Confidence 88899999999998887 54
No 96
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=98.33 E-value=4.2e-07 Score=70.72 Aligned_cols=59 Identities=24% Similarity=0.269 Sum_probs=54.9
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFI 665 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~ 665 (693)
..+++.+||+...|..|.++||.|+++|+.+++++|.. ++||++.++++|++.|+.++.
T Consensus 6 ~~f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~-I~G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 6 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLE-IEGLDEPTVEALRERAKNALA 64 (70)
T ss_dssp HHHHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTT-STTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhh-ccCCCHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999 789999999999999998876
No 97
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=98.21 E-value=1.5e-06 Score=97.71 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=75.7
Q ss_pred CccchhhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH-------hhhhhhhhhHH
Q psy15878 601 RAPNLRALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK-------LHFITKMDKVE 672 (693)
Q Consensus 601 ~~~el~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~-------~~~~~~~~~~~ 672 (693)
.++.+..|+++|||||++|+++|+. |+.|+++|..|-..+-...++|+|+|+|++|+.+.+ ++.. ++|+
T Consensus 88 ~~~~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l~~~~~~~~r~~~---~e~~ 164 (575)
T 3b0x_A 88 VPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPL---GAVL 164 (575)
T ss_dssp SCHHHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHHHHHHHHTCCEEH---HHHH
T ss_pred hHHHHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHHHHHHHhccceeH---HHHH
Confidence 4666788999999999999999998 999999999987554455689999999999988884 4555 9999
Q ss_pred HHHHHHHHHHhcCccccc
Q psy15878 673 AMKNLIQNLQKNYDNIVH 690 (693)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~ 690 (693)
++++.+.+.+++++++.+
T Consensus 165 ~~~~~i~~~l~~~~~~~~ 182 (575)
T 3b0x_A 165 SLARSLLEAIRALPGVER 182 (575)
T ss_dssp HHHHHHHHHHHTSTTCCE
T ss_pred HHHHHHHHHHHhCCCCcE
Confidence 999999999999998754
No 98
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=98.09 E-value=3.4e-06 Score=85.63 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=45.5
Q ss_pred hhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHH
Q psy15878 605 LRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLI 657 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~ 657 (693)
..-|..||||||.+|++|.+. |-|++.+++|++++|.. .|+|.++|+.|.
T Consensus 467 eamLtAIaGIGp~tAeRLLEk-FGSVe~Vm~AteDELRe--dGIGekqarrI~ 516 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKK-YGGYSKVREAGVEELRE--DGLTDAQIRELK 516 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH-HTSHHHHHHSCHHHHHH--TTCCHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHH-hcCHHHHHhCCHHHHHH--ccccHHHHHHHh
Confidence 456779999999999999999 88999999999999955 799999999885
No 99
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.05 E-value=3.5e-06 Score=83.76 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=51.3
Q ss_pred hCcE-EEEeeccCCCCCccccccCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHh
Q psy15878 16 FKFY-LEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVL 94 (693)
Q Consensus 16 ~~~~-v~~~~G~~~~~~~~~~~~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~ 94 (693)
++++ +..+.|+.. ...+|+|+||+.+...... ...++++|||||+|++.+.. +..++..
T Consensus 156 ~~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~-----~~~~~~llIiDEaH~l~~~~----~~~i~~~-- 215 (237)
T 2fz4_A 156 FGEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAES----YVQIAQM-- 215 (237)
T ss_dssp GCGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTTT----HHHHHHT--
T ss_pred CCCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH-----hcccCCEEEEECCccCCChH----HHHHHHh--
Confidence 5777 888887642 3579999999986433222 12568999999999998643 3333332
Q ss_pred ccCCCceEEEEcCcCCCHH
Q psy15878 95 YLKKSIQIFAMSATIGNIN 113 (693)
Q Consensus 95 ~~~~~~qii~lSATl~n~~ 113 (693)
.+..++++||||+.+.+
T Consensus 216 --~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 216 --SIAPFRLGLTATFERED 232 (237)
T ss_dssp --CCCSEEEEEEESCC---
T ss_pred --ccCCEEEEEecCCCCCC
Confidence 24678999999997543
No 100
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=98.04 E-value=6.4e-06 Score=63.01 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=46.5
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHH-HHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRS-ARNLISAAK 661 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~-a~~i~~~a~ 661 (693)
..|.+|||||++++++|.+. |.|+++|.+|+.++|.++ +|.+. |++|.+...
T Consensus 4 s~L~~IpGIG~kr~~~LL~~-Fgs~~~i~~As~eeL~~v---ig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHH-VKNIAELAALSQDELTSI---LGNAANAKQLYDFIH 56 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHH-CSSHHHHHTCCHHHHHHH---HSCHHHHHHHHHHHH
T ss_pred hHHHcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHH---cCchHHHHHHHHHHh
Confidence 35679999999999999999 999999999999999996 67888 999987664
No 101
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=97.95 E-value=4.3e-06 Score=67.34 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=48.2
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
..|..|||||+++|++|++. |.|+++|..+++++|.+ ++|+|+++|++|....
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~-fgsl~~l~~a~~eeL~~-i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAK-VPGISQGLAEKIFWSL 76 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTT-SSSTTSHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHH-CCCCCHHHHHHHHHHH
Confidence 45779999999999999999 78999999999999988 7899999999998764
No 102
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=97.88 E-value=2e-05 Score=65.18 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=49.9
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKL 662 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~ 662 (693)
..|..|||||+++|++|.+. |.|++++..+++++|.. ++|+|+++|++|......
T Consensus 19 ~~L~~IpgIG~~~A~~Ll~~-fgsl~~l~~a~~~eL~~-i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 19 ECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLAL-CPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHHTTSSSCCHHHHHHHHHH-TCBHHHHHHCCHHHHHT-STTCCHHHHHHHHHHHHS
T ss_pred HHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHh-CCCCCHHHHHHHHHHHHH
Confidence 45679999999999999998 88999999999999988 789999999999988754
No 103
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=97.84 E-value=1.9e-05 Score=63.00 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=49.8
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKL 662 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~ 662 (693)
..|..+||||+++|+.|.+. |.|+++|..+++++|.. ++|+|++.|.+|......
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~-fgs~~~l~~a~~~~L~~-i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKH-FGSVERVFTASVAELMK-VEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTT-STTCCHHHHHHHHHHHHS
T ss_pred HHHcCCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 45789999999999999997 88999999999999988 789999999999887754
No 104
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=97.83 E-value=9.1e-06 Score=85.77 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=64.4
Q ss_pred cCccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH-------HhhhhhhhhhHH
Q psy15878 600 CRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA-------KLHFITKMDKVE 672 (693)
Q Consensus 600 g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a-------~~~~~~~~~~~~ 672 (693)
-+++.+.+|++|||||+++|++||+.||+|++||.+ +-|.|+.++|..+. +++.. ++|+
T Consensus 115 ~~~~~l~~l~~I~GvGpk~a~~ly~~Gi~tledL~~-----------~~g~kl~~~q~~Gl~~~~d~~~ripr---~ea~ 180 (381)
T 1jms_A 115 ERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQS-----------DKSLRFTQMQKAGFLYYEDLVSCVNR---PEAE 180 (381)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHH-----------CSSCCCCHHHHHHHHTHHHHHSCBCH---HHHH
T ss_pred cchhHHHHHHccCCCCHHHHHHHHHcCCCcHHHHHh-----------CcccchHHHHHHHHHHHHHhcCCEEH---HHHH
Confidence 567788999999999999999999999999999986 22556666776666 45666 9999
Q ss_pred HHHHHHHHHHhcCccccc
Q psy15878 673 AMKNLIQNLQKNYDNIVH 690 (693)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~ 690 (693)
++++.+.+.+++++++.+
T Consensus 181 ~ia~~i~~~l~~~~~~~~ 198 (381)
T 1jms_A 181 AVSMLVKEAVVTFLPDAL 198 (381)
T ss_dssp HHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHHhcCCCcE
Confidence 999999999999887654
No 105
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.83 E-value=4.9e-05 Score=85.00 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=63.2
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.++.+|||++|.+..+.++..+.. ..+ +.++.. .+|..+
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--------------------------------------~~~-~~q~~~--~~~~~~ 421 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--------------------------------------IPV-IEENKK--TRHEEV 421 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--------------------------------------SCE-EESTTT--CCHHHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--------------------------------------Cce-EecCCC--CcHHHH
Confidence 677899999999999999876654 113 344443 468889
Q ss_pred HHHHhCCCCeEEE--ecchhhcccCCCC----cEEEEecCcCCCccC--------------------------CHHHHHH
Q psy15878 258 EEAYLAGTLQIIC--CTSTLAAGVNLPA----QRVIIRDSYVGRDFI--------------------------SLNMYKQ 305 (693)
Q Consensus 258 e~~f~~g~i~VLv--aT~~l~~Gvnlp~----~~vVI~~~~~g~~~~--------------------------s~~~~~Q 305 (693)
++.|++|. .|++ ||..+.+|||+|+ .++||..+.+-..|. ....+.|
T Consensus 422 l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q 500 (540)
T 2vl7_A 422 LELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQ 500 (540)
T ss_dssp HHHHHTSC-CEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHH
Confidence 99999865 5666 8999999999997 676766532211110 1245689
Q ss_pred HhhccCCCCCCCCCcEEEEeccc
Q psy15878 306 MVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 306 r~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
.+||+-|...| .|.++ ++++.
T Consensus 501 ~~GR~iR~~~D-~g~v~-llD~R 521 (540)
T 2vl7_A 501 TIGRAFRDPND-YVKIY-LCDSR 521 (540)
T ss_dssp HHHHHCCSTTC-CCEEE-EESGG
T ss_pred HhCCcccCCCc-cEEEE-EEccc
Confidence 99999998754 77554 44443
No 106
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=97.83 E-value=1.8e-05 Score=65.65 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=48.9
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
..|..|||||+++|+.|.+. |.|+++|..+++++|.+ ++|+|++.|++|.+...
T Consensus 32 ~~L~~IpgIG~~~A~~Ll~~-fgs~~~l~~as~~eL~~-i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 32 ECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLAL-CPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHT-SSSCCSHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHh-CCCCCHHHHHHHHHHHh
Confidence 45679999999999999998 77999999999999988 78999999999988764
No 107
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=97.82 E-value=2.2e-05 Score=63.49 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=45.8
Q ss_pred hhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHH-HHHHHHHHH
Q psy15878 607 ALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRS-ARNLISAAK 661 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~-a~~i~~~a~ 661 (693)
.|..|||||++++++|.+. |.|+++|.+|+.++|.++ +|.+. |++|.+...
T Consensus 19 ~L~~IpGIG~kr~~~LL~~-FgSl~~i~~AS~eEL~~v---ig~~~~A~~I~~~l~ 70 (84)
T 1z00_B 19 FLLKMPGVNAKNCRSLMHH-VKNIAELAALSQDELTSI---LGNAANAKQLYDFIH 70 (84)
T ss_dssp HHHTCSSCCHHHHHHHHHH-SSCHHHHHHSCHHHHHHH---HSCHHHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHH---hCchHHHHHHHHHHH
Confidence 4669999999999999999 999999999999999996 67788 999987664
No 108
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=97.78 E-value=1.7e-05 Score=82.49 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=62.4
Q ss_pred hccC-ccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH-------Hhhhhhhhh
Q psy15878 598 MYCR-APNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA-------KLHFITKMD 669 (693)
Q Consensus 598 ~~g~-~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a-------~~~~~~~~~ 669 (693)
+... ++.+.+|++|||||+++|++||+.||+|++||.+| ...|.. +|..+. +++.. .
T Consensus 89 ~~~~~~~~l~~l~~V~GiGpk~a~~l~~~Gi~tledL~~a-~~~l~~-----------~~~~gl~~~~~~~~ripr---~ 153 (335)
T 2fmp_A 89 RQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKN-EDKLNH-----------HQRIGLKYFGDFEKRIPR---E 153 (335)
T ss_dssp HHCHHHHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHTC-GGGSCH-----------HHHHHHHTHHHHTSCEEH---H
T ss_pred HcccchhHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHHh-hhhhHH-----------HHHHHHHHHHHhcCcEEH---H
Confidence 3444 67889999999999999999999999999999998 332222 444444 45666 9
Q ss_pred hHHHHHHHHHHHHhcCccccc
Q psy15878 670 KVEAMKNLIQNLQKNYDNIVH 690 (693)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~ 690 (693)
+|+++++.+.+.+++++++.+
T Consensus 154 ea~~ia~~i~~~l~~~~~~~~ 174 (335)
T 2fmp_A 154 EMLQMQDIVLNEVKKVDSEYI 174 (335)
T ss_dssp HHHHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHHHHHhcCCCcE
Confidence 999999999999999887654
No 109
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=97.71 E-value=5.6e-05 Score=78.43 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=58.6
Q ss_pred hhhhh-cCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH-------HhhhhhhhhhHHHHHH
Q psy15878 605 LRALM-DLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA-------KLHFITKMDKVEAMKN 676 (693)
Q Consensus 605 l~~l~-~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a-------~~~~~~~~~~~~~~~~ 676 (693)
+++|+ +|||||+++|++||+.||+|++||..+... +++++| +. +++.. .+|+++++
T Consensus 94 ~l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a~~~-----------k~~q~I--gl~~~~~~~~ripr---~ea~~ia~ 157 (335)
T 2bcq_A 94 VLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASL-----------TTQQAI--GLKHYSDFLERMPR---EEATEIEQ 157 (335)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHHCCC-----------CHHHHH--HHHTTTGGGCCEEH---HHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHHhcc-----------cHHHHH--HHHHHHHhcCCEEH---HHHHHHHH
Confidence 56666 999999999999999999999999987532 567777 55 45556 99999999
Q ss_pred HHHHHHhcCccccc
Q psy15878 677 LIQNLQKNYDNIVH 690 (693)
Q Consensus 677 ~~~~~~~~~~~~~~ 690 (693)
.+.+.+++++++.+
T Consensus 158 ~i~~~l~~~~~~~~ 171 (335)
T 2bcq_A 158 TVQKAAQAFNSGLL 171 (335)
T ss_dssp HHHHHHHTTCTTCE
T ss_pred HHHHHHHhcCCCcE
Confidence 99999999887654
No 110
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.62 E-value=0.00038 Score=78.89 Aligned_cols=115 Identities=15% Similarity=0.248 Sum_probs=69.7
Q ss_pred HHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCC
Q psy15878 172 VLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLT 250 (693)
Q Consensus 172 l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~ 250 (693)
+.+++. .++.++||++|.+..+.++..+.. .. .. ..-|++
T Consensus 440 i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~--~~------------------------------------~~-~~q~~~ 480 (620)
T 4a15_A 440 IEDIILKVKKNTIVYFPSYSLMDRVENRVSF--EH------------------------------------MK-EYRGID 480 (620)
T ss_dssp HHHHHHHHCSCEEEEESCHHHHHHHTSSCCS--CC------------------------------------EE-CCTTCC
T ss_pred HHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh--cc------------------------------------hh-ccCCCC
Confidence 344444 677899999999999888776642 11 11 334566
Q ss_pred HHHHHHHHHHHhCCCCeEEEecc--hhhcccCCCC---cEEEEec-CcCCCcc--------------------C---CHH
Q psy15878 251 AGERRLIEEAYLAGTLQIICCTS--TLAAGVNLPA---QRVIIRD-SYVGRDF--------------------I---SLN 301 (693)
Q Consensus 251 ~~eR~~ve~~f~~g~i~VLvaT~--~l~~Gvnlp~---~~vVI~~-~~~g~~~--------------------~---s~~ 301 (693)
..+|..+.+.|+ +.-.||++|. .+.+|||+|+ ..|||.. |++...| + -..
T Consensus 481 ~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~ 559 (620)
T 4a15_A 481 QKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAI 559 (620)
T ss_dssp SHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHH
T ss_pred hhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHH
Confidence 678999999999 8889999985 8999999997 3455542 2221111 0 123
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEeccc
Q psy15878 302 MYKQMVGRAGRTGLQESGESIMLCKTM 328 (693)
Q Consensus 302 ~~~Qr~GRaGR~g~d~~G~~i~l~~~~ 328 (693)
...|-+||+=|...| .|.++ ++++.
T Consensus 560 ~l~Qa~GRlIR~~~D-~G~v~-llD~R 584 (620)
T 4a15_A 560 KIRQEIGRLIRSAED-TGACV-ILDKR 584 (620)
T ss_dssp HHHHHHHTTCCSTTC-CEEEE-EECGG
T ss_pred HHHHHhCccccCCCc-eEEEE-EEccc
Confidence 458999999998754 67444 45544
No 111
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=97.62 E-value=4e-05 Score=80.39 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=61.2
Q ss_pred cCccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH-------HhhhhhhhhhHH
Q psy15878 600 CRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA-------KLHFITKMDKVE 672 (693)
Q Consensus 600 g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a-------~~~~~~~~~~~~ 672 (693)
-+++.+.+|++|||||+++|++||+.||+|++||. +....| .++|..+. +++.. ++|+
T Consensus 96 ~~~~~l~~l~~I~GvG~kta~~l~~~Gi~tledL~-~~~~~L-----------~~~~~~Gl~~~~d~~~ripr---~ea~ 160 (360)
T 2ihm_A 96 ERYQTMKLFTQVFGVGVKTANRWYQEGLRTLDELR-EQPQRL-----------TQQQKAGLQYYQDLSTPVRR---ADAE 160 (360)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-TCCTTC-----------CHHHHHHHHTHHHHHSCEEH---HHHH
T ss_pred cchHHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHH-hcccch-----------HHHHHHHHHHHHHhcCCEEH---HHHH
Confidence 56788899999999999999999999999999999 333222 33444444 45666 9999
Q ss_pred HHHHHHHHHHhcCccccc
Q psy15878 673 AMKNLIQNLQKNYDNIVH 690 (693)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~ 690 (693)
++++.+.+.+++++++.+
T Consensus 161 ~i~~~i~~~l~~~~~~~~ 178 (360)
T 2ihm_A 161 ALQQLIEAAVRQTLPGAT 178 (360)
T ss_dssp HHHHHHHHHHHTTCTTCE
T ss_pred HHHHHHHHHHHhcCCCcE
Confidence 999999999999887654
No 112
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=97.53 E-value=8.5e-05 Score=71.02 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=50.6
Q ss_pred hhhcCCCCCHHHHHHHHHcCCCC---HHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 607 ALMDLPGVKIGRARQLLNAGYSS---LELIARADAKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~g~~s---~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
.|..+|||||++|++|.+. |.+ .+.|..+++++|.+ ++|+|+|+|++|+...+..+
T Consensus 74 ~L~~V~GIGpk~A~~iL~~-f~~~~l~~aI~~~d~~~L~~-vpGIG~K~A~rI~~elk~kl 132 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSG-MSAQQFVNAVEREEVGALVK-LPGIGKKTAERLIVEMKDRF 132 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHH-SCHHHHHHHHHTTCHHHHHT-STTCCHHHHHHHHHHHHHHG
T ss_pred HHhcCCCcCHHHHHHHHhh-CChHHHHHHHHhCCHHHHhh-CCCCCHHHHHHHHHHHHHhh
Confidence 4668999999999999998 888 88999999999999 88999999999999886554
No 113
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=97.50 E-value=7.4e-05 Score=70.65 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=50.4
Q ss_pred hhhcCCCCCHHHHHHHHHcCCCC---HHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 607 ALMDLPGVKIGRARQLLNAGYSS---LELIARADAKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~g~~s---~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
.|..+|||||++|++|.+. |.+ .+.|..+++++|.+ ++|+|+|+|++|+...+..+
T Consensus 73 ~L~~v~GIGpk~A~~iL~~-f~~~~l~~aI~~~d~~~L~~-vpGIG~K~A~rI~~~lk~k~ 131 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSA-LPPRLLARALLEGDARLLTS-ASGVGRRLAERIALELKGKV 131 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHH-SCHHHHHHHHHTTCHHHHTT-STTCCHHHHHHHHHHHTTTS
T ss_pred HHhcCCCcCHHHHHHHHHh-CChHHHHHHHHhCCHHHHHh-CCCCCHHHHHHHHHHHHHhh
Confidence 4678999999999999999 778 88899999999988 88999999999999986554
No 114
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=97.39 E-value=0.00014 Score=81.59 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=55.9
Q ss_pred hhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcC-CCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 591 TDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAG-YSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 591 ~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g-~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
.++..||.|-+.. +.|+|+|+|++++.+||++| ++++.||..+..++|.. ++|||+|++++|++++
T Consensus 434 aq~~~~l~hf~sr---~aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~-l~gfG~Ksa~nLl~aI 500 (671)
T 2owo_A 434 AQRKESLKHFVSR---RAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTG-LERMGPKSAQNVVNAL 500 (671)
T ss_dssp HHHHHHHHHHHST---TTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHT-STTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh---hhcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhc-ccccchhHHHHHHHHH
Confidence 3456666666553 46899999999999999995 69999999998788776 8999999999999986
No 115
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.33 E-value=0.00025 Score=73.65 Aligned_cols=69 Identities=28% Similarity=0.336 Sum_probs=62.4
Q ss_pred hhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy15878 607 ALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKN 676 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~ 676 (693)
+|.++|||++..+.+|.++||.|+++++.+++.+|.+ +.|++.+.|.++++.|++.....|.+|..+.+
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~-~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~~ 72 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTD-IEGISEKAAAKMIMGARDLCDLGFKSGIDLLK 72 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHT-STTCCHHHHHHHHHHHHHHTTCSCCCTHHHHH
T ss_pred cHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHH-hhCcCHHHHHHHHHHHHHhhhhcCCcHHHHHH
Confidence 5778999999999999999999999999999999999 45999999999999999887767899888864
No 116
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.29 E-value=0.00036 Score=73.26 Aligned_cols=71 Identities=30% Similarity=0.358 Sum_probs=64.5
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhh-hhhhHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFIT-KMDKVEAMKNL 677 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~-~~~~~~~~~~~ 677 (693)
.+|.+||||++..+.+|.++||.|+++++.+++.+|.++ .|++...+++|++.|.+.+.. .|.+|.++.++
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~-~~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEV-AGISEGTALKIIQAARKAANLGTFMRADEYLKK 106 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHH-HCCCHHHHHHHHHHHHHHCSTTSCEEHHHHHHH
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhh-cCCCHHHHHHHHHHHhhhccccCCccHHHHHhh
Confidence 467889999999999999999999999999999999995 499999999999999888776 78899988765
No 117
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=97.14 E-value=0.00021 Score=80.06 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=56.7
Q ss_pred hhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 590 LTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 590 l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
...+..||.|-+.. ..|.|+|+|++++.+|+++ +++|+.||..+.+++|.. ++|||+|++++|++++
T Consensus 428 paq~~~~l~hf~sr---~aldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~-l~g~G~Ksa~nLl~aI 495 (667)
T 1dgs_A 428 PAKRFEAIRHYASR---KAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLG-LERMGEKSAQNLLRQI 495 (667)
T ss_dssp GGGHHHHHHHHHST---TSSCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHT-TSSCCSTTHHHHHHHH
T ss_pred hhHHHHHHHHHhcc---cccCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhc-ccccchhhHHHHHHHH
Confidence 34566667665543 4589999999999999999 579999999999888876 7999999999999997
No 118
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.14 E-value=0.0098 Score=66.42 Aligned_cols=124 Identities=20% Similarity=0.202 Sum_probs=74.6
Q ss_pred HHHHHh-cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCC
Q psy15878 172 VLHLVQ-GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLT 250 (693)
Q Consensus 172 l~~l~~-~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~ 250 (693)
+.+++. .++.+|||++|.+..+.+++.+. ..+..-..+++
T Consensus 385 i~~l~~~~~g~~lvlF~Sy~~l~~v~~~~~---------------------------------------~~v~~q~~~~~ 425 (551)
T 3crv_A 385 LLKIYFQAKANVLVVFPSYEIMDRVMSRIS---------------------------------------LPKYVESEDSS 425 (551)
T ss_dssp HHHHHHHCSSEEEEEESCHHHHHHHHTTCC---------------------------------------SSEEECCSSCC
T ss_pred HHHHHHhCCCCEEEEecCHHHHHHHHHhcC---------------------------------------CcEEEcCCCCC
Confidence 333344 67799999999999888876211 11333333555
Q ss_pred HHHHHHHHHHHhCCCCeEEEec--chhhcccCCC---C---cEEEEec-CcC-----------------CC-cc---C--
Q psy15878 251 AGERRLIEEAYLAGTLQIICCT--STLAAGVNLP---A---QRVIIRD-SYV-----------------GR-DF---I-- 298 (693)
Q Consensus 251 ~~eR~~ve~~f~~g~i~VLvaT--~~l~~Gvnlp---~---~~vVI~~-~~~-----------------g~-~~---~-- 298 (693)
. ..+.+.|+...--|++|| ..+.+|||+| + ..|||.. |++ |. .+ +
T Consensus 426 ~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~ 502 (551)
T 3crv_A 426 V---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKI 502 (551)
T ss_dssp H---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHH
T ss_pred H---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 3 456777754334899998 6999999999 3 3344442 221 22 11 1
Q ss_pred -CHHHHHHHhhccCCCCCCCCCcEEEEecccccHHHHHHHHh
Q psy15878 299 -SLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMN 339 (693)
Q Consensus 299 -s~~~~~Qr~GRaGR~g~d~~G~~i~l~~~~~~~~~~~~~l~ 339 (693)
-.....|-+||+=|...| .|.+++ +++......|.+.+.
T Consensus 503 pa~~~l~Qa~GRlIR~~~D-~G~v~l-lD~R~~~~~~~~~~~ 542 (551)
T 3crv_A 503 PALVTIKQAIGRAIRDVND-KCNVWL-LDKRFESLYWKKNLK 542 (551)
T ss_dssp HHHHHHHHHHHTTCCSTTC-EEEEEE-ESGGGGSHHHHHHTT
T ss_pred HHHHHHHHHhccCccCCCc-cEEEEE-eehhcccchhhhhce
Confidence 133568999999998754 675554 444323445555443
No 119
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=97.05 E-value=0.00058 Score=66.61 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=48.3
Q ss_pred hhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 607 ALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
.|..|||||+++|+.|.+. |.|+++|..|++++|.. ++|+|++.|++|.+..+
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~-fgs~~~l~~a~~e~L~~-v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILER-FGSLERFFTASKAEISK-VEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHH-STTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhh-CCCCCHHHHHHHHHHHh
Confidence 3669999999999999999 88999999999999988 78999999999987654
No 120
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=97.02 E-value=0.00071 Score=74.84 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=54.3
Q ss_pred hHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcCC-CCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 592 DLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGY-SSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 592 ~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~-~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
++..||.|-+.. .-|.|.|+|+++..+|+++|+ +++.||-..+.++|.. ++|||+|.|+++++++
T Consensus 435 q~~~~l~hf~sr---~amdI~GlG~~~i~~L~~~g~i~~~~Dly~L~~~~L~~-l~g~geKsa~nL~~aI 500 (586)
T 4glx_A 435 QRKESLKHFVSR---RAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTG-LERMGPKSAQNVVNAL 500 (586)
T ss_dssp HHHHHHHHHHST---TTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHT-STTCCHHHHHHHHHHH
T ss_pred HHHhHHHhhhcc---ccccCCCcCHHHHHHHHhcCCCCCHHHHhCCCHHHHhc-ccCccHHHHHHHHHHH
Confidence 345555554432 236899999999999999985 9999999999999888 8999999999999888
No 121
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=96.99 E-value=0.00056 Score=65.56 Aligned_cols=50 Identities=26% Similarity=0.408 Sum_probs=45.7
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISA 659 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~ 659 (693)
..|..|||||+++|++|.++ |.|++.|.+|+.++|.++ +|+ ++|++|.+.
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~-FgSl~~i~~As~EeL~~V---IG~~~~A~~I~~~ 218 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEH-FGSLENIRSASLEEIARV---IGSTEIARRVLDI 218 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHH-HCSHHHHHTSCHHHHHHH---HTCHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHH-cCCHHHHHhCCHHHHHHH---hChHHHHHHHHHH
Confidence 56789999999999999999 889999999999999996 899 999999763
No 122
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=96.97 E-value=0.00074 Score=55.55 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=43.8
Q ss_pred hhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHH
Q psy15878 605 LRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNL 656 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i 656 (693)
+-+|.+||+||++.++.|.+.||.|+++|....+.+.-..++..|....-++
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~~~~~c~~~ 54 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCMSE 54 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTTCCHHH
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHHCCCCCHHH
Confidence 3468899999999999999999999999999999999988876654444333
No 123
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=96.92 E-value=0.00064 Score=70.24 Aligned_cols=60 Identities=12% Similarity=0.238 Sum_probs=53.7
Q ss_pred chhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhh
Q psy15878 604 NLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFI 665 (693)
Q Consensus 604 el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~ 665 (693)
..--|..||+||++.|+.|.+. |.|++.|.+|+.++|.+ ++|+|++.|++|.++.+++--
T Consensus 313 GyRiLs~IPrl~~~iae~Lv~~-FGsLq~Il~AS~eEL~~-VeGIGe~rAr~IregL~r~~~ 372 (377)
T 3c1y_A 313 GYRLLKTVARIPLSIGYNVVRM-FKTLDQISKASVEDLKK-VEGIGEKRARAISESISSLKH 372 (377)
T ss_dssp SHHHHHHTSCCCHHHHHHHHHH-HCSHHHHTTCCHHHHTT-STTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHh-ccCccHHHHHHHHHHHHHHhc
Confidence 3335668999999999999999 99999999999999988 899999999999999987643
No 124
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=96.90 E-value=0.00014 Score=70.07 Aligned_cols=52 Identities=27% Similarity=0.436 Sum_probs=0.0
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
..|..|||||+++|++|.++ |.|++.|..|+.++|.+ + |+|+++|++|.+..
