Your job contains 1 sequence.
>psy15878
MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE
NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE
GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNL
MVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILY
GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISL
NMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILE
VVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAG
HLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGIL
LSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVL
NFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYC
RAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAA
KLHFITKMDKVEAMKNLIQNLQKNYDNIVHNTK
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15878
(693 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NYH9 - symbol:HELQ "Uncharacterized protein" ... 1049 5.1e-106 1
MGI|MGI:2176740 - symbol:Helq "helicase, POLQ-like" speci... 1025 1.8e-103 1
UNIPROTKB|Q8TDG4 - symbol:HELQ "Helicase POLQ-like" speci... 1023 2.9e-103 1
ZFIN|ZDB-GENE-060503-421 - symbol:helq "helicase, POLQ-li... 1020 6.0e-103 1
FB|FBgn0002899 - symbol:mus301 "mutagen-sensitive 301" sp... 698 6.3e-103 2
UNIPROTKB|E2RST3 - symbol:HELQ "Uncharacterized protein" ... 1007 1.4e-101 1
UNIPROTKB|J9P160 - symbol:HELQ "Uncharacterized protein" ... 1007 1.4e-101 1
UNIPROTKB|F1RVE2 - symbol:HELQ "Uncharacterized protein" ... 1006 1.8e-101 1
WB|WBGene00021905 - symbol:helq-1 species:6239 "Caenorhab... 835 2.4e-83 1
UNIPROTKB|E3W980 - symbol:HELQ "Helicase POLQ-like" speci... 824 3.6e-82 1
UNIPROTKB|E9PT19 - symbol:Helq "Protein Helq" species:101... 784 6.2e-78 1
UNIPROTKB|E9PSY5 - symbol:Helq "Protein Helq" species:101... 688 1.8e-72 2
DICTYBASE|DDB_G0279107 - symbol:DDB_G0279107 "Helicase PO... 585 1.2e-66 2
TAIR|locus:2125677 - symbol:AT4G32700 species:3702 "Arabi... 491 2.1e-61 3
ZFIN|ZDB-GENE-040724-232 - symbol:si:rp71-1p14.5 "si:rp71... 499 8.9e-45 1
UNIPROTKB|D4A628 - symbol:Polq "Polymerase (DNA directed)... 487 3.3e-43 1
FB|FBgn0002905 - symbol:mus308 "mutagen-sensitive 308" sp... 478 3.1e-42 1
WB|WBGene00020964 - symbol:polq-1 species:6239 "Caenorhab... 447 4.4e-38 2
UNIPROTKB|F1NMU1 - symbol:POLQ "Uncharacterized protein" ... 405 1.4e-34 1
UNIPROTKB|F1PXD9 - symbol:POLQ "Uncharacterized protein" ... 407 3.0e-34 1
RGD|1309795 - symbol:Polq "polymerase (DNA directed), the... 397 5.8e-33 1
UNIPROTKB|O75417 - symbol:POLQ "DNA polymerase theta" spe... 384 1.6e-31 1
UNIPROTKB|E1BMC0 - symbol:POLQ "Uncharacterized protein" ... 315 1.4e-27 2
POMBASE|SPAC9.03c - symbol:brr2 "U5 snRNP complex subunit... 316 3.3e-24 1
FB|FBgn0263599 - symbol:l(3)72Ab "lethal (3) 72Ab" specie... 314 1.9e-22 2
TAIR|locus:2089144 - symbol:RCK "ROCK-N-ROLLERS" species:... 282 2.6e-22 2
ASPGD|ASPL0000051297 - symbol:AN10194 species:162425 "Eme... 297 3.9e-22 1
DICTYBASE|DDB_G0290389 - symbol:ascc3 "activating signal ... 291 1.7e-21 1
UNIPROTKB|E2QVY0 - symbol:ASCC3 "Uncharacterized protein"... 290 1.9e-21 1
UNIPROTKB|E1BNG3 - symbol:ascc3 "Activating signal cointe... 290 2.2e-21 1
UNIPROTKB|F6Y2F0 - symbol:ASCC3 "Uncharacterized protein"... 290 2.2e-21 1
UNIPROTKB|F1SU44 - symbol:F1SU44 "Uncharacterized protein... 285 2.7e-21 1
SGD|S000000974 - symbol:BRR2 "RNA-dependent ATPase RNA he... 302 3.0e-21 2
CGD|CAL0001532 - symbol:orf19.3098 species:5476 "Candida ... 288 3.2e-21 1
UNIPROTKB|Q8N3C0 - symbol:ASCC3 "Activating signal cointe... 286 6.0e-21 1
CGD|CAL0003134 - symbol:orf19.3980 species:5476 "Candida ... 283 1.1e-20 1
DICTYBASE|DDB_G0270042 - symbol:ascc3l "U5 small nuclear ... 299 1.1e-20 2
ZFIN|ZDB-GENE-081105-64 - symbol:si:ch211-251j10.5 "si:ch... 297 1.3e-20 2
UNIPROTKB|F1NTD6 - symbol:ascc3 "Activating signal cointe... 282 1.6e-20 1
UNIPROTKB|E1BH78 - symbol:LOC100850262 "Uncharacterized p... 293 3.6e-20 2
TAIR|locus:2037375 - symbol:emb1507 "embryo defective 150... 294 3.7e-20 2
POMBASE|SPBC13G1.10c - symbol:mug81 "ATP-dependent RNA he... 284 5.0e-20 2
WB|WBGene00012896 - symbol:snrp-200 species:6239 "Caenorh... 286 1.3e-19 2
UNIPROTKB|Q9U2G0 - symbol:Y46G5A.4 "Putative U5 small nuc... 286 1.3e-19 2
UNIPROTKB|E3W982 - symbol:HELQ "Helicase POLQ-like" speci... 263 1.3e-19 1
UNIPROTKB|F1MFR1 - symbol:HFM1 "Uncharacterized protein" ... 265 1.5e-19 2
MGI|MGI:1925237 - symbol:Ascc3 "activating signal cointeg... 287 2.8e-19 2
ZFIN|ZDB-GENE-061207-43 - symbol:hfm1 "HFM1, ATP-dependen... 275 3.1e-19 2
RGD|1307995 - symbol:Ascc3 "activating signal cointegrato... 270 3.2e-19 1
UNIPROTKB|F1LNJ2 - symbol:Ascc3l1 "Protein Ascc3l1" speci... 294 3.7e-19 3
UNIPROTKB|O75643 - symbol:SNRNP200 "U5 small nuclear ribo... 293 4.7e-19 3
RGD|1584010 - symbol:Hfm1 "HFM1, ATP-dependent DNA helica... 262 5.5e-19 2
WB|WBGene00013189 - symbol:Y54E2A.4 species:6239 "Caenorh... 275 1.1e-18 2
UNIPROTKB|E2RA34 - symbol:HFM1 "Uncharacterized protein" ... 260 2.3e-18 2
FB|FBgn0038344 - symbol:CG5205 species:7227 "Drosophila m... 262 2.3e-18 1
UNIPROTKB|E2R5U9 - symbol:HFM1 "Uncharacterized protein" ... 260 2.4e-18 2
UNIPROTKB|G4N5J1 - symbol:MGG_06124 "Activating signal co... 261 2.7e-18 1
TAIR|locus:2059969 - symbol:AT2G42270 species:3702 "Arabi... 277 3.3e-18 2
GENEDB_PFALCIPARUM|PFD1060w - symbol:PFD1060w "u5 small n... 236 4.5e-18 3
UNIPROTKB|Q8IFP1 - symbol:PFD1060w "U5 small nuclear ribo... 236 4.5e-18 3
SGD|S000003503 - symbol:SLH1 "Putative RNA helicase relat... 258 5.6e-18 1
UNIPROTKB|F1S4E9 - symbol:HFM1 "Uncharacterized protein" ... 256 6.2e-18 2
UNIPROTKB|G4N3Z7 - symbol:MGG_05900 "Uncharacterized prot... 268 1.3e-17 2
UNIPROTKB|A6NGI5 - symbol:HFM1 "Probable ATP-dependent DN... 243 8.1e-17 2
UNIPROTKB|A2PYH4 - symbol:HFM1 "Probable ATP-dependent DN... 243 1.6e-16 2
UNIPROTKB|D4A2B2 - symbol:Polq "Protein Polq" species:101... 207 3.9e-16 2
SGD|S000003220 - symbol:HFM1 "Meiosis specific DNA helica... 238 4.3e-16 1
ASPGD|ASPL0000044033 - symbol:AN2482 species:162425 "Emer... 206 1.8e-15 2
TAIR|locus:2020573 - symbol:EMB25 "EMBRYO DEFECTIVE 25" s... 183 1.2e-14 2
UNIPROTKB|Q10701 - symbol:helY "Probable helicase HelY" s... 159 3.3e-14 2
GENEDB_PFALCIPARUM|PF14_0370 - symbol:PF14_0370 "RNA heli... 219 3.8e-14 2
UNIPROTKB|Q8IL78 - symbol:PF14_0370 "DEAD/DEAH box helica... 219 3.8e-14 2
UNIPROTKB|H9L351 - symbol:H9L351 "Uncharacterized protein... 190 7.1e-14 1
GENEDB_PFALCIPARUM|PF14_0234 - symbol:PF14_0234 "DNA-dire... 209 2.5e-13 2
UNIPROTKB|Q8ILK9 - symbol:PF14_0234 "DNA-directed DNA pol... 209 2.5e-13 2
POMBASE|SPAC17H9.02 - symbol:SPAC17H9.02 "TRAMP complex A... 192 4.7e-13 2
UNIPROTKB|G3MYJ7 - symbol:SKIV2L2 "Uncharacterized protei... 180 2.0e-12 2