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~-FGSl~~i~~As~eeL~~-V-GIG~~~A~~I~~~f 224 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNY-FGSVKKMKEATVEELQR-A-NIPRAVAEKIYEKL 224 (226)
T ss_dssp -------------------------------------------------------
T ss_pred ccccccCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHH-c-CCCHHHHHHHHHHh
Confidence 56789999999999999999 99999999999999999 5 99999999997643
No 125
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.84 E-value=0.00023 Score=74.06 Aligned_cols=77 Identities=27% Similarity=0.465 Sum_probs=8.0
Q ss_pred ccCccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy15878 599 YCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKN 676 (693)
Q Consensus 599 ~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~ 676 (693)
+|.+++..++.++|||++..+.+|.++||.|+++++.+++.+|..+ .|++...++++++.|.+.....|.+|..+.+
T Consensus 5 ~~~~~~~~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (324)
T 2z43_A 5 VEQKKNIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVA-AGIPLSTAQKIIKEARDALDIRFKTALEVKK 81 (324)
T ss_dssp --------------------------------------------------------------------CCCCHHHHHH
T ss_pred hcCCCCCccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHh-hCCCHHHHHHHHHHHHhhcccCccchhhhhh
Confidence 4555666789999999999999999999999999999999999995 5999999999999998877667899988864
No 126
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=96.74 E-value=0.00092 Score=64.00 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=48.2
Q ss_pred hhcCCCCCHHHHHHHHHc-CCCCHH-HHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 608 LMDLPGVKIGRARQLLNA-GYSSLE-LIARADAKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 608 l~~i~gi~~~~a~~L~~~-g~~s~~-~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
|..++||||+.|.++.+. |-.++. .|...+++.|.+ ++|+|+|+|++|+.+.+..+
T Consensus 90 L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~-vpGIG~KtA~rIi~elk~kl 147 (212)
T 2ztd_A 90 LLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTR-VPGIGKRGAERMVLELRDKV 147 (212)
T ss_dssp HHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHT-STTCCHHHHHHHHHHHTTTC
T ss_pred hcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhh-CCCCCHHHHHHHHHHHHHhh
Confidence 667999999999999998 666654 688889999988 88999999999999996554
No 127
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.67 E-value=0.0023 Score=68.18 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=61.7
Q ss_pred hhhhcCC--CCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q psy15878 606 RALMDLP--GVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNL 677 (693)
Q Consensus 606 ~~l~~i~--gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~ 677 (693)
.++-+++ ||++..+++|.++||.|+++|+.+++.+|.+ +.|++...+.+|++.|++.+...|.+|.++.+.
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~-~~gis~~~~~~i~~~a~~~~~~~~~ta~~l~~~ 153 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLE-IKGISEAKADKLLNEAARLVPMGFVTAADFHMR 153 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHT-STTCCHHHHHHHHHHHHHHSCCSCCCHHHHHHH
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHH-HhCCCHHHHHHHHHHHHHhccccCCCHHHHHhh
Confidence 3444455 5889999999999999999999999999999 559999999999999998887779999888754
No 128
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=96.66 E-value=0.0014 Score=51.96 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=36.5
Q ss_pred chhhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHH
Q psy15878 604 NLRALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLIS 658 (693)
Q Consensus 604 el~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~ 658 (693)
...+|.++||||+++|+++.+. +|.|+++| .+ ++|+|++++++|..
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL--------~~-v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGRPYARVEDL--------LK-VKGIGPATLERLRP 71 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTCCCSSGGGG--------GG-STTCCHHHHHHHGG
T ss_pred CHHHHHhCCCCCHHHHHHHHHHcccCCHHHH--------Hh-CCCCCHHHHHHHHH
Confidence 4456889999999999999998 55555554 44 78999999998853
No 129
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=96.58 E-value=0.0018 Score=56.14 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=44.6
Q ss_pred ccchhhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15878 602 APNLRALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHF 664 (693)
Q Consensus 602 ~~el~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~ 664 (693)
.+...+|.++|||||+.|.+..++ .|+|++||.+ ++|+|+++-+.+.+.-.++.
T Consensus 59 tA~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~---------V~GIg~k~~e~l~~~~~~~t 113 (134)
T 1s5l_U 59 NTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN---------IPGLTERQKQILRENLEHFT 113 (134)
T ss_dssp TSCGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGG---------CTTCCHHHHHHHHHHHTTEE
T ss_pred ccCHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHh---------CCCCCHHHHHHHHHhhccee
Confidence 345677889999999999999988 8999999865 78999998888877665443
No 130
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=96.56 E-value=0.0021 Score=52.76 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=42.2
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARN 655 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~ 655 (693)
.+|.++|+||++.++.|.+.||.|+++|....+.+.-..++..|....-+
T Consensus 4 ~~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rLk~~~~~~~~~ 53 (93)
T 3mab_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCMS 53 (93)
T ss_dssp CCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHCTTCCHH
T ss_pred HHHhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHhCCCCCHH
Confidence 46889999999999999999999999999999999888876555443333
No 131
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=96.41 E-value=0.006 Score=47.59 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 613 GVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 613 gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
++.+.....|.++||.|+.||...+++++.+ ++|||+|..++|.+..+.+
T Consensus 15 ~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlk-i~n~G~kSl~EI~~~L~~~ 64 (73)
T 1z3e_B 15 DLSVRSYNCLKRAGINTVQELANKTEEDMMK-VRNLGRKSLEEVKAKLEEL 64 (73)
T ss_dssp CCBHHHHHHHHHTTCCBHHHHHTSCHHHHHT-STTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHH-cCCCCHHHHHHHHHHHHHh
Confidence 5677778888889999999999999999999 8899999999999888754
No 132
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=96.40 E-value=0.0025 Score=52.75 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=44.2
Q ss_pred ccchhhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 602 APNLRALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 602 ~~el~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
.+...+|..|||||+++|+++.+. +|+|+++|.+ ++|+|+++.++|......+
T Consensus 22 tAs~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~---------V~Gig~~~~e~l~~~l~~f 75 (97)
T 3arc_U 22 NTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN---------IPGLTERQKQILRENLEHF 75 (97)
T ss_dssp TSCGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGG---------CTTCCHHHHHHHHHTGGGE
T ss_pred cCCHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHh---------ccCCCHHHHHHHHHHhcee
Confidence 345677889999999999999988 8999999863 7899999998887766543
No 133
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=96.32 E-value=0.0074 Score=48.46 Aligned_cols=50 Identities=10% Similarity=0.097 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 613 GVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 613 gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
++.......|.++||.|+.||...+.++|.+ ++|||+|+.++|.+..+.+
T Consensus 18 ~LSvRa~NcLkragI~Tv~dL~~~se~dLlk-i~n~G~KSl~EI~~~L~~~ 67 (86)
T 3k4g_A 18 ELTVRSANCLXAEAIHYIGDLVQRTEVELLX-TPNLGXXSLTEIXDVLASR 67 (86)
T ss_dssp CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHT-STTCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhh-ccccCcccHHHHHHHHHHc
Confidence 5678888888899999999999999999999 7899999999999988655
No 134
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=96.10 E-value=0.0058 Score=48.27 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=45.6
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
++ ++.......|.++||.|+.||...+.++|.+ ++|||+|+.++|.+..+.+
T Consensus 20 ~L-~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlk-i~n~G~kSl~EI~~~L~e~ 71 (79)
T 3gfk_B 20 EL-DLSVRSYNCLKRAGINTVQELANKTEEDMMK-VRNLGRKSLEEVKAKLEEL 71 (79)
T ss_dssp GS-CCBHHHHHHHHHTTCCBHHHHTTCCHHHHTT-STTCHHHHHHHHHHHHHHT
T ss_pred Hh-CCCHHHHHHHHHhCCCCHHHHHhCCHHHHHH-cCCCCHhHHHHHHHHHHHc
Confidence 44 6677788888888999999999999999999 7899999999999887654
No 135
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=95.93 E-value=0.0055 Score=68.77 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=47.0
Q ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 609 MDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 609 ~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+.|||||+++|+.|.++ |.|++.|..|+.++|.. ++|+|+++|++|.+..
T Consensus 515 lgi~~VG~~~Ak~La~~-Fgsl~~l~~As~eeL~~-i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 515 LGIREVGEATAAGLAAY-FGTLEALEAASIEELQK-VPDVGIVVASHVHNFF 564 (671)
T ss_dssp TTCTTCCHHHHHHHHHH-HCSHHHHHTCCHHHHTT-STTCCHHHHHHHHHHH
T ss_pred hcccCccHHHHHHHHHH-cCCHHHHHhCCHHHHhh-cCCCCHHHHHHHHHHH
Confidence 38999999999999999 99999999999999998 7899999999998876
No 136
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.47 E-value=0.003 Score=66.10 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=9.3
Q ss_pred hhhhcCC--CCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q psy15878 606 RALMDLP--GVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNL 677 (693)
Q Consensus 606 ~~l~~i~--gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~ 677 (693)
.++.++| |+++..+.+|.++||.|+++++.+++.+|.. +.|++...++++++.|.+.....|.+|..+.+.
T Consensus 25 ~~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~-~~~is~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 97 (343)
T 1v5w_A 25 QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCN-VKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEK 97 (343)
T ss_dssp --------------------------------------------------------------CCSEEHHHHHHH
T ss_pred CcHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHH-hhCCCHHHHHHHHHHHHhhcccCCCcHHHHHhh
Confidence 3667777 9999999999999999999999999999998 459999999999999988876678999888754
No 137
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=95.31 E-value=0.014 Score=65.41 Aligned_cols=50 Identities=24% Similarity=0.422 Sum_probs=46.9
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
.|||||+++|+.|.++ |.|++.|..|++++|.. ++|+|+++|++|.+..+
T Consensus 511 GI~~VG~~~Ak~La~~-Fgsl~~l~~As~eeL~~-I~GIG~~~A~sI~~ff~ 560 (667)
T 1dgs_A 511 GLPGVGEVLARNLARR-FGTMDRLLEASLEELIE-VEEVGELTARAILETLK 560 (667)
T ss_dssp TCSSCCHHHHHHHHHT-TSBHHHHTTCCHHHHHT-STTCCHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHH-cCCHHHHHhCCHHHHHh-ccCcCHHHHHHHHHHHh
Confidence 8999999999999999 99999999999999996 88999999999988763
No 138
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=94.97 E-value=0.0043 Score=68.69 Aligned_cols=65 Identities=9% Similarity=0.107 Sum_probs=0.0
Q ss_pred hHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcC-CCCHHHHHhcChHHHHHHhcCC------CHHHHHHHHHHH
Q psy15878 592 DLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAG-YSSLELIARADAKEMVAKIRHL------PLRSARNLISAA 660 (693)
Q Consensus 592 ~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g-~~s~~~l~~a~~~~l~~~~~~~------~~~~a~~i~~~a 660 (693)
++..||.|-+.. .-|.|.|+|.+++.+|+++| ++++.||-....++|.. ++|| |+|.|+++++++
T Consensus 446 Q~~~~l~hf~Sr---~amdI~GlG~~~i~~L~~~g~i~~~aDly~L~~~~L~~-l~~~~~~~g~g~ksa~nLl~aI 517 (615)
T 3sgi_A 446 QLRERVFHVASR---NGLDIEVLGYEAGVALLQAKVIADEGELFALTERDLLR-TDLFRTKAGELSANGKRLLVNL 517 (615)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcc---CccCccccCHHHHHHHHHCCCcCCHHHHhhCCHHHHhh-ccccccccCccchHHHHHHHHH
Confidence 345566665543 34789999999999999998 79999999999888887 6755 689999998887
No 139
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=94.95 E-value=0.02 Score=47.22 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 613 GVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 613 gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
++.......|.++||.|+.+|...+.++|.+ ++|||+|..+.|.+..+.+
T Consensus 30 ~LSvRs~NcLkragI~Tv~dL~~~se~dLlk-i~n~G~KSl~EI~~~L~~~ 79 (98)
T 1coo_A 30 ELTVRSANCLKAEAIHYIGDLVQRTEVELLK-TPNLGKKSLTEIKDVLASR 79 (98)
T ss_dssp TCCTTTHHHHHTTTCCBHHHHHTSCHHHHTT-STTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHh-cCCCCHHHHHHHHHHHHHc
Confidence 4566667778888999999999999999999 8899999999999988655
No 140
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=94.91 E-value=0.071 Score=42.62 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=46.5
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
..||+....+..|.++||+|++|+..+++.+|.++. |++.+.+.+|++..-
T Consensus 8 ~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~-~ls~~~v~~l~r~l~ 58 (83)
T 2kz3_A 8 LCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKC-GLSYKALVALRRVLL 58 (83)
T ss_dssp SSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 459999999999999999999999999999999977 999998888877663
No 141
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=94.67 E-value=0.025 Score=47.17 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=34.8
Q ss_pred hhhhcCCCCCHHHHHHHHHc-----CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNA-----GYSSLELIARADAKEMVAKIRHLPLRSARNLISA 659 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~-----g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~ 659 (693)
.+|..|||||+++|+++.+. .|.++++ |.+ ++|+|++++++|++.
T Consensus 40 ~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~ed--------L~~-v~Gig~k~~~~l~~~ 89 (98)
T 2edu_A 40 RDLRSLQRIGPKKAQLIVGWRELHGPFSQVED--------LER-VEGITGKQMESFLKA 89 (98)
T ss_dssp HHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGG--------GGG-STTCCHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHH--------HHh-CCCCCHHHHHHHHHC
Confidence 46788999999999999875 3544444 433 779999999999774
No 142
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=94.64 E-value=0.0058 Score=67.64 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=0.0
Q ss_pred hhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 608 LMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 608 l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
=+.|||||+++|+.|.++ |.|++.|..|+.++|.+ ++|+|+++|++|.+-.+
T Consensus 531 aLGIp~VG~~~ak~La~~-Fgsle~L~~As~eeL~~-I~GIG~~~A~sI~~ff~ 582 (615)
T 3sgi_A 531 ALSIRHVGPTAARALATE-FGSLDAIAAASTDQLAA-VEGVGPTIAAAVTEWFA 582 (615)
T ss_dssp ------------------------------------------------------
T ss_pred HcCCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhh-CCCCCHHHHHHHHHHHc
Confidence 358999999999999888 99999999999999998 78999999999988764
No 143
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=94.61 E-value=0.043 Score=60.65 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=47.0
Q ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 609 MDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 609 ~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
+.||+||.+.|+.|.++ |.|++.|..|+.+++.. ++|+|+++|++|.+-.+
T Consensus 515 LGI~~vG~~~a~~La~~-f~sl~~l~~a~~e~l~~-i~giG~~~A~si~~ff~ 565 (586)
T 4glx_A 515 LGIREVGEATAAGLAAY-FGTLEALEAASIEELQK-VPDVGIVVASHVHNFFA 565 (586)
T ss_dssp TTCTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTT-STTCCHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHH-cCCHHHHHccCHHHHhc-CCCccHHHHHHHHHHHc
Confidence 48999999999999988 88999999999999988 78999999999988764
No 144
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=94.32 E-value=0.048 Score=57.10 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=45.4
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++++++|.+.||.|+.||+.+++..|.+. ||.+....+.+.|
T Consensus 178 lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~---fG~~~g~~l~~~a 229 (356)
T 4dez_A 178 RPPDALWGVGPKTTKKLAAMGITTVADLAVTDPSVLTTA---FGPSTGLWLLLLA 229 (356)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHH---HCHHHHHHHHHHH
T ss_pred CcHHHHcCCchhHHHHHHHcCCCeecccccCCHHHHHHH---hCChHHHHHHHHH
Confidence 567799999999999999999999999999999998884 7777777776665
No 145
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=92.80 E-value=0.85 Score=46.45 Aligned_cols=116 Identities=9% Similarity=-0.059 Sum_probs=64.8
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.+||||++..+.-.-+-..+...++ ...-+.|.....+++
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~~~~------------------------------------~y~RlDG~~~~~~~k-- 165 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLGNKV------------------------------------HIKRYDGHSIKSAAA-- 165 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTTSSC------------------------------------EEEESSSCCC-------
T ss_pred CCCEEEEEECChhHHHHHHHHHhcCCC------------------------------------ceEeCCCCchhhhhh--
Confidence 789999999999888877777665221 133334442222211
Q ss_pred HHHHhCCCCeEEEecchhhcccC-----CCCcEEEEecCcCCCccCCHHHHHHHhhccCCC--CCCCCCcEEEEeccccc
Q psy15878 258 EEAYLAGTLQIICCTSTLAAGVN-----LPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRT--GLQESGESIMLCKTMQD 330 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~Gvn-----lp~~~vVI~~~~~g~~~~s~~~~~Qr~GRaGR~--g~d~~G~~i~l~~~~~~ 330 (693)
-+++...+-+.|+...-|+| +-+.++||-++. .+-+..+.+|.+-|+-|. |+...-.+|.+++.. .
T Consensus 166 ---~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~Ds---dwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~-T 238 (328)
T 3hgt_A 166 ---ANDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDT---TVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN-S 238 (328)
T ss_dssp -----CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECST---TCCTTSHHHHHHHCCC---------CCEEEEEETT-S
T ss_pred ---cccCCceEEEEECCCCCCcCcccccCCCCCEEEEECC---CCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC-C
Confidence 12455666666776666786 445556666553 133344567767677776 334567888888877 5
Q ss_pred HHHHHHHH
Q psy15878 331 FLRFSSMM 338 (693)
Q Consensus 331 ~~~~~~~l 338 (693)
.+...-.+
T Consensus 239 iEh~~l~~ 246 (328)
T 3hgt_A 239 IDHCRLFF 246 (328)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 55554444
No 146
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=92.67 E-value=0.12 Score=55.29 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=45.1
Q ss_pred hhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 607 ALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
++.++||||++++++|.+.||.|+.||+.++++.|.+. ||.+.+..+.+-|
T Consensus 235 pv~~l~GIG~~t~~~L~~lGI~TigdLa~~~~~~L~~~---fG~~~g~~L~~~a 285 (420)
T 3osn_A 235 HIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKE---LGISVAQRIQKLS 285 (420)
T ss_dssp SGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHccCCCHHHHHHHHHhCCCcHHHHhhCCHHHHHHH---hCchHHHHHHHHh
Confidence 37789999999999999999999999999999988874 6777788887776
No 147
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=92.46 E-value=0.11 Score=56.80 Aligned_cols=52 Identities=13% Similarity=0.203 Sum_probs=46.3
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..|||||++++++|.+.||.|+.||+.+++..|.+. ||.+....+.+.|
T Consensus 315 LPV~~l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~---fG~~~g~~L~~~a 366 (504)
T 3gqc_A 315 QLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKE---FGPKTGQMLYRFC 366 (504)
T ss_dssp SBGGGSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHH---HCHHHHHHHHHHT
T ss_pred CChhHhhCcCHHHHHHHHHcCCCcHHHHHhccHHHHHHh---hChhHHHHHHHHh
Confidence 578899999999999999999999999999999988884 7877788887666
No 148
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=92.37 E-value=0.075 Score=53.11 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCCChhHHHHHHHhhhh
Q psy15878 396 ETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLH 450 (693)
Q Consensus 396 ~~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l~~~~~~~~~~~l~~ 450 (693)
....+..+++.|...|+++.+ ..+|++|+.++++|++|..+++++.+...
T Consensus 16 ~~~~l~~A~~~L~~LgAld~~-----g~lT~lG~~ma~lPl~P~lakmLl~a~~~ 65 (270)
T 3i4u_A 16 PMETLITAMEQLYTLGALDDE-----GLLTRLGRRMAEFPLEPMLCKMLIMSVHL 65 (270)
T ss_dssp HHHHHHHHHHHHHHHTSBCTT-----SCBCHHHHHHTTSCSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCcCCC-----CCccHHHHHHHhCCCCHHHHHHHHHhhhc
Confidence 345678899999999999743 36999999999999999999999987543
No 149
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=92.22 E-value=0.22 Score=46.34 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=29.3
Q ss_pred CccchhhhhcCCCCCHHHHHHHHHc----CCCCHHHHHh
Q psy15878 601 RAPNLRALMDLPGVKIGRARQLLNA----GYSSLELIAR 635 (693)
Q Consensus 601 ~~~el~~l~~i~gi~~~~a~~L~~~----g~~s~~~l~~ 635 (693)
+.+.+-+|..|||||++.|++..+. .|+|++||.+
T Consensus 127 ITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~ 165 (205)
T 2i5h_A 127 ITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQ 165 (205)
T ss_dssp BCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHH
T ss_pred ccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 3667778899999999999988765 6999999854
No 150
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=92.21 E-value=0.076 Score=55.46 Aligned_cols=52 Identities=23% Similarity=0.246 Sum_probs=46.2
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++++++|.+.||.|+.||+.+++..|.+. ||......+...|
T Consensus 178 lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~---fG~~~g~~l~~~a 229 (352)
T 1jx4_A 178 LDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGM---IGEAKAKYLISLA 229 (352)
T ss_dssp SBGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHHHHHH---HCHHHHHHHHHHH
T ss_pred CCCCcccccCHHHHHHHHHcCCchHHHHHCCCHHHHHHh---cChhHHHHHHHHh
Confidence 578899999999999999999999999999999988884 7776688888877
No 151
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=91.75 E-value=0.076 Score=55.54 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=46.2
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++++++|.+.||.|+.||+.+++..|.+. ||..+...+...|
T Consensus 179 lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~---fG~~~g~~l~~~a 230 (354)
T 3bq0_A 179 LDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKI---TGKAKALYLLKLA 230 (354)
T ss_dssp CBSTTSTTCCHHHHHHHTTTTCCBGGGGGGSCHHHHHHH---HCHHHHHHHHHHH
T ss_pred CCcccccCcCHHHHHHHHHcCCccHHHHhcCCHHHHHHH---HCHHHHHHHHHHh
Confidence 467899999999999999999999999999999988884 7777688888887
No 152
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=91.22 E-value=0.075 Score=55.71 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=46.4
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++++++|.+.||.|+.||+.+++..|.+. ||.+....+.+.|
T Consensus 179 lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~---fG~~~g~~l~~~a 230 (362)
T 4f4y_A 179 LDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKI---TGKAKALYLLKLA 230 (362)
T ss_dssp CBSTTSTTCCSTTHHHHHHTTCCBGGGGTTSCHHHHHHH---HCHHHHHHHHHHH
T ss_pred CChhhccCCCHHHHHHHHHcCCChHHHHhcCCHHHHHHH---hChHHHHHHHHHh
Confidence 477799999999999999999999999999999988874 7877888888776
No 153
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=90.89 E-value=0.15 Score=54.75 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=42.2
Q ss_pred hhhhcCCCCCHHHHHHHHH--cCCCCHHHHHhc-ChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLN--AGYSSLELIARA-DAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~--~g~~s~~~l~~a-~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..+||||++++++|.+ .||.|+.||+.+ ++..|.+. ||.+....+...|
T Consensus 241 lpv~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~~~~~~L~~~---fG~~~g~~l~~~a 295 (434)
T 2aq4_A 241 FKLDDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKAS---VGSKLGMKIHLAL 295 (434)
T ss_dssp CCGGGSTTCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHHHH---HCSSHHHHHHHHT
T ss_pred CCcccccCcCHHHHHHHHHhcCCceEHHHHHhcCCHHHHHHH---hCHHHHHHHHHHh
Confidence 5678999999999999999 899999999999 88888885 4544454444444
No 154
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=90.74 E-value=0.052 Score=60.52 Aligned_cols=41 Identities=24% Similarity=0.062 Sum_probs=29.0
Q ss_pred CCCcEEEEcccchHHHHhchhcc--CCCCcccEEEEecccccCCCCC
Q psy15878 38 NKKSIYICTIEKGSKLIGSLIQE--NRIDEIGLIVIDEFHMLNEPQR 82 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~~~--~~l~~i~lvVvDE~H~l~d~~r 82 (693)
..++|||+|+..+. +..... ....+..+|||||||.+.+ .+
T Consensus 147 ~~adIVV~~~~~l~---~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~ 189 (551)
T 3crv_A 147 YKADVIALTYPYFF---IDRYREFIDIDLREYMIVIDEAHNLDK-VN 189 (551)
T ss_dssp GGCSEEEEETHHHH---CHHHHTTSCCCSTTEEEEETTGGGGGG-GG
T ss_pred hcCCEEEeCchHhc---CHHHHHhcCCCcCCeEEEEecccchHH-HH
Confidence 46899999999853 332211 2235778999999999987 53
No 155
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=89.48 E-value=1.1 Score=51.85 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=63.7
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.+++|.+||+.-+...++.+.+.... ....++.+||+++..+|..+
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~--------------------------------~gi~v~~l~G~~~~~~r~~~ 463 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSK--------------------------------FNIHVALLIGATTPSEKEKI 463 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTC--------------------------------SSCCEEECCSSSCHHHHHHH
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhh--------------------------------cCceEEEEeCCCCHHHHHHH
Confidence 6789999999999888888777651100 01348999999999999999
Q ss_pred HHHHhCCCCeEEEecch-hhcccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTST-LAAGVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~-l~~Gvnlp~~~vVI~~ 290 (693)
.+.+++|..+|+|+|.. +...+++....+||.+
T Consensus 464 ~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 464 KSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp HHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred HHHHhcCCCCEEEECHHHHhhhhhccCCceEEec
Confidence 99999999999999964 4455788887776654
No 156
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=88.27 E-value=0.14 Score=49.60 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=25.4
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMV 642 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~ 642 (693)
+++..+||||++++++|.+.||+|+.||+.+++..|.
T Consensus 184 lpv~~l~giG~~~~~~L~~~Gi~TigdL~~~~~~~L~ 220 (221)
T 1im4_A 184 LDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELE 220 (221)
T ss_dssp CBGGGSTTCCHHHHHHHHHTTCCBTTC----------
T ss_pred CCcccccCCCHHHHHHHHHcCCCcHHHHHCCCHHHhh
Confidence 4688999999999999999999999999999877664
No 157
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=87.15 E-value=0.29 Score=52.56 Aligned_cols=52 Identities=4% Similarity=0.031 Sum_probs=44.2
Q ss_pred hhhhcCCCCCHHHHHH-HHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQ-LLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~-L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..++|||++.+.+ |...||.|+.||+.+++..|.+. ||.+.+..+.+.|
T Consensus 253 lpv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~---fG~~~g~~L~~~a 305 (435)
T 4ecq_A 253 MPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSH---FGEKNGSWLYAMC 305 (435)
T ss_dssp CBGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHH---HCHHHHHHHHHHT
T ss_pred CCHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHH---hCccHHHHHHHHh
Confidence 5778999999998766 67779999999999999998884 7788888887766
No 158
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=87.02 E-value=0.79 Score=49.51 Aligned_cols=51 Identities=8% Similarity=0.049 Sum_probs=42.3
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..|||||++.+++|...||+|+.||+.. +..|.+ .||.+.+..+.+-|
T Consensus 282 lpv~~l~GiG~~~~~~L~~lGI~T~gdL~~~-~~~L~~---~fG~~~~~~l~~~a 332 (459)
T 1t94_A 282 LPIRKVSGIGKVTEKMLKALGIITCTELYQQ-RALLSL---LFSETSWHYFLHIS 332 (459)
T ss_dssp CBGGGCTTSCHHHHHHHHHTTCCBHHHHHHT-HHHHHH---HSCHHHHHHHHHHH
T ss_pred CCHHhcCCcCHHHHHHHHHcCCCcHHHHHhh-HHHHHH---HhChHhHHHHHHHH
Confidence 4677999999999999999999999999996 555554 38988787777766
No 159
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=86.39 E-value=0.88 Score=49.82 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=41.8
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+++..|||||+++++.|...||.|+.||+.. +..|.. . ||...+..+.+.|
T Consensus 338 LPV~kl~GIG~~t~~~L~~lGI~TigDL~~~-~~~L~~-~--fG~~~~~~l~~~a 388 (517)
T 3pzp_A 338 LPIRKVSGIGKVTEKMLKALGIITCTELYQQ-RALLSL-L--FSETSWHYFLHIS 388 (517)
T ss_dssp CBGGGSTTCCHHHHHHHHHTTCCBHHHHHHH-HHHHHH-H--SCHHHHHHHHHHH
T ss_pred CChhhhccccHHHHHHHHHhCCCcHHHHHhh-HHHHHH-H--hChHHHHHHHHHH
Confidence 4778999999999999999999999999987 443433 3 8888777777666
No 160
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=85.83 E-value=1.8 Score=41.90 Aligned_cols=64 Identities=6% Similarity=0.101 Sum_probs=48.4
Q ss_pred CCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHH----HHHHHHHHhcCccccccc
Q psy15878 627 YSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAM----KNLIQNLQKNYDNIVHNT 692 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 692 (693)
|-|+++|+.+++++|.. + |++.+.|+.|..-|+.+..-++...+.+ .+++.+.|.+++||=.-|
T Consensus 95 fPtpe~la~~~~e~Lr~-~-Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~T 162 (232)
T 4b21_A 95 FPTPKQIMETDVETLHE-C-GFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWT 162 (232)
T ss_dssp CCCHHHHHTSCHHHHHT-T-TCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHH
T ss_pred CCCHHHHHcCCHHHHHH-c-CCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHH
Confidence 89999999999999865 4 9999999999999987765112122333 346788888999986543
No 161
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=84.46 E-value=1.3 Score=40.22 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=32.6
Q ss_pred HHHHHHcCCCCHHHHHhcChHHHHHHhcCCC--HHHHHHHHHHHHhhh
Q psy15878 619 ARQLLNAGYSSLELIARADAKEMVAKIRHLP--LRSARNLISAAKLHF 664 (693)
Q Consensus 619 a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~--~~~a~~i~~~a~~~~ 664 (693)
..+|++. |-|+++|++|+++++.+.++++| ...|+.|++.++..+
T Consensus 53 ~~~l~~~-~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~v 99 (161)
T 4e9f_A 53 LWKFLEK-YPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYL 99 (161)
T ss_dssp HHHHHHH-SCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCcC
Confidence 3445555 67888888888888888888777 456888887776543
No 162
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=84.33 E-value=0.84 Score=36.40 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=26.8
Q ss_pred chhhhhcCCCCCHHHHHHHHHcCCCCHHHHH
Q psy15878 604 NLRALMDLPGVKIGRARQLLNAGYSSLELIA 634 (693)
Q Consensus 604 el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~ 634 (693)
+--++.++||||++.+++|-+.||..-..+.