UNIPROTKB|F1MJX4 - symbol:SKIV2L2 "Uncharacterized protei... 180 7.2e-12 2
MGI|MGI:1919448 - symbol:Skiv2l2 "superkiller viralicidic... 179 1.2e-11 2
UNIPROTKB|F5H7E2 - symbol:SKIV2L2 "Superkiller viralicidi... 175 2.5e-11 2
TAIR|locus:2063648 - symbol:HEN2 "hua enhancer 2" species... 164 3.2e-11 2
UNIPROTKB|E2RCI5 - symbol:SKIV2L2 "Uncharacterized protei... 175 3.3e-11 2
UNIPROTKB|P42285 - symbol:SKIV2L2 "Superkiller viralicidi... 175 3.3e-11 2
UNIPROTKB|F1SLL6 - symbol:SKIV2L2 "Uncharacterized protei... 175 3.3e-11 2
POMBASE|SPCC550.03c - symbol:SPCC550.03c "Ski complex RNA... 160 3.4e-11 2
UNIPROTKB|I3LAA7 - symbol:I3LAA7 "Uncharacterized protein... 178 3.6e-11 1
FB|FBgn0039117 - symbol:tst "twister" species:7227 "Droso... 164 4.0e-11 2
UNIPROTKB|F1MAH7 - symbol:F1MAH7 "Uncharacterized protein... 174 4.2e-11 2
TAIR|locus:2075566 - symbol:AT3G46960 species:3702 "Arabi... 172 4.9e-11 2
UNIPROTKB|B4E0P5 - symbol:SNRNP200 "U5 small nuclear ribo... 184 1.1e-10 1
ZFIN|ZDB-GENE-010430-5 - symbol:skiv2l "superkiller viral... 162 1.5e-10 2
ZFIN|ZDB-GENE-040426-2854 - symbol:skiv2l2 "superkiller v... 171 1.8e-10 2
UNIPROTKB|F1SU36 - symbol:SNRNP200 "Uncharacterized prote... 188 2.0e-10 2
CGD|CAL0002171 - symbol:orf19.6425 species:5476 "Candida ... 163 3.8e-10 2
DICTYBASE|DDB_G0275633 - symbol:DDB_G0275633 "superkiller... 155 6.5e-10 2
WB|WBGene00012342 - symbol:mtr-4 species:6239 "Caenorhabd... 150 8.6e-10 2
ASPGD|ASPL0000070749 - symbol:mtr4 species:162425 "Emeric... 155 1.2e-09 2
UNIPROTKB|E1BMS0 - symbol:LOC100139548 "Uncharacterized p... 161 1.3e-09 2
UNIPROTKB|G4MUH1 - symbol:MGG_07250 "DEAD/DEAH box helica... 177 1.3e-09 3
UNIPROTKB|F5H7B0 - symbol:SKIV2L "Helicase SKI2W" species... 160 1.4e-09 2
WARNING: Descriptions of 38 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1NYH9 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:AADN02009041 IPI:IPI00596471
Ensembl:ENSGALT00000018274 Uniprot:F1NYH9
Length = 995
Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
Identities = 248/705 (35%), Positives = 392/705 (55%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK L+ E F +EEYAG KG++PP KR++ KKS+YI TIEKG L+ SLI+
Sbjct: 300 IVQEKVWGLSSFGIELGFLVEEYAGSKGRFPPIKRRI-KKSLYIATIEKGHALVNSLIET 358
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
+RID++GL+V+DE HM+ E RG +LE ++K+LY K+ + MSAT+ N+ L F++
Sbjct: 359 DRIDDLGLVVVDELHMIGEGSRGAVLEMTLAKILYASKNTHVVGMSATLNNVGDLQKFLQ 418
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKS---LTEIYADNLDYS--LTGSGPDAVLHL 175
Y +N RP + EY+ + +++ D K+ T N YS L + PD ++ L
Sbjct: 419 AEYYTKNFRPVELKEYIKIRDTIYE-VDSKAENGFTFSRLLNFKYSSSLEKADPDHIVAL 477
Query: 176 VQGNL---MVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLST 232
V + LIFC +K C N+A + + ++++EK+DLI+ LK+ +G +
Sbjct: 478 VTEVIPKYSCLIFCPTKKNCENVATMVCKYLNKEFRAHREKEKQDLIKNLKDIGNGSICP 537
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY 292
L + I +GVAYHH+ LT ER+ IEEAY G L ++ CT+TLAAGVNLPA+RVI+R Y
Sbjct: 538 VLRQTIPFGVAYHHSGLTNDERKSIEEAYSRGVLCLLACTATLAAGVNLPARRVILRAPY 597
Query: 293 VGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPP 352
V +F+ N YKQM+GRAGR G+ +GESI++ + L ++ + E S++ P
Sbjct: 598 VASEFLKKNQYKQMIGRAGRAGIDNAGESILVVQEKDKHL-VRDLITSPLENCYSNLLPE 656
Query: 353 T---LVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLAS 409
+ L+L +V + + E+V + + HTL + Q E +LSEIV L +
Sbjct: 657 ITKGMQYLLLSLVGLKIAVTQEEVYSFMCHTLL----GVQQQLLLKEKSLSEIVRDELEN 712
Query: 410 -------KGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLH 462
KG ++ N L++T + KA + + C ++Y +L L +SLH
Sbjct: 713 LIEKGLLKGKIMDQNSKSTLTVTLLGKATYKGSIDVSYCNLLYKELRKGLEGLVLESSLH 772
Query: 463 MLFLVIPLEY--RIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL- 519
+L+L P + D ++ R ++ + +VA+ +GV E+ +A +G+
Sbjct: 773 LLYLATPYDMVSNCSPDWMIYLR-----QFNQLSSAEQKVADMVGVPESFIAKKASGQAI 827
Query: 520 -KDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCE 578
K+ + R + + +LY +L N V++ + + ++QN L + FAS + FCE
Sbjct: 828 RKNVDSTAVNRLYLSFVLYALLKETNVWSVSEKFNMSRGYVQNLLTSAASFASCILHFCE 887
Query: 579 ELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADA 638
EL E W YK LLT+L + L YC L LM++ GV RA+QL NAGY +L +A A+
Sbjct: 888 ELEEFWVYKALLTELTKRLTYCVKTELIPLMEVAGVLEARAKQLYNAGYKTLAHLANANP 947
Query: 639 KEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNLQK 683
+ +V I HL R A+ ++S+AK+ +K EA++ ++ L K
Sbjct: 948 ETLVKTIEHLSRRQAKQMVSSAKMLL---SEKAEALQEEVEELLK 989
>MGI|MGI:2176740 [details] [associations]
symbol:Helq "helicase, POLQ-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017116 "single-stranded
DNA-dependent ATP-dependent DNA helicase activity" evidence=ISO]
[GO:0017117 "single-stranded DNA-dependent ATP-dependent DNA
helicase complex" evidence=ISO] InterPro:IPR001650
InterPro:IPR010995 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2176740 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
SUPFAM:SSF47794 GO:GO:0017116 CTD:113510 OMA:SRPLENC
OrthoDB:EOG4THVSJ EMBL:BC082601 EMBL:BC109169 EMBL:BC109170
EMBL:AK052427 EMBL:AF436846 IPI:IPI00226287 IPI:IPI00886160
IPI:IPI00890018 RefSeq:NP_001074576.1 UniGene:Mm.21469
ProteinModelPortal:Q2VPA6 SMR:Q2VPA6 STRING:Q2VPA6
PhosphoSite:Q2VPA6 PRIDE:Q2VPA6 Ensembl:ENSMUST00000044684
GeneID:191578 KEGG:mmu:191578 UCSC:uc008yhz.1 UCSC:uc012dzs.1
HOGENOM:HOG000110747 InParanoid:Q2VPA6 NextBio:371088 Bgee:Q2VPA6
Genevestigator:Q2VPA6 GO:GO:0017117 Uniprot:Q2VPA6
Length = 1069
Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
Identities = 252/707 (35%), Positives = 391/707 (55%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK SL+ E F++EEYAG KG++PP KR+ KKS+YI TIEK L+ +LI+
Sbjct: 352 IVQEKISSLSSFGIELGFFVEEYAGSKGRFPPIKRR-EKKSLYIATIEKAHSLVNALIET 410
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
+R+ +GL+V+DE HM+ E RG ILE ++KVLY K+ QI MSAT+ N+ L F++
Sbjct: 411 SRLSTLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLNNVEDLQAFLK 470
Query: 121 GITYVENSRPTKHSEYVTVDKRVF----QSFDGKSLTEIYADNLDYSLTGSGPDAVLHLV 176
Y RP + E++ V+ ++ Q+ DG + + + + +L PD ++ LV
Sbjct: 471 AEYYTSQFRPVELKEFLKVNDTIYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALV 530
Query: 177 QG---NLMVLIFCSSKIACSNLALRLQFDRFPGTKEY---KKQEKEDLIEALKEENDGKL 230
N L+FC SK C N+A L +F +K+Y +++EK ++I++L+ +GK+
Sbjct: 531 TEVIPNYSCLVFCPSKKNCENVAEMLC--KFL-SKDYLNHREKEKCEVIKSLRNIGNGKV 587
Query: 231 STNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRD 290
L+ + +G+AYHH+ LT+ ER+L+EEAY G L ++ CTSTLAAGVNLPA+RVI+R
Sbjct: 588 CPVLKRTVPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRA 647
Query: 291 SYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLC--KTMQDFLRFSSMMNAGP-EPISS 347
YV F+ N YKQMVGRAGR G+ +GESI+L K Q L S GP E S
Sbjct: 648 PYVANTFLKRNQYKQMVGRAGRAGIDTAGESILLLQEKDKQQVLELIS----GPLETCCS 703
Query: 348 HM-DPPT--LVDLILEVVAANLCSSLEDVKTLIKHTLF-YQLKSPEDQQTFLETTLSEIV 403
H+ + T + L L ++ + +SL D+ + T F Q K +++ E T+ +
Sbjct: 704 HLVEEFTKGIQALFLSLIGLKIAASLGDIYQFMSGTFFGVQQKILLKEKSLWEITVDAL- 762
Query: 404 ASLLASKGTMLTMNEAG-------HLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFC 456
L KG +L + G H +T + +A+ + + C +Y DL
Sbjct: 763 -EHLTEKG-LLQKDSCGDNEGLECHFRITKLGQASFKGAIDLAYCDTLYRDLKKGLEGLV 820
Query: 457 LLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVT 516
L + LH+++L P + S+ + K ++ + P VA LGV+E+ +
Sbjct: 821 LESLLHLIYLTTPYDLAAQSEPDWMVYFK---QFGQLSPTEQNVAALLGVSESFIGKKAA 877
Query: 517 GKLKDEK--KALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVY 574
G+ +K K ++ R + + +LY +L N V++ + + ++QN L + F+S V
Sbjct: 878 GQAVRKKVDKNVVNRLYLSFVLYSLLKETNVWSVSEKFNLPRGYIQNLLMGAASFSSCVL 937
Query: 575 RFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIA 634
FCEEL E W YK LL +L + L YC L LM++ GV GRA+QL NAGY S+ +A
Sbjct: 938 HFCEELEEFWVYKALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYNAGYRSIMHLA 997
Query: 635 RADAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNL 681
A+ + +V I HL R AR ++S+AK+ +K EA++ + L
Sbjct: 998 NANPEVLVKTIDHLSRRQARQIVSSAKMLL---HEKAEALQGEAEEL 1041
>UNIPROTKB|Q8TDG4 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AF436845 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GO:GO:0008026 EMBL:AK128665
EMBL:AC096768 EMBL:BC015428 EMBL:BC095473 EMBL:AL512702
IPI:IPI00152527 IPI:IPI00647582 IPI:IPI00807650 IPI:IPI00889496
RefSeq:NP_598375.2 UniGene:Hs.480101 ProteinModelPortal:Q8TDG4
SMR:Q8TDG4 IntAct:Q8TDG4 STRING:Q8TDG4 PhosphoSite:Q8TDG4
DMDM:296434521 PaxDb:Q8TDG4 PRIDE:Q8TDG4 DNASU:113510
Ensembl:ENST00000295488 GeneID:113510 KEGG:hsa:113510
UCSC:uc003hom.3 UCSC:uc003hoo.1 UCSC:uc003hop.1 CTD:113510
GeneCards:GC04M084328 HGNC:HGNC:18536 HPA:HPA036853 MIM:606769
neXtProt:NX_Q8TDG4 PharmGKB:PA164720529 InParanoid:Q8TDG4
OMA:SRPLENC OrthoDB:EOG4THVSJ PhylomeDB:Q8TDG4 GenomeRNAi:113510
NextBio:78853 ArrayExpress:Q8TDG4 Bgee:Q8TDG4 Genevestigator:Q8TDG4
Uniprot:Q8TDG4
Length = 1101
Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
Identities = 251/705 (35%), Positives = 392/705 (55%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK L+ E F++EEYAG KG++PPTKR+ KKS+YI TIEKG L+ SLI+
Sbjct: 393 IVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRR-EKKSLYIATIEKGHSLVNSLIET 451
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
RID +GL+V+DE HM+ E RG LE ++K+LY K+ QI MSAT+ N+ L F++
Sbjct: 452 GRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILYTSKTTQIIGMSATLNNVEDLQKFLQ 511
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKS---LTEIYADNLDYS--LTGSGPDAVLHL 175
Y RP + EY+ ++ +++ D K+ +T N YS L PD ++ L
Sbjct: 512 AEYYTSQFRPVELKEYLKINDTIYE-VDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVAL 570
Query: 176 VQG---NLMVLIFCSSKIACSNLALRLQFDRFPGTKEY-KKQEKE--DLIEALKEENDGK 229
V N L+FC SK C N+A + +F +KEY K +EKE ++I+ LK +G
Sbjct: 571 VTEVIPNYSCLVFCPSKKNCENVAEMIC--KFL-SKEYLKHKEKEKCEVIKNLKNIGNGN 627
Query: 230 LSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR 289
L L+ I +GVAYHH+ LT+ ER+L+EEAY G L + CTSTLAAGVNLPA+RVI+R
Sbjct: 628 LCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILR 687
Query: 290 DSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHM 349
YV ++F+ N YKQM+GRAGR G+ GESI++ + +D + ++ E SH+
Sbjct: 688 APYVAKEFLKRNQYKQMIGRAGRAGIDTIGESILILQE-KDKQQVLELITKPLENCYSHL 746
Query: 350 DPPT---LVDLILEVVAANLCSSLEDVKTLIKHTLF-YQLKSPEDQQTFLETTLSEI--- 402
+ L L ++ + ++L+D+ + T F Q K +++ E T+ +
Sbjct: 747 VQEFTKGIQTLFLSLIGLKIATNLDDIYHFMNGTFFGVQQKVLLKEKSLWEITVESLRYL 806
Query: 403 VASLLASKGTMLTMNEAGHLS--LTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNS 460
L K T+ E + +T + +A+ + + C I+Y DL L +
Sbjct: 807 TEKGLLQKDTIYKSEEEVQYNFHITKLGRASFKGTIDLAYCDILYRDLKKGLEGLVLESL 866
Query: 461 LHMLFLVIPLEY--RIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGK 518
LH+++L P + + D ++ R ++++ P VA LGV+E+ + +G+
Sbjct: 867 LHLIYLTTPYDLVSQCNPDWMIYFR-----QFSQLSPAEQNVAAILGVSESFIGKKASGQ 921
Query: 519 LKDEK--KALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRF 576
+K K ++ R + + +LY +L N V++ + + ++QN L T+ F+S V F
Sbjct: 922 AIGKKVDKNVVNRLYLSFVLYTLLKETNIWTVSEKFNMPRGYIQNLLTGTASFSSCVLHF 981
Query: 577 CEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARA 636
CEEL E W Y+ LL +L + L YC L LM++ GV GRA+QL +AGY SL +A A
Sbjct: 982 CEELEEFWVYRALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYSAGYKSLMHLANA 1041
Query: 637 DAKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNL 681
+ + +V I HL R A+ ++S+AK+ +K EA++ ++ L
Sbjct: 1042 NPEVLVRTIDHLSRRQAKQIVSSAKMLL---HEKAEALQEEVEEL 1083
>ZFIN|ZDB-GENE-060503-421 [details] [associations]
symbol:helq "helicase, POLQ-like" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR010995 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060503-421 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
EMBL:BX649525 CTD:113510 IPI:IPI00799443 RefSeq:XP_691411.3
UniGene:Dr.86132 Ensembl:ENSDART00000109412 GeneID:562952
KEGG:dre:562952 NextBio:20884669 Uniprot:F1Q4P2
Length = 1010
Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
Identities = 253/702 (36%), Positives = 390/702 (55%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK + L+ E F +EEYAG KG++PP KR+ NK S+YI TIEKG L+ SLI+
Sbjct: 314 LVQEKVRGLSSFGIELDFLVEEYAGSKGKFPPVKRR-NKNSLYITTIEKGHSLVNSLIEN 372
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
+R+D IGL+V+DE HML + RG ILE +SK+LY+ KS Q+ MSAT+GN+ L +F+
Sbjct: 373 DRLDNIGLVVVDELHMLGDGSRGAILEMTLSKILYMSKSTQVIGMSATLGNVKDLQSFLR 432
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKS---LTEIYADNLDYS--LTGSGPDAVLHL 175
Y N RP + EYV + +++ D K T N YS + PD ++ L
Sbjct: 433 AENYTNNFRPVELKEYVKIKDSIYE-VDPKEEACFTFSRLLNFKYSSGMQKMDPDHIIAL 491
Query: 176 ---VQGNLMVLIFCSSKIACSNLA-LRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLS 231
V LIFC++K C NLA + ++ K +K+ EK L+ LK +G L
Sbjct: 492 ATEVIPQQSCLIFCATKKNCENLAGMICKYLNKEFIK-HKEAEKAILLGELKSSGNGSLC 550
Query: 232 TNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS 291
L++ I +G+AYHH+ LT+ ER+L+EEAY +G L ++ CTSTLAAG+NLPA+RVI+R
Sbjct: 551 PVLQKTIPFGLAYHHSGLTSDERKLVEEAYSSGVLCLLTCTSTLAAGINLPARRVILRSP 610
Query: 292 YVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISS---H 348
YV DF+ + YKQMVGRAGR G+ GESI++ + +D ++ A E S H
Sbjct: 611 YVAADFLKRSQYKQMVGRAGRAGIDAMGESILILQD-KDINTAKKLLCAPMEKCYSNLLH 669
Query: 349 MDPPTLVDLILEVVAANLCSSLEDVKTLIKHT-LFYQLKSPEDQQTFLETTLSEIVASLL 407
L+ LIL ++ + +++E VK L+K T L Q +++ + T+ I L