T Consensus 16 geK~V~evpGIG~~~~~~L~~~Gf~kAy~lL 46 (89)
T 1ci4_A 16 GEKPVGSLAGIGEVLGKKLEERGFDKAYVVL 46 (89)
T ss_dssp TTCCGGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred CCCCcccCCCcCHHHHHHHHHcCccHHHHHH
Confidence 3356889999999999999999999977764
No 163
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=83.61 E-value=2.1 Score=45.16 Aligned_cols=80 Identities=9% Similarity=0.089 Sum_probs=61.2
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.+|++.-+...++.+.. +. + ....+..+||+.+..+|...
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~--~~-~------------------------------~~~~v~~~~g~~~~~~~~~~ 109 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQK--LA-D------------------------------EKVKIFGFYSSMKKEEKEKF 109 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHH--HC-C------------------------------SSCCEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHH--Hc-c------------------------------CCceEEEEECCCChhhHHHH
Confidence 788999999999999999888876 21 0 01348999999999999999
Q ss_pred HHHHhCCCCeEEEecchhhc----ccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTSTLAA----GVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l~~----Gvnlp~~~vVI~~ 290 (693)
.+.+..|..+|+|+|+---. -+++....+||.+
T Consensus 110 ~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViD 146 (414)
T 3oiy_A 110 EKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVD 146 (414)
T ss_dssp HHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEES
T ss_pred HHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEe
Confidence 99999999999999974321 2455566666554
No 164
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=83.13 E-value=1.9 Score=41.29 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=50.5
Q ss_pred HHHHHHcCCCC------HHHHHhcChHHHHHHhcC--CCHHHHHHHHHHHHhhhhhhhhhHHH-HHHHHHHHHhcCcccc
Q psy15878 619 ARQLLNAGYSS------LELIARADAKEMVAKIRH--LPLRSARNLISAAKLHFITKMDKVEA-MKNLIQNLQKNYDNIV 689 (693)
Q Consensus 619 a~~L~~~g~~s------~~~l~~a~~~~l~~~~~~--~~~~~a~~i~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 689 (693)
..+|.++||-| +++|+.++++++.+.+++ ++...|+.|.+.|+.+.. ++..... -..++.+.|.++|||=
T Consensus 52 ~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~i~~-~~~~l~~~~~~~~~~~L~~lpGIG 130 (218)
T 1pu6_A 52 LENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILK-DFQSFENFKQEVTREWLLDQKGIG 130 (218)
T ss_dssp HHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHH-HHSSHHHHHHHCCHHHHHTSTTCC
T ss_pred HHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-hcCChhhccchHHHHHHHcCCCcC
Confidence 34566668888 999999999999987765 556679999999987654 2222111 1234566677899985
Q ss_pred ccc
Q psy15878 690 HNT 692 (693)
Q Consensus 690 ~~~ 692 (693)
+-|
T Consensus 131 ~kT 133 (218)
T 1pu6_A 131 KES 133 (218)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 165
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=81.78 E-value=1.4 Score=45.81 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=37.7
Q ss_pred hhhhcCCCCCHHHHHHHHHc----CCCCHHHHHh-cChHHHHH--HhcCCCHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNA----GYSSLELIAR-ADAKEMVA--KIRHLPLRSARNLISA 659 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~----g~~s~~~l~~-a~~~~l~~--~~~~~~~~~a~~i~~~ 659 (693)
.+|.+|||||+++|.+..+. -+..+++|.. -.|..+.. .++|+|+|+|+++.+.
T Consensus 61 ~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 61 SQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp GGGTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred HHHhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 35889999999999987765 4555555544 23332222 2579999999999764
No 166
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=81.50 E-value=2.4 Score=43.50 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=37.7
Q ss_pred hhhhhcCCCCCHHHHHHHHHc----CCCCHHHHHhcCh-HHHHHHhcCCCHHHHHHHHHH
Q psy15878 605 LRALMDLPGVKIGRARQLLNA----GYSSLELIARADA-KEMVAKIRHLPLRSARNLISA 659 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~----g~~s~~~l~~a~~-~~l~~~~~~~~~~~a~~i~~~ 659 (693)
+.+|.+|||||+++|.+..+. -+..+++|...-| -++...++|+|+|+|+++.+.
T Consensus 56 ~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 56 YQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred HHHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHHHc
Confidence 346889999999999988765 3455555532222 123334789999999999764
No 167
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=80.86 E-value=5.8 Score=47.97 Aligned_cols=81 Identities=14% Similarity=0.084 Sum_probs=63.3
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.+++|.|||+.-+...++.+.+ ... .....+..+++..+..++..+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~--~~~------------------------------~~~i~v~~l~~~~~~~~~~~~ 698 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRD--RFA------------------------------NWPVRIEMISRFRSAKEQTQI 698 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH--HST------------------------------TTTCCEEEESTTSCHHHHHHH
T ss_pred hCCeEEEEechHHHHHHHHHHHHH--Hhh------------------------------cCCCeEEEEeCCCCHHHHHHH
Confidence 677889999998888887777765 110 011348899999999999999
Q ss_pred HHHHhCCCCeEEEecc-hhhcccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTS-TLAAGVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~-~l~~Gvnlp~~~vVI~~ 290 (693)
.+.+.+|..+|+|+|. .+...+++....+||-+
T Consensus 699 ~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 699 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 732 (1151)
T ss_dssp HHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEE
T ss_pred HHHHhcCCCCEEEECHHHHhCCccccccceEEEe
Confidence 9999999999999994 55556888888877664
No 168
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=80.61 E-value=0.42 Score=49.05 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=23.1
Q ss_pred CCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhh-hHHHhhhHHHHhhccC---------ccchhhhhcCC
Q psy15878 543 DNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWC-YKQLLTDLPQTLMYCR---------APNLRALMDLP 612 (693)
Q Consensus 543 ~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~-~~~~l~~~~~rl~~g~---------~~el~~l~~i~ 612 (693)
.+..+|++--|||.-..|.+- ...+.++.++.+. |. ....+ ....-++.|+ .++.--|+.+.
T Consensus 557 ~sd~~ia~ikgip~~~~~~~~------~e~a~~l~er~~~-~~~~~~~~-~~~~l~~~g~~~~~~~eik~p~~k~ll~~~ 628 (685)
T 4gfj_A 557 FSDDEIAEIKGIPKKLREAFD------LETAAELYERYGS-LKEIGRRL-SYDDLLELGATPKAAAEIKGPEFKFLLNIE 628 (685)
T ss_dssp CCHHHHHHHHTCCHHHHHHSC------HHHHHHHHHHHSS-STGGGGSC-GGGCCSSSCCGGGC----------------
T ss_pred CchhhHHHhcCCcHHHHhhcC------HHHHHHHHHHhcc-HHHHhhcC-CHHHHhccCCCHHHHHHhcChhHHHhhccc
Confidence 467889999999966555321 1123344455554 43 11110 0011122333 23445688999
Q ss_pred CCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhh
Q psy15878 613 GVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFI 665 (693)
Q Consensus 613 gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~ 665 (693)
|+||+.|.+|.++==...+-|+...+++|...++|+|++.|+.|..++++...
T Consensus 629 gv~p~la~r~~e~~~~~~~~l~~~~~~~l~~~ve~~g~~laer~~~a~~~~ve 681 (685)
T 4gfj_A 629 GVGPKLAERILEAVDYDLERLASLNPEELAEKVEGLGEELAERVVYAARERVE 681 (685)
T ss_dssp -----------------------------------------------------
T ss_pred CCCHHHHHHHHHHhCCcHHHHhhCCHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 99999999999992235667777799999999999999999999999876643
No 169
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=80.59 E-value=4.4 Score=39.24 Aligned_cols=63 Identities=8% Similarity=-0.023 Sum_probs=46.8
Q ss_pred CCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHH----HHHHHHHHhcCccccccc
Q psy15878 627 YSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAM----KNLIQNLQKNYDNIVHNT 692 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 692 (693)
|-|+++|+.+++++|.. + |++.+.|+.|++.|+.+.. ++...+.+ .+++.+.|.++|||=.-|
T Consensus 84 fPtp~~la~~~~e~Lr~-~-G~~~~KA~~I~~~A~~i~~-~~~~~~~l~~~p~~~~~~~L~~lpGIG~kT 150 (233)
T 2h56_A 84 LEKPEQLYRVSDEALRQ-A-GVSKRKIEYIRHVCEHVES-GRLDFTELEGAEATTVIEKLTAIKGIGQWT 150 (233)
T ss_dssp CCCTHHHHTSCHHHHHH-T-TCCHHHHHHHHHHHHHHHT-TSSCHHHHTTSCHHHHHHHHHTSTTCCHHH
T ss_pred CCCHHHHHcCCHHHHHH-c-CCCHHHHHHHHHHHHHHHh-CCCCHHHHhcCCHHHHHHHHHhCCCcCHHH
Confidence 56999999999999944 5 8999999999999987755 11133333 346777778999985533
No 170
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=80.44 E-value=0.9 Score=45.49 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=41.8
Q ss_pred HHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCcccccc
Q psy15878 622 LLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVHN 691 (693)
Q Consensus 622 L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (693)
|++. |-|+++|+.|+++++.+.++++|. +.|+.|.+.|+.+.. ++.. .+.+..+++++.++||=+-
T Consensus 74 L~~~-fptpe~La~a~~eel~~~ir~lG~~~KA~~L~~~A~~i~~-~~~g--~~p~~~~~Ll~~LpGIG~k 140 (287)
T 3n5n_X 74 WMQK-WPTLQDLASASLEEVNQLWAGLGYYSRGRRLQEGARKVVE-ELGG--HMPRTAETLQQLLPGVGRY 140 (287)
T ss_dssp HHHH-CCSHHHHHTSCHHHHHHHHTTSSCHHHHHHHHHHHHHHHH-HSTT--CCCSSHHHHHHHSTTCCHH
T ss_pred HHHH-CCCHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCC--CCcHHHHHHHHHcCCCCHH
Confidence 4444 779999999999999888876663 358888888876644 1110 1112344555557877543
No 171
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=80.15 E-value=1.7 Score=44.75 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=37.4
Q ss_pred hhhhcCCCCCHHHHHHHHHc----CCCCHHHHHhcC-hHHHHHH--hcCCCHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNA----GYSSLELIARAD-AKEMVAK--IRHLPLRSARNLISA 659 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~----g~~s~~~l~~a~-~~~l~~~--~~~~~~~~a~~i~~~ 659 (693)
.+|.+|||||+++|.+..+. -+..++++..-. +..+... ++|+|+|+|+++.+.
T Consensus 57 ~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 57 AEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHc
Confidence 35889999999999887765 344455554433 3333332 579999999999764
No 172
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=80.08 E-value=5.8 Score=38.18 Aligned_cols=65 Identities=17% Similarity=0.086 Sum_probs=48.1
Q ss_pred cCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHH----HHHHHHHHhcCcccccc
Q psy15878 625 AGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAM----KNLIQNLQKNYDNIVHN 691 (693)
Q Consensus 625 ~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 691 (693)
..|-|+++|+.+++++|.. + |++.+.|+.|..-|+.+..-.+...+.+ .+++.+.|.+++||=.-
T Consensus 82 ~~fPtp~~la~~~~e~Lr~-~-G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~ 150 (228)
T 3s6i_A 82 GQFPTPEEIRDMDFEIMRA-C-GFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRW 150 (228)
T ss_dssp GSCCCHHHHHHSCHHHHHH-H-TCCHHHHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHH
T ss_pred CCCCCHHHHHcCCHHHHHH-c-CCCHHHHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHH
Confidence 4689999999999999855 5 9999999999999987764111112222 35677778889998543
No 173
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=78.16 E-value=4.6 Score=48.54 Aligned_cols=81 Identities=9% Similarity=0.041 Sum_probs=61.8
Q ss_pred hcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHH
Q psy15878 177 QGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRL 256 (693)
Q Consensus 177 ~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ 256 (693)
..+.++||.+||+.-|..++..+.+.+. ....++.+||+.+..+|..
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~---------------------------------~~i~v~~l~Gg~~~~er~~ 165 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLAD---------------------------------EKVKIFGFYSSMKKEEKEK 165 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSC---------------------------------TTSCEEEECTTCCTTHHHH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhC---------------------------------CCCeEEEEeCCCCHHHHHH
Confidence 3788999999999999999998877210 0134899999999999999
Q ss_pred HHHHHhCCCCeEEEecchhh-c---ccCCCCcEEEEec
Q psy15878 257 IEEAYLAGTLQIICCTSTLA-A---GVNLPAQRVIIRD 290 (693)
Q Consensus 257 ve~~f~~g~i~VLvaT~~l~-~---Gvnlp~~~vVI~~ 290 (693)
..+.++.|..+|+|+|+--- . -+++..+.+||.+
T Consensus 166 ~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViD 203 (1104)
T 4ddu_A 166 FEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVD 203 (1104)
T ss_dssp HHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEES
T ss_pred HHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEe
Confidence 99999999999999996322 1 1445566665553
No 174
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=77.58 E-value=0.91 Score=50.17 Aligned_cols=41 Identities=29% Similarity=0.114 Sum_probs=28.0
Q ss_pred CCCcEEEEcccchHH-HHhchhc----cCCCCcccEEEEecccccC
Q psy15878 38 NKKSIYICTIEKGSK-LIGSLIQ----ENRIDEIGLIVIDEFHMLN 78 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~-Ll~~l~~----~~~l~~i~lvVvDE~H~l~ 78 (693)
..++|+|||+..+.. ..++... ...+.+.++|||||||.+.
T Consensus 143 ~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp GGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 568999999998542 1221111 1145788999999999983
No 175
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=75.48 E-value=6.4 Score=39.46 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=46.1
Q ss_pred CCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHH----HHHHHHHHhcCcccccc
Q psy15878 627 YSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAM----KNLIQNLQKNYDNIVHN 691 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 691 (693)
|-|+++|+.+++++|.. + |+|.| |+.|++.|+.+..- .-..+.+ .+++.+.|.++|||=.-
T Consensus 158 fPtpe~la~~~~e~L~~-~-g~g~R-a~~I~~~A~~i~~g-~~~l~~l~~~~~~~~~~~L~~lpGIG~~ 222 (290)
T 3i0w_A 158 FPTVDKLHEFTEKDFEE-C-TAGFR-AKYLKDTVDRIYNG-ELNLEYIKSLNDNECHEELKKFMGVGPQ 222 (290)
T ss_dssp CCCHHHHTTCCHHHHHH-T-TCGGG-HHHHHHHHHHHHTT-SSCHHHHHHSCHHHHHHHHTTSTTCCHH
T ss_pred CCcHHHHHCCCHHHHHH-c-CCchH-HHHHHHHHHHHHhC-CCCHHHHhcCCHHHHHHHHHhCCCcCHH
Confidence 88999999999999988 4 89985 99999999877651 1122222 35677888899998543
No 176
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=74.96 E-value=2 Score=42.98 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=31.2
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCC-CHHHHHHHHHHHH
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHL-PLRSARNLISAAK 661 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~-~~~~a~~i~~~a~ 661 (693)
.+||||+++|.+|.+. |.|++.|.+.-. .+ ..+..+++.++..
T Consensus 207 GVpGIG~KTA~kLL~~-~gsle~i~~~~~--------~~~~~~~~~~L~~~~~ 250 (290)
T 1exn_A 207 GVEGIGAKRGYNIIRE-FGNVLDIIDQLP--------LPGKQKYIQNLNASEE 250 (290)
T ss_dssp CCTTCCHHHHHHHHHH-HCSHHHHHHHCS--------CSCCCHHHHHHHTCHH
T ss_pred CCCcCCHhHHHHHHHH-cCCHHHHHHHHH--------HhccHHHHHHHHHhHH
Confidence 5999999999999998 779998865432 23 3366666665553
No 177
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=74.15 E-value=10 Score=39.48 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=37.2
Q ss_pred hhhhcCCCCCHHHHHHHHHc---C-CCCHHHHHh-cChHHHHH--HhcCCCHHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNA---G-YSSLELIAR-ADAKEMVA--KIRHLPLRSARNLISA 659 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~---g-~~s~~~l~~-a~~~~l~~--~~~~~~~~~a~~i~~~ 659 (693)
.+|.+|||||+++|.+..+. | +..+++|.. -.|..+.. .+.|+|+|+|+++.+.
T Consensus 80 ~~l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 80 KDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp GGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHHc
Confidence 35889999999999988765 3 344555543 23333332 2579999999999764
No 178
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=73.35 E-value=10 Score=35.87 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=46.6
Q ss_pred ccchhhhhcCCCCCHHHHHHHHHc--C-CCCH-HHHH----hc-ChHHHHHHhc--CCCHHHHHHHHHHH-Hhhhhhhhh
Q psy15878 602 APNLRALMDLPGVKIGRARQLLNA--G-YSSL-ELIA----RA-DAKEMVAKIR--HLPLRSARNLISAA-KLHFITKMD 669 (693)
Q Consensus 602 ~~el~~l~~i~gi~~~~a~~L~~~--g-~~s~-~~l~----~a-~~~~l~~~~~--~~~~~~a~~i~~~a-~~~~~~~~~ 669 (693)
..+.-.|.++||||+++|.++... + +... .... .. ..++...+|. |+.++.|++.++.+ ...-. .
T Consensus 119 ~~d~~~L~~vpGIG~KtA~rIi~elk~kl~~~~~~~~~~~~~~~~~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~---~ 195 (212)
T 2ztd_A 119 DGNVAALTRVPGIGKRGAERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHD---A 195 (212)
T ss_dssp TTCHHHHHTSTTCCHHHHHHHHHHHTTTCC-------------CCHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---C
T ss_pred hCCHHHHhhCCCCCHHHHHHHHHHHHHhhccccccccccccCcccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC---C
Confidence 345567889999999999998855 2 2110 0000 01 2245555544 57788888888877 32212 4
Q ss_pred hHHHHHHHHHHHHh
Q psy15878 670 KVEAMKNLIQNLQK 683 (693)
Q Consensus 670 ~~~~~~~~~~~~~~ 683 (693)
+++++-.++...|.
T Consensus 196 ~~e~lir~ALk~L~ 209 (212)
T 2ztd_A 196 TTSSALRSALSLLG 209 (212)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhh
Confidence 56677666666654
No 179
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=73.23 E-value=1.8 Score=41.69 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=42.4
Q ss_pred HHHHcCCCCHHHHHhcChHHHHHHhcCCC--HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCcccccc
Q psy15878 621 QLLNAGYSSLELIARADAKEMVAKIRHLP--LRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVHN 691 (693)
Q Consensus 621 ~L~~~g~~s~~~l~~a~~~~l~~~~~~~~--~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (693)
.|.+. |-|+++|+.++++++.+.+++.| ...|+.|.+.|+.+.. +++. .+ .++.+.|..+|||=.-
T Consensus 59 ~l~~~-fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~-~~~g--~~-p~~~~~L~~lpGIG~~ 126 (221)
T 1kea_A 59 KFFVK-YKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVIN-DYGG--RV-PRNRKAILDLPGVGKY 126 (221)
T ss_dssp HHHHH-CCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHH-HHTT--SC-CSCHHHHHTSTTCCHH
T ss_pred HHHHH-CCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HhCC--Cc-hHHHHHHHhCCCCcHH
Confidence 34444 78899999999999988776554 4678888888876644 1111 11 1234556677887543
No 180
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=71.55 E-value=6.7 Score=29.87 Aligned_cols=43 Identities=9% Similarity=0.199 Sum_probs=35.7
Q ss_pred HHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 619 ARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 619 a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
+....++||.|++.|+..+.++|.+ + |+.....++|..+++.+
T Consensus 20 ~d~F~~~g~~s~~~v~~lt~eDL~~-~-GIt~ghqkkIl~siq~l 62 (69)
T 2y9u_A 20 LDYFTTQGLTTIYQIEHYSMDDLAS-L-KIPEQFRHAIWKGILDH 62 (69)
T ss_dssp HHHHHTTTCCBHHHHTTCCHHHHHH-T-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHcCHHHHHh-c-CCChhhHHHHHHhHHHH
Confidence 3445566999999999999999999 4 89987778999888754
No 181
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=69.32 E-value=11 Score=41.93 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=51.1
Q ss_pred hcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHH
Q psy15878 177 QGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRL 256 (693)
Q Consensus 177 ~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ 256 (693)
...+.+||.+|++.-++.....|...+ ..+.++||+++..++..
T Consensus 82 ~~~g~~lVisP~~~L~~q~~~~l~~~g------------------------------------i~~~~l~~~~~~~~~~~ 125 (591)
T 2v1x_A 82 CSDGFTLVICPLISLMEDQLMVLKQLG------------------------------------ISATMLNASSSKEHVKW 125 (591)
T ss_dssp TSSSEEEEECSCHHHHHHHHHHHHHHT------------------------------------CCEEECCSSCCHHHHHH
T ss_pred HcCCcEEEEeCHHHHHHHHHHHHHhcC------------------------------------CcEEEEeCCCCHHHHHH
Confidence 356789999999998888887776622 23889999999999999
Q ss_pred HHHHH--hCCCCeEEEecc
Q psy15878 257 IEEAY--LAGTLQIICCTS 273 (693)
Q Consensus 257 ve~~f--~~g~i~VLvaT~ 273 (693)
+...+ ..+..+|+++|+
T Consensus 126 ~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 126 VHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp HHHHHHCTTCCCCEEEECH
T ss_pred HHHHhhcccCCCCEEEECh
Confidence 99888 578999999998
No 182
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=68.96 E-value=1 Score=45.90 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=0.0
Q ss_pred CHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 615 KIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 615 ~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
....+--|.++||.|+.||...+.++|.+ +++||+|..++|.+..+.+
T Consensus 263 svRs~NCLKra~I~tv~dL~~~se~dLlk-i~n~G~kSl~EI~~~L~~~ 310 (329)
T 3lu0_A 263 TVRSANCLKAEAIHYIGDLVQRTEVELLK-TPNLGKKSLTEIKDVLASR 310 (329)
T ss_dssp -------------------------------------------------
T ss_pred CHHHHHHHHHcCCcCHHHHhhCCHHHHhh-CcCCChhhHHHHHHHHHHc
Confidence 44445667777999999999999999999 7899999999998877544
No 183
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=68.86 E-value=12 Score=40.77 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=51.4
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
..+.+||.+|++.-+......+...+ ..+.++|++.+..++..+
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~g------------------------------------i~~~~l~~~~~~~~~~~~ 107 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANG------------------------------------VAAACLNSTQTREQQLEV 107 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTT------------------------------------CCEEEECTTSCHHHHHHH
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcC------------------------------------CcEEEEeCCCCHHHHHHH
Confidence 56789999999998888887776622 238889999999999999
Q ss_pred HHHHhCCCCeEEEecch
Q psy15878 258 EEAYLAGTLQIICCTST 274 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~ 274 (693)
...+..|..+++++|+-
T Consensus 108 ~~~~~~~~~~ilv~Tpe 124 (523)
T 1oyw_A 108 MTGCRTGQIRLLYIAPE 124 (523)
T ss_dssp HHHHHHTCCSEEEECHH
T ss_pred HHHHhcCCCCEEEECHH
Confidence 99999999999999974
No 184
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=68.67 E-value=5.5 Score=38.18 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=64.3
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcC
Q psy15878 547 KVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAG 626 (693)
Q Consensus 547 ~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g 626 (693)
...+.-|++|..-..+.+.-..+|+.+..=.+.+..++. ...++.=..| ..+.-.+.+|..-.|+|+++|..|..+
T Consensus 355 tlidehglspdaadeliehfesiagilatdleeiermye-egrlseeayr--aaveiqlaeltkkegvgrktaerllra- 430 (519)
T 2csb_A 355 TLIDEHGLSPDAADELIEHFESIAGILATDLEEIERMYE-EGRLSEEAYR--AAVEIQLAELTKKEGVGRKTAERLLRA- 430 (519)
T ss_dssp HHHHHHCCCHHHHHHHHHHHSSHHHHHTSCHHHHHHHHH-HTSSCHHHHH--HHHHHHHHHHHTSTTCCHHHHHHHHHH-
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHHhccHHHHHHHHH-cccccHHHHH--HHHHHHHHHHhhhcccchhHHHHHHHH-
Confidence 344556677766666666666666654321111111110 0011111111 123345678899999999999999999
Q ss_pred CCCHHHHHhcCh---HHHHHHhcCCCHHHHHHHHHHHHh
Q psy15878 627 YSSLELIARADA---KEMVAKIRHLPLRSARNLISAAKL 662 (693)
Q Consensus 627 ~~s~~~l~~a~~---~~l~~~~~~~~~~~a~~i~~~a~~ 662 (693)
|.+++.+..... -+-...++|.|++.-.+++-+-..
T Consensus 431 fgnpervkqlarefeieklasvegvgervlrslvpgyas 469 (519)
T 2csb_A 431 FGNPERVKQLAREFEIEKLASVEGVGERVLRSLVPGYAS 469 (519)
T ss_dssp HSSHHHHHHHHHTTCHHHHHTSTTCSHHHHHHHSTTHHH
T ss_pred hCCHHHHHHHHHHHhHHHHhhccchHHHHHHHhccchhh
Confidence 778877654332 233334789999988877655433
No 185
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=68.44 E-value=2.7 Score=40.46 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=40.0
Q ss_pred HHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCccccc
Q psy15878 622 LLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVH 690 (693)
Q Consensus 622 L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (693)
|+.. |-|+++|+.+++++|.+.+.+.|. +.|+.|.+.|+.+.. +++. .+ .++.+.|..+|||=+
T Consensus 55 l~~~-~pt~~~la~~~~~~l~~~i~~~G~~~kA~~l~~~a~~i~~-~~~g--~~-p~~~~~L~~lpGIG~ 119 (225)
T 1kg2_A 55 FMAR-FPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVAT-LHGG--KF-PETFEEVAALPGVGR 119 (225)
T ss_dssp HHHH-CSSHHHHHHSCHHHHHHHHTTSCCTHHHHHHHHHHHHHHH-HSTT--SC-CCSHHHHHTSTTCCH
T ss_pred HHHH-CCCHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHHH-HhCC--Cc-hHHHHHHhcCCCCcH
Confidence 4443 778999999999988887765552 358888888876643 1110 01 123455667788754
No 186
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=68.22 E-value=6.4 Score=39.84 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=28.5
Q ss_pred hhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChH
Q psy15878 607 ALMDLPGVKIGRARQLLNAGYSSLELIARADAK 639 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~ 639 (693)
-|++||||++..|..+.+. |.|+.+|..|-.+
T Consensus 238 mL~~IpGVs~~~A~~I~~~-ypTp~~L~~Ay~~ 269 (311)
T 2ziu_A 238 QLMQISGVSGDKAAAVLEH-YSTVSSLLQAYDK 269 (311)
T ss_dssp HHTTBTTCCHHHHHHHHHH-CSSHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHH-CCCHHHHHHHHHh
Confidence 4679999999999999999 9999999988633
No 187
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=67.92 E-value=2.4 Score=40.85 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=38.9
Q ss_pred CCCHHHHHhcChHHHHHHhcCCC--HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCccccc
Q psy15878 627 YSSLELIARADAKEMVAKIRHLP--LRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVH 690 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~~~~--~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (693)
|-|+++|+.++++++.+.+.+.| ...|+.|.+.|+.+.. ++.. .+ .++.+.|..+|||=+
T Consensus 62 fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~-~~~g--~~-p~~~~~L~~lpGIG~ 123 (226)
T 1orn_A 62 YRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLID-KYNG--EV-PRDRDELMKLPGVGR 123 (226)
T ss_dssp CCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHH-HSTT--SC-CSCHHHHTTSTTCCH
T ss_pred CCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-HhCC--Cc-HHHHHHHHHCCCccH
Confidence 67888888888888888775544 4678888888876643 1110 01 124455667777744
No 188
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=66.94 E-value=26 Score=33.49 Aligned_cols=77 Identities=12% Similarity=0.084 Sum_probs=50.3
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.+||+.-+..+++.+.. .. ......+...+||.+..++...
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~--~~------------------------------~~~~~~~~~~~g~~~~~~~~~~ 148 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAE--YC------------------------------RACRLKSTCIYGGAPKGPQIRD 148 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHH--HH------------------------------HHTTCCEEEECTTSCHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHH--HH------------------------------hhcCceEEEEECCCChHHHHHH
Confidence 356799999999999888777665 10 1112348889999987766544
Q ss_pred HHHHhCCCCeEEEecc-----hhhc-ccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTS-----TLAA-GVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~-----~l~~-Gvnlp~~~vVI~~ 290 (693)
.. . ..+|+|+|+ .+.. .+++....+||.+
T Consensus 149 ~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 183 (242)
T 3fe2_A 149 LE---R-GVEICIATPGRLIDFLECGKTNLRRTTYLVLD 183 (242)
T ss_dssp HH---H-CCSEEEECHHHHHHHHHHTSCCCTTCCEEEET
T ss_pred hc---C-CCCEEEECHHHHHHHHHcCCCCcccccEEEEe
Confidence 33 2 368999996 2222 3466666666553
No 189
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=66.05 E-value=2.1 Score=40.81 Aligned_cols=38 Identities=11% Similarity=0.185 Sum_probs=25.5
Q ss_pred CCCHHHHHhcChHHHHHHhcCCC--HHHHHHHHHHHHhhh
Q psy15878 627 YSSLELIARADAKEMVAKIRHLP--LRSARNLISAAKLHF 664 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~~~~--~~~a~~i~~~a~~~~ 664 (693)
|-|+++|++++++++.+.+++.| ...|+.|.+.|+.+.
T Consensus 58 fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~ 97 (211)
T 2abk_A 58 ANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILL 97 (211)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 66777777777777777665554 346777777776554
No 190
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=65.74 E-value=1.3 Score=44.98 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=0.0
Q ss_pred CHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15878 615 KIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKL 662 (693)
Q Consensus 615 ~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~ 662 (693)
....+--|.++||.|+.||..-+.++|.+ +++||+|..++|.+..+.