Sbjct: 670 DGGRGLLSLILSLIGLKITTTVEQVKDLMKGTFLGVQEAQVSPEKSLWDLTVESI--QTL 727
Query: 408 ASKGTMLTMNEAGH---LSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNS-LHM 463
K + ++ + L +T + +A + + C ++Y DL L LLNS LH+
Sbjct: 728 KQKNLIEVSSDENNQNILQITRLGRATYKGSVDLSYCDVLYRDLSKG-LEGLLLNSFLHL 786
Query: 464 LFLVIPLE--YRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL-- 519
++LV P + ++ D ++ R ++T ++A +GV E+ VA G+
Sbjct: 787 VYLVTPYDMVHQCKPDWMIYFR-----QFTNLSAAEQKMATTVGVPESFVARKAAGQSVR 841
Query: 520 KDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEE 579
K ++ R + A +L+ +L N V++ + + +Q L+ S F S V F EE
Sbjct: 842 KSVDVVVVNRLYLALVLFSLLKETNLWIVSERFQLTRGFVQTLLSSASAFGSSVLHFTEE 901
Query: 580 LPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAK 639
L E W YK LL++L + L YC L LM++ GV RA+QL +AGY +L +A AD +
Sbjct: 902 LEEFWAYKALLSELTRRLTYCVQAELIPLMEVSGVLEHRAKQLYSAGYKTLSHLANADPQ 961
Query: 640 EMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNL 681
+V I +L + A +I++AK+ +T +K EA++ + +L
Sbjct: 962 TLVQTIENLFKKQAYQIIASAKM-LLT--EKAEALQEEVDDL 1000
>FB|FBgn0002899 [details] [associations]
symbol:mus301 "mutagen-sensitive 301" species:7227
"Drosophila melanogaster" [GO:0007294 "germarium-derived oocyte
fate determination" evidence=IGI;IMP] [GO:0008298 "intracellular
mRNA localization" evidence=IMP;TAS] [GO:0048477 "oogenesis"
evidence=IGI;TAS] [GO:0009949 "polarity specification of
anterior/posterior axis" evidence=IMP] [GO:0030717 "karyosome
formation" evidence=IMP] [GO:0009951 "polarity specification of
dorsal/ventral axis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0009994 "oocyte differentiation" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016321 "female meiosis chromosome segregation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009949 GO:GO:0007294 EMBL:AE014296 GO:GO:0006417
GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 GO:GO:0008298
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0030717 GO:GO:0016321
GO:GO:0008026 OMA:SRPLENC GO:GO:0009951 EMBL:BT011090
RefSeq:NP_648178.1 UniGene:Dm.15493 SMR:Q9VSE2 IntAct:Q9VSE2
STRING:Q9VSE2 EnsemblMetazoa:FBtr0076689 GeneID:38905
KEGG:dme:Dmel_CG7972 UCSC:CG7972-RA CTD:38905 FlyBase:FBgn0002899
InParanoid:Q9VSE2 OrthoDB:EOG4MKKXB GenomeRNAi:38905 NextBio:810944
Uniprot:Q9VSE2
Length = 1051
Score = 698 (250.8 bits), Expect = 6.3e-103, Sum P(2) = 6.3e-103
Identities = 173/436 (39%), Positives = 257/436 (58%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK +++ A + F +EEY KG+ PP R+ ++S++I +IEKG+ L+ SLI
Sbjct: 321 IVQEKVSAMSPFAIDLDFIVEEYTAGKGKCPPQPRR-KRRSLFIASIEKGAVLMDSLIDV 379
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
R EIGL+V+DE H++ E RG LE ++KV++L +IQI MSATIGN++ +S+F+
Sbjct: 380 QRPHEIGLVVVDELHLIGEKGRGATLEAFLTKVMFLNANIQIVGMSATIGNLSEISSFLN 439
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQ-SFDGKSLTEIYADN--LDYSLTGS----GPDAVL 173
Y RP + EY+ + + + G++L EI+ + ++Y+ + + PD +
Sbjct: 440 ADVYTRGFRPVELKEYIKCGPDLLEINSAGQTLEEIFVPSRSVEYNYSEAVKRADPDHLA 499
Query: 174 HLVQG---NLMVLIFCSSKIACSNLALRLQFDRFPGTK--EYKKQEKEDLIEALKEENDG 228
L+ L+FC S+ C N+AL L P K E+++ EK DL++AL ++ G
Sbjct: 500 GLISECAPEHCCLVFCPSRKNCENVALLLS-RIVPKHKFFEHRRSEKLDLMDAL-DKMCG 557
Query: 229 KLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVII 288
LS L + + YG+AYHH+ LT ER+ IE AY G + +ICCTSTLAAGVNLPA+RVII
Sbjct: 558 ILSPVLAKTLPYGIAYHHSGLTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVII 617
Query: 289 RDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSH 348
R YVG++F++L YKQMVGRAGR GL E+GESI++ ++ +D L M+ + + S
Sbjct: 618 RAPYVGQEFLTLCKYKQMVGRAGRAGLGEAGESILIAQS-KDNLLVGQMLFSPMDKALSS 676
Query: 349 MDPPTLV---DLILEVVAANLCSSLEDVKTLIKHTLF-YQLKSPEDQQTFLETTLSEIVA 404
+D V LIL VV NL D+ L+ TL Q KS LE ++EIV
Sbjct: 677 LDQNEAVGLQSLILSVVGLNLAECRRDLNRLVNSTLLSVQAKS-------LEVAVNEIVL 729
Query: 405 SLLAS--KGTMLTMNE 418
+L K +L + E
Sbjct: 730 RILREMFKNKVLQLAE 745
Score = 351 (128.6 bits), Expect = 6.3e-103, Sum P(2) = 6.3e-103
Identities = 99/340 (29%), Positives = 165/340 (48%)
Query: 358 ILEVVAANLCSSLEDVKTLIKHTLF----YQLKSPEDQQTFLETTL--SEIVASLLASKG 411
+L V A +L ++ ++ I +F QL P+ + + + S+ V+ G
Sbjct: 712 LLSVQAKSLEVAVNEIVLRILREMFKNKVLQLAEPQAKSKINSSDIITSQDVSQANRPAG 771
Query: 412 TM-LTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPL 470
L + ++ LT+I +AA +AG+ + I+ +L + L N LH+L+LV+
Sbjct: 772 DRRLLIGQSTPFKLTNIGRAAFKAGIDYKRANAIHKELKQAQQQLILTNYLHLLYLVVCF 831
Query: 471 EYRIPSDGILLSRSKV-YDRYTKFHPQTLRVAEALGVTENLVA-LNVTGKLKDEKKALLC 528
D + + + + + YT + + + LG TE A L T ++ L
Sbjct: 832 NSNERGDELFPADASILFGVYTSLPLDSQAMFKQLGFTEAHAARLFKTQSVQGPLSLQLN 891
Query: 529 RFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQ 588
R + IL D+LN VA Y ++ LQ+ ++ ++ AS + R CEEL E WCYK
Sbjct: 892 RLYKVLILADILNLLPIPSVASKYNVERGTLQHLISQSTAAASAIVRLCEELEEFWCYKP 951
Query: 589 LLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHL 648
L + + C L LM+LP VKI RARQL AG+ ++ IAR +V + H+
Sbjct: 952 LFERILHKMDRCGTFELEPLMELPAVKINRARQLYAAGFQTIGDIARVRPSHLVQSLEHM 1011
Query: 649 PLRSARNLISAAKLHFITKMDKVEA----MKNLIQNLQKN 684
PLR A ++SAAK+ + K+D +E +K+ ++ KN
Sbjct: 1012 PLRVATEIVSAAKIILMKKLDHLEEETENLKDCLKTSDKN 1051
Score = 39 (18.8 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 211 KKQEKEDLIEALKEENDGKLSTNLEECILYGVAY 244
K + E L+ LK+++ +S ++ E ++ G Y
Sbjct: 170 KPKTPEKLLAPLKDDSMSFISKSVIEGLVQGTQY 203
>UNIPROTKB|E2RST3 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 OMA:SRPLENC EMBL:AAEX03016730
Ensembl:ENSCAFT00000014486 Uniprot:E2RST3
Length = 1106
Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
Identities = 248/704 (35%), Positives = 389/704 (55%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK L+ E F++EEYAG KG++PP KR+ KKS+YI TIEKG+ L+ SLI+
Sbjct: 399 IVQEKISGLSSFGIELGFFVEEYAGSKGKFPPIKRR-GKKSLYIATIEKGNSLVNSLIET 457
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
RI +GL+V+DE HM+ E RG ILE ++KVLY K+ QI MSAT+ N+ L F++
Sbjct: 458 GRISSLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLTNVEDLQKFLQ 517
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKS---LTEIYADNLDYS--LTGSGPDAVLHL 175
Y RP + EY+ ++ +++ D K+ +T N YS L PD ++ L
Sbjct: 518 AEYYTSQFRPVELKEYLKINDAIYE-VDSKAENGMTFSRLLNCQYSDTLKKMDPDHLVAL 576
Query: 176 ---VQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKK---QEKEDLIEALKEENDGK 229
V N L+FC +K C N+A + RF +K+Y K +EK ++I+ LK + G
Sbjct: 577 ATEVIPNHSCLVFCPTKKNCENVAEMIC--RFL-SKQYLKHREKEKHEVIKNLKNISSGN 633
Query: 230 LSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR 289
L L+ I +GVAYHH+ LT+ ER+L+EEAY G L + CTSTLAAGVNLPA+RVI+R
Sbjct: 634 LCPILKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILR 693
Query: 290 DSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHM 349