T Consensus 262 svRs~NcLk~a~I~ti~dL~~~se~~l~~-~~n~G~kSl~Ei~~~L~~ 308 (315)
T 2a6h_A 262 STRVLHSLKEEGIESVRALLALNLKDLKN-IPGIGERSLEEIKEALEK 308 (315)
T ss_dssp ------------------------------------------------
T ss_pred cHHHHHHHHHcCCcCHHHHhhCCHHHHhc-CCCCCcchHHHHHHHHHH
Confidence 34445557777999999999999999999 789999999999887754
No 191
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=65.57 E-value=2.9 Score=45.75 Aligned_cols=52 Identities=8% Similarity=-0.028 Sum_probs=38.8
Q ss_pred hhhhcCCCCCHHHHHHHHHc-CC---CCH-----------HHHHhcChHHHHHHhcCCCH------------HHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNA-GY---SSL-----------ELIARADAKEMVAKIRHLPL------------RSARNLIS 658 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~-g~---~s~-----------~~l~~a~~~~l~~~~~~~~~------------~~a~~i~~ 658 (693)
+++..++|||++++++|.+. |+ .|+ .+|+.+.+..|.+ .||. +.+..+.+
T Consensus 307 lPV~~l~GIG~~t~~~L~~llGI~~~~ti~~i~~l~~~t~~dL~~~~~~~L~~---~fG~~~~~~~d~~~~g~~g~~L~~ 383 (520)
T 3mfi_A 307 FEITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQ---SDYDRSTSNIDPLKTADLAEKLFK 383 (520)
T ss_dssp CCGGGSTTCSSHHHHHHHHHTTCCSSSHHHHHHHHSCSCHHHHHHHHHHHHHS---TTCC---CCCCTTCHHHHHHHHHH
T ss_pred CcHHHhcCCCHHHHHHHHHhcCCCcccchhhhhhccCCCHHHHHhcCHHHHHH---hcCccccccccchhhhHHHHHHHH
Confidence 46789999999999999999 99 676 5555554444443 4664 67888877
Q ss_pred HH
Q psy15878 659 AA 660 (693)
Q Consensus 659 ~a 660 (693)
.|
T Consensus 384 ~a 385 (520)
T 3mfi_A 384 LS 385 (520)
T ss_dssp HT
T ss_pred Hh
Confidence 77
No 192
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=64.65 E-value=8.8 Score=36.83 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=44.1
Q ss_pred CCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhh--hhhHHH-HHHHHHHHHhcCcccccc
Q psy15878 628 SSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITK--MDKVEA-MKNLIQNLQKNYDNIVHN 691 (693)
Q Consensus 628 ~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~ 691 (693)
-|+++|+.+++++|.. + |++...|+.|++-|+.+..-. ++.... =.+++.+.|..++||=.-
T Consensus 93 ptp~~la~~~~e~Lr~-~-G~~~~KA~~i~~lA~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~ 157 (225)
T 2yg9_A 93 VVPAALLKVSGDDLRG-V-GLSWAKVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRW 157 (225)
T ss_dssp SCHHHHTTSCHHHHHH-T-TCCHHHHHHHHHHHHHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHH
T ss_pred CCHHHHHcCCHHHHHH-C-CCcHHHHHHHHHHHHHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHH
Confidence 7999999999999854 5 899999999999998775411 111100 134566777789998543
No 193
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=64.56 E-value=24 Score=32.98 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=51.4
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
+.++||.+|++.-+..+++.+.+.... . -...+...+|+.+..++.
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~--------------------~-----------~~~~v~~~~g~~~~~~~~--- 127 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKY--------------------M-----------PNVKVAVFFGGLSIKKDE--- 127 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTT--------------------S-----------TTCCEEEESCCSCHHHHH---
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhh--------------------C-----------CCceEEEEeCCCChHHHH---
Confidence 348999999999999888877651100 0 013388899998876654
Q ss_pred HHHhCCCCeEEEecchh------hcccCCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTSTL------AAGVNLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~~l------~~Gvnlp~~~vVI~~ 290 (693)
+.+..+..+|+|+|+-- ...+++....+||.+
T Consensus 128 ~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 128 EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 33455677999999631 223566776666554
No 194
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=64.52 E-value=10 Score=45.11 Aligned_cols=71 Identities=7% Similarity=0.069 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccC
Q psy15878 530 FFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCR 601 (693)
Q Consensus 530 ~~~a~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~ 601 (693)
+..+-+.+.|.++.|..+|++.-.+.-|++=+...+...++..+..-++.+|. -.+......-...++-||
T Consensus 932 ~~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~-~~l~~~~~~a~~~i~R~i 1002 (1010)
T 2xgj_A 932 HELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGN-SSLKEKMEAVLKLIHRDI 1002 (1010)
T ss_dssp CTTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHhccCCe
Confidence 34456689999999999999999999999999999999999999999988875 345555555555554443
No 195
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=64.28 E-value=22 Score=33.19 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=63.7
Q ss_pred HHHHHhhhCcc---hhhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCC
Q psy15878 572 KVYRFCEELPE---LWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHL 648 (693)
Q Consensus 572 ~~~~~~~~~~~---~~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~ 648 (693)
.+.+||+..+- .|++. -...|..|+.. ..+.|+.=+ .+...--..|.++|+--..+|..++|.-|.. + |+
T Consensus 108 ~A~~~A~~~~I~Li~wd~p-~g~~L~~~i~~---~~l~pi~~l-~~~~~e~~~l~~~~~v~~k~~~~~~~~~l~~-~-gi 180 (199)
T 1y88_A 108 EAKKYAGCVGIKLTGWSYP-EKEGIEVLLES---KGLYPITIL-RIDKEVLDELVRAGLVFCRDVVSAGEEKLRE-I-GL 180 (199)
T ss_dssp HHHHHHHHHTCEEECSSCS-TTTSHHHHHHT---TTCCBGGGS-SCCHHHHHHHHHTTCCBHHHHHHHCHHHHHH-T-TC
T ss_pred HHHHHHHHCCcEEEECCCC-chHHHHHHHHH---cCCCCeEEE-eeCHHHHhhhhcCCcEEEehhhhcChHHHHH-c-CC
Confidence 34445554441 25543 24556666653 234555555 7888999999999999999999999888887 5 99
Q ss_pred CHHHHHHHHHHHHhhhh
Q psy15878 649 PLRSARNLISAAKLHFI 665 (693)
Q Consensus 649 ~~~~a~~i~~~a~~~~~ 665 (693)
+.+..++|++.|+.++.
T Consensus 181 ~~~~~~~i~~~~~~l~~ 197 (199)
T 1y88_A 181 SAKKAREVIAEAKKVIG 197 (199)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc
Confidence 99999999999988764
No 196
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=60.81 E-value=18 Score=37.30 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=44.6
Q ss_pred CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhh---hhHHHH----HHHHHHHHhcCcccccc
Q psy15878 626 GYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKM---DKVEAM----KNLIQNLQKNYDNIVHN 691 (693)
Q Consensus 626 g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~ 691 (693)
.|-|+++|+.++.++..+.+ |+|.| |+.|++.|+.+.. ++ ...+.+ .+++.+.|.++|||=.-
T Consensus 195 ~fPtpe~La~~~~ee~Lr~~-Gl~~R-A~~I~~~A~~i~~-~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~ 264 (360)
T 2xhi_A 195 GFPSLQALAGPEVEAHLRKL-GLGYR-ARYVSASARAILE-EQGGLAWLQQLRESSYEEAHKALCILPGVGTC 264 (360)
T ss_dssp CCCCHHHHTSTTHHHHHHHT-TCTTH-HHHHHHHHHHHHH-TTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHH
T ss_pred cCCCHHHHHcCCHHHHHHHc-CCcHH-HHHHHHHHHHHHh-ccCCccCHHHHhcCCHHHHHHHHHhCCCCCHH
Confidence 58999999999887666656 89865 9999999987754 11 011211 34777888899998543
No 197
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=59.65 E-value=32 Score=31.56 Aligned_cols=75 Identities=13% Similarity=0.079 Sum_probs=47.7
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.+|++.-+..+++.+.. ... ...+...+|+.+...+...
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~--~~~--------------------------------~~~~~~~~~~~~~~~~~~~ 116 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTA--VAP--------------------------------HLKVVAVYGGTGYGKQKEA 116 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHH--HCT--------------------------------TSCEEEECSSSCSHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHH--Hhh--------------------------------cceEEEEECCCChHHHHHH
Confidence 356899999999999998888776 210 0237788888876544332
Q ss_pred HHHHhCCCCeEEEecch-----hhc-ccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTST-----LAA-GVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~-----l~~-Gvnlp~~~vVI~~ 290 (693)
.. ...+|+|+|+- +.. .+++....+||.+
T Consensus 117 ~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViD 151 (207)
T 2gxq_A 117 LL----RGADAVVATPGRALDYLRQGVLDLSRVEVAVLD 151 (207)
T ss_dssp HH----HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEE
T ss_pred hh----CCCCEEEECHHHHHHHHHcCCcchhhceEEEEE
Confidence 22 24689999962 222 3455665555543
No 198
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=59.61 E-value=6.6 Score=32.16 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.7
Q ss_pred cchhhhhcCCCCCHHHHHHHHHcCC
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNAGY 627 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~g~ 627 (693)
..+-+|.++||||++++.+|+++|.
T Consensus 67 ~s~edL~~v~Gig~k~~~~l~~~g~ 91 (98)
T 2edu_A 67 SQVEDLERVEGITGKQMESFLKANI 91 (98)
T ss_dssp SSGGGGGGSTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHCcC
Confidence 5556689999999999999999983
No 199
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=59.59 E-value=9 Score=38.45 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=37.2
Q ss_pred CCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHH-HHHHHHHHhcCccccc
Q psy15878 627 YSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAM-KNLIQNLQKNYDNIVH 690 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 690 (693)
|-|+++|+.+++++|.. + |++.+.|+.|++.|+. . .++....+ .+++.+.|.+++||=.
T Consensus 161 fPtp~~la~~~~~~Lr~-~-G~~~rKa~~i~~~A~~--g-~l~~l~~~~~~e~~~~L~~lpGIG~ 220 (295)
T 2jhn_A 161 FPTQEAILKAGVEGLRE-C-GLSRRKAELIVEIAKE--E-NLEELKEWGEEEAYEYLTSFKGIGR 220 (295)
T ss_dssp CCCHHHHHHHHHHHHHH-T-TCCHHHHHHHHHHHTC--S-SGGGGGGSCHHHHHHHHHTSTTCCH
T ss_pred CCCHHHHHcCCHHHHHH-c-CCCHHHHHHHHHHHHC--C-CHhhhhcCCHHHHHHHHhcCCCcCH
Confidence 67888888888777744 4 7887778888887765 1 12211111 1456666677777743
No 200
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=58.81 E-value=12 Score=35.08 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=21.3
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVA 643 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~ 643 (693)
-.|.++||||++.|++|.=. |.+.++++...
T Consensus 26 ~~l~~LPGIG~KsA~RlA~h-------LL~~~~~~~~~ 56 (212)
T 3vdp_A 26 EELSKLPGIGPKTAQRLAFF-------IINMPLDEVRS 56 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHH-------HTTSCHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHH-------HHcCCHHHHHH
Confidence 34558999999999988755 55555554444
No 201
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=58.40 E-value=9.4 Score=42.30 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=35.2
Q ss_pred hhcCCCCCHHHHHHHHHc---C-CCCHHHHHhcChHHHHH--HhcCCCHHHHHHHHHH
Q psy15878 608 LMDLPGVKIGRARQLLNA---G-YSSLELIARADAKEMVA--KIRHLPLRSARNLISA 659 (693)
Q Consensus 608 l~~i~gi~~~~a~~L~~~---g-~~s~~~l~~a~~~~l~~--~~~~~~~~~a~~i~~~ 659 (693)
+.++||+|...+...++. | +.-.+.+....++.+.. .++|+|+|+|.+|++.
T Consensus 59 ~~~lp~iG~~~~~~i~~~v~~g~~~~~~~~~~~~~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 59 FTGIPKVGKGIAAELSDFARSGTFAPLEAAAGQLPPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp CCSSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hhhcCCCChhHHHHHHHHHcCChHHHHHHHhhhhHHHHHHHhCCCCcCHHHHHHHHHc
Confidence 889999999988776654 3 33334444434443322 2689999999999975
No 202
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=57.81 E-value=23 Score=28.67 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~ 434 (693)
...+...++.|.+.|+|+... +.+.+|+.|+.+...
T Consensus 34 ~~~~~~~l~~L~~~GLI~~~~--~~~~LT~kG~~~l~~ 69 (95)
T 1r7j_A 34 YALTGRYIKMLMDLEIIRQEG--KQYMLTKKGEELLED 69 (95)
T ss_dssp HHHHHHHHHHHHHTTSEEEET--TEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEC--CeeEEChhHHHHHHH
Confidence 345678899999999999764 349999999877543
No 203
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=53.73 E-value=47 Score=31.85 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=49.3
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
+.++||.+|++.-+..+++.+... . ......+...+|+.+..++....
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~--~------------------------------~~~~~~~~~~~g~~~~~~~~~~~ 158 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEAL--G------------------------------SSIGVQSAVIVGGIDSMSQSLAL 158 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHH--H------------------------------GGGTCCEEEECTTSCHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHH--h------------------------------ccCCeeEEEEECCCChHHHHHHh
Confidence 457999999999998888777651 0 00113478889998866544322
Q ss_pred HHHhCCCCeEEEecch-----hh--cccCCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTST-----LA--AGVNLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~~-----l~--~Gvnlp~~~vVI~~ 290 (693)
.+..+|+|+|+- +. .++++....+||.+
T Consensus 159 ----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 159 ----AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp ----HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred ----cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 245789999952 11 34566776665553
No 204
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=53.39 E-value=6.5 Score=40.91 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=40.9
Q ss_pred HHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhcCcccccc
Q psy15878 622 LLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKLHFITKMDKVEAMKNLIQNLQKNYDNIVHN 691 (693)
Q Consensus 622 L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (693)
|.+. |-|+++|+.|+++++.+.++++|. +.|+.|.+.|+.+... +.. .+ .++.+.|.++|||=+-
T Consensus 64 l~~~-~pt~~~la~a~~~~l~~~i~~~G~~~ra~~l~~~a~~~~~~-~~g--~~-p~~~~~L~~l~GIG~~ 129 (369)
T 3fsp_A 64 FIDR-FPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTR-YGG--KV-PDDPDEFSRLKGVGPY 129 (369)
T ss_dssp HHHH-CCSHHHHHTSCHHHHHHTTTTSSCTHHHHHHHHHHHHHHHH-HTT--CC-CCSHHHHHTSTTCCHH
T ss_pred HHHH-CCCHHHHHCCCHHHHHHHHHhcChHHHHHHHHHHHHHHHHH-cCC--CC-hhHHHHHhcCCCcCHH
Confidence 4444 779999999999998887765442 2588888888766441 110 01 1234556677877543
No 205
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=52.04 E-value=20 Score=35.56 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=45.8
Q ss_pred CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHHHHhcCcccccc
Q psy15878 626 GYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFITKMD-KVEAMKNLIQNLQKNYDNIVHN 691 (693)
Q Consensus 626 g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 691 (693)
-|-|+++|+.+++++|.. + |+....|+.|++-|+.+..-.++ +...-.+++.+.|.+++||=.-
T Consensus 154 ~fPtp~~la~~~~~~Lr~-~-G~~~~ra~~i~~~A~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~ 218 (282)
T 1mpg_A 154 CFPTPQRLAAADPQALKA-L-GMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRW 218 (282)
T ss_dssp CCCCHHHHHTCCHHHHHH-T-TSCHHHHHHHHHHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHH
T ss_pred cCCCHHHHHcCCHHHHHH-c-CCCHHHHHHHHHHHHHHHcCCCCccccCCHHHHHHHHhcCCCcCHH
Confidence 478999999999999954 5 88888899999999877541111 0001234677788889998543
No 206
>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}
Probab=51.67 E-value=11 Score=29.74 Aligned_cols=43 Identities=9% Similarity=0.199 Sum_probs=35.9
Q ss_pred HHHHHHcCCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15878 619 ARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLH 663 (693)
Q Consensus 619 a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a~~~ 663 (693)
+....++||.|++.|+..+.++|.+ + |+.....++|..+++.+
T Consensus 22 ~d~F~~~G~~sl~~V~~lt~eDL~~-m-GIt~gHqkkIl~siq~l 64 (82)
T 2y9t_A 22 LDYFTTQGLTTIYQIEHYSMDDLAS-L-KIPEQFRHAIWKGILDH 64 (82)
T ss_dssp HHHHHTTTCCBSGGGTTCCHHHHHH-T-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHhcCHHHHHh-c-CCChhhHHHHHhhHHHH
Confidence 4455666999999999999999999 4 89987778999888654
No 207
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=51.38 E-value=27 Score=27.08 Aligned_cols=59 Identities=15% Similarity=0.321 Sum_probs=40.5
Q ss_pred cchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCC-HHHHHHHHHHHHhhh
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLP-LRSARNLISAAKLHF 664 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~-~~~a~~i~~~a~~~~ 664 (693)
.++.+.++-=|++ .-+..+.++||.+++.+...+.++|.+ + |+. ...-++|+.+++.+.
T Consensus 13 ~~V~eWL~~i~L~-~Y~~~F~~~gy~~~~~~~~lt~~DL~~-l-GI~~~ghrkkil~ai~~L~ 72 (78)
T 1v38_A 13 QTIQEFLERIHLQ-EYTSTLLLNGYETLDDLKDIKESHLIE-L-NIADPEDRARLLSAAESLL 72 (78)
T ss_dssp CBHHHHHHTTTCG-GGHHHHHHHTCCBHHHHTTCCHHHHHH-T-TTCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCH-HHHHHHHHcCCCCHHHHhhcCHHHHHH-c-CCCCHHHHHHHHHHHHHHH
Confidence 3444444322333 335556777999999999999999988 4 766 466778887776553
No 208
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=50.88 E-value=4.4 Score=31.36 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=23.1
Q ss_pred HHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 632 LIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 632 ~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+|-.|+.++|.. ++|+|++.|++|++.-
T Consensus 20 diN~a~~~~L~~-ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 20 SLNEASLEELMA-LPGIGPVLARRIVEGR 47 (75)
T ss_dssp ETTTCCHHHHTT-STTCCHHHHHHHHHTC
T ss_pred ChhhCCHHHHHh-CCCCCHHHHHHHHHHc
Confidence 466778777777 7899999999999853
No 209
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=49.43 E-value=41 Score=31.89 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=23.1
Q ss_pred HHHHHhcChHHHHHHhcC----CCHHHHHHHHHHHHhh
Q psy15878 630 LELIARADAKEMVAKIRH----LPLRSARNLISAAKLH 663 (693)
Q Consensus 630 ~~~l~~a~~~~l~~~~~~----~~~~~a~~i~~~a~~~ 663 (693)
++.++.++++++.+.++. |....|+.|.+.|+.+
T Consensus 76 p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~i 113 (219)
T 3n0u_A 76 GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLL 113 (219)
T ss_dssp TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGT
T ss_pred HHHHHcCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 566777777777776653 3456777777777654
No 210
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=48.79 E-value=20 Score=33.93 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=14.2
Q ss_pred hhhcCCCCCHHHHHHHHHc
Q psy15878 607 ALMDLPGVKIGRARQLLNA 625 (693)
Q Consensus 607 ~l~~i~gi~~~~a~~L~~~ 625 (693)
.|.+|||||++.|++|.=.
T Consensus 13 ~l~~LPGIG~KSA~RlA~h 31 (228)
T 1vdd_A 13 ELSRLPGIGPKSAQRLAFH 31 (228)
T ss_dssp HHHTSTTCCHHHHHHHHHH
T ss_pred HHhHCCCCCHHHHHHHHHH
Confidence 4557888888888887654
No 211
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=48.51 E-value=12 Score=35.23 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=41.3
Q ss_pred HHHHhcChHHHHHHhc--C--CCHHHHHHHHHHHHhhhhhhhhhHH----HHHHHHHHHHhcCccccccc
Q psy15878 631 ELIARADAKEMVAKIR--H--LPLRSARNLISAAKLHFITKMDKVE----AMKNLIQNLQKNYDNIVHNT 692 (693)
Q Consensus 631 ~~l~~a~~~~l~~~~~--~--~~~~~a~~i~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 692 (693)
+.|+.++++++.+.++ | +....|+.|.+.|+.+...-....+ ...+++.+.|.++|||=+-|
T Consensus 60 ~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kT 129 (207)
T 3fhg_A 60 QKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQE 129 (207)
T ss_dssp GGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHH
T ss_pred HHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHH
Confidence 4578899999988887 6 4557899999999854331001122 23447777888999985433
No 212
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=48.28 E-value=20 Score=42.83 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=49.0
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.+||+.-|..+++.+...... . + .. ....++.+||+.+..+|...
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~-------------------~--~-i~------~~~~v~~~~Gg~~~~~~~~~ 149 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEK-------------------A--G-VG------TENLIGYYHGRIPKREKENF 149 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTT-------------------T--C-CS------GGGSEEECCSSCCSHHHHHH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-------------------c--C-CC------ccceEEEEeCCCChhhHHHH
Confidence 6789999999999999988887751100 0 0 00 00148999999999998877
Q ss_pred HHHHhCCCCeEEEecc
Q psy15878 258 EEAYLAGTLQIICCTS 273 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~ 273 (693)
.+.+++ .+|+|+|+
T Consensus 150 ~~~l~~--~~IlV~TP 163 (1054)
T 1gku_B 150 MQNLRN--FKIVITTT 163 (1054)
T ss_dssp HHSGGG--CSEEEEEH
T ss_pred HhhccC--CCEEEEcH
Confidence 777776 89999997
No 213
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=46.57 E-value=4.3 Score=33.31 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=26.3
Q ss_pred CCCHHHHHhcChHHHHHHhcCCCHHHHHHHHH
Q psy15878 627 YSSLELIARADAKEMVAKIRHLPLRSARNLIS 658 (693)
Q Consensus 627 ~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~ 658 (693)
....-+|-.|+.++|.. ++|+|++.|++|++
T Consensus 14 ~~~~vdiNtAs~~eL~~-lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 14 YGEKIDLNNTNIAAFIQ-YRGLYPTLAKLIVK 44 (97)
T ss_dssp GGTSEETTTSCGGGGGG-STTCTTHHHHHHHH
T ss_pred cCCceeCCcCCHHHHhH-CCCCCHHHHHHHHH
Confidence 44445788899999987 89999999999998
No 214
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=46.21 E-value=31 Score=32.75 Aligned_cols=78 Identities=8% Similarity=-0.014 Sum_probs=42.5
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.+|++.-+..+++.+...+.. ....+...+|+......
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~--------------------------------~~~~~~~~~g~~~~~~~--- 141 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDY--------------------------------MGATCHACIGGTNVRNE--- 141 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT--------------------------------TTCCEEEECC----------
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhh--------------------------------cCceEEEEECCCchHHH---
Confidence 3568999999999999888887661110 01236667777654332
Q ss_pred HHHHhCCCCeEEEecc-----hhhcc-cCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTS-----TLAAG-VNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~-----~l~~G-vnlp~~~vVI~~ 290 (693)
.+.+..+..+|+|+|+ .+..+ +++....+||.+
T Consensus 142 ~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViD 180 (237)
T 3bor_A 142 MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLD 180 (237)
T ss_dssp ------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEE
T ss_pred HHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEEC
Confidence 3345567789999994 23333 455555555543
No 215
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=45.44 E-value=23 Score=23.77 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=22.0
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLN 564 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~ 564 (693)
+.++.+..+||+.+||++..+++.+.
T Consensus 18 ~~~g~s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 18 KLLNVSLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 46789999999999999998886543
No 216
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=45.29 E-value=44 Score=27.80 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=32.5
Q ss_pred HHH-HhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy15878 536 LYD-VLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCE 578 (693)
Q Consensus 536 l~~-~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~ 578 (693)
|+| ++.+.+-.+++++|||+.|.+-.-+..-..++..+..++.
T Consensus 53 LrdyLV~G~srkeaCe~~gV~~syfS~~L~rL~~v~~~V~~l~~ 96 (111)
T 3m8j_A 53 MKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRLTRLNVLVARLAP 96 (111)
T ss_dssp HHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 8899999999999999999887666555555555555553
No 217
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=45.13 E-value=39 Score=31.88 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=46.3
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.+|++.-+...++.+...+.. ....+...||+.+...+...
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~--------------------------------~~~~~~~~~g~~~~~~~~~~ 143 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKN--------------------------------HDFSAGLIIGGKDLKHEAER 143 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTT--------------------------------SSCCEEEECCC--CHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCC--------------------------------CCeeEEEEECCCCHHHHHHh
Confidence 4678999999999999888887662110 01347888998876554332
Q ss_pred HHHHhCCCCeEEEecch-h----hc--ccCCCCcEEEEe
Q psy15878 258 EEAYLAGTLQIICCTST-L----AA--GVNLPAQRVIIR 289 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~-l----~~--Gvnlp~~~vVI~ 289 (693)
. +..+|+|+|+- + .. .+++....+||.
T Consensus 144 ~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 144 I-----NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp H-----TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred C-----CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 2 35789999962 1 11 245555555544
No 218
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=45.00 E-value=40 Score=26.97 Aligned_cols=44 Identities=20% Similarity=0.424 Sum_probs=34.6
Q ss_pred HHHHHHHcCCCCHHHHHhcChHHHHHHhcCCC-HHHHHHHHHHHHhh
Q psy15878 618 RARQLLNAGYSSLELIARADAKEMVAKIRHLP-LRSARNLISAAKLH 663 (693)
Q Consensus 618 ~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~-~~~a~~i~~~a~~~ 663 (693)
-+..+.++||.|.+.|...+.++|.+ + |+. ..--++|+.+++.+
T Consensus 40 Y~~~F~~~g~d~~e~l~~lt~~DL~~-l-GIt~~GHRkkIL~ai~~L 84 (90)
T 3h8m_A 40 YKDNFTAAGYNSLESVARMTIEDVMS-L-GITLVGHQKKIMSSIQTM 84 (90)
T ss_dssp GHHHHHHTTCCSHHHHHTCCHHHHHH-T-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHhhCCHHHHHH-C-CCCCHHHHHHHHHHHHHH
Confidence 34556677999999999999999987 4 765 35677888887654
No 219
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=44.90 E-value=23 Score=33.20 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=27.7
Q ss_pred HHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q psy15878 643 AKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKN 684 (693)
Q Consensus 643 ~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 684 (693)
+.++|+|+|+|+++.=..=+.-. +.+..+++.+.++..+
T Consensus 29 ~~LPGIG~KsA~RlA~hLL~~~~---~~~~~La~al~~~~~~ 67 (212)
T 3vdp_A 29 SKLPGIGPKTAQRLAFFIINMPL---DEVRSLSQAIIEAKEK 67 (212)
T ss_dssp HTSTTCCHHHHHHHHHHHTTSCH---HHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHh
Confidence 34799999999998766533333 6777777777766544
No 220
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=44.37 E-value=44 Score=31.47 Aligned_cols=76 Identities=8% Similarity=-0.043 Sum_probs=49.2
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.+|++.-+...++.+...... .....+..++|+.+..++...
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-------------------------------~~~~~~~~~~g~~~~~~~~~~ 139 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIK-------------------------------MEGLECHVFIGGTPLSQDKTR 139 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-------------------------------STTCCEEEECTTSCHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcc-------------------------------cCCceEEEEeCCCCHHHHHHh
Confidence 3568999999999999888887662110 001347889999987765443
Q ss_pred HHHHhCCCCeEEEecchh------hcccCCCCcEEEEe
Q psy15878 258 EEAYLAGTLQIICCTSTL------AAGVNLPAQRVIIR 289 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l------~~Gvnlp~~~vVI~ 289 (693)
. ...+|+|+|+-- ...+++....+||.
T Consensus 140 ~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 140 L-----KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp T-----TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred c-----cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 2 247899999732 12345556555544
No 221
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=44.22 E-value=14 Score=42.18 Aligned_cols=49 Identities=8% Similarity=0.188 Sum_probs=36.4
Q ss_pred cchhhhhcCCCCCHHHHHHHHHc-----CCCCHHHHHhcChHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNA-----GYSSLELIARADAKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~-----g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
+....|..|||||+..|+.+.+. +|+|.++|.+ ++|+|+++-+++..-.
T Consensus 505 As~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~~---------V~giG~k~~ekl~~FL 558 (785)
T 3bzc_A 505 ASAALLARISGLNSTLAQNIVAHRDANGAFRTRDELKK---------VSRLGEKTFEQAAGFL 558 (785)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG---------STTCCHHHHHHHGGGE
T ss_pred CCHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHh---------cCCCCHHHHHHhhheE
Confidence 35567779999999999987543 7888888864 6688877777654433
No 222
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=44.12 E-value=41 Score=26.69 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=34.3
Q ss_pred HHHHHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHhh
Q psy15878 619 ARQLLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKLH 663 (693)
Q Consensus 619 a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~~ 663 (693)
+..+.++||.+.+.+...+.++|.+ + |+.. .--++|+.+++.+
T Consensus 37 ~~~F~~~g~d~le~l~~lt~~DL~~-L-GIt~~GHRkkIL~ai~~L 80 (86)
T 3kka_C 37 TEHFMAAGYTAIEKVVQMTNDDIKR-I-GVRLPGHQKRIAYSLLGL 80 (86)
T ss_dssp HHHHHHTTCCSHHHHHTCCHHHHHH-T-TCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCChHHHHHhCCHHHHHH-C-CCCCHHHHHHHHHHHHHH
Confidence 4456677999999999999999987 4 6653 6678888888755
No 223
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=43.44 E-value=81 Score=28.72 Aligned_cols=77 Identities=8% Similarity=0.047 Sum_probs=47.5
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.+|++.-+..+++.+...... . -...+...+|+.+..+....
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~--------------------~-----------~~~~~~~~~g~~~~~~~~~~ 118 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKH--------------------M-----------GGAKVMATTGGTNLRDDIMR 118 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTT--------------------S-----------SSCCEEEECSSSCHHHHHHH
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhh--------------------c-----------CCceEEEEeCCccHHHHHHh
Confidence 3568999999999998888877651100 0 01347888998876554322
Q ss_pred HHHHhCCCCeEEEecch-----hhcc-cCCCCcEEEEe
Q psy15878 258 EEAYLAGTLQIICCTST-----LAAG-VNLPAQRVIIR 289 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~-----l~~G-vnlp~~~vVI~ 289 (693)
+ .+..+|+|+|+- +..+ +++....+||.