YV ++F+ N YKQM+GRAGR G+ GESI++ + +D + +++ E SH+
Sbjct: 694 APYVAKEFLKRNQYKQMIGRAGRAGIDSIGESILILQE-KDKQQVLELISRPLENCYSHL 752
Query: 350 DPPT---LVDLILEVVAANLCSSLEDVKTLIKHTLF-YQLKSPEDQQTFLETTLSEI--- 402
+ L L ++ + ++L+D+ + T F Q K +++ + T+ +
Sbjct: 753 VQEFTKGIQTLFLSLIGLKIATNLDDIYHFMCGTFFGVQQKILLQEKSLWDITIESLRYL 812
Query: 403 VASLLASKGTMLTMNEAGHLS--LTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNS 460
L K T+ E S +T + +A+ + + C I+Y DL L +
Sbjct: 813 TEKGLLQKDTIDKPKEEIQYSFHITKLGRASFKGTIDLAYCNILYRDLKKGLEGLVLESL 872
Query: 461 LHMLFLVIPLEYRIPSDGILLSRSKVYDR-YTKFHPQTLRVAEALGVTENLVALNVTGKL 519
LH+++L P + D + +Y R +++ P VA LGV+EN + +G+
Sbjct: 873 LHLIYLTTPYDMASCCDPDWM----IYFRQFSQLSPAEQNVAALLGVSENFIGKKASGQP 928
Query: 520 KDEK--KALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFC 577
+K K ++ R + + +LY +L N V++ + + ++Q+ L + F+S V FC
Sbjct: 929 IKKKVDKDIVNRLYLSFVLYTLLKETNIWSVSEKFNMPRGYIQSLLTGAASFSSCVLHFC 988
Query: 578 EELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARAD 637
EEL E W Y+ LL +L + L YC L LM++ GV GRA+QL NAGY SL +A A+
Sbjct: 989 EELEEFWVYRALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYNAGYKSLTHLANAN 1048
Query: 638 AKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNL 681
+ ++ I HL A+ ++S+AK+ +K EA++ ++ L
Sbjct: 1049 PEVLIRTIDHLSRHQAKQMVSSAKMLL---HEKAEALQEEVEEL 1089
>UNIPROTKB|J9P160 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 CTD:113510 EMBL:AAEX03016730 RefSeq:XP_544959.2
Ensembl:ENSCAFT00000044378 GeneID:487837 KEGG:cfa:487837
Uniprot:J9P160
Length = 1072
Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
Identities = 248/704 (35%), Positives = 389/704 (55%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK L+ E F++EEYAG KG++PP KR+ KKS+YI TIEKG+ L+ SLI+
Sbjct: 365 IVQEKISGLSSFGIELGFFVEEYAGSKGKFPPIKRR-GKKSLYIATIEKGNSLVNSLIET 423
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
RI +GL+V+DE HM+ E RG ILE ++KVLY K+ QI MSAT+ N+ L F++
Sbjct: 424 GRISSLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLTNVEDLQKFLQ 483
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKS---LTEIYADNLDYS--LTGSGPDAVLHL 175
Y RP + EY+ ++ +++ D K+ +T N YS L PD ++ L
Sbjct: 484 AEYYTSQFRPVELKEYLKINDAIYE-VDSKAENGMTFSRLLNCQYSDTLKKMDPDHLVAL 542
Query: 176 ---VQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKK---QEKEDLIEALKEENDGK 229
V N L+FC +K C N+A + RF +K+Y K +EK ++I+ LK + G
Sbjct: 543 ATEVIPNHSCLVFCPTKKNCENVAEMIC--RFL-SKQYLKHREKEKHEVIKNLKNISSGN 599
Query: 230 LSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR 289
L L+ I +GVAYHH+ LT+ ER+L+EEAY G L + CTSTLAAGVNLPA+RVI+R
Sbjct: 600 LCPILKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILR 659
Query: 290 DSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHM 349
YV ++F+ N YKQM+GRAGR G+ GESI++ + +D + +++ E SH+
Sbjct: 660 APYVAKEFLKRNQYKQMIGRAGRAGIDSIGESILILQE-KDKQQVLELISRPLENCYSHL 718
Query: 350 DPPT---LVDLILEVVAANLCSSLEDVKTLIKHTLF-YQLKSPEDQQTFLETTLSEI--- 402
+ L L ++ + ++L+D+ + T F Q K +++ + T+ +
Sbjct: 719 VQEFTKGIQTLFLSLIGLKIATNLDDIYHFMCGTFFGVQQKILLQEKSLWDITIESLRYL 778
Query: 403 VASLLASKGTMLTMNEAGHLS--LTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNS 460
L K T+ E S +T + +A+ + + C I+Y DL L +
Sbjct: 779 TEKGLLQKDTIDKPKEEIQYSFHITKLGRASFKGTIDLAYCNILYRDLKKGLEGLVLESL 838
Query: 461 LHMLFLVIPLEYRIPSDGILLSRSKVYDR-YTKFHPQTLRVAEALGVTENLVALNVTGKL 519
LH+++L P + D + +Y R +++ P VA LGV+EN + +G+
Sbjct: 839 LHLIYLTTPYDMASCCDPDWM----IYFRQFSQLSPAEQNVAALLGVSENFIGKKASGQP 894
Query: 520 KDEK--KALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFC 577
+K K ++ R + + +LY +L N V++ + + ++Q+ L + F+S V FC
Sbjct: 895 IKKKVDKDIVNRLYLSFVLYTLLKETNIWSVSEKFNMPRGYIQSLLTGAASFSSCVLHFC 954
Query: 578 EELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARAD 637
EEL E W Y+ LL +L + L YC L LM++ GV GRA+QL NAGY SL +A A+
Sbjct: 955 EELEEFWVYRALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYNAGYKSLTHLANAN 1014
Query: 638 AKEMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNL 681
+ ++ I HL A+ ++S+AK+ +K EA++ ++ L
Sbjct: 1015 PEVLIRTIDHLSRHQAKQMVSSAKMLL---HEKAEALQEEVEEL 1055
>UNIPROTKB|F1RVE2 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:CU467102 EMBL:CU468150 Ensembl:ENSSSCT00000010115
Uniprot:F1RVE2
Length = 1103
Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
Identities = 247/702 (35%), Positives = 383/702 (54%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK L+ E F++EEYAG KG++PP KR+ KKS+YI TIEKG L+ SLI+
Sbjct: 395 IVQEKIAGLSSFGIELGFFVEEYAGSKGKFPPIKRR-EKKSLYIATIEKGHSLVNSLIET 453
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
RI +GL+V+DE HM+ E RG LE ++K+LY K+ QI MSAT+ N+ L F+
Sbjct: 454 GRIGGLGLVVVDELHMIGEGSRGATLEMTLAKILYTSKTTQIVGMSATLNNVEDLQAFLR 513
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKS---LTEIYADNLDYS--LTGSGPDAVLHL 175
Y RP + EY+ ++ +++ D K+ +T N YS L PD ++ L
Sbjct: 514 AEYYSSWFRPVELKEYLKINDTIYE-VDSKAENGMTFSRLLNYKYSDTLKKLDPDHLVAL 572
Query: 176 VQG---NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLST 232
V N L+FC +K C N+A + +++++EK +L++ LK + G +
Sbjct: 573 VTEVIPNHSCLVFCPTKKNCENVAEMICKILSKEYLKHREKEKHELLKNLKAISGGSVCP 632
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSY 292
L+ I +GVAYHH+ LT ER+L+EEA+ AG L ++ CTSTLAAGVNLPAQRVI+R Y
Sbjct: 633 VLKHTIPFGVAYHHSGLTNDERKLLEEAHSAGVLCLLTCTSTLAAGVNLPAQRVILRAPY 692
Query: 293 VGRDFISLNMYKQMVGRAGRTGLQESGESIMLC--KTMQDFLRFSS--MMNAGPEPISSH 348
V ++F+ N YKQM+GRAGR G+ GESI++ K Q L S + N +
Sbjct: 693 VAKEFLKRNQYKQMIGRAGRAGIDSVGESILIFQEKDKQQVLELISRPLENCYSRLVQEF 752
Query: 349 MDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLF-YQLKSPEDQQTFLETTLSEI---VA 404
+ L L ++ + ++L D+ + T F Q K +++ E T+ +
Sbjct: 753 TKG--IQTLFLSLIGLKIATTLGDIYHFMSGTFFGVQQKILLKEKSLWEITVESLRYLTE 810
Query: 405 SLLASKGTMLTMNEAGHLS--LTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLH 462
L K T+L E S +T + +A+ + + C I+Y DL L + LH
Sbjct: 811 KGLLQKDTVLGSEEEFQYSFRITKLGRASFKGTIDLAYCDILYRDLKKGLEGLVLESLLH 870
Query: 463 MLFLVIPLEYRIPSDGILLSRSKVYDR-YTKFHPQTLRVAEALGVTENLVALNVTGKLKD 521
+++L P + D + VY R +++ P VA +GV+EN + +G+
Sbjct: 871 LIYLTTPYDMASRCDPDWM----VYFRQFSQLSPAEQNVATLVGVSENFIGKKASGQAIK 926
Query: 522 EK--KALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEE 579
+K K ++ R + + +LY +L + +V++ + + H+QN L+ + F+S V FCEE
Sbjct: 927 KKVDKTIVNRLYLSFVLYTLLKETSVWRVSEKFNMPRGHIQNLLSGAAAFSSCVLHFCEE 986
Query: 580 LPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAK 639
L E W Y+ LL +L + L YC L LM++ GV GRA+QL NAGY SL +A AD +
Sbjct: 987 LEEFWVYRALLVELTKKLTYCVKAELIPLMEVAGVLEGRAKQLYNAGYKSLAHLANADPE 1046
Query: 640 EMVAKIRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNL 681
++ I HL R A+ ++S+AK+ +K EA++ ++ L