T Consensus 119 ---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 119 ---L-DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp ---T-TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ---c-CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 1 346789999972 2222 34555555544
No 224
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=43.28 E-value=72 Score=35.09 Aligned_cols=51 Identities=29% Similarity=0.446 Sum_probs=34.4
Q ss_pred hhcCCCCCHHHHHHHHHc---C-CCCHHHHHhcChH---HHHHHhcCCCHHHHHHHHHH
Q psy15878 608 LMDLPGVKIGRARQLLNA---G-YSSLELIARADAK---EMVAKIRHLPLRSARNLISA 659 (693)
Q Consensus 608 l~~i~gi~~~~a~~L~~~---g-~~s~~~l~~a~~~---~l~~~~~~~~~~~a~~i~~~ 659 (693)
+.+|||+|...+...+.- | +.-.+.+....++ .|. .++|+|+|+|.+|...
T Consensus 55 ~~~lp~iG~~~~~~i~~~v~~g~~~l~~~~~~~~~~~~~~l~-~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 55 LMELPGVGPDLAEKILEFLRTGKVRKHEELSRKVPRGVLEVM-EVPGVGPKTARLLYEG 112 (575)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHH-TSTTTCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHHcCcHHHHhhhhhhhHHHHHHHh-cCCCcCHHHHHHHHHh
Confidence 788999999998876654 3 2323333333333 233 3689999999999875
No 225
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=43.02 E-value=52 Score=30.79 Aligned_cols=76 Identities=11% Similarity=0.032 Sum_probs=44.3
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.+|++.-+..+++.+...... ...+...+|+.+..++..
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~- 138 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYK---------------------------------GLKSICIYGGRNRNGQIE- 138 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCT---------------------------------TCCEEEECC------CHH-
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhccc---------------------------------CceEEEEECCCChHHHHH-
Confidence 4678999999999999888887762111 123677888876554332
Q ss_pred HHHHhCCCCeEEEecchh------hcccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTSTL------AAGVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l------~~Gvnlp~~~vVI~~ 290 (693)
.+.. ..+|+|+|+-- ...+++....+||.+
T Consensus 139 --~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViD 174 (228)
T 3iuy_A 139 --DISK-GVDIIIATPGRLNDLQMNNSVNLRSITYLVID 174 (228)
T ss_dssp --HHHS-CCSEEEECHHHHHHHHHTTCCCCTTCCEEEEC
T ss_pred --HhcC-CCCEEEECHHHHHHHHHcCCcCcccceEEEEE
Confidence 2233 37899999621 123556666655543
No 226
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=42.83 E-value=25 Score=33.44 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=22.9
Q ss_pred CccchhhhhcCCCCCHHHHHHHHHcCCCC
Q psy15878 601 RAPNLRALMDLPGVKIGRARQLLNAGYSS 629 (693)
Q Consensus 601 ~~~el~~l~~i~gi~~~~a~~L~~~g~~s 629 (693)
++...-+|++|||||+++|....-.++.-
T Consensus 110 ~p~~~~~L~~lpGIG~~TA~~il~~~~~~ 138 (221)
T 1kea_A 110 VPRNRKAILDLPGVGKYTCAAVMCLAFGK 138 (221)
T ss_dssp CCSCHHHHHTSTTCCHHHHHHHHHHTTCC
T ss_pred chHHHHHHHhCCCCcHHHHHHHHHHhcCC
Confidence 45566789999999999998887665554
No 227
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=42.79 E-value=6 Score=34.27 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=26.3
Q ss_pred CCHHHHHhcChHHHHHHhcCCCHHHHHHHHHH
Q psy15878 628 SSLELIARADAKEMVAKIRHLPLRSARNLISA 659 (693)
Q Consensus 628 ~s~~~l~~a~~~~l~~~~~~~~~~~a~~i~~~ 659 (693)
...-+|-+|+.+++.. ++|+|++.|++|++.
T Consensus 52 ~~kIniNtA~~~eL~~-LpGiGp~~A~~II~~ 82 (134)
T 1s5l_U 52 GEKIDLNNTNIAAFIQ-YRGLYPTLAKLIVKN 82 (134)
T ss_dssp TTSEETTTSCGGGGGG-STTCTHHHHHHHHHT
T ss_pred CCeeeCcccCHHHHHH-CCCCCHHHHHHHHHc
Confidence 3455788899999987 999999999999953
No 228
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=41.61 E-value=13 Score=37.92 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=24.0
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhcCh
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIARADA 638 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~a~~ 638 (693)
.+||||+++|.+|.+. |.|++.|.+.-+
T Consensus 239 Gv~GiG~KtA~kLl~~-~gsle~i~~~~~ 266 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKT-YGDIFRALKALK 266 (336)
T ss_dssp CCTTCCHHHHHHHHHH-HSSHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHH-cCCHHHHHHhCC
Confidence 7999999999999998 679999876533
No 229
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=40.91 E-value=66 Score=31.05 Aligned_cols=77 Identities=13% Similarity=0.054 Sum_probs=49.9
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.+||+.-++..++.+.+.... ....+...+|+.....+..
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~--------------------------------~~~~~~~~~g~~~~~~~~~- 171 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTH--------------------------------HVHTYGLIMGGSNRSAEAQ- 171 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTT--------------------------------CCSCEEEECSSSCHHHHHH-
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhh--------------------------------cCceEEEEECCCCHHHHHH-
Confidence 4678999999999999988888761110 0123777888887655433
Q ss_pred HHHHhCCCCeEEEecc-----hhhc--ccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTS-----TLAA--GVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~-----~l~~--Gvnlp~~~vVI~~ 290 (693)
.+..| .+|+|+|+ .+.. ++++....+||.+
T Consensus 172 --~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 172 --KLGNG-INIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp --HHHHC-CSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred --HhcCC-CCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 23334 78999995 2222 3566766666543
No 230
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=40.37 E-value=87 Score=25.64 Aligned_cols=71 Identities=20% Similarity=0.134 Sum_probs=43.6
Q ss_pred chhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhhhhhhhHHHHHHHHHhhcCCeEeecc--Cc----cEEe
Q psy15878 351 PPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNE--AG----HLSL 424 (693)
Q Consensus 351 ~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~--~~----~~~~ 424 (693)
...+.-.+|..+..+. ....++...+.. ++.. ....+...++.|++.|+|..... ++ .+.+
T Consensus 7 ~g~l~~~IL~~L~~~~-~~gyel~~~l~~-~~~i-----------~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~L 73 (108)
T 3l7w_A 7 ALLIEYLILAIVSKHD-SYGYDISQTIKL-IASI-----------KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHL 73 (108)
T ss_dssp HHHHHHHHHHHHHHSC-EEHHHHHHHHTT-TCCC-----------CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCC-CcHHHHHHHHHH-HhCC-----------CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEE
Confidence 3455666777776542 234455544443 1111 23456778999999999985321 22 3889
Q ss_pred cHHHHHHHHc
Q psy15878 425 TSIAKAAVQA 434 (693)
Q Consensus 425 T~lG~~~~~~ 434 (693)
|+.|+.....
T Consensus 74 T~~G~~~l~~ 83 (108)
T 3l7w_A 74 TDSGEKHLVY 83 (108)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999987654
No 231
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=40.19 E-value=24 Score=27.78 Aligned_cols=43 Identities=9% Similarity=0.232 Sum_probs=33.6
Q ss_pred HHHHHHHcCCCCHHHHHhcChHHHHHHhcCCC-HHHHHHHHHHHHh
Q psy15878 618 RARQLLNAGYSSLELIARADAKEMVAKIRHLP-LRSARNLISAAKL 662 (693)
Q Consensus 618 ~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~-~~~a~~i~~~a~~ 662 (693)
-+..+.++||.|.+.|...+.++|.+ + |+. ..-.++|+.+++.
T Consensus 38 Y~~~F~~~g~~s~e~l~~lt~~DL~~-l-GIt~~GHRkkIL~aiq~ 81 (82)
T 3hil_A 38 YILHFHSAGLDTMECVLELTAEDLTQ-M-GITLPGHQKRILCSIQG 81 (82)
T ss_dssp GHHHHHHTTCCSGGGGTTCCHHHHHH-T-TCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHhcCCHHHHHH-C-CCCCHHHHHHHHHHHHh
Confidence 34456677999999999999999977 5 765 3667888888764
No 232
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=40.15 E-value=51 Score=37.85 Aligned_cols=59 Identities=15% Similarity=0.008 Sum_probs=44.3
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.+++|.+||+.-|...++.+.. +...+...+++..||++..+|...
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~--------------------------------l~~~lgl~v~~i~GG~~~~~r~~~ 161 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRP--------------------------------LFEFLGLTVGINLPGMPAPAKREA 161 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHH--------------------------------HHHHTTCCEEECCTTCCHHHHHHH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHH--------------------------------HHHhcCCeEEEEeCCCCHHHHHHh
Confidence 677999999999998888877655 122233558899999998766654
Q ss_pred HHHHhCCCCeEEEecch
Q psy15878 258 EEAYLAGTLQIICCTST 274 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~ 274 (693)
. ...|+|+|+-
T Consensus 162 ~------~~dIvvgTpg 172 (853)
T 2fsf_A 162 Y------AADITYGTNN 172 (853)
T ss_dssp H------HSSEEEEEHH
T ss_pred c------CCCEEEECCc
Confidence 3 2689999973
No 233
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=39.62 E-value=18 Score=34.49 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=21.2
Q ss_pred CccchhhhhcCCCCCHHHHHHHHHcCCC
Q psy15878 601 RAPNLRALMDLPGVKIGRARQLLNAGYS 628 (693)
Q Consensus 601 ~~~el~~l~~i~gi~~~~a~~L~~~g~~ 628 (693)
++...-+|++|||||+++|....-.++.
T Consensus 104 ~p~~~~~L~~lpGIG~~TA~~il~~a~~ 131 (225)
T 1kg2_A 104 FPETFEEVAALPGVGRSTAGAILSLSLG 131 (225)
T ss_dssp CCCSHHHHHTSTTCCHHHHHHHHHHHHC
T ss_pred chHHHHHHhcCCCCcHHHHHHHHHHhCC
Confidence 4556678999999999998876655333
No 234
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=39.39 E-value=11 Score=42.29 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=25.8
Q ss_pred CCCcEEEEcccchHHHHhchhc------cCCCCcccEEEEecccccCC
Q psy15878 38 NKKSIYICTIEKGSKLIGSLIQ------ENRIDEIGLIVIDEFHMLNE 79 (693)
Q Consensus 38 ~~~~IiV~Tpek~~~Ll~~l~~------~~~l~~i~lvVvDE~H~l~d 79 (693)
..+||||+.+-- +++.... .+...+-.+|||||||.+.|
T Consensus 174 ~~ADvVV~ny~y---lld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 174 PDADIVIAPYAY---FLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPD 218 (620)
T ss_dssp GGCSEEEEEHHH---HTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHH
T ss_pred hcCCEEEeCchh---hcCHHHHHHHHHhhccCcCCeEEEEECCCchHH
Confidence 679999999853 2332211 12235567999999998864
No 235
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=39.09 E-value=17 Score=27.54 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.0
Q ss_pred hhhhhcCCCCCHHHHHHHHHc
Q psy15878 605 LRALMDLPGVKIGRARQLLNA 625 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~ 625 (693)
.-+|..+||||++.|..|+..
T Consensus 45 ~~~L~~i~Gig~~~a~~i~~~ 65 (75)
T 1x2i_A 45 VAELMKVEGIGEKIAKEIRRV 65 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHH
Confidence 356889999999999999865
No 236
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=38.88 E-value=47 Score=31.73 Aligned_cols=75 Identities=8% Similarity=-0.048 Sum_probs=47.2
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
+.++||.+|++.-+..+++.+...... ....+...+|+.+...+...
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~--------------------------------~~~~~~~~~g~~~~~~~~~~- 146 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLN--------------------------------TPLRSCVVYGGADTHSQIRE- 146 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTT--------------------------------SSCCEEEECSSSCSHHHHHH-
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcc--------------------------------CCceEEEEECCCCHHHHHHH-
Confidence 468999999999999888877651110 01237778888876554322
Q ss_pred HHHhCCCCeEEEecchhh------cccCCCCcEEEEe
Q psy15878 259 EAYLAGTLQIICCTSTLA------AGVNLPAQRVIIR 289 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~~l~------~Gvnlp~~~vVI~ 289 (693)
. ....+|+|+|+--- ..+++....+||.
T Consensus 147 --~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 147 --V-QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp --H-SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred --h-CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 2 34578999996321 1245666555554
No 237
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=38.51 E-value=52 Score=27.06 Aligned_cols=60 Identities=10% Similarity=-0.024 Sum_probs=36.8
Q ss_pred hHHHHHHHcCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHhCCC
Q psy15878 496 QTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLN-FDNHQKVAKMYGIQ 555 (693)
Q Consensus 496 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i~-e~~~~~i~~~y~v~ 555 (693)
....+++.+|++..++.+.+.........+++.+.+...+...+.+ +.++.+||...|..
T Consensus 25 ~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~~i~eIA~~~Gf~ 85 (113)
T 3oio_A 25 STDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQQTSKSIVQIGLACGFS 85 (113)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCS
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCC
Confidence 3456788899999988776543100011134444444444444444 78999999888876
No 238
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=38.23 E-value=41 Score=33.96 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=29.1
Q ss_pred CcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCcCCCHH
Q psy15878 64 DEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNIN 113 (693)
Q Consensus 64 ~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSATl~n~~ 113 (693)
...-+|++||+|.+.+ . ..+-.++........+.-+|+.++|+.+++
T Consensus 131 ~~~~ii~lDE~d~l~~--q-~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 131 KRKTLILIQNPENLLS--E-KILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp SCEEEEEEECCSSSCC--T-HHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred CCceEEEEecHHHhhc--c-hHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 3456999999999872 2 223233322212234567889999987654
No 239
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=38.05 E-value=52 Score=32.87 Aligned_cols=99 Identities=8% Similarity=0.049 Sum_probs=54.5
Q ss_pred hHHHHHHHHhhhhCcEEEEeeccCCCCCccc-cc-------c--CCCcEEEEcccc-------hHHHHhchhccCCCCcc
Q psy15878 4 EKYQSLAKAAEEFKFYLEEYAGVKGQYPPTK-RQ-------L--NKKSIYICTIEK-------GSKLIGSLIQENRIDEI 66 (693)
Q Consensus 4 e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~-~~-------~--~~~~IiV~Tpek-------~~~Ll~~l~~~~~l~~i 66 (693)
+.++.|++..+.-...+-.++|..|...... .. . ..++++...++. +..++......+...+.
T Consensus 4 ~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~ 83 (305)
T 2gno_A 4 DQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTR 83 (305)
T ss_dssp CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSS
T ss_pred HHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCc
Confidence 4556666664433356777788665322110 00 0 256888777652 22344433334455778
Q ss_pred cEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEc
Q psy15878 67 GLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 67 ~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lS 106 (693)
+++||||+|.+.. .....++.-+..-++...+|+.+
T Consensus 84 kvviIdead~lt~----~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 84 KYVIVHDCERMTQ----QAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp EEEEETTGGGBCH----HHHHHTHHHHHSCCTTEEEEEEE
T ss_pred eEEEeccHHHhCH----HHHHHHHHHHhCCCCCeEEEEEE
Confidence 9999999999863 23445555554333445555554
No 240
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=37.47 E-value=3.1 Score=42.15 Aligned_cols=52 Identities=31% Similarity=0.408 Sum_probs=38.4
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChH-----H---HHHHh------cCCCHHHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAK-----E---MVAKI------RHLPLRSARNLIS 658 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~-----~---l~~~~------~~~~~~~a~~i~~ 658 (693)
..|++||||++..|..+.+. |.|+..|..|-.+ + ++.-+ +.+|+..+++|.+
T Consensus 233 ~~L~~I~GVs~~~A~~I~~~-ypTp~~L~~Ay~~~~~~~e~~~lL~~l~~g~~~r~IG~~lSrkI~~ 298 (307)
T 2zix_A 233 RQLMQVRGVSGEKAAALVDR-YSTPASLLAAYDACATPKEQETLLSTIKCGRLQRNLGPALSRTLSQ 298 (307)
T ss_dssp HTTTCSTTCCSTTTTTSSSS-SCSHHHHHHHHHCCSSGGGTTTTTSCCCCTTTTCCCCHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHH-cCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCccCHHHHHHHHH
Confidence 45889999999999999988 9999999887553 2 12213 1277777777754
No 241
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=37.34 E-value=1.1e+02 Score=25.36 Aligned_cols=73 Identities=10% Similarity=-0.002 Sum_probs=46.5
Q ss_pred chhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhhhhhhhHHHHHHHHHhhcCCeEeec---cCc----cEE
Q psy15878 351 PPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMN---EAG----HLS 423 (693)
Q Consensus 351 ~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~---~~~----~~~ 423 (693)
...+.-+||..+..+. ...-++...+...-++. .....+-.+++.|++.|+|.... +++ .+.
T Consensus 7 ~g~l~~~IL~~L~~~~-~~Gyei~~~l~~~~~~~----------is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 75 (115)
T 4esb_A 7 KGVLEGCILYIISQEE-VYGYELSTKLNKHGFTF----------VSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYH 75 (115)
T ss_dssp TTTHHHHHHHHHHHSC-EEHHHHHHHHHHTTCTT----------CCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEE
T ss_pred hCHHHHHHHHHHHcCC-CCHHHHHHHHHHcCCCC----------CCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEE
Confidence 3456777888777543 45556666665411111 12345677899999999998532 122 389
Q ss_pred ecHHHHHHHHc
Q psy15878 424 LTSIAKAAVQA 434 (693)
Q Consensus 424 ~T~lG~~~~~~ 434 (693)
+|+.|+.....
T Consensus 76 LT~~G~~~l~~ 86 (115)
T 4esb_A 76 ITDKGLEQLEE 86 (115)
T ss_dssp ECHHHHHHHHH
T ss_pred ECHHHHHHHHH
Confidence 99999987654
No 242
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=37.31 E-value=11 Score=45.28 Aligned_cols=50 Identities=8% Similarity=0.165 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcc
Q psy15878 533 ACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPE 582 (693)
Q Consensus 533 a~~l~~~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~ 582 (693)
.-+.+.|.++.|+.+|++...+.-|++=+...+-..++..+..-++.+|.
T Consensus 1033 ~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~l~q~~~aa~~~g~ 1082 (1108)
T 3l9o_A 1033 MEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGN 1082 (1108)
T ss_dssp HHHHHHHHC----CCGGGTC--CHHHHHHHHHHHHHHHSCCCC----CCC
T ss_pred HHHHHHHhCCCCHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHhhcCC
Confidence 44589999999999999999999999887777777666666655655563
No 243
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=37.22 E-value=56 Score=26.24 Aligned_cols=45 Identities=16% Similarity=0.322 Sum_probs=35.1
Q ss_pred HHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHhhh
Q psy15878 618 RARQLLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKLHF 664 (693)
Q Consensus 618 ~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~~~ 664 (693)
-+..+.++||.+.+.|...+.++|.+ + |+.. ..-++|+.+++.+.
T Consensus 41 Y~~~F~~~g~~~~~~l~~lt~~DL~~-l-GI~~~GhrkkIl~ai~~L~ 86 (94)
T 1b0x_A 41 YKDNFTAAGYTTLEAVVHMSQDDLAR-I-GITAITHQNKILSSVQAMR 86 (94)
T ss_dssp GHHHHHHTTCCSHHHHTTCCHHHHHH-H-TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHhhCCHHHHHH-C-CCCChhHHHHHHHHHHHHH
Confidence 34556677999999999999999988 4 7764 66778888776553
No 244
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=36.94 E-value=56 Score=25.40 Aligned_cols=44 Identities=20% Similarity=0.419 Sum_probs=34.9
Q ss_pred HHHHHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHhhh
Q psy15878 619 ARQLLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKLHF 664 (693)
Q Consensus 619 a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~~~ 664 (693)
+..+.++||.+.+.|...+.++|.+ + |+.. ..-++|+.+++.+.
T Consensus 23 ~~~F~~~~~d~~~~l~~lt~~DL~~-l-GI~~~GhrkkIl~ai~~l~ 67 (81)
T 1ucv_A 23 RDHFAAGGYSSLGMVLRMNAQDVRA-L-GITLMGHQKKILGSIQTMR 67 (81)
T ss_dssp HHHHHHTTCCBHHHHTTCCHHHHHH-H-TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHcCHHHHHh-C-CCCChhHHHHHHHHHHHHH
Confidence 5567777999999999999999987 4 7764 66778887776543
No 245
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=36.78 E-value=75 Score=32.29 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=52.1
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
+.++||.||++.-+..+++.+.+.... . ....+..++|+.+..++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~--------------------~-----------~~~~~~~~~g~~~~~~~~~-- 122 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKY--------------------M-----------PNVKVAVFFGGLSIKKDEE-- 122 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTT--------------------C-----------TTCCEEEECTTSCHHHHHH--
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhh--------------------C-----------CCeEEEEEeCCCCHHHHHH--
Confidence 568999999999999888877651100 0 0134888999988766543
Q ss_pred HHHhCCCCeEEEecchhh------cccCCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTSTLA------AGVNLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~~l~------~Gvnlp~~~vVI~~ 290 (693)
.+..+..+|+|+|+-.- ..+++....+||.+
T Consensus 123 -~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViD 159 (391)
T 1xti_A 123 -VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 159 (391)
T ss_dssp -HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEEC
T ss_pred -HHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEe
Confidence 34557789999996322 23566776666654
No 246
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=36.76 E-value=39 Score=24.80 Aligned_cols=30 Identities=10% Similarity=-0.055 Sum_probs=25.4
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVTSY 568 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~ 568 (693)
++.+.+..+||+.+|++++.+.+....|-.
T Consensus 28 ~~~g~s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 28 QLLGLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478999999999999999999876666544
No 247
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=36.74 E-value=74 Score=26.65 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=50.0
Q ss_pred ccCCchhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhhhhhhhHHHHHHHHHhhcCCeEeecc---Cc---
Q psy15878 347 SHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNE---AG--- 420 (693)
Q Consensus 347 s~l~~~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~---~~--- 420 (693)
+++....+.-.+|.++..+. ...-++...+...+... .....+..+++.|++.|+|..... ++
T Consensus 8 ~~l~~g~l~~~IL~lL~~~p-~~gyel~~~l~~~~~~~----------i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~r 76 (117)
T 3elk_A 8 ERILHGLITLYILKELVKRP-MHGYELQKSMFETTGQA----------LPQGSIYILLKTMKERGFVISESSVNEKGQQL 76 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHSC-EEHHHHHHHHHHHHSCC----------CCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEE
T ss_pred HHHHhhHHHHHHHHHHHcCC-CCHHHHHHHHHHHhCCC----------CCcchHHHHHHHHHHCCCEEEEeeecCCCCCc
Confidence 33333456667777776543 34556666555432211 112346678999999999985321 22
Q ss_pred -cEEecHHHHHHHHcCCCh
Q psy15878 421 -HLSLTSIAKAAVQAGLSH 438 (693)
Q Consensus 421 -~~~~T~lG~~~~~~~l~~ 438 (693)
.+.+|+.|+......+..
T Consensus 77 k~Y~lT~~G~~~l~~~~~~ 95 (117)
T 3elk_A 77 TVYHITDAGKKFLCDHSQA 95 (117)
T ss_dssp EEEEECHHHHHHHHHTSTT
T ss_pred eEEEECHHHHHHHHHHHHH
Confidence 489999999988776543
No 248
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=36.74 E-value=64 Score=26.18 Aligned_cols=55 Identities=9% Similarity=-0.048 Sum_probs=36.7
Q ss_pred HHHHHHHcCccHHHHHHHhc---C-CchhhHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHhCCC
Q psy15878 497 TLRVAEALGVTENLVALNVT---G-KLKDEKKALLCRFFHACILYDVL-NFDNHQKVAKMYGIQ 555 (693)
Q Consensus 497 ~~~~~~~~gi~~~~~~~~~~---~-~~~~~~~~~~~~~~~a~~l~~~i-~e~~~~~i~~~y~v~ 555 (693)
...+++.+|++..++.+.+. | ... +++.+.+...+...+. ...++.+||...|.+
T Consensus 23 ~~~lA~~~~~S~~~l~r~fk~~~G~s~~----~~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~ 82 (107)
T 2k9s_A 23 IASVAQHVCLSPSRLSHLFRQQLGISVL----SWREDQRISQAKLLLSTTRMPIATVGRNVGFD 82 (107)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCcCHH----HHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCC
Confidence 45678889999988877664 4 222 4444444444444444 568999999888876
No 249
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=36.56 E-value=30 Score=32.85 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=21.1
Q ss_pred ccchhhhhcCCCCCHHHHHHHHHcCCCC
Q psy15878 602 APNLRALMDLPGVKIGRARQLLNAGYSS 629 (693)
Q Consensus 602 ~~el~~l~~i~gi~~~~a~~L~~~g~~s 629 (693)
+...-.|++|||||+++|....-.++.-
T Consensus 117 ~~~~~~L~~lpGIG~kTA~~il~~a~~~ 144 (218)
T 1pu6_A 117 EVTREWLLDQKGIGKESADAILCYACAK 144 (218)
T ss_dssp HCCHHHHHTSTTCCHHHHHHHHHHTTCC
T ss_pred hHHHHHHHcCCCcCHHHHHHHHHHHCCC
Confidence 3445568899999999988887776654
No 250
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=36.51 E-value=59 Score=25.30 Aligned_cols=44 Identities=11% Similarity=0.405 Sum_probs=35.1
Q ss_pred HHHHHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHhhh
Q psy15878 619 ARQLLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKLHF 664 (693)
Q Consensus 619 a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~~~ 664 (693)
+..+.++||.+.+.|...+.++|.+ + |+.. ..-++|+.+++.+.
T Consensus 27 ~~~F~~~~~~~~~~l~~lt~~dL~~-l-GI~~~GhrkkIl~ai~~l~ 71 (82)
T 1b4f_A 27 KESFANAGFTSFDVVSQMMMEDILR-V-GVTLAGHQKKILNSIQVMR 71 (82)
T ss_dssp HHHHHHTTCCSHHHHTTCCHHHHHH-T-TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHhCCHHHHHH-c-CCCCHHHHHHHHHHHHHHH
Confidence 5567777999999999999999997 5 7764 66778888776553
No 251
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=36.14 E-value=16 Score=37.35 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=23.0
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhcC
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIARAD 637 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~a~ 637 (693)
.|||||+++|.+|.+. |.|++.|...-
T Consensus 236 gipGiG~KtA~kll~~-~gsle~i~~~~ 262 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQK-HKSIEEIVRRL 262 (341)
T ss_dssp CCTTCCHHHHHHHHHH-HCSHHHHHHHS
T ss_pred CCCCccHHHHHHHHHH-cCCHHHHHHHH
Confidence 3699999999999999 77999887643
No 252
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=36.02 E-value=40 Score=27.34 Aligned_cols=33 Identities=6% Similarity=0.072 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCCCchhHH
Q psy15878 528 CRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQ 560 (693)
Q Consensus 528 ~~~~~a~~l~~~i~e~~~~~i~~~y~v~~g~~~ 560 (693)
.+++.+.++.-+-++.+..++|.+|+|++..+.
T Consensus 35 ~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~ 67 (95)
T 2jrt_A 35 ASRKAAVVKAVIHGLITEREALDRYSLSEEEFA 67 (95)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHH
Confidence 467888888888899999999999999877665
No 253
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=35.71 E-value=1.2e+02 Score=26.43 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+...
T Consensus 78 ~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 120 (159)
T 3s2w_A 78 KGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPD 120 (159)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHH
Confidence 3456788999999999985322 2 248999999988653
No 254
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=35.36 E-value=69 Score=36.80 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=44.0
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.+++|.+||+.-|...++.+.. +...+...+++..||++..+|...
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~--------------------------------l~~~lgl~v~~i~gg~~~~~r~~~ 170 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGK--------------------------------IFEFLGLTVGLNLNSMSKDEKREA 170 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHH--------------------------------HHHHTTCCEEECCTTSCHHHHHHH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHH--------------------------------HHhhcCCeEEEEeCCCCHHHHHHh
Confidence 677899999999999888877654 222333558889999998877654
Q ss_pred HHHHhCCCCeEEEecc
Q psy15878 258 EEAYLAGTLQIICCTS 273 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~ 273 (693)
. ...|+++|+
T Consensus 171 ~------~~dIv~gTp 180 (844)
T 1tf5_A 171 Y------AADITYSTN 180 (844)
T ss_dssp H------HSSEEEEEH
T ss_pred c------CCCEEEECc
Confidence 3 268999997
No 255
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=35.14 E-value=50 Score=30.65 Aligned_cols=41 Identities=15% Similarity=0.309 Sum_probs=25.6
Q ss_pred CcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCc
Q psy15878 64 DEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSAT 108 (693)
Q Consensus 64 ~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSAT 108 (693)
..-.+||+||+|.+.. ..++.++..+........+|+.|..
T Consensus 125 ~~~~vlviDe~~~l~~----~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSR----HSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp SSSEEEEEETGGGSCH----HHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred CCceEEEEECcccccH----HHHHHHHHHHhcCCCceEEEEEeCC
Confidence 4567999999998742 3445555555443445566666543
No 256
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=34.92 E-value=63 Score=25.58 Aligned_cols=57 Identities=16% Similarity=0.351 Sum_probs=37.6
Q ss_pred ccchhhhhcCCCCCHHH-HHHHHHcCCCCHHHHHhcChHHHHHHhcCCC-HHHHHHHHHHHHh
Q psy15878 602 APNLRALMDLPGVKIGR-ARQLLNAGYSSLELIARADAKEMVAKIRHLP-LRSARNLISAAKL 662 (693)
Q Consensus 602 ~~el~~l~~i~gi~~~~-a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~-~~~a~~i~~~a~~ 662 (693)
+.++.+.++- +|=.. +..+.++||.+.+.+...+.++|.+ + |+. ..--++|+.+++.