Sbjct: 1047 VLIRTIDHLSRRQAKQIVSSAKMLL---HEKAEALQEEVEEL 1085
>WB|WBGene00021905 [details] [associations]
symbol:helq-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IGI] [GO:0051117 "ATPase
binding" evidence=IPI] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0000712 GO:GO:0017116
OMA:SRPLENC EMBL:FO080183 RefSeq:NP_001022911.1
ProteinModelPortal:H2KY86 SMR:H2KY86 EnsemblMetazoa:Y55B1AL.3a
GeneID:175210 KEGG:cel:CELE_Y55B1AL.3 CTD:175210
WormBase:Y55B1AL.3a Uniprot:H2KY86
Length = 923
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 209/696 (30%), Positives = 372/696 (53%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK +LA + F +EEYA KG++PP KR+ + S+Y+ TIEK + LI SLI +
Sbjct: 225 IVQEKISALAPFEDAFGINIEEYASNKGRFPPIKRR-KRVSVYVATIEKANMLINSLITQ 283
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
++D +G++V+DE HM+ + RG ILE +++K LY K + QI MSAT+ NI+ L +
Sbjct: 284 GQLDRVGMVVVDELHMIGDGGRGAILEQLLAKFLY-KGTGQIVGMSATLPNIDDLKFALR 342
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNL 180
Y N RP + +E+V + + + Q + L D +L + PD + L+ +
Sbjct: 343 AFVYSTNFRPVELTEFVKIGQTMHQVSENGDLNPA-GDLPTNNLKSTDPDGICQLLAKLI 401
Query: 181 ---MVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEA-LKEENDGKLSTNLEE 236
+IFC +K C N+A+ + ++ K+ E + +++ L + +D ++ L++
Sbjct: 402 PKNSAVIFCPNKKNCENVAVLIAKTLPAHIRQAKRAESDAFLQSYLSDNDDERMDAVLKQ 461
Query: 237 CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRD 296
CIL GVAYHH+ LT ER+ +E A++ G + ++C TSTLAAGVNLP +RVII+ VGR+
Sbjct: 462 CILSGVAYHHSGLTQDERKCVEAAFMEGLIYVVCATSTLAAGVNLPVRRVIIKAPMVGRE 521
Query: 297 FISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAG-PEPISSHMDPPTLV 355
+ Y QM GRAGR G G+ I + K ++ F M+ + P +SS ++
Sbjct: 522 RLGKAQYLQMAGRAGRAGFDTKGDCITIIKAGEEERWFREMLKSDIPRCMSSLSSEESMG 581
Query: 356 DLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEI------------- 402
IL+ V L ++E++ T ++++LFY +SPE+ + +E+++ +
Sbjct: 582 SFILDCVVLKLAENIEEIMTAVRYSLFYAQESPENIRKLVESSVKRLEEHYFITIEPLEQ 641
Query: 403 -VASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLL--N 459
VAS +++ + + G +S + + A AG D +++DL+ + LN ++ +
Sbjct: 642 DVASEPSAQASSIP-RVPGKISPSDLGNAVFNAGFDPDEATRLHADLV-SSLNQGVIFAS 699
Query: 460 SLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL 519
H+LF++ P E + L +Y+ + L AE G+ E + + ++
Sbjct: 700 HFHLLFIITPYEQVCNINWDLFLL--MYNALPSSERKLL--AEC-GLEEKFILEAIITRV 754
Query: 520 KDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEE 579
R + A +L + N + VA+ +G++ LQ L + A+ + +F E+
Sbjct: 755 DLTAGTPRMRLYIALMLQKIWNHEPMYTVAERFGVEKGWLQATLQSSISQAASIAKFSEK 814
Query: 580 LPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAK 639
+ +W ++LL +L Q L P L LM + G+K RA L AGY ++ +IARA+
Sbjct: 815 ITTMWPLRKLLPELVQRLSEAAQPELLPLMTVDGIKKARAAILFKAGYKTVGMIARANPL 874
Query: 640 EMVAKIRHLPLRSARNLISAAKLHFITKMD-KVEAM 674
++V ++ + + A ++I++A++ ++D K+E +
Sbjct: 875 KLVQELGTIRMAQANSIIASARMVLRDQVDEKMEEL 910
>UNIPROTKB|E3W980 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 GO:GO:0004386 EMBL:AC096768
HGNC:HGNC:18536 IPI:IPI00965172 ProteinModelPortal:E3W980
SMR:E3W980 Ensembl:ENST00000510985 UCSC:uc010ikb.3
ArrayExpress:E3W980 Bgee:E3W980 Uniprot:E3W980
Length = 1034
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 213/637 (33%), Positives = 343/637 (53%)
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENS 128
IV ++ HM+ E RG LE ++K+LY K+ QI MSAT+ N+ L F++ Y
Sbjct: 393 IVQEKLHMIGEGSRGATLEMTLAKILYTSKTTQIIGMSATLNNVEDLQKFLQAEYYTSQF 452
Query: 129 RPTKHSEYVTVDKRVFQSFDGKS---LTEIYADNLDYS--LTGSGPDAVLHLVQG---NL 180
RP + EY+ ++ +++ D K+ +T N YS L PD ++ LV N
Sbjct: 453 RPVELKEYLKINDTIYE-VDSKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNY 511
Query: 181 MVLIFCSSKIACSNLALRLQFDRFPGTKEY-KKQEKE--DLIEALKEENDGKLSTNLEEC 237
L+FC SK C N+A + +F +KEY K +EKE ++I+ LK +G L L+
Sbjct: 512 SCLVFCPSKKNCENVAEMIC--KFL-SKEYLKHKEKEKCEVIKNLKNIGNGNLCPVLKRT 568
Query: 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDF 297
I +GVAYHH+ LT+ ER+L+EEAY G L + CTSTLAAGVNLPA+RVI+R YV ++F
Sbjct: 569 IPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEF 628
Query: 298 ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPT---L 354
+ N YKQM+GRAGR G+ GESI++ + +D + ++ E SH+ +
Sbjct: 629 LKRNQYKQMIGRAGRAGIDTIGESILILQE-KDKQQVLELITKPLENCYSHLVQEFTKGI 687
Query: 355 VDLILEVVAANLCSSLEDVKTLIKHTLF-YQLKSPEDQQTFLETTLSEI---VASLLASK 410
L L ++ + ++L+D+ + T F Q K +++ E T+ + L K
Sbjct: 688 QTLFLSLIGLKIATNLDDIYHFMNGTFFGVQQKVLLKEKSLWEITVESLRYLTEKGLLQK 747
Query: 411 GTMLTMNEAGHLS--LTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVI 468
T+ E + +T + +A+ + + C I+Y DL L + LH+++L
Sbjct: 748 DTIYKSEEEVQYNFHITKLGRASFKGTIDLAYCDILYRDLKKGLEGLVLESLLHLIYLTT 807
Query: 469 PLEY--RIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEK--K 524
P + + D ++ R ++++ P VA LGV+E+ + +G+ +K K
Sbjct: 808 PYDLVSQCNPDWMIYFR-----QFSQLSPAEQNVAAILGVSESFIGKKASGQAIGKKVDK 862
Query: 525 ALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELW 584
++ R + + +LY +L N V++ + + ++QN L T+ F+S V FCEEL E W
Sbjct: 863 NVVNRLYLSFVLYTLLKETNIWTVSEKFNMPRGYIQNLLTGTASFSSCVLHFCEELEEFW 922
Query: 585 CYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAK 644
Y+ LL +L + L YC L LM++ GV GRA+QL +AGY SL +A A+ + +V
Sbjct: 923 VYRALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRT 982
Query: 645 IRHLPLRSARNLISAAKLHFITKMDKVEAMKNLIQNL 681
I HL R A+ ++S+AK+ +K EA++ ++ L
Sbjct: 983 IDHLSRRQAKQIVSSAKMLL---HEKAEALQEEVEEL 1016
>UNIPROTKB|E9PT19 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1560216
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 IPI:IPI00958253 Ensembl:ENSRNOT00000002974
ArrayExpress:E9PT19 Uniprot:E9PT19
Length = 879
Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
Identities = 190/536 (35%), Positives = 295/536 (55%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK SL+ E F++EEYAG KG++PP KR+ KKS+YI TIEKG L+ +LI+
Sbjct: 348 IVQEKISSLSSFGIELGFFVEEYAGSKGRFPPIKRR-EKKSLYIATIEKGHSLVNALIET 406
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
R+ +GL+V+DE HM+ E RG LE ++KVLY K+ QI MSAT+ N+ L F++
Sbjct: 407 GRMGTLGLVVVDELHMIGEGSRGATLEMTLAKVLYTSKTTQIIGMSATLNNVEDLQAFLK 466
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQ----SFDGKSLTEIYADNLDYS--LTGSGPDAVLH 174
Y RP + E++ V+ +++ + DG + + + N YS L PD ++
Sbjct: 467 AEYYTSQFRPVELKEFLKVNDTIYEVDSRAVDGMTFSRLL--NYKYSDALKKVDPDRLVA 524
Query: 175 LVQG---NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLS 231
LV N L+FC SK C N+A L ++++EK +LI++L+ GK+
Sbjct: 525 LVTEVIPNYSCLVFCPSKKNCENVAEMLCKFLSRDYLNHREEEKGELIKSLRNVGHGKVC 584
Query: 232 TNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS 291
L+ I +GVAYHH+ LT+ ER+L+EEAY G L + CTSTLAAGVNLPA+RVI+R
Sbjct: 585 PVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAP 644
Query: 292 YVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHM-D 350
YV F+ N YKQM+GRAGR G+ +GESI+L + +D + ++N E SH+ +
Sbjct: 645 YVANTFLKRNQYKQMIGRAGRAGIDTAGESILLLQE-KDKQQVLGLINGPLEDCHSHLVE 703
Query: 351 PPT--LVDLILEVVAANLCSSLEDVKTLIKHTLF-YQLKSPEDQQTFLETT---LSEIVA 404
T + L L ++ + SL D+ + TLF Q K+ +++ E T L +
Sbjct: 704 EFTKGIQSLFLSLIGLKIAESLGDIYQFMNGTLFGVQQKTLLREKSLWEVTVGALEHLTE 763
Query: 405 SLLASKGTMLTMNEAG-HLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHM 463
L K + + E+ H +T + +A+ + + C +Y DL L + LH+
Sbjct: 764 KGLLQKDSHGSPEESRCHFRITKLGQASFKGAIDLTYCDTLYRDLKKGLEGLVLESLLHL 823
Query: 464 LFLVIPLEYRIPSDGILLSRSKVYDR-YTKFHPQTLRVAEALGVTENLVALNVTGK 518
++L P + S+ + VY R +++ P VA LG++E+ + +G+
Sbjct: 824 VYLTTPYDLAAQSEPDWM----VYFRQFSQLSPAEQSVATLLGISESFIGRKASGQ 875
>UNIPROTKB|E9PSY5 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1560216 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI01007603 Ensembl:ENSRNOT00000031633 ArrayExpress:E9PSY5
Uniprot:E9PSY5
Length = 805
Score = 688 (247.2 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 150/358 (41%), Positives = 217/358 (60%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK SL+ E F++EEYAG KG++PP KR+ KKS+YI TIEKG L+ +LI+
Sbjct: 348 IVQEKISSLSSFGIELGFFVEEYAGSKGRFPPIKRR-EKKSLYIATIEKGHSLVNALIET 406
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIE 120
R+ +GL+V+DE HM+ E RG LE ++KVLY K+ QI MSAT+ N+ L F++
Sbjct: 407 GRMGTLGLVVVDELHMIGEGSRGATLEMTLAKVLYTSKTTQIIGMSATLNNVEDLQAFLK 466
Query: 121 GITYVENSRPTKHSEYVTVDKRVFQ----SFDGKSLTEIYADNLDYS--LTGSGPDAVLH 174
Y RP + E++ V+ +++ + DG + + + N YS L PD ++
Sbjct: 467 AEYYTSQFRPVELKEFLKVNDTIYEVDSRAVDGMTFSRLL--NYKYSDALKKVDPDRLVA 524
Query: 175 LVQG---NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLS 231
LV N L+FC SK C N+A L ++++EK +LI++L+ GK+
Sbjct: 525 LVTEVIPNYSCLVFCPSKKNCENVAEMLCKFLSRDYLNHREEEKGELIKSLRNVGHGKVC 584
Query: 232 TNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS 291
L+ I +GVAYHH+ LT+ ER+L+EEAY G L + CTSTLAAGVNLPA+RVI+R
Sbjct: 585 PVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAP 644
Query: 292 YVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHM 349
YV F+ N YKQM+GRAGR G+ +GESI+L + +D + ++N E SH+
Sbjct: 645 YVANTFLKRNQYKQMIGRAGRAGIDTAGESILLLQE-KDKQQVLGLINGPLEDCHSHL 701
Score = 63 (27.2 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 421 HLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSD 477
H +T + +A+ + + C +Y DL L + LH+++L P + S+
Sbjct: 739 HFRITKLGQASFKGAIDLTYCDTLYRDLKKGLEGLVLESLLHLVYLTTPYDLAAQSE 795
>DICTYBASE|DDB_G0279107 [details] [associations]
symbol:DDB_G0279107 "Helicase POLQ-like"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0279107 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000027 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 SUPFAM:SSF47794 GO:GO:0008026 RefSeq:XP_641869.1
ProteinModelPortal:Q54X98 EnsemblProtists:DDB0205039 GeneID:8621875
KEGG:ddi:DDB_G0279107 InParanoid:Q54X98 OMA:LTNDERE
ProtClustDB:CLSZ2430718 Uniprot:Q54X98
Length = 1238
Score = 585 (211.0 bits), Expect = 1.2e-66, Sum P(2) = 1.2e-66
Identities = 143/428 (33%), Positives = 242/428 (56%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK +S+ + + + +E Y G G P L K + ICTIEK + ++ LI++
Sbjct: 511 IVCEKTESMHEFSSALQIPVEGYHGCNGTIPV----LPGKRLLICTIEKANIIVNQLIED 566
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKS-IQIFAMSATIGNINALSTFI 119
R+ +IG +V+DE HM+ + +RG +LE ++SK+LY+ K IQI MSATI NI+ L +
Sbjct: 567 GRLLDIGCVVVDEIHMIGDGERGQLLEVLISKLLYMSKGQIQIIGMSATIPNIDNLQKWF 626
Query: 120 EGITYVENSRPTKHSEYVTVDKRVFQSFDG--KSLTEIYADNLDYSLTGSGPDAVLHLVQ 177
G Y RP +EY+ + +++ + KSL A N +++L L +V
Sbjct: 627 RGGVYQGTFRPVPLTEYIKIGDKLYDKENNLVKSLQGTEA-NENHTL-----QLCLEVVP 680
Query: 178 GNLMVLIFCSSKIACSNLALRLQFDRFP-GTKEYKKQEKEDLIEALKEENDGKLSTNLEE 236
+ VLIFC+SK+ +LAL+L FP + ++ E+E LI+ ++ N K+ + +
Sbjct: 681 KH-SVLIFCASKLLTVSLALQLA-KSFPQAILDNRRDEREILIQLIESSNGCKVEEDFKR 738
Query: 237 CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRD 296
I+ GVAYH+ADLT ER +IE + +L ++C TSTL+ GVNLPA+RVI+R +GR+
Sbjct: 739 MIMAGVAYHNADLTNDEREVIERGFKERSLLVLCATSTLSTGVNLPARRVILRSPRMGRN 798
Query: 297 FISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDP--PTL 354
+ + Y+QMVGRAGR G+ E GESI++C + ++ + +P+ S ++ +
Sbjct: 799 VLDIRSYRQMVGRAGRAGIDEFGESILMCDHFAPD-KAKKLLTSPMDPLLSSINKNVESF 857
Query: 355 VDLILEVVAANLCSSLEDVKTLIKHTLFYQ--LKSPEDQQTF--LETTLSEIVASLLASK 410
+IL+ + + + S + + +T FY L P+D + + +++ V +L+ S
Sbjct: 858 QKIILDSICSGIASDKFSILSFFSYT-FYSTHLLPPKDMTPYEYIRKLVNDSVEALIKSG 916
Query: 411 GTMLTMNE 418
++ N+
Sbjct: 917 HIQISCNQ 924
Score = 132 (51.5 bits), Expect = 1.2e-66, Sum P(2) = 1.2e-66
Identities = 57/224 (25%), Positives = 104/224 (46%)
Query: 425 TSIAKAAVQAGLSHDVCLIIYSDL--LHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLS 482
T + A ++GLS +Y +L + N + LHM +++ P+ + IP L
Sbjct: 954 TPLGYACFRSGLSIKNAKFLYDELRIIQNGA-VVISEQLHMCYIISPV-HNIPEIPDLDQ 1011
Query: 483 RSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL----KDEKKALLCRFFHACILYD 538
K + P+ L VA+ L +++ V ++ ++E + RFF A +L D
Sbjct: 1012 YGKFLSKLKG--PKQL-VAKLLEISDQYVYYKQLDEMAITFQEENRNR--RFFSAMVLND 1066
Query: 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLP-QTL 597
+++ V+ Y + +Q+ +N + A V FC++L W + L +L Q L
Sbjct: 1067 LIHEVPLSMVSTKYNLNRGTVQSLMNGAASHAWMVSLFCKKLG--WVELEALVNLYIQRL 1124
Query: 598 MYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEM 641
+ L+++ GVK RAR L AG+ +++ IA A +E+
Sbjct: 1125 DKGVRHEIVPLVEINGVKQARARALWAAGFKTVKSIALASPEEL 1168
Score = 44 (20.5 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 208 KEYKKQEKEDLIE-ALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTL 266
++ +KQ+++ IE + +N +S ++EEC + + T +RR +++ Y
Sbjct: 401 QQQQKQKEQQKIEYKIICDNPKLISNDIEECCVKIFGLPKSVGTIYKRRGMKQLY---DW 457
Query: 267 QIICCT-STLAAGVNL 281
Q C + S L G NL
Sbjct: 458 QKECLSDSNLLLGENL 473
>TAIR|locus:2125677 [details] [associations]
symbol:AT4G32700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA;IGI] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0009640 "photomorphogenesis" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IGI] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00482 SMART:SM00490 GO:GO:0005524
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0006260
GO:GO:0009640 GO:GO:0006310 GO:GO:0010468 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:AB192295 IPI:IPI00570534 RefSeq:NP_001078482.1
UniGene:At.48069 ProteinModelPortal:Q588V7 SMR:Q588V7 STRING:Q588V7
PRIDE:Q588V7 EnsemblPlants:AT4G32700.2 GeneID:829406
KEGG:ath:AT4G32700 TAIR:At4g32700 HOGENOM:HOG000030860