T Consensus 26 ~~~V~eWL~~--lgL~qY~~~F~~~g~~~le~l~~lt~~DL~~-l-GIt~~GHRkkIL~aI~~ 84 (86)
T 2k4p_A 26 EAGMSAWLRA--IGLERYEEGLVHNGWDDLEFLSDITEEDLEE-A-GVQDPAHKRLLLDTLQL 84 (86)
T ss_dssp SCSSHHHHHT--TTCGGGHHHHHTTTCCCHHHHTTCCHHHHHH-T-TCCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHH--CCCHHHHHHHHHcCCChHHHHHhCCHHHHHH-C-CCCCHHHHHHHHHHHHH
Confidence 3344444432 33333 4445556999999999999999988 4 776 3556677776654
No 257
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=34.78 E-value=30 Score=32.71 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=35.6
Q ss_pred HHHHhcChHHHHHHhcC----CCHHHHHHHHHHHH--hhhhhhhhhHHHHHHHHHHHHh-cCccccccc
Q psy15878 631 ELIARADAKEMVAKIRH----LPLRSARNLISAAK--LHFITKMDKVEAMKNLIQNLQK-NYDNIVHNT 692 (693)
Q Consensus 631 ~~l~~a~~~~l~~~~~~----~~~~~a~~i~~~a~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 692 (693)
+.++.++++++.+.++. |....|+.|++.|+ ..+. .+...... .++.+.|. .+|||=+-|
T Consensus 71 ~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~l~~-~~~~~~~~-~~~re~Ll~~LpGVG~KT 137 (214)
T 3fhf_A 71 DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKD-IVESFENE-KVAREFLVRNIKGIGYKE 137 (214)
T ss_dssp THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHHH-HHHHSSSH-HHHHHHHHHHSTTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHH-HhcccCCc-HHHHHHHHHhCCCCCHHH
Confidence 34788888888887764 44677999998888 3321 11111122 23334444 888885543
No 258
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=34.74 E-value=38 Score=32.09 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=27.3
Q ss_pred HHhcCCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhc
Q psy15878 643 AKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNLQKN 684 (693)
Q Consensus 643 ~~~~~~~~~~a~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 684 (693)
+.++|+|+|+|+++.=..=+.-. +.+..+++.+.++..+
T Consensus 15 ~~LPGIG~KSA~RlA~hLL~~~~---~~~~~La~al~~~~~~ 53 (228)
T 1vdd_A 15 SRLPGIGPKSAQRLAFHLFEQPR---EDIERLASALLEAKRD 53 (228)
T ss_dssp HTSTTCCHHHHHHHHHHHSSSCH---HHHHHHHHHHHHHHHH
T ss_pred hHCCCCCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHhc
Confidence 34899999999998766533333 6777777777665544
No 259
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=34.53 E-value=1.5e+02 Score=25.72 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHhhcCCeEeec--cCc---cEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMN--EAG---HLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~--~~~---~~~~T~lG~~~~~ 433 (693)
...+...++.|++.|+|.... .|. .+.+|+.|+.+..
T Consensus 60 ~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 60 QPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHH
Confidence 345678899999999998432 222 4899999988753
No 260
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=34.41 E-value=67 Score=32.36 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=35.3
Q ss_pred CcEEEEccc------c---hHHHHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcC
Q psy15878 40 KSIYICTIE------K---GSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSA 107 (693)
Q Consensus 40 ~~IiV~Tpe------k---~~~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSA 107 (693)
+++....|+ + +..+++.+...+......++||||+|.+.. .....++..+..-+.+..+|+.|.
T Consensus 74 ~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~----~a~naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 74 PDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD----AAANALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp TTEEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH----HHHHHHHHHHTSCCTTEEEEEEES
T ss_pred CCEEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH----HHHHHHHHHhcCCCCCeEEEEEeC
Confidence 567776664 1 112333332333456789999999999863 233445554433233455555543
No 261
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=34.41 E-value=46 Score=26.03 Aligned_cols=48 Identities=13% Similarity=0.240 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHhh
Q psy15878 613 GVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKLH 663 (693)
Q Consensus 613 gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~~ 663 (693)
|++.- +..+.++||.|.+.|...+.++|.+ + |+.. .--++|+.+++.+
T Consensus 27 gL~qY-~~~F~~~gid~~~~L~~lt~~DL~~-l-GI~~~GhRkkIl~ai~~L 75 (82)
T 2kso_A 27 KMQQY-TEHFMAAGYTAIEKVVQMTNDDIKR-I-GVRLPGHQKRIAYSLLGL 75 (82)
T ss_dssp TCTTH-HHHHHHTTCCSHHHHTTCCHHHHHH-H-HCCCTTHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHcCCChHHHHHhCCHHHHHH-C-CCCChhHHHHHHHHHHHH
Confidence 34433 5667778999999999999999977 4 6553 4557777777654
No 262
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.15 E-value=55 Score=25.92 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=34.7
Q ss_pred HHHHHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHhhh
Q psy15878 619 ARQLLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKLHF 664 (693)
Q Consensus 619 a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~~~ 664 (693)
+..+.++||.+.+.|...+.++|.+ + |+.. ..-++|+.+++.+.
T Consensus 28 ~~~F~~~~~~~~~~l~~lt~~dL~~-l-GI~~~GhRkkIl~ai~~l~ 72 (88)
T 2e8n_A 28 TEHFMAAGYTAIEKVVQMTNDDVKR-I-GVRLPGHQKRIAYSLLGLK 72 (88)
T ss_dssp HHHHHHHTCSSHHHHTTSCTTHHHH-T-TCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHhCCHHHHHH-C-CCCChhHHHHHHHHHHHHH
Confidence 5567777999999999999999987 4 7764 56678887776553
No 263
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=34.14 E-value=32 Score=30.96 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=18.1
Q ss_pred CccchhhhhcCCCCCHHHHHHHH
Q psy15878 601 RAPNLRALMDLPGVKIGRARQLL 623 (693)
Q Consensus 601 ~~~el~~l~~i~gi~~~~a~~L~ 623 (693)
++.+.-+|++|||||+.+|....
T Consensus 99 vp~~~~~L~~LpGVG~yTAdav~ 121 (161)
T 4e9f_A 99 LTKQWKYPIELHGIGKYGNDSYR 121 (161)
T ss_dssp HHSCCSSGGGSTTCCHHHHHHHH
T ss_pred CCCChhhhhcCCCchHHHHHHHH
Confidence 45566788899999999988743
No 264
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=33.96 E-value=77 Score=25.68 Aligned_cols=59 Identities=8% Similarity=-0.066 Sum_probs=37.4
Q ss_pred HHHHHHHcCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHhCCC
Q psy15878 497 TLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNF---DNHQKVAKMYGIQ 555 (693)
Q Consensus 497 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i~e---~~~~~i~~~y~v~ 555 (693)
...+++.+|++..++.+.+.........+++.+.+...+...+.+. .++.+||...|.+
T Consensus 21 ~~~lA~~~~~s~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~ 82 (108)
T 3mn2_A 21 IEKLTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFS 82 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCC
Confidence 4567888999999887765431000112455555555555555554 3899999888876
No 265
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=33.56 E-value=67 Score=26.11 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=35.4
Q ss_pred hHHHHHHHcCccHHHHHHHhc---C-CchhhHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHhCCC
Q psy15878 496 QTLRVAEALGVTENLVALNVT---G-KLKDEKKALLCRFFHACILYDVL-NFDNHQKVAKMYGIQ 555 (693)
Q Consensus 496 ~~~~~~~~~gi~~~~~~~~~~---~-~~~~~~~~~~~~~~~a~~l~~~i-~e~~~~~i~~~y~v~ 555 (693)
....+++.+|++..++.+.+. | ... +++.+.+...+...+. .+.|+.+||...|.+
T Consensus 23 ~~~~lA~~~~~S~~~l~r~fk~~~G~s~~----~~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~ 83 (108)
T 3oou_A 23 SLKTLGNDFHINAVYLGQLFQKEMGEHFT----DYLNRYRVNYAKEELLQTKDNLTIIAGKSGYT 83 (108)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcCHH----HHHHHHHHHHHHHHHHcCCCCHHHHHHHcCCC
Confidence 345678889999998877654 4 222 3344333333333333 367999999888876
No 266
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=33.47 E-value=44 Score=26.59 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhhcCCeEeeccCc---cEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNEAG---HLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~~~---~~~~T~lG~~~~~ 433 (693)
...+...++.|++.|+|.. ..++ .+.+|+.|+.+..
T Consensus 44 ~~tvs~~l~~Le~~Glv~~-~~d~R~~~v~LT~~G~~~~~ 82 (95)
T 2qvo_A 44 HSYVWLIIKKFEEAKMVEC-ELEGRTKIIRLTDKGQKIAQ 82 (95)
T ss_dssp HHHHHHHHHHHHHTTSEEE-EEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCccC-CCCCCeEEEEEChhHHHHHH
Confidence 3456788999999999943 2222 4899999988754
No 267
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.45 E-value=37 Score=27.64 Aligned_cols=45 Identities=29% Similarity=0.347 Sum_probs=35.9
Q ss_pred HHHHHHHcCCCCHHHHHhcChHHHHHHhcCCC-HHHHHHHHHHHHhhh
Q psy15878 618 RARQLLNAGYSSLELIARADAKEMVAKIRHLP-LRSARNLISAAKLHF 664 (693)
Q Consensus 618 ~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~-~~~a~~i~~~a~~~~ 664 (693)
-+..+.++||.+++.+...+.++|.+ + |+. ...-++|+.+++.+.
T Consensus 38 Y~~~F~~~g~d~le~l~~lt~~DL~~-l-GIt~~gHrkkIl~ai~~lr 83 (97)
T 2dl0_A 38 YAGTLSTAGFSTLSQVPSLSHTCLQE-A-GITEERHIRKLLSAARLFK 83 (97)
T ss_dssp GHHHHHHHTCCSTTSGGGCCHHHHHH-H-TCCCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCCcHHHHHhcCHHHHHH-C-CCCCHHHHHHHHHHHHHHH
Confidence 35556677999999999999999988 4 776 567788888887553
No 268
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=32.92 E-value=72 Score=25.61 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=35.2
Q ss_pred hHHHHHHHcCccHHHHHHHhc---C-CchhhHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHhCCC
Q psy15878 496 QTLRVAEALGVTENLVALNVT---G-KLKDEKKALLCRFFHACILYDVLN-FDNHQKVAKMYGIQ 555 (693)
Q Consensus 496 ~~~~~~~~~gi~~~~~~~~~~---~-~~~~~~~~~~~~~~~a~~l~~~i~-e~~~~~i~~~y~v~ 555 (693)
....+++.+|++..++.+.+. | ... +++.+.+...+...+.+ +.++.+||...|..
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk~~~g~s~~----~~~~~~Rl~~A~~lL~~~~~si~~iA~~~Gf~ 81 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFKKNFGIPFQ----DYLLQKRMEKAKLLLLTTELKNYEIAEQVGFE 81 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCS
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcCHH----HHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCC
Confidence 345678889999988877654 3 222 33443333333333333 67899999888875
No 269
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=32.88 E-value=81 Score=24.81 Aligned_cols=32 Identities=13% Similarity=0.045 Sum_probs=26.9
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHHHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFA 570 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a 570 (693)
.+.+.+..+||+.+||+.+.+.+....|-.-+
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 58899999999999999999998777665433
No 270
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=32.50 E-value=39 Score=31.50 Aligned_cols=75 Identities=11% Similarity=-0.029 Sum_probs=40.8
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.+|++.-+..+++.+...... ....+...+|+.+..++...
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~--------------------------------~~~~~~~~~g~~~~~~~~~~ 128 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFH--------------------------------MDIKVHACIGGTSFVEDAEG 128 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT--------------------------------SCCCEEEECC----------
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcc--------------------------------cCceEEEEeCCcchHHHHhc
Confidence 4568999999999999888877651110 01237788888766554322
Q ss_pred HHHHhCCCCeEEEecchh------hcccCCCCcEEEEe
Q psy15878 258 EEAYLAGTLQIICCTSTL------AAGVNLPAQRVIIR 289 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l------~~Gvnlp~~~vVI~ 289 (693)
+ ...+|+|+|+-- ....++....+||.
T Consensus 129 ---~--~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 129 ---L--RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp ---C--TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ---C--CCCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 1 126899998632 22344555555444
No 271
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=32.34 E-value=78 Score=24.64 Aligned_cols=45 Identities=16% Similarity=0.369 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCCHHHHHhcChHHHHHHhcCCC-HHHHHHHHHHHHhhh
Q psy15878 618 RARQLLNAGYSSLELIARADAKEMVAKIRHLP-LRSARNLISAAKLHF 664 (693)
Q Consensus 618 ~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~-~~~a~~i~~~a~~~~ 664 (693)
-+..+.++||.+.+.|...+.++|.+ + |+. ...-++|+.+++.+.
T Consensus 30 Y~~~F~~~~~~~~~~l~~lt~~dL~~-l-GI~~~GhrkkIl~ai~~l~ 75 (83)
T 2qkq_A 30 YEESFAAAGFGSFELVSQISAEDLLR-I-GVTLAGHQKKILASVQHMK 75 (83)
T ss_dssp GHHHHHHTTCCSHHHHTTCCHHHHHH-H-TCCCHHHHHHHHHHHTTC-
T ss_pred HHHHHHHcCCCcHHHHhhCCHHHHHH-C-CCCCHHHHHHHHHHHHHHH
Confidence 45667777999999999999999988 5 887 667788888876553
No 272
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=32.08 E-value=1.5e+02 Score=25.63 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~ 433 (693)
...+..+++.|++.|+|.... +..+.+|+.|+....
T Consensus 68 ~~tvs~~l~~Le~~Glv~r~~-~~~~~lT~~g~~~~~ 103 (155)
T 2h09_A 68 QPTVAKMLKRLATMGLIEMIP-WRGVFLTAEGEKLAQ 103 (155)
T ss_dssp HHHHHHHHHHHHHTTCEEEET-TTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEec-CCceEEChhHHHHHH
Confidence 445778899999999998653 235899999987643
No 273
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=32.00 E-value=26 Score=27.83 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.6
Q ss_pred hhhhcCCCCCHHHHHHHHHc
Q psy15878 606 RALMDLPGVKIGRARQLLNA 625 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~ 625 (693)
-+|.++||||++.|.++++.
T Consensus 51 ~eL~~i~GIG~~~a~~I~~~ 70 (89)
T 1z00_A 51 EDLALCPGLGPQKARRLFDV 70 (89)
T ss_dssp HHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHH
Confidence 46889999999999999865
No 274
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.80 E-value=45 Score=23.77 Aligned_cols=28 Identities=4% Similarity=-0.065 Sum_probs=23.5
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVT 566 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~~~ 566 (693)
+..+.+..+||+.+|++++.+.+....+
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~ 37 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNM 37 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 5789999999999999999988655543
No 275
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=31.69 E-value=69 Score=30.62 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHH------cCCCCHHHHHhcChH----HHHHHhcCCCHHHHHHHHHHH
Q psy15878 613 GVKIGRARQLLN------AGYSSLELIARADAK----EMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 613 gi~~~~a~~L~~------~g~~s~~~l~~a~~~----~l~~~~~~~~~~~a~~i~~~a 660 (693)
|++..+|+.|.+ .|+-+.+.+..++.+ +|. .++|+|+++|+-|.--+
T Consensus 102 G~~~~KA~~I~~~A~~i~~~~~~~~~l~~~p~~~~~~~L~-~lpGIG~kTA~~ill~a 158 (233)
T 2h56_A 102 GVSKRKIEYIRHVCEHVESGRLDFTELEGAEATTVIEKLT-AIKGIGQWTAEMFMMFS 158 (233)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSSCHHHHTTSCHHHHHHHHH-TSTTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHH-hCCCcCHHHHHHHHHHh
Confidence 566655554433 244466666554432 233 36777877777776655
No 276
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=31.63 E-value=61 Score=32.87 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=29.1
Q ss_pred HHHhchhccCCCCcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEc
Q psy15878 52 KLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 52 ~Ll~~l~~~~~l~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lS 106 (693)
.++..+...+......+|||||+|.+.. .....++..+...+.+..+|+.|
T Consensus 106 ~l~~~~~~~~~~~~~~vliiDe~~~l~~----~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 106 DLLDNVQYAPARGRFKVYLIDEVHMLSR----HSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp HHHHHTTSCCSSSSSEEEEEECGGGSCH----HHHHHHHHHHHSCCSSEEEEEEE
T ss_pred HHHHHHhhccccCCeEEEEEECcchhcH----HHHHHHHHHHhcCCCceEEEEEe
Confidence 3444433333445678999999998853 23455555554333445555554
No 277
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=31.62 E-value=1.3e+02 Score=26.31 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~ 433 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+..
T Consensus 74 ~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 74 PQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLN 115 (162)
T ss_dssp GGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHH
Confidence 3456788999999999985322 2 24899999988864
No 278
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=31.49 E-value=1.9e+02 Score=24.11 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+...
T Consensus 61 ~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~ 103 (139)
T 3eco_A 61 GPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEA 103 (139)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHH
T ss_pred cccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHH
Confidence 3456788999999999985322 1 248999999988653
No 279
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=31.38 E-value=75 Score=22.65 Aligned_cols=25 Identities=24% Similarity=0.491 Sum_probs=20.0
Q ss_pred hcCCC----HHHHHHHhCCCchhHHHHHH
Q psy15878 540 LNFDN----HQKVAKMYGIQNSHLQNFLN 564 (693)
Q Consensus 540 i~e~~----~~~i~~~y~v~~g~~~~l~~ 564 (693)
-.+.+ ..+||.+|||++..|++-..
T Consensus 19 ~~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 19 RNDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp HHCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 35678 99999999999988875433
No 280
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=31.35 E-value=22 Score=27.44 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=17.5
Q ss_pred hhhhcCCCCCHHHHHHHHHc
Q psy15878 606 RALMDLPGVKIGRARQLLNA 625 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~ 625 (693)
-+|.++||||++.|.++.+.
T Consensus 56 eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 56 EEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp HHHTTSSSTTSHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHH
Confidence 46889999999999999864
No 281
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=31.18 E-value=1.2e+02 Score=29.00 Aligned_cols=40 Identities=8% Similarity=0.033 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHcCC
Q psy15878 397 TTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGL 436 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~~l 436 (693)
...+...++.|++.|+|........+.+|+.|+.+....-
T Consensus 180 ksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~~~ 219 (244)
T 2wte_A 180 EKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKLNK 219 (244)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHHHh
Confidence 3456788999999999997655567999999999876643
No 282
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=31.03 E-value=35 Score=31.66 Aligned_cols=27 Identities=7% Similarity=0.079 Sum_probs=23.3
Q ss_pred hcChHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15878 635 RADAKEMVAKIRHLPLRSARNLISAAKL 662 (693)
Q Consensus 635 ~a~~~~l~~~~~~~~~~~a~~i~~~a~~ 662 (693)
+|+.++|.. |+|+|++.|++|++.=+.
T Consensus 128 TA~~~eL~~-LpGIG~k~A~~IIeyRe~ 154 (205)
T 2i5h_A 128 TTRMHQLEL-LPGVGKKMMWAIIEERKK 154 (205)
T ss_dssp CSSSBGGGG-STTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHhc-CCCcCHHHHHHHHHHHhc
Confidence 788888865 999999999999987654
No 283
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=30.90 E-value=98 Score=26.30 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhhcCCeEeeccCc-----cEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNEAG-----HLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~~~-----~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+.. .+.+|+.|+.+...
T Consensus 64 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 106 (144)
T 3f3x_A 64 QSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLE 106 (144)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHH
Confidence 345678899999999998643221 48999999988643
No 284
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=30.71 E-value=1.3e+02 Score=25.55 Aligned_cols=36 Identities=28% Similarity=0.171 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAV 432 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~ 432 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+...
T Consensus 59 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 59 KQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 3456788999999999986322 2 2489999998874
No 285
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=30.71 E-value=20 Score=33.55 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=23.8
Q ss_pred ccEEEEecccccCCCC-Ch-HHHHHHHHHHhcc-CCCceEEEEcCcC
Q psy15878 66 IGLIVIDEFHMLNEPQ-RG-PILECVVSKVLYL-KKSIQIFAMSATI 109 (693)
Q Consensus 66 i~lvVvDE~H~l~d~~-rg-~~le~il~~l~~~-~~~~qii~lSATl 109 (693)
-.+|||||||.+.... .+ ... .++..+... ....++|+++-..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~-rll~~l~~~r~~~~~iil~tq~~ 133 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIP-ENVQWLNTHRHQGIDIFVLTQGP 133 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCC-HHHHGGGGTTTTTCEEEEEESCG
T ss_pred ceEEEEEChhhhccCccccchhH-HHHHHHHhcCcCCeEEEEECCCH
Confidence 6799999999983211 01 011 123333221 3456888888774
No 286
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=30.42 E-value=65 Score=25.17 Aligned_cols=27 Identities=4% Similarity=0.147 Sum_probs=23.0
Q ss_pred cCCCHHHHHHHhCCCchhHHHHHHHHH
Q psy15878 541 NFDNHQKVAKMYGIQNSHLQNFLNVTS 567 (693)
Q Consensus 541 ~e~~~~~i~~~y~v~~g~~~~l~~~~~ 567 (693)
.+.+..+||+.+|++++.+.+....|-
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~ 63 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKAL 63 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 689999999999999999997666543
No 287
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=30.14 E-value=1.8e+02 Score=24.64 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|.... ++.+.+|+.|+.....
T Consensus 36 ~~tvs~~l~~Le~~Glv~r~~-~~~~~LT~~g~~~~~~ 72 (142)
T 1on2_A 36 PSSVTKMVQKLDKDEYLIYEK-YRGLVLTSKGKKIGKR 72 (142)
T ss_dssp HHHHHHHHHHHHHTTSEEEET-TTEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEee-CceEEEchhHHHHHHH
Confidence 345678899999999998753 3469999999887654
No 288
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=30.07 E-value=55 Score=32.46 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=22.7
Q ss_pred Cccchhhhhc-CCCCCHHHHHHHHHcCCCC
Q psy15878 601 RAPNLRALMD-LPGVKIGRARQLLNAGYSS 629 (693)
Q Consensus 601 ~~~el~~l~~-i~gi~~~~a~~L~~~g~~s 629 (693)
++.+.-+|++ |||||+++|......+|.-
T Consensus 123 ~p~~~~~Ll~~LpGIG~kTA~~iL~~a~g~ 152 (287)
T 3n5n_X 123 MPRTAETLQQLLPGVGRYTAGAIASIAFGQ 152 (287)
T ss_dssp CCSSHHHHHHHSTTCCHHHHHHHHHHHSCC
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHhcCC
Confidence 5667788998 9999999998876665544
No 289
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=29.99 E-value=27 Score=32.38 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=20.8
Q ss_pred ccchhhhhcCCCCCHHHHHHHHHc--C-CCC-HHH-H--HhcChHHHHHHhcC--CCHHHHHHHHHHH
Q psy15878 602 APNLRALMDLPGVKIGRARQLLNA--G-YSS-LEL-I--ARADAKEMVAKIRH--LPLRSARNLISAA 660 (693)
Q Consensus 602 ~~el~~l~~i~gi~~~~a~~L~~~--g-~~s-~~~-l--~~a~~~~l~~~~~~--~~~~~a~~i~~~a 660 (693)
..+.-.|.++||||+++|.+++.. + +.. ... - .....++...++.. +.++.|+++++.+
T Consensus 103 ~~d~~~L~~vpGIG~K~A~rI~~~lk~k~~~~~~~~~~~~~~~~~ea~~AL~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 103 EGDARLLTSASGVGRRLAERIALELKGKVPPHLLAGEKVESEAAEEAVMALAALGFKEAQARAVVLDL 170 (191)
T ss_dssp TTCHHHHTTSTTCCHHHHHHHHHHHTTTSCSCC-----------------------------------
T ss_pred hCCHHHHHhCCCCCHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345577899999999999999864 2 111 000 0 00112345555544 4556666766665
No 290
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=29.98 E-value=39 Score=31.79 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=21.4
Q ss_pred CccchhhhhcCCCCCHHHHHHHHHcCCC
Q psy15878 601 RAPNLRALMDLPGVKIGRARQLLNAGYS 628 (693)
Q Consensus 601 ~~~el~~l~~i~gi~~~~a~~L~~~g~~ 628 (693)
++...-.|+++||||+++|....-.++.
T Consensus 104 ~~~~~~~L~~l~GIG~~tA~~il~~~~~ 131 (211)
T 2abk_A 104 VPEDRAALEALPGVGRKTANVVLNTAFG 131 (211)
T ss_dssp CCSCHHHHHHSTTCCHHHHHHHHHHHHC
T ss_pred chHHHHHHHhCCCCChHHHHHHHHHHCC
Confidence 4556678999999999998877665433
No 291
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=29.88 E-value=1e+02 Score=32.08 Aligned_cols=76 Identities=14% Similarity=0.025 Sum_probs=51.1
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.||++.-+...++.+.+.... ....+..+||+....++...
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~--------------------------------~~~~v~~~~g~~~~~~~~~~ 98 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNL--------------------------------PPEKIVALTGEKSPEERSKA 98 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCS--------------------------------CGGGEEEECSCSCHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCc--------------------------------chhheEEeeCCcchhhhhhh
Confidence 6889999999999998888888762111 01248899999988876554
Q ss_pred HHHHhCCCCeEEEecchh-hc-----ccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTSTL-AA-----GVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~l-~~-----Gvnlp~~~vVI~~ 290 (693)
.. ..+|+|+|.-. .. .+++...++||.+
T Consensus 99 ~~-----~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 132 (494)
T 1wp9_A 99 WA-----RAKVIVATPQTIENDLLAGRISLEDVSLIVFD 132 (494)
T ss_dssp HH-----HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEE
T ss_pred cc-----CCCEEEecHHHHHHHHhcCCcchhhceEEEEE
Confidence 33 35799999532 21 3455665555543
No 292
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=29.64 E-value=2.2e+02 Score=23.65 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhhhhhhhHHHHHHHHHhhcCCeEeec---cCc----cEEe
Q psy15878 352 PTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMN---EAG----HLSL 424 (693)
Q Consensus 352 ~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~---~~~----~~~~ 424 (693)
..+.-+||.++..+ ....-++...+...-++. .....+-.+++.|++.|+|.... +++ .+.+
T Consensus 10 g~l~~~IL~lL~~~-p~~Gyei~~~l~~~g~~~----------is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L 78 (117)
T 4esf_A 10 GSLEGCVLEIISRR-ETYGYEITRHLNDLGFTE----------VVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSL 78 (117)
T ss_dssp HHHHHHHHHHHHHS-CBCHHHHHHHHHHHTCTT----------CCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEE
T ss_pred ChHHHHHHHHHHcC-CCCHHHHHHHHHHcCCCC----------CCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEE
Confidence 34556677777654 345556666655321111 12345677899999999998532 112 3899
Q ss_pred cHHHHHHHHc
Q psy15878 425 TSIAKAAVQA 434 (693)
Q Consensus 425 T~lG~~~~~~ 434 (693)
|+.|+.....
T Consensus 79 T~~G~~~l~~ 88 (117)
T 4esf_A 79 NEAGRQELEL 88 (117)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999988654
No 293
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=29.47 E-value=1e+02 Score=26.16 Aligned_cols=37 Identities=16% Similarity=-0.023 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~ 433 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+..
T Consensus 65 ~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 106 (142)
T 3ech_A 65 KALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHL 106 (142)
T ss_dssp -CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHH
Confidence 3456788999999999985322 1 23789999988764
No 294
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=29.47 E-value=2.4e+02 Score=26.91 Aligned_cols=101 Identities=16% Similarity=0.258 Sum_probs=56.8
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhhCcchhhhHHHhhhHHHHhhccCccchhhhhcCCCCCHHHHHHHHH
Q psy15878 545 HQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLN 624 (693)
Q Consensus 545 ~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~rl~~g~~~el~~l~~i~gi~~~~a~~L~~ 624 (693)
+.+...|-||++-.-.++...-.. -.-+..++....- .--+-+...-.|+-...-+.-..|..|.||.+.+|..|.+
T Consensus 410 laeltkkegvgrktaerllrafgn-pervkqlarefei--eklasvegvgervlrslvpgyaslisirgidreraerllk 486 (519)
T 2csb_A 410 LAELTKKEGVGRKTAERLLRAFGN-PERVKQLAREFEI--EKLASVEGVGERVLRSLVPGYASLISIRGIDRERAERLLK 486 (519)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHSS-HHHHHHHHHTTCH--HHHHTSTTCSHHHHHHHSTTHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHhhhcccchhHHHHHHHHhCC-HHHHHHHHHHHhH--HHHhhccchHHHHHHHhccchhhheeeccccHHHHHHHHH
Confidence 556677777776655544432111 1112333333321 1111122233333334456667888999999999999988
Q ss_pred cCCCCHHHHHhcChHHHHHHhcCCCHH
Q psy15878 625 AGYSSLELIARADAKEMVAKIRHLPLR 651 (693)
Q Consensus 625 ~g~~s~~~l~~a~~~~l~~~~~~~~~~ 651 (693)
. |..-..+..|..+++-+. |+-..
T Consensus 487 k-yggyskvreagveelred--gltda 510 (519)
T 2csb_A 487 K-YGGYSKVREAGVEELRED--GLTDA 510 (519)
T ss_dssp H-HTSHHHHHTSCHHHHHHT--TCCHH
T ss_pred H-hCChhHHHHhhHHHHHHc--CCcHH
Confidence 7 445566778888877763 55443
No 295
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=29.35 E-value=32 Score=35.77 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHcCCCCHHHHHhcC
Q psy15878 611 LPGVKIGRARQLLNAGYSSLELIARAD 637 (693)
Q Consensus 611 i~gi~~~~a~~L~~~g~~s~~~l~~a~ 637 (693)
|||||+++|..|.+. |.|++.|...-
T Consensus 237 IpGIG~KtA~kLl~~-~gsle~i~~~~ 262 (379)
T 1ul1_X 237 IRGIGPKRAVDLIQK-HKSIEEIVRRL 262 (379)
T ss_dssp CTTCCHHHHHHHHHH-SSSHHHHHTTC
T ss_pred CCCcCHHHHHHHHHH-cCCHHHHHHHH
Confidence 589999999999998 77999987663
No 296
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=29.27 E-value=1.3e+02 Score=27.85 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=37.7
Q ss_pred hHHHHHHHHhhhhCcEEEEeeccCCCCCccc--cc-----cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEecccc
Q psy15878 4 EKYQSLAKAAEEFKFYLEEYAGVKGQYPPTK--RQ-----LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHM 76 (693)
Q Consensus 4 e~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~--~~-----~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE~H~ 76 (693)
+.++.+..+...-.-....++|..|..+..- .. .....++..+...+...+... ...+.+.++||+||+|.
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vliiDe~~~ 115 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTAL--LEGLEQFDLICIDDVDA 115 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGG--GTTGGGSSEEEEETGGG
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--HHhccCCCEEEEecccc
Confidence 3445555554432344556677655433221 10 123556665554432111111 12346678999999998
Q ss_pred cCC
Q psy15878 77 LNE 79 (693)
Q Consensus 77 l~d 79 (693)
+..
T Consensus 116 ~~~ 118 (242)
T 3bos_A 116 VAG 118 (242)
T ss_dssp GTT
T ss_pred ccC
Confidence 864
No 297
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=29.05 E-value=73 Score=25.76 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~~ 434 (693)
+..+...++.|++.|+|+.++++ +.+|+.|+.....
T Consensus 45 rstvsrnl~~L~r~GlVe~~~~D--l~LT~~G~~~l~~ 80 (95)
T 1bja_A 45 NAVVNSNIGVLIKKGLVEKSGDG--LIITGEAQDIISN 80 (95)
T ss_dssp HHHHHHHHHHHHTTTSEEEETTE--EEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeecCCCC--eeeCHhHHHHHHH
Confidence 34567789999999999944333 9999999887644
No 298
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=28.97 E-value=1.1e+02 Score=35.53 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=44.4
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.+++|.++|+.-|...++.+.. +...+...+++..||++..+|...
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~--------------------------------l~~~lGLsv~~i~gg~~~~~r~~~ 198 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGR--------------------------------VHRFLGLQVGVILATMTPDERRVA 198 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHH--------------------------------HHHHTTCCEEECCTTCCHHHHHHH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHH--------------------------------HHhhcCCeEEEEeCCCCHHHHHHh
Confidence 677999999999988888877654 222334558899999998877655
Q ss_pred HHHHhCCCCeEEEecc
Q psy15878 258 EEAYLAGTLQIICCTS 273 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~ 273 (693)
.. ..|+++|+
T Consensus 199 y~------~DIvygTp 208 (922)
T 1nkt_A 199 YN------ADITYGTN 208 (922)
T ss_dssp HH------SSEEEEEH
T ss_pred cC------CCEEEECc
Confidence 42 68999997
No 299
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=28.83 E-value=27 Score=27.91 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.1
Q ss_pred hhhhhcCCCCCHHHHHHHHHc
Q psy15878 605 LRALMDLPGVKIGRARQLLNA 625 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~ 625 (693)
.-+|.++||||++.|.+|++.
T Consensus 63 ~~eL~~i~GIG~~~a~~I~~~ 83 (91)
T 2a1j_B 63 REDLALCPGLGPQKARRLFDV 83 (91)
T ss_dssp HHHHHTSSSCCSHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHH
Confidence 356889999999999999875
No 300
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=28.82 E-value=58 Score=24.13 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=23.5
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVTS 567 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~~~~ 567 (693)
+.++.+..+||+.+|++++.+++....+.
T Consensus 23 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 23 LVQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46889999999999999988886555443
No 301
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=28.76 E-value=96 Score=24.42 Aligned_cols=37 Identities=14% Similarity=0.010 Sum_probs=27.2
Q ss_pred hhH-HHHHHHHHhhcCCeEeeccCc---cEEecHHHHHHHH
Q psy15878 397 TTL-SEIVASLLASKGTMLTMNEAG---HLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~-~~~~l~~L~~~g~i~~~~~~~---~~~~T~lG~~~~~ 433 (693)
... +...++.|++.|+|..+..+. .+.+|+.|+.+..
T Consensus 44 ~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~ 84 (95)
T 2pg4_A 44 EKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAE 84 (95)
T ss_dssp HHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHH
Confidence 344 567799999999998432222 4899999988764
No 302
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=28.74 E-value=2.5e+02 Score=23.29 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAV 432 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~ 432 (693)
...+...++.|++.|+|..... + ..+.+|+.|+...
T Consensus 59 ~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 59 RAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 3456788999999999985422 1 2489999999988
No 303
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=28.66 E-value=1e+02 Score=26.11 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~ 433 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+..
T Consensus 65 ~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 106 (143)
T 3oop_A 65 TPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETT 106 (143)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHH
T ss_pred HhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHH
Confidence 3456788999999999985322 1 24899999998864
No 304
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=28.61 E-value=55 Score=26.18 Aligned_cols=45 Identities=9% Similarity=0.208 Sum_probs=34.6
Q ss_pred HHHHHHHcCCCCHHHHHhcChHHHHHHhcCCC-HHHHHHHHHHHHhhh
Q psy15878 618 RARQLLNAGYSSLELIARADAKEMVAKIRHLP-LRSARNLISAAKLHF 664 (693)
Q Consensus 618 ~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~-~~~a~~i~~~a~~~~ 664 (693)
-+..+.++||.+.+.|...+.++|.+ + |+. ...-++|+.+++.+.
T Consensus 30 Y~~~F~~~g~~~~~~l~~lt~~DL~~-l-GI~~~GHrkkIl~ai~~L~ 75 (91)
T 1x40_A 30 YLLHFHESGFTTVKDCAAINDSLLQK-I-GISPTGHRRRILKQLQIIL 75 (91)
T ss_dssp GHHHHHHHTCCBSGGGGGCCHHHHHH-H-TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHhhcCHHHHHH-C-CCCCHhHHHHHHHHHHHHH
Confidence 34556667999999999999999988 4 776 566778877776553
No 305
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=28.61 E-value=37 Score=32.12 Aligned_cols=59 Identities=14% Similarity=0.232 Sum_probs=28.9
Q ss_pred ccchhhhhcCCC--CCHHHHHHHHHc-CC-CCHHHHHhc-C----hHHHHHHhcCCCHHHHHHHHHHH
Q psy15878 602 APNLRALMDLPG--VKIGRARQLLNA-GY-SSLELIARA-D----AKEMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 602 ~~el~~l~~i~g--i~~~~a~~L~~~-g~-~s~~~l~~a-~----~~~l~~~~~~~~~~~a~~i~~~a 660 (693)
.+|+.++.+=-| .-+.+|+.|.+. .| .-.+.+..+ + .++|.+.++|+|+|+|.-|+..+
T Consensus 78 ~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~ 145 (214)
T 3fhf_A 78 REELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNV 145 (214)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 344444444334 445566666655 21 112333322 2 13344246777777777776655
No 306
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=28.42 E-value=46 Score=31.68 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=21.5
Q ss_pred CccchhhhhcCCCCCHHHHHHHHHcCCC
Q psy15878 601 RAPNLRALMDLPGVKIGRARQLLNAGYS 628 (693)
Q Consensus 601 ~~~el~~l~~i~gi~~~~a~~L~~~g~~ 628 (693)
++...-+|+.|||||+.+|....-.++.
T Consensus 108 ~p~~~~~L~~lpGIG~~TA~~il~~a~g 135 (226)
T 1orn_A 108 VPRDRDELMKLPGVGRKTANVVVSVAFG 135 (226)
T ss_dssp CCSCHHHHTTSTTCCHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHCCCccHHHHHHHHHHHCC
Confidence 4556778999999999998877665433
No 307
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=28.28 E-value=79 Score=23.57 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=23.7
Q ss_pred cCCCHHHHHHHhCCCchhHHHHHHHHHH
Q psy15878 541 NFDNHQKVAKMYGIQNSHLQNFLNVTSY 568 (693)
Q Consensus 541 ~e~~~~~i~~~y~v~~g~~~~l~~~~~~ 568 (693)
.+.+..+||+.+|++++.+.+....|-.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6899999999999999999976665543
No 308
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=28.22 E-value=76 Score=30.30 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=16.0
Q ss_pred CHHHHHhcChHHHHHH---hcCCCHHHHHHHHHHH
Q psy15878 629 SLELIARADAKEMVAK---IRHLPLRSARNLISAA 660 (693)
Q Consensus 629 s~~~l~~a~~~~l~~~---~~~~~~~~a~~i~~~a 660 (693)
+++.+..++.++..+. ++|+|+++|+-|.--+
T Consensus 136 ~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~a 170 (232)
T 4b21_A 136 SKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFT 170 (232)
T ss_dssp CHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 5555555554332222 4566666666555443
No 309
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=28.02 E-value=31 Score=32.37 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=19.3
Q ss_pred ccchhhhhcCCCCCHHHHHHHHH
Q psy15878 602 APNLRALMDLPGVKIGRARQLLN 624 (693)
Q Consensus 602 ~~el~~l~~i~gi~~~~a~~L~~ 624 (693)
..+.-.|.++||||+++|.+++.
T Consensus 104 ~~d~~~L~~vpGIG~K~A~rI~~ 126 (203)
T 1cuk_A 104 REEVGALVKLPGIGKKTAERLIV 126 (203)
T ss_dssp TTCHHHHHTSTTCCHHHHHHHHH
T ss_pred hCCHHHHhhCCCCCHHHHHHHHH
Confidence 34567889999999999999875
No 310
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.95 E-value=85 Score=25.42 Aligned_cols=44 Identities=18% Similarity=0.449 Sum_probs=35.1
Q ss_pred HHHHHHcCCCCHHHHHhcChHHHHHHhcCCCH-HHHHHHHHHHHhhh
Q psy15878 619 ARQLLNAGYSSLELIARADAKEMVAKIRHLPL-RSARNLISAAKLHF 664 (693)
Q Consensus 619 a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~~-~~a~~i~~~a~~~~ 664 (693)
+..+.++||.+.+.|...+.++|.+ + |+.. ..-++|+.+++.+.
T Consensus 38 ~~~F~~~~~~~~~~L~~lt~~DL~~-l-GI~~~GhRkkIl~ai~~l~ 82 (99)
T 2eao_A 38 RDSFLTAGFTSLQLVTQMTSEDLLR-I-GITLAGHQKKILNSIHSMR 82 (99)
T ss_dssp HHHHHHHTCCBHHHHTTCCHHHHHH-H-TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChHHHHhhCCHHHHHH-C-CCCChhHHHHHHHHHHHHH
Confidence 5566777999999999999999988 4 7764 66778888776553
No 311
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=27.79 E-value=83 Score=36.53 Aligned_cols=59 Identities=14% Similarity=0.002 Sum_probs=44.8
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.+++|.+||+.-|...+..+.. +...+...+++..||++..+|...
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~--------------------------------l~~~lGLsv~~i~Gg~~~~~r~~a 166 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGP--------------------------------VYRGLGLSVGVIQHASTPAERRKA 166 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHH--------------------------------HHHTTTCCEEECCTTCCHHHHHHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHH--------------------------------HHHhcCCeEEEEeCCCCHHHHHHH
Confidence 678999999999988888877655 112233458899999998877765
Q ss_pred HHHHhCCCCeEEEecch
Q psy15878 258 EEAYLAGTLQIICCTST 274 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~ 274 (693)
. ...|+++|+-
T Consensus 167 y------~~DIvyGTpg 177 (997)
T 2ipc_A 167 Y------LADVTYVTNS 177 (997)
T ss_dssp H------TSSEEEEEHH
T ss_pred c------CCCEEEECch
Confidence 4 2699999974
No 312
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=27.78 E-value=97 Score=25.25 Aligned_cols=59 Identities=5% Similarity=0.068 Sum_probs=42.3
Q ss_pred cchhhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcChHHHHHHhcCCC-HHHHHHHHHHHHhhh
Q psy15878 603 PNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLP-LRSARNLISAAKLHF 664 (693)
Q Consensus 603 ~el~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~~~l~~~~~~~~-~~~a~~i~~~a~~~~ 664 (693)
.++.+.+.-=|++. -+..+.++||.+.+.|...+.++|.+ + |+. ..--++|+.+++.+.
T Consensus 27 ~~V~~WL~~lgL~q-Y~~~F~~~gid~~~~L~~Lt~eDLke-L-GIt~~GhRkkIL~aI~~Lr 86 (100)
T 2kg5_A 27 LDIAVWLATVHLEQ-YADTFRRHGLATAGAARGLGHEELKQ-L-GISATGHRKRILRLLQTGT 86 (100)
T ss_dssp CBHHHHHGGGTCGG-GHHHHHHTTCCBHHHHTTCCHHHHHH-H-TCCCHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHCCCHH-HHHHHHHcCCChHHHHHhcCHHHHHH-C-CCCChhHHHHHHHHHHHHH
Confidence 34444443225553 36667778999999999999999988 4 776 466778888887654
No 313
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=27.76 E-value=46 Score=33.18 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=17.2
Q ss_pred hhhhhcCCCCCHHHHHHHHHcCCC
Q psy15878 605 LRALMDLPGVKIGRARQLLNAGYS 628 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~g~~ 628 (693)
.-.|+.|||||+.+|....-.++.
T Consensus 209 ~~~L~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 209 YEYLTSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHhcCCCcCHHHHHHHHHHccC
Confidence 455778888888887777666666
No 314
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=27.62 E-value=65 Score=30.03 Aligned_cols=34 Identities=12% Similarity=-0.063 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAV 432 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~ 432 (693)
...+..+++.|.+.|+|+.+. +...+|+.|+..+
T Consensus 44 ~~SV~~~lkkL~e~GLV~~~~--~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 44 EGSVRTLLRKLSHLDIIRSKQ--RGHFLTLKGKEIR 77 (200)
T ss_dssp HHHHHHHHHHHHHTTSEEEC----CEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEeC--CCeEECHHHHHHH
Confidence 345778999999999999765 4599999998775
No 315
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=27.61 E-value=75 Score=32.86 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=27.8
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHHHHHhcCh
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADA 638 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~~l~~a~~ 638 (693)
+-|.++||+|+.++++|.+. |.|++++..+.+
T Consensus 26 L~L~~~~gvG~~~~~~Ll~~-fgs~~~~~~a~~ 57 (382)
T 3maj_A 26 MRLIRAENVGPRTFRSLINH-FGSARAALERLP 57 (382)
T ss_dssp HHHHTSTTCCHHHHHHHHHH-HSSHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHH-cCCHHHHHHcCH
Confidence 66889999999999999999 779988887654
No 316
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=27.57 E-value=65 Score=23.67 Aligned_cols=28 Identities=7% Similarity=0.084 Sum_probs=23.5
Q ss_pred hcCCCHHHHHHHhCCCchhHHHHHHHHH
Q psy15878 540 LNFDNHQKVAKMYGIQNSHLQNFLNVTS 567 (693)
Q Consensus 540 i~e~~~~~i~~~y~v~~g~~~~l~~~~~ 567 (693)
..+.+..+||+.+|++++.+.+....|-
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3789999999999999999987666543
No 317
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=27.57 E-value=1.3e+02 Score=25.72 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+...
T Consensus 71 ~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 113 (148)
T 3jw4_A 71 GASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEE 113 (148)
T ss_dssp --CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHH
Confidence 3446788999999999985321 1 248899999988653
No 318
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=27.19 E-value=1.7e+02 Score=25.44 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+...
T Consensus 81 ~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 123 (161)
T 3e6m_A 81 QSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAE 123 (161)
T ss_dssp HHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHH
Confidence 3456788999999999985322 1 248999999988653
No 319
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=26.82 E-value=1.6e+02 Score=24.54 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--Cc---cEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--AG---HLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~~---~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ +. .+.+|+.|+.+...
T Consensus 62 ~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 104 (138)
T 1jgs_A 62 LGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQ 104 (138)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHH
Confidence 3456788999999999986321 22 38999999987654
No 320
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=26.79 E-value=2.1e+02 Score=23.70 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhhhhhhhHHHHHHHHHhhcCCeEeec---cCc----cEEe
Q psy15878 352 PTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMN---EAG----HLSL 424 (693)
Q Consensus 352 ~~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~---~~~----~~~~ 424 (693)
..+.-++|.++..+. ...-++...+...-++. .....+-.+++.|++.|+|.... +++ .+.+
T Consensus 12 g~l~~~IL~lL~~~p-~~Gyei~~~l~~~g~~~----------is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~l 80 (116)
T 3hhh_A 12 GILEGLVLAIIQRKE-TYGYEITKILNDQGFTE----------IVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRL 80 (116)
T ss_dssp THHHHHHHHHHHHSC-BCHHHHHHHHHTTSCSS----------CCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEE
T ss_pred hhHHHHHHHHHhcCC-CCHHHHHHHHHHcCCCC----------CCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEE
Confidence 345667777777543 45556666665411111 12345667899999999998532 122 3899
Q ss_pred cHHHHHHHHc
Q psy15878 425 TSIAKAAVQA 434 (693)
Q Consensus 425 T~lG~~~~~~ 434 (693)
|+.|+.....
T Consensus 81 T~~G~~~l~~ 90 (116)
T 3hhh_A 81 TSSGEAELAD 90 (116)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999988654
No 321
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=26.77 E-value=38 Score=37.61 Aligned_cols=35 Identities=17% Similarity=0.481 Sum_probs=24.3
Q ss_pred cccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEc
Q psy15878 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMS 106 (693)
Q Consensus 65 ~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lS 106 (693)
.+++|||||++++. ...+..++.. .+...|+|++.
T Consensus 262 ~~d~lIIDEAsml~----~~~~~~Ll~~---l~~~~~liLvG 296 (608)
T 1w36_D 262 HLDVLVVDEASMID----LPMMSRLIDA---LPDHARVIFLG 296 (608)
T ss_dssp SCSEEEECSGGGCB----HHHHHHHHHT---CCTTCEEEEEE
T ss_pred CCCEEEEechhhCC----HHHHHHHHHh---CCCCCEEEEEc
Confidence 67899999999874 2345555543 35667888764
No 322
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=26.52 E-value=24 Score=36.14 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=17.9
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhc
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIARA 636 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~a 636 (693)
.+||||+++|.+|.+. |.|++.|...
T Consensus 238 Gv~GIG~KtA~kLi~~-~gsle~i~~~ 263 (346)
T 2izo_A 238 GIRGIGPERALKIIKK-YGKIEKAMEY 263 (346)
T ss_dssp CSTTCCHHHHHHHHHH-SSCC------
T ss_pred CCCCcCHHHHHHHHHH-cCCHHHHHHH
Confidence 5899999999999998 6688777655
No 323
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=26.23 E-value=1.4e+02 Score=24.72 Aligned_cols=58 Identities=17% Similarity=0.132 Sum_probs=36.8
Q ss_pred HHHHHHHcCccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHhCCC
Q psy15878 497 TLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVL-NFDNHQKVAKMYGIQ 555 (693)
Q Consensus 497 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~i-~e~~~~~i~~~y~v~ 555 (693)
...+++.+|++..++.+.+... .....+++.+.+...+...+. .+.++.+||...|..
T Consensus 26 ~~~lA~~~~~S~~~l~r~fk~~-G~s~~~~~~~~Rl~~A~~lL~~~~~si~eIA~~~Gf~ 84 (120)
T 3mkl_A 26 LARIASELLMSPSLLKKKLREE-ETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYH 84 (120)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCC
Confidence 4567888999998887665431 111124454444444444444 468999999888876
No 324
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=26.04 E-value=43 Score=34.15 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=21.9
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhc
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIARA 636 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~~a 636 (693)
.+||||+++|.+|.+. |.|++.+...
T Consensus 241 gv~GiG~ktA~kli~~-~gsle~il~~ 266 (340)
T 1b43_A 241 GIKGIGLKKALEIVRH-SKDPLAKFQK 266 (340)
T ss_dssp CSTTCCHHHHHHHHHT-CSSGGGGTGG
T ss_pred CCCCccHHHHHHHHHH-cCCHHHHHcC
Confidence 5899999999999998 6788877654
No 325
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=25.98 E-value=67 Score=24.22 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=22.8
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVT 566 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~~~ 566 (693)
+..+.+..+||+.+|++.+.+++....+
T Consensus 28 ~~~g~s~~eIA~~l~is~~tV~~~~~r~ 55 (79)
T 1x3u_A 28 VVAGLPNKSIAYDLDISPRTVEVHRANV 55 (79)
T ss_dssp HTTTCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3789999999999999998888544433
No 326
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=25.95 E-value=53 Score=31.28 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHc------CCCCHHHHHhcChHHHH---HHhcCCCHHHHHHHHHHH
Q psy15878 613 GVKIGRARQLLNA------GYSSLELIARADAKEMV---AKIRHLPLRSARNLISAA 660 (693)
Q Consensus 613 gi~~~~a~~L~~~------g~~s~~~l~~a~~~~l~---~~~~~~~~~~a~~i~~~a 660 (693)
|++..+|+.|.+. |.-+++.+..++.+++. ..++|+|+++|+-|.--+
T Consensus 110 G~~~~KA~~i~~lA~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~ 166 (225)
T 2yg9_A 110 GLSWAKVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFA 166 (225)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 5665555444332 44455555554443222 235788888887776554
No 327
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=25.88 E-value=71 Score=31.42 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=24.6
Q ss_pred ccEEEEecccccCCCC-----ChHHHHHHHHHHhccCCCceEEEEcCc
Q psy15878 66 IGLIVIDEFHMLNEPQ-----RGPILECVVSKVLYLKKSIQIFAMSAT 108 (693)
Q Consensus 66 i~lvVvDE~H~l~d~~-----rg~~le~il~~l~~~~~~~qii~lSAT 108 (693)
-++|++||+|.+.... .......++..+.....+..+|+.|.+
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 3699999999885321 223344455554433445566655443
No 328
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=25.68 E-value=46 Score=23.19 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=21.9
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLN 564 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~ 564 (693)
+.++.+..+||+.+||++..+++...
T Consensus 28 ~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 28 AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999999886543
No 329
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=25.42 E-value=93 Score=25.26 Aligned_cols=38 Identities=5% Similarity=-0.037 Sum_probs=29.0
Q ss_pred HHHHHHh---cCCCHHHHHHHhCCCchhHHHHHHHHHHHHH
Q psy15878 534 CILYDVL---NFDNHQKVAKMYGIQNSHLQNFLNVTSYFAS 571 (693)
Q Consensus 534 ~~l~~~i---~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~ 571 (693)
+.|+-++ .+.+..+|++.+||+++.+.+....|-....
T Consensus 28 i~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR 68 (99)
T 3t72_q 28 LRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 68 (99)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4444444 5789999999999999999988777655443
No 330
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=25.40 E-value=71 Score=24.65 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=22.9
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVT 566 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~~~ 566 (693)
+..+.+..+||+.+|++.+.+.+....+
T Consensus 33 ~~~g~s~~eIA~~l~is~~tV~~~l~r~ 60 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITESTVKVHVKHM 60 (82)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3688999999999999999888555433
No 331
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=25.22 E-value=1.5e+02 Score=24.78 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--Cc---cEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--AG---HLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~~---~~~~T~lG~~~~~ 433 (693)
...+...++.|++.|+|....+ ++ .+.+|+.|+....
T Consensus 57 ~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~ 98 (138)
T 3bpv_A 57 KGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIP 98 (138)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHH
T ss_pred HHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHH
Confidence 3456788999999999986321 22 3889999988764
No 332
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=25.22 E-value=1.4e+02 Score=25.28 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+...
T Consensus 64 ~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 106 (140)
T 3hsr_A 64 SGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSP 106 (140)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHH
T ss_pred hhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHH
Confidence 4456788999999999985422 1 248999999887543
No 333
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=25.20 E-value=95 Score=32.50 Aligned_cols=76 Identities=8% Similarity=0.070 Sum_probs=50.5
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
+.++||.+||+.-+..+++.+.+.... ....+...+||.+..++...
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~--------------------------------~~~~~~~~~gg~~~~~~~~~- 175 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFE--------------------------------SYLKIGIVYGGTSFRHQNEC- 175 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTT--------------------------------SSCCCCEECTTSCHHHHHHH-
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhcc--------------------------------CCcEEEEEECCCCHHHHHHH-
Confidence 568999999999999988877662110 01237788999987665432
Q ss_pred HHHhCCCCeEEEecch-----hhcc-cCCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTST-----LAAG-VNLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~~-----l~~G-vnlp~~~vVI~~ 290 (693)
.. ...+|+|+|+- +..+ +++..+++||.+
T Consensus 176 --l~-~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlD 210 (434)
T 2db3_A 176 --IT-RGCHVVIATPGRLLDFVDRTFITFEDTRFVVLD 210 (434)
T ss_dssp --HT-TCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEE
T ss_pred --hh-cCCCEEEEChHHHHHHHHhCCcccccCCeEEEc
Confidence 22 35789999962 2233 567777766654
No 334
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=25.15 E-value=98 Score=29.42 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=16.6
Q ss_pred hhhhcCCCCCHHHHHHHHHcCCCCHH
Q psy15878 606 RALMDLPGVKIGRARQLLNAGYSSLE 631 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~g~~s~~ 631 (693)
-.|++|||||+.+|....-.++.-++
T Consensus 139 ~~L~~l~GIG~~TA~~ill~~lg~pd 164 (228)
T 3s6i_A 139 ERLTQIKGIGRWTVEMLLIFSLNRDD 164 (228)
T ss_dssp HHHTTSTTCCHHHHHHHHHHTSCCSS
T ss_pred HHHHhCCCcCHHHHHHHHHHhCCCCC
Confidence 45667777777777766655555443
No 335
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=25.01 E-value=1.8e+02 Score=24.88 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--Cc---cEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--AG---HLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~~---~~~~T~lG~~~~~ 433 (693)
...+...++.|++.|+|....+ +. .+.+|+.|+.+..
T Consensus 65 ~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 106 (147)
T 4b8x_A 65 PTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVE 106 (147)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHH
Confidence 3456788999999999985322 22 4899999998764
No 336
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=24.75 E-value=39 Score=24.92 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=16.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHH
Q psy15878 640 EMVAKIRHLPLRSARNLISAA 660 (693)
Q Consensus 640 ~l~~~~~~~~~~~a~~i~~~a 660 (693)
.....++|+|++..+.+++..
T Consensus 4 s~L~~IpGIG~kr~~~LL~~F 24 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHHV 24 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHHC
T ss_pred hHHHcCCCCCHHHHHHHHHHc
Confidence 344558999999999999865
No 337
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=24.71 E-value=1.7e+02 Score=29.84 Aligned_cols=77 Identities=10% Similarity=0.031 Sum_probs=49.6
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.+|++.-+..+++.+...+.. ....+...+|+....++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~--------------------------------~~~~~~~~~g~~~~~~~~~~ 151 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDY--------------------------------MNVQCHACIGGTNVGEDIRK 151 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT--------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcc--------------------------------CCeEEEEEECCCCHHHHHHH
Confidence 4679999999999999888877652110 11337778888877665433
Q ss_pred HHHHhCCCCeEEEecc-----hhhc-ccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTS-----TLAA-GVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~-----~l~~-Gvnlp~~~vVI~~ 290 (693)
.. ...+|+|+|+ .+.. .+++....+||.+
T Consensus 152 ~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 152 LD----YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp HH----HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred hh----cCCCEEEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 22 2358999995 3333 3556666665553
No 338
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=24.61 E-value=1.2e+02 Score=25.43 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=36.0
Q ss_pred HHHHHHHcCccHHHHHHHhc---C-CchhhHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHhCCC
Q psy15878 497 TLRVAEALGVTENLVALNVT---G-KLKDEKKALLCRFFHACILYDVL-NFDNHQKVAKMYGIQ 555 (693)
Q Consensus 497 ~~~~~~~~gi~~~~~~~~~~---~-~~~~~~~~~~~~~~~a~~l~~~i-~e~~~~~i~~~y~v~ 555 (693)
...+++.+|++..++.+.+. | ... +++.+.+...+...+. .+.++.+||...|..
T Consensus 30 l~~lA~~~~~S~~~l~r~fk~~~G~s~~----~~l~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~ 89 (129)
T 1bl0_A 30 LEKVSERSGYSKWHLQRMFKKETGHSLG----QYIRSRKMTEIAQKLKESNEPILYLAERYGFE 89 (129)
T ss_dssp CHHHHHHSSSCHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHCcCHH----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCC
Confidence 34678889999988877654 4 222 4444444444444444 468999999888876
No 339
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=24.44 E-value=1.2e+02 Score=31.19 Aligned_cols=75 Identities=7% Similarity=0.052 Sum_probs=48.7
Q ss_pred CceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHHH
Q psy15878 180 LMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEE 259 (693)
Q Consensus 180 ~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve~ 259 (693)
.++||.+|++.-+..+++.+.+.... ....+...||+.+..++..
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~--------------------------------~~~~~~~~~g~~~~~~~~~--- 146 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYR--------------------------------SRVRPCVVYGGADIGQQIR--- 146 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTT--------------------------------SSCCEEEECSSSCHHHHHH---
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCc--------------------------------CCceEEEEECCCCHHHHHH---
Confidence 57999999999999888887651110 0123788899988765432
Q ss_pred HHhCCCCeEEEecch-----hhc-ccCCCCcEEEEec
Q psy15878 260 AYLAGTLQIICCTST-----LAA-GVNLPAQRVIIRD 290 (693)
Q Consensus 260 ~f~~g~i~VLvaT~~-----l~~-Gvnlp~~~vVI~~ 290 (693)
.+. ...+|+|+|+- +.. .+++....+||.+
T Consensus 147 ~~~-~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViD 182 (417)
T 2i4i_A 147 DLE-RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 182 (417)
T ss_dssp HHT-TCCSEEEECHHHHHHHHHTTSBCCTTCCEEEES
T ss_pred Hhh-CCCCEEEEChHHHHHHHHcCCcChhhCcEEEEE
Confidence 222 34689999972 222 2566666666654
No 340
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=24.44 E-value=42 Score=26.71 Aligned_cols=20 Identities=15% Similarity=-0.074 Sum_probs=17.1
Q ss_pred hhhhcCCCCCHHHHHHHHHc
Q psy15878 606 RALMDLPGVKIGRARQLLNA 625 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~~ 625 (693)
.++..|+|||++++.+|-+.
T Consensus 58 ~e~~~L~giG~ki~~~L~e~ 77 (87)
T 2kp7_A 58 KEAKILQHFGDRLCRMLDEK 77 (87)
T ss_dssp HHHHTCTTTCHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHHHHHH
Confidence 56789999999999998764
No 341
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=24.42 E-value=58 Score=38.40 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=30.2
Q ss_pred hhhhcCCCCCHHHHHHHHH-----c-CCCCHHHHHhcChHHHHHHhcCCCHHHHHHH
Q psy15878 606 RALMDLPGVKIGRARQLLN-----A-GYSSLELIARADAKEMVAKIRHLPLRSARNL 656 (693)
Q Consensus 606 ~~l~~i~gi~~~~a~~L~~-----~-g~~s~~~l~~a~~~~l~~~~~~~~~~~a~~i 656 (693)
..|..|||+||..|.++.+ + .|+|.++|.+ ++|+|+++-++.
T Consensus 717 ~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~---------v~~iG~k~fe~~ 764 (1030)
T 3psf_A 717 SALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLIT---------HNILHKTIFMNS 764 (1030)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHHH---------TTSSCHHHHHHH
T ss_pred HHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHh---------cCCccHHHHHhc
Confidence 3455899999999999842 2 6888887765 567777665544
No 342
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=24.37 E-value=94 Score=26.70 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAV 432 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~ 432 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+.
T Consensus 69 ~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 69 SNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 3456788999999999985321 1 2489999998875
No 343
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=24.16 E-value=1.7e+02 Score=24.53 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--Cc---cEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--AG---HLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~~---~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ +. .+.+|+.|+.....
T Consensus 61 ~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 103 (145)
T 2a61_A 61 KSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEK 103 (145)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred chhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHH
Confidence 3456788999999999986421 11 48999999887643
No 344
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=24.09 E-value=82 Score=31.99 Aligned_cols=59 Identities=12% Similarity=-0.032 Sum_probs=41.2
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.+|++.-+..+++.+.+.... ....+...+|+.+..++...
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~--------------------------------~~~~~~~~~g~~~~~~~~~~ 135 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFH--------------------------------MDIKVHACIGGTSFVEDAEG 135 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT--------------------------------SCCCEEEECSSCCHHHHHHH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhcc--------------------------------CCeeEEEEeCCCchHHHHhh
Confidence 4568999999999998888877651100 01347888999887665544
Q ss_pred HHHHhCCCCeEEEecc
Q psy15878 258 EEAYLAGTLQIICCTS 273 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~ 273 (693)
.. ..+|+|+|+
T Consensus 136 ~~-----~~~i~v~T~ 146 (394)
T 1fuu_A 136 LR-----DAQIVVGTP 146 (394)
T ss_dssp HH-----HCSEEEECH
T ss_pred cC-----CCCEEEECH
Confidence 33 357999995
No 345
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=23.96 E-value=2.7e+02 Score=22.93 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhhhhhhhHHHHHHHHHhhcCCeEeec---cCc----cEEec
Q psy15878 353 TLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMN---EAG----HLSLT 425 (693)
Q Consensus 353 ~l~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~---~~~----~~~~T 425 (693)
.+.-.+|..+..+. ...-++...+...+.... ......+..+++.|++.|+|.... .++ .+.+|
T Consensus 12 ~l~~~IL~~L~~~~-~~Gyei~~~l~~~~~~~~--------~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT 82 (116)
T 3f8b_A 12 QTNVILLNVLKQGD-NYVYGIIKQVKEASNGEM--------ELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLT 82 (116)
T ss_dssp HHHHHHHHHHHHCC-BCHHHHHHHHHHHTTTCC--------CCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEEC
T ss_pred hHHHHHHHHHHhCC-CCHHHHHHHHHHHhCCCC--------CCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEEC
Confidence 45556677666543 355566666654322110 113345677899999999998532 122 38999
Q ss_pred HHHHHHHHc
Q psy15878 426 SIAKAAVQA 434 (693)
Q Consensus 426 ~lG~~~~~~ 434 (693)
+.|+.....
T Consensus 83 ~~G~~~l~~ 91 (116)
T 3f8b_A 83 EIGHENMRL 91 (116)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 346
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=23.82 E-value=1.1e+02 Score=23.84 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.7
Q ss_pred cCCCHHHHHHHhCCCchhHHHHHH
Q psy15878 541 NFDNHQKVAKMYGIQNSHLQNFLN 564 (693)
Q Consensus 541 ~e~~~~~i~~~y~v~~g~~~~l~~ 564 (693)
++.+..+||..|||++..+++-+.
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 678999999999999999986544
No 347
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=23.70 E-value=1.7e+02 Score=29.74 Aligned_cols=77 Identities=13% Similarity=0.072 Sum_probs=49.5
Q ss_pred cCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHH
Q psy15878 178 GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257 (693)
Q Consensus 178 ~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~v 257 (693)
.+.++||.+|++.-+...++.+...... ....+...+|+....+....
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~--------------------------------~~~~~~~~~g~~~~~~~~~~ 135 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKH--------------------------------CGISCMVTTGGTNLRDDILR 135 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT--------------------------------TTCCEEEECSSSCHHHHHHH
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcc--------------------------------cCceEEEEeCCcchHHHHHH
Confidence 3568999999999998888877651100 01237778888776543221
Q ss_pred HHHHhCCCCeEEEecch-----hhc-ccCCCCcEEEEec
Q psy15878 258 EEAYLAGTLQIICCTST-----LAA-GVNLPAQRVIIRD 290 (693)
Q Consensus 258 e~~f~~g~i~VLvaT~~-----l~~-Gvnlp~~~vVI~~ 290 (693)
..+..+|+|+|+- +.. ..++....+||.+
T Consensus 136 ----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 136 ----LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp ----TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred ----hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 2466789999952 233 3566776666654
No 348
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.65 E-value=1.7e+02 Score=24.66 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+...
T Consensus 66 ~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 108 (146)
T 2fbh_A 66 GPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIAD 108 (146)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHH
T ss_pred hhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHH
Confidence 3456788999999999986422 1 138999999887643
No 349
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=23.42 E-value=62 Score=30.29 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=34.7
Q ss_pred CccchhhhhcCCC--CCHHHHHHHHHc-C-CC-----CHHHHHhcChHHHHH---HhcCCCHHHHHHHHHH
Q psy15878 601 RAPNLRALMDLPG--VKIGRARQLLNA-G-YS-----SLELIARADAKEMVA---KIRHLPLRSARNLISA 659 (693)
Q Consensus 601 ~~~el~~l~~i~g--i~~~~a~~L~~~-g-~~-----s~~~l~~a~~~~l~~---~~~~~~~~~a~~i~~~ 659 (693)
-.+++.++.+--| .-+.+|+.|.+. . +. +++.+...+|++..+ .++|+|+++|.-|...
T Consensus 66 ~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 66 NEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQEASHFLRN 136 (207)
T ss_dssp CHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 3445555544334 345677777655 2 11 255555566633322 3689999999999876
No 350
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=23.41 E-value=1.7e+02 Score=24.87 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+...
T Consensus 68 ~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 110 (152)
T 3bj6_A 68 RQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITA 110 (152)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHH
Confidence 3456788999999999986422 1 148999999887543
No 351
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=23.33 E-value=44 Score=33.80 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.1
Q ss_pred cCCCCCHHHHHHHHHcCCCCHHHHH
Q psy15878 610 DLPGVKIGRARQLLNAGYSSLELIA 634 (693)
Q Consensus 610 ~i~gi~~~~a~~L~~~g~~s~~~l~ 634 (693)
.+||||+++|.+|.+. .|++.+.
T Consensus 229 GvpGiG~ktA~kli~~--gsle~i~ 251 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS--GVAKDVL 251 (326)
T ss_dssp TTTTCCHHHHHHHHHH--TCHHHHH
T ss_pred CCCCcCHHHHHHHHHc--CCHHHHH
Confidence 6899999999999999 8999986
No 352
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.33 E-value=1.7e+02 Score=24.75 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+...
T Consensus 64 ~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 106 (147)
T 2hr3_A 64 SSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYG 106 (147)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHH
T ss_pred hhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHH
Confidence 3456788999999999986422 1 238999999887543
No 353
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=23.24 E-value=2e+02 Score=24.37 Aligned_cols=37 Identities=5% Similarity=0.171 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--Cc---cEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--AG---HLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~~---~~~~T~lG~~~~~ 433 (693)
...+...++.|++.|+|....+ +. .+.+|+.|+.+..
T Consensus 70 ~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 111 (150)
T 2rdp_A 70 CSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIE 111 (150)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHH
T ss_pred chhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHH
Confidence 3456788999999999986321 21 3899999988764
No 354
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=22.86 E-value=1.6e+02 Score=24.90 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHhhcCCeEeecc-----CccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE-----AGHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~-----~~~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ ...+.+|+.|+.....
T Consensus 68 ~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~ 110 (148)
T 3nrv_A 68 KAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
T ss_dssp HHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHH
Confidence 3456788999999999985321 1248999999887643
No 355
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=22.81 E-value=2.2e+02 Score=22.91 Aligned_cols=37 Identities=11% Similarity=-0.014 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhhcCCeEeeccC--ccEEecHHHHHHHHc
Q psy15878 398 TLSEIVASLLASKGTMLTMNEA--GHLSLTSIAKAAVQA 434 (693)
Q Consensus 398 ~~~~~~l~~L~~~g~i~~~~~~--~~~~~T~lG~~~~~~ 434 (693)
..+-.+++.|++.|+|....+. ..+.+|+.|+.....
T Consensus 45 GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~ 83 (99)
T 2co5_A 45 GVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEE 83 (99)
T ss_dssp HHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHH
Confidence 3456789999999999865322 249999999877543
No 356
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=22.59 E-value=78 Score=31.35 Aligned_cols=74 Identities=11% Similarity=-0.059 Sum_probs=45.7
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
+.++||.+||+.-|..++..+...+.. . -...+...+++.....+.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~--------------------~-----------~~~~~~~~~~~~~~~~~~--- 207 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKF--------------------Y-----------PELKLAYAVRGNKLERGQ--- 207 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTT--------------------S-----------TTCCEEEESTTCCCCTTC---
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhh--------------------C-----------CCcEEEEEeCCccHhhhh---
Confidence 447999999999999888777652110 0 013366777765433221
Q ss_pred HHHhCCCCeEEEecchhh-------cccCCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTSTLA-------AGVNLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~~l~-------~Gvnlp~~~vVI~~ 290 (693)
....+|+|+|+--- ..+++..+.+||.+
T Consensus 208 ----~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlD 242 (300)
T 3fmo_B 208 ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (300)
T ss_dssp ----CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEET
T ss_pred ----cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEe
Confidence 34568999997321 24667777766654
No 357
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=22.56 E-value=3e+02 Score=24.32 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=26.7
Q ss_pred CCCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHhhh
Q psy15878 542 FDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEE 579 (693)
Q Consensus 542 e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~~~~~~~~~ 579 (693)
..+..+||+..||+++.+++-......+...+.+++..
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~~p~~~~~l~~vad~ 85 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADS 85 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHcCcchHHHHHHHHHH
Confidence 57999999999999999997655444443334444443
No 358
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=22.54 E-value=76 Score=34.07 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=47.6
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
+.++||.+|++.-+...+..+... . ......+..+||+.+...+....
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~--~------------------------------~~~~~~~~~~~g~~~~~~~~~~~ 99 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRY--F------------------------------ERLGYNIASISGATSDSVSVQHI 99 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHH--H------------------------------HTTTCCEEEECTTTGGGSCHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHH--h------------------------------ccCCcEEEEEcCCCcchhhHHHH
Confidence 789999999999888888777651 1 00013488899998766543222
Q ss_pred HHHhCCCCeEEEecchhh-----cc-c-CCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTSTLA-----AG-V-NLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~~l~-----~G-v-nlp~~~vVI~~ 290 (693)
. +..+|+|+|+-.- .+ + ++....+||.+
T Consensus 100 ~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViD 134 (555)
T 3tbk_A 100 I----EDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFD 134 (555)
T ss_dssp H----HHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEET
T ss_pred h----cCCCEEEECHHHHHHHHhcCcccccccCCEEEEE
Confidence 1 1368999996322 22 2 45555655553
No 359
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=22.36 E-value=2.4e+02 Score=25.33 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~ 433 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+..
T Consensus 71 ~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 71 KQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 3456788999999999985322 2 24899999988754
No 360
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=22.27 E-value=75 Score=28.90 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=12.8
Q ss_pred CcccEEEEecccccC
Q psy15878 64 DEIGLIVIDEFHMLN 78 (693)
Q Consensus 64 ~~i~lvVvDE~H~l~ 78 (693)
.+.++|++||+|.+.
T Consensus 75 ~~~dvviIDE~Q~~~ 89 (184)
T 2orw_A 75 EDTRGVFIDEVQFFN 89 (184)
T ss_dssp TTEEEEEECCGGGSC
T ss_pred CCCCEEEEECcccCC
Confidence 368899999999874
No 361
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=22.23 E-value=1.1e+02 Score=24.23 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHhhcCCeEeec--cCccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMN--EAGHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~--~~~~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|.... ....+.+|+.|+.+...
T Consensus 40 ~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~ 79 (99)
T 1tbx_A 40 TATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAIS 79 (99)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHH
Confidence 345678899999999998532 22358999999988643
No 362
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=22.21 E-value=2.9e+02 Score=22.47 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhhcCCeEeeccCcc---EEecHHHHHHHH
Q psy15878 398 TLSEIVASLLASKGTMLTMNEAGH---LSLTSIAKAAVQ 433 (693)
Q Consensus 398 ~~~~~~l~~L~~~g~i~~~~~~~~---~~~T~lG~~~~~ 433 (693)
..+...++.|++.|+|....++.. +.+|+-|+.+..
T Consensus 43 ~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~ 81 (123)
T 1okr_A 43 KTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYK 81 (123)
T ss_dssp HHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHH
T ss_pred hhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHH
Confidence 456788999999999986443321 578999988754
No 363
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.00 E-value=1.2e+02 Score=26.03 Aligned_cols=32 Identities=6% Similarity=0.044 Sum_probs=27.3
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHHHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFA 570 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a 570 (693)
.+.+.+..+||+.+|++++.+.+....|-..+
T Consensus 121 ~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 121 LIRGYSYREIATILSKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999998777665533
No 364
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=21.94 E-value=1.7e+02 Score=24.28 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=26.7
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHHHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFA 570 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a 570 (693)
.+.+.+..+||+.+|++++.+++....|-.-.
T Consensus 35 y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kL 66 (113)
T 1s7o_A 35 YADDYSLAEIADEFGVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp HHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 47899999999999999999998777665433
No 365
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=21.91 E-value=1.7e+02 Score=27.33 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~ 433 (693)
...+..+++.|++.|+|..... ..+.+|+.|+..+.
T Consensus 34 ~~tvs~~l~~Le~~GlV~r~~~-~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 34 PPAVTEMMKKLLAEELLIKDKK-AGYLLTDLGLKLVS 69 (214)
T ss_dssp HHHHHHHHHHHHHTTSEEEETT-TEEEECHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCEEEecC-CCeEECHHHHHHHH
Confidence 3456788999999999997543 46999999988753
No 366
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=21.84 E-value=92 Score=31.31 Aligned_cols=56 Identities=7% Similarity=-0.012 Sum_probs=32.6
Q ss_pred hHHHHhchhccCCCCcccEEEEecccc-cCCCCChHHHHHHHHHHhccCCCceEEEEcCcC
Q psy15878 50 GSKLIGSLIQENRIDEIGLIVIDEFHM-LNEPQRGPILECVVSKVLYLKKSIQIFAMSATI 109 (693)
Q Consensus 50 ~~~Ll~~l~~~~~l~~i~lvVvDE~H~-l~d~~rg~~le~il~~l~~~~~~~qii~lSATl 109 (693)
+..+.+.....+.+.+-.+|||||+|. +... ..+.++..+...+++..+|+.+.++
T Consensus 61 ~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~----~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 61 WNAIFSLCQAMSLFASRQTLLLLLPENGPNAA----INEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECCSSCCCTT----HHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred HHHHHHHhcCcCCccCCeEEEEECCCCCCChH----HHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 334444444455667889999999998 7642 3344444444334455555555444
No 367
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=21.77 E-value=1.7e+02 Score=24.30 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--Cc---cEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--AG---HLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~~---~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ +. .+.+|+.|+.....
T Consensus 66 ~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 108 (140)
T 2nnn_A 66 AATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEA 108 (140)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHH
Confidence 3456788999999999986321 11 38999999887643
No 368
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=21.74 E-value=1.7e+02 Score=25.68 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--Cc---cEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--AG---HLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~~---~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ +. .+.+|+.|+.+...
T Consensus 73 ~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 115 (168)
T 2nyx_A 73 PSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQ 115 (168)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 3456788999999999986322 21 38999999887543
No 369
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=21.71 E-value=1.9e+02 Score=24.32 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~ 433 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+....
T Consensus 57 ~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 98 (144)
T 1lj9_A 57 RTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 98 (144)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHH
Confidence 3456788999999999986322 1 13899999988764
No 370
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=21.60 E-value=46 Score=27.99 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=27.1
Q ss_pred hhhhhcCCCCCHHHHHHHHHc-CCCCHHHHHhcChHHHHH
Q psy15878 605 LRALMDLPGVKIGRARQLLNA-GYSSLELIARADAKEMVA 643 (693)
Q Consensus 605 l~~l~~i~gi~~~~a~~L~~~-g~~s~~~l~~a~~~~l~~ 643 (693)
...|..|.|||+.+|..+.+. ||.--..+-..+++++..
T Consensus 15 ~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~ 54 (114)
T 3r8n_M 15 VIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDT 54 (114)
T ss_dssp HHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHH
T ss_pred HhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHH
Confidence 356889999999999997776 886544444444444444
No 371
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=21.48 E-value=1.3e+02 Score=25.86 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhhcCCeEe----eccCc---cEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLT----MNEAG---HLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~----~~~~~---~~~~T~lG~~~~~ 433 (693)
...+...++.|++.|+|.. +..+. .+.+|+.|+.+..
T Consensus 65 ~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~ 108 (151)
T 3kp7_A 65 KAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIK 108 (151)
T ss_dssp SSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHH
Confidence 3456788999999999995 22222 4899999988753
No 372
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=21.45 E-value=72 Score=26.14 Aligned_cols=30 Identities=7% Similarity=0.088 Sum_probs=27.4
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVTSY 568 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~ 568 (693)
++.+.+-.+|++++||+|..+.++++.|..
T Consensus 31 Yv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~ 60 (101)
T 2w7n_A 31 LVDGKPQATFATSLGLTRGAVSQAVHRVWA 60 (101)
T ss_dssp HTTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 688999999999999999999999987765
No 373
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=21.38 E-value=1.1e+02 Score=34.95 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=44.4
Q ss_pred CCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHHHH
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ve 258 (693)
++++||.||++.-+......+.. .. . .....+..+||+.+...+....
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~--~~-----------------~-------------~~~~~v~~~~g~~~~~~~~~~~ 343 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKH--HF-----------------E-------------RQGYSVQGISGENFSNVSVEKV 343 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHH--HH-----------------G-------------GGTCCEEEECCC-----CHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH--hc-----------------c-------------cCCceEEEEeCCcchhhhHHHh
Confidence 78999999999888888777765 11 0 0023488999998766543222
Q ss_pred HHHhCCCCeEEEecchh-----hcc-c-CCCCcEEEEec
Q psy15878 259 EAYLAGTLQIICCTSTL-----AAG-V-NLPAQRVIIRD 290 (693)
Q Consensus 259 ~~f~~g~i~VLvaT~~l-----~~G-v-nlp~~~vVI~~ 290 (693)
. +..+|+|+|+-. ..+ + .+....+||.+
T Consensus 344 ~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViD 378 (797)
T 4a2q_A 344 I----EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 378 (797)
T ss_dssp H----HTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEET
T ss_pred h----CCCCEEEEchHHHHHHHHhccccccccCCEEEEE
Confidence 1 246899999532 222 2 45555665553
No 374
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=21.30 E-value=66 Score=25.32 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=19.9
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHH
Q psy15878 637 DAKEMVAKIRHLPLRSARNLISAAK 661 (693)
Q Consensus 637 ~~~~l~~~~~~~~~~~a~~i~~~a~ 661 (693)
.+...+..++|+|++..+.+++..+
T Consensus 15 ~~~s~L~~IpGIG~kr~~~LL~~Fg 39 (84)
T 1z00_B 15 GPQDFLLKMPGVNAKNCRSLMHHVK 39 (84)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHSS
T ss_pred cHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 3556666799999999999988763
No 375
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=21.21 E-value=1.9e+02 Score=24.71 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+...
T Consensus 72 ~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 114 (154)
T 2eth_A 72 KSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGE 114 (154)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHH
Confidence 3456788999999999986321 1 148999999887643
No 376
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=21.20 E-value=1.3e+02 Score=26.50 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~ 433 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+..
T Consensus 82 ~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 82 QPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence 3456788999999999986322 1 24899999988764
No 377
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=21.10 E-value=1.1e+02 Score=25.81 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhhcCCeEeeccCccEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~~~~~~~T~lG~~~~~ 433 (693)
...+...++.|++.|+|.... ..+.+|+.|+....
T Consensus 45 ~~tv~~~l~~Le~~Gli~r~~--~~~~Lt~~g~~~~~ 79 (139)
T 2x4h_A 45 PSSVFEEVSHLEEKGLVKKKE--DGVWITNNGTRSIN 79 (139)
T ss_dssp HHHHHHHHHHHHHTTSEEEET--TEEEECHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCEEecC--CeEEEChhHHHHHH
Confidence 345678899999999999764 46999999987653
No 378
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=21.00 E-value=1.8e+02 Score=24.78 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhhcCCeEe--ec--cCc---cEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLT--MN--EAG---HLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~--~~--~~~---~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|.. .. .+. .+.+|+.|+.+...
T Consensus 69 ~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~ 113 (154)
T 2qww_A 69 GSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKR 113 (154)
T ss_dssp HHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHH
Confidence 3456788999999999987 22 122 48999999887644
No 379
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=20.99 E-value=1.8e+02 Score=24.25 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHH
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQ 433 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~ 433 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+..
T Consensus 64 ~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~ 105 (141)
T 3bro_A 64 SSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLET 105 (141)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHH
T ss_pred cchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHH
Confidence 3456788999999999985322 1 14889999987653
No 380
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=20.80 E-value=68 Score=29.74 Aligned_cols=23 Identities=4% Similarity=0.034 Sum_probs=19.6
Q ss_pred CCceEEEeCChHHHHHHHHHhhh
Q psy15878 179 NLMVLIFCSSKIACSNLALRLQF 201 (693)
Q Consensus 179 ~~~vLVF~~sr~~~e~la~~L~~ 201 (693)
+.++||.+|++.-+..+++.+.+
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~ 94 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLK 94 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHH
Confidence 56899999999999888887765
No 381
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=20.80 E-value=90 Score=27.45 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhhCcEEEEeeccCCCCCcccc---c-cCCCcEEEEcccchHHHHhchhccCCCCcccEEEEec
Q psy15878 5 KYQSLAKAAEEFKFYLEEYAGVKGQYPPTKR---Q-LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDE 73 (693)
Q Consensus 5 ~~~~l~~~~~~~~~~v~~~~G~~~~~~~~~~---~-~~~~~IiV~Tpek~~~Ll~~l~~~~~l~~i~lvVvDE 73 (693)
..+.+.......|+.+..++|++........ . .+..+|+|||.-- . .--.+.++++||.-.
T Consensus 47 ~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~-----~---~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 47 HVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVA-----A---RGIDIENISLVINYD 111 (163)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGG-----T---TTCCCSCCSEEEESS
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChh-----h---cCCchhcCCEEEEeC
Confidence 4455666666678999999998753222111 1 2567899999321 1 112467788888643
No 382
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=20.74 E-value=1.8e+02 Score=24.83 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHHHHHHc
Q psy15878 397 TTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAKAAVQA 434 (693)
Q Consensus 397 ~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~~~~~~ 434 (693)
...+...++.|++.|+|....+ + ..+.+|+.|+.+...
T Consensus 65 ~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 107 (155)
T 1s3j_A 65 PSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEE 107 (155)
T ss_dssp HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHH
Confidence 3456788999999999986422 1 148999999887643
No 383
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=20.70 E-value=69 Score=28.31 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=11.8
Q ss_pred cccEEEEecccccC
Q psy15878 65 EIGLIVIDEFHMLN 78 (693)
Q Consensus 65 ~i~lvVvDE~H~l~ 78 (693)
.-.++|+||+|.+.
T Consensus 115 ~~~vl~iDe~~~l~ 128 (187)
T 2p65_A 115 GQVVMFIDEIHTVV 128 (187)
T ss_dssp TSEEEEETTGGGGS
T ss_pred CceEEEEeCHHHhc
Confidence 34699999999986
No 384
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=20.67 E-value=99 Score=30.49 Aligned_cols=76 Identities=11% Similarity=0.016 Sum_probs=49.1
Q ss_pred hcCCceEEEeCChHHHHHHHHHhhhccCCCCcccchhhHHHHHHHHHhccCCccchHHHHHHhhceEEEcCCCCHHHHHH
Q psy15878 177 QGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRL 256 (693)
Q Consensus 177 ~~~~~vLVF~~sr~~~e~la~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~gv~~~h~~l~~~eR~~ 256 (693)
..+.++||.+|++.-+...++.+.+.... ....+...||+.+..++..
T Consensus 54 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~ 101 (337)
T 2z0m_A 54 ELGMKSLVVTPTRELTRQVASHIRDIGRY--------------------------------MDTKVAEVYGGMPYKAQIN 101 (337)
T ss_dssp HHTCCEEEECSSHHHHHHHHHHHHHHTTT--------------------------------SCCCEEEECTTSCHHHHHH
T ss_pred hhcCCEEEEeCCHHHHHHHHHHHHHHhhh--------------------------------cCCcEEEEECCcchHHHHh
Confidence 36789999999999999988888751110 0123888999988765433
Q ss_pred HHHHHhCCCCeEEEecchh-----hc-ccCCCCcEEEEe
Q psy15878 257 IEEAYLAGTLQIICCTSTL-----AA-GVNLPAQRVIIR 289 (693)
Q Consensus 257 ve~~f~~g~i~VLvaT~~l-----~~-Gvnlp~~~vVI~ 289 (693)
. +. ..+|+|+|+-- .. .+++....+||.
T Consensus 102 ~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 102 R---VR--NADIVVATPGRLLDLWSKGVIDLSSFEIVII 135 (337)
T ss_dssp H---HT--TCSEEEECHHHHHHHHHTTSCCGGGCSEEEE
T ss_pred h---cC--CCCEEEECHHHHHHHHHcCCcchhhCcEEEE
Confidence 2 22 36899999632 22 245555555554
No 385
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.66 E-value=1.7e+02 Score=24.19 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=27.8
Q ss_pred HhcCCCHHHHHHHhCCCchhHHHHHHHHHHHHH
Q psy15878 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFAS 571 (693)
Q Consensus 539 ~i~e~~~~~i~~~y~v~~g~~~~l~~~~~~~a~ 571 (693)
.+.+.+..+||+.+|++++.+.+....|-.-+.
T Consensus 38 ~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 38 YLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 478999999999999999999987777665444
No 386
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=20.51 E-value=85 Score=28.52 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=25.1
Q ss_pred CcccEEEEecccccCCCCChHHHHHHHHHHhccCCCceEEEEcCc
Q psy15878 64 DEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSAT 108 (693)
Q Consensus 64 ~~i~lvVvDE~H~l~d~~rg~~le~il~~l~~~~~~~qii~lSAT 108 (693)
..-.+||+||+|.+.. ...+.+...+.....+..+|+.|..
T Consensus 101 ~~~~vliiDe~~~l~~----~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTA----DAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCH----HHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCH----HHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 5678999999998753 2344444444333455666666543
No 387
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=20.43 E-value=68 Score=28.04 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=19.0
Q ss_pred CCcccEEEEecccccCCCCChHHHHHHHHHH
Q psy15878 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKV 93 (693)
Q Consensus 63 l~~i~lvVvDE~H~l~d~~rg~~le~il~~l 93 (693)
+.+.+++|+||++.+.+.. ...+..++..+
T Consensus 81 ~~~~~lLilDE~~~~~~~~-~~~l~~li~~~ 110 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKLGNEE-QALLFSIFNRF 110 (149)
T ss_dssp GGGCSEEEEESTTCCCSHH-HHHHHHHHHHH
T ss_pred HhCCCEEEEeCccccChHH-HHHHHHHHHHH
Confidence 4567999999999865422 33344444443
No 388
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=20.09 E-value=1.4e+02 Score=25.17 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhhhhhccCchhhhhhhhhhHHHHHHHHHhhcCCeEeecc--C---ccEEecHHHH
Q psy15878 355 VDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNE--A---GHLSLTSIAK 429 (693)
Q Consensus 355 ~~~il~~i~~~~~~~~~~~~~~l~~t~~~~~~~p~~~~~~~~~~~~~~~l~~L~~~g~i~~~~~--~---~~~~~T~lG~ 429 (693)
.-.+|..+..+. .+..++.+.+. .....+...++.|++.|+|....+ + ..+.+|+.|+
T Consensus 40 ~~~iL~~l~~~~-~t~~eLa~~l~----------------~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~ 102 (146)
T 3tgn_A 40 QEHILMLLSEES-LTNSELARRLN----------------VSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLAR 102 (146)
T ss_dssp HHHHHHHHTTCC-CCHHHHHHHHT----------------CCHHHHHHHHHHHHHTTSEEC----------CCEECGGGH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHC----------------CCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHH
Confidence 344555565554 66766665543 123456788999999999985321 2 2488999998
Q ss_pred HHHHc
Q psy15878 430 AAVQA 434 (693)
Q Consensus 430 ~~~~~ 434 (693)
.....
T Consensus 103 ~~~~~ 107 (146)
T 3tgn_A 103 PIAEE 107 (146)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77644
Done!