PhylomeDB:Q588V7 ProtClustDB:CLSN2698843 Genevestigator:Q588V7
Uniprot:Q588V7
Length = 2154
Score = 491 (177.9 bits), Expect = 2.1e-61, Sum P(3) = 2.1e-61
Identities = 132/421 (31%), Positives = 209/421 (49%)
Query: 100 IQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADN 159
+QI MSAT+ N+ A++ +++ Y RP EY+ V ++ K + +
Sbjct: 690 LQIVGMSATMPNVGAVADWLQAALYQTEFRPVPLEEYIKVGSTIYN----KKMEVVRTIP 745
Query: 160 LDYSLTGSGPDAVLHL----VQGNLMVLIFCSSKIACSNLALRLQ--FDRFPGTKEYKKQ 213
+ G PD ++ L VQ VLIFCSS+ C + A + P + +
Sbjct: 746 KAADMGGKDPDHIVELCNEVVQEGNSVLIFCSSRKGCESTARHISKLIKNVPVNVDGENS 805
Query: 214 EKEDL---IEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIIC 270
E D+ I+AL+ G + LEE + GVAYHHA LT ER ++E Y G ++++
Sbjct: 806 EFMDIRSAIDALRRSPSG-VDPVLEETLPSGVAYHHAGLTVEEREIVETCYRKGLVRVLT 864
Query: 271 CTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQD 330
TSTLAAGVNLPA+RVI R +GRDFI YKQM GRAGRTG+ G+S+++CK +
Sbjct: 865 ATSTLAAGVNLPARRVIFRQPMIGRDFIDGTRYKQMSGRAGRTGIDTKGDSVLICKP-GE 923
Query: 331 FLRFSSMMNAGPEPISSHM--DPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSP 388
R +++N P+ S + D + ILEVVA + + +D+ ++ TL K
Sbjct: 924 LKRIMALLNETCPPLQSCLSEDKNGMTHAILEVVAGGIVQTAKDIHRYVRCTLLNSTKPF 983
Query: 389 EDQQTFLETTLSEIVASLLASKGTMLTMNEAGHL-SLTSIAKAAVQAGLSHDVCLIIYSD 447
+D + + + + L K L NE L + T + + + + L + LI+ D
Sbjct: 984 QD----VVKSAQDSLRWLCHRK--FLEWNEETKLYTTTPLGRGSFGSSLCPEESLIVLDD 1037
Query: 448 LLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVT 507
LL + + + LH+++LV P+ + + L Y+R+ + P V +GV
Sbjct: 1038 LLRAREGLVMASDLHLVYLVTPINVGVEPNWELY-----YERFMELSPLEQSVGNRVGVV 1092
Query: 508 E 508
E
Sbjct: 1093 E 1093
Score = 152 (58.6 bits), Expect = 2.1e-61, Sum P(3) = 2.1e-61
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 4 EKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRI 63
EK + L E ++ Y G +G K S+ +CTIEK + LI L++E R+
Sbjct: 575 EKAEHLEVLLEPLGKHVRSYYGNQGGGTLPK----DTSVAVCTIEKANSLINRLLEEGRL 630
Query: 64 DEIGLIVIDEFHMLNEPQRGPILECVVSKVLY 95
E+G+IVIDE HM+ + RG +LE +++K+ Y
Sbjct: 631 SELGIIVIDELHMVGDQHRGYLLELMLTKLRY 662
Score = 102 (41.0 bits), Expect = 2.1e-61, Sum P(3) = 2.1e-61
Identities = 41/168 (24%), Positives = 72/168 (42%)
Query: 519 LKDEKKALLC-RFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFC 577
L DE+ +C RFF A IL ++ + +V + + + +Q F+S V FC
Sbjct: 1134 LSDEQMLRVCKRFFVALILSKLVQEASVTEVCEAFKVARGMVQALQENAGRFSSMVSVFC 1193
Query: 578 EELPELWC-YKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARA 636
E L W + L+ + + + L +P +K RAR L AG + + IA A
Sbjct: 1194 ERLG--WHDLEGLVAKFQNRVSFGVRAEIVELTSIPYIKGSRARALYKAGLRTSQAIAEA 1251
Query: 637 DAKEMVAKIRHLPLRSARNLISAAKLHF-ITKMDKVEAMKNLIQNLQK 683
E+V + +A ++H + K K A K +++ ++
Sbjct: 1252 SIPEIVKALFESSAWAAEGT-GQRRIHLGLAKKIKNGARKIVLEKAEE 1298
Score = 40 (19.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 157 ADNLDYSLTGSGPDAVLHLVQGNLMVLI 184
A+++D + + S + H+++G +L+
Sbjct: 2072 AEDVDTAASSSSSETRFHMLKGRCRILL 2099
Score = 39 (18.8 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 308 GRAGRTGLQESGESIMLCK 326
G G GLQ+S E M C+
Sbjct: 1342 GSVGPDGLQQSIEGHMECE 1360
Score = 38 (18.4 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 601 RAPNLRALMDLPGVKIGRARQLLNAG------YSSLELIARADAKEMVAKIRHLPLRSAR 654
R PN R + G A +L++ Y + E+ + + ++ + + H+PL S +
Sbjct: 1391 RLPNFRPIGTAVGTNGPSAVSILSSDTFPIPVYDNREIKPKDNVEQHLTRNDHIPLSSNK 1450
Query: 655 N 655
+
Sbjct: 1451 D 1451
>ZFIN|ZDB-GENE-040724-232 [details] [associations]
symbol:si:rp71-1p14.5 "si:rp71-1p14.5" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 ZFIN:ZDB-GENE-040724-232 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0003887 EMBL:CU928848
EMBL:CU695000 IPI:IPI00492363 Ensembl:ENSDART00000065556
Uniprot:F1Q4P4
Length = 2576
Score = 499 (180.7 bits), Expect = 8.9e-45, P = 8.9e-45
Identities = 173/602 (28%), Positives = 284/602 (47%)
Query: 100 IQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADN 159
+QI MSAT+ N++ L+ ++ Y N RP E+V + ++ DG SL +
Sbjct: 464 VQIIGMSATLPNLDLLARWLSAELYSTNYRPVPLMEWVKIGTNIY---DG-SLNLVRQFT 519
Query: 160 LDYSLTGSGPDAV---LHLVQGNLMVLIFCSSKIACSNLALRLQFDRFP-GTKEYKKQE- 214
+ G V VQ L+FC SK C LA + + + KE +
Sbjct: 520 PALPIKGDDDHIVSLCFETVQDGHSALLFCPSKNWCEKLADSIGREFYNLHHKEMQSGSG 579
Query: 215 -------KEDLIEALKE--ENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGT 265
+E L++ L + L L+ + +GVA+HHA LT ER ++E A+ G
Sbjct: 580 GQSISLNQEGLLDVLAQLKRTPAGLDHVLQRTVPWGVAFHHAGLTFDERDILEGAFRQGY 639
Query: 266 LQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLC 325
++++ TSTL++GVNLPA+RVIIR + + YKQMVGRAGR G+ GES+++C
Sbjct: 640 IRVLAATSTLSSGVNLPARRVIIRTPVFNGHLLDILTYKQMVGRAGRKGVDTIGESVLVC 699
Query: 326 KTMQDFLRFSSMMNAGPEPISSHMDP-------PTLVDLILEVVAANLCSSLEDVKTLIK 378
K + + S++ +PISS + +++ ILE++ + SS +DV+
Sbjct: 700 KEAER-AKGMSLIQGSLKPISSCLVKREGEGVTTSMLRAILEIIVGGVASSPQDVRMYAA 758
Query: 379 HTLFY-QLKSPEDQQTFLETTLSE---IVASL-LASKGTMLTMNEAGHLSL---TSIAKA 430
TL + + E Q E+ I A + + + + G + T + A
Sbjct: 759 CTLLAASIAAEEVHQDGSESEARNKGAIEACIEWLMDNEFIHIQKEGDVERYCPTHLGSA 818
Query: 431 AVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRY 490
+ + LS L I++DL F L N LH+L+ + P+ Y D + + + +
Sbjct: 819 TLSSSLSPPEALGIFADLQRAMKGFVLENDLHILYQITPV-Y---VDWTTIDWYQFFCLW 874
Query: 491 TKFHPQTLRVAEALGVTENLVALNVTGKL--KDEKK----ALLCRFFHACILYDVLNFDN 544
+ RVAE +G+ E +A +V GKL K EK+ A+ RFF +L D+++ +
Sbjct: 875 EQLPSAMKRVAEMVGIQEGFLARSVGGKLIAKTEKQRRQMAIHKRFFTTLVLLDLVSEEP 934
Query: 545 HQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPN 604
VAK YG LQ+ S +A V FC L W +LL Q+ +
Sbjct: 935 LGAVAKKYGCSRGQLQSLQQSASTYAGMVTVFCNRLG--WHNLELLLSQFQSRLSFGVQ- 991
Query: 605 LRALMDLPGVKI---GRARQLLNAGYSSLELIARADAKEMVAKIRH-LPLRSARNLISAA 660
R L DL + + RAR L ++G+ ++ +ARAD E+ +R +P +S+R + +
Sbjct: 992 -RELCDLVRISLLTAQRARTLYSSGFVTVAELARADVTEVEKALRKAIPFKSSRQAVDES 1050
Query: 661 KL 662
++
Sbjct: 1051 EV 1052
Score = 205 (77.2 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 61/207 (29%), Positives = 100/207 (48%)
Query: 13 AEEFKFYLE---EYAGVK--GQYPPTKRQ--LNKKSIYICTIEKGSKLIGSLIQENRIDE 65
A E FYL+ + AG++ G T + + +CTIEK + L+ LI+E+++D
Sbjct: 357 AREKMFYLQNVFQEAGIRVEGYMGSTSAAGGFSALDVAVCTIEKANGLVNRLIEEDKLDL 416
Query: 66 IGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKS-------------IQIFAMSATIGNI 112
+G +V+DE HM+ + RG +LE +++K+ Y+ + +QI MSAT+ N+
Sbjct: 417 LGTVVVDELHMVGDSGRGYLLELLLTKIRYIAQKTATRNSGQSTSTGVQIIGMSATLPNL 476
Query: 113 NALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAV 172
+ L+ ++ Y N RP E+V + ++ DG SL + + G V
Sbjct: 477 DLLARWLSAELYSTNYRPVPLMEWVKIGTNIY---DG-SLNLVRQFTPALPIKGDDDHIV 532
Query: 173 ---LHLVQGNLMVLIFCSSKIACSNLA 196
VQ L+FC SK C LA
Sbjct: 533 SLCFETVQDGHSALLFCPSKNWCEKLA 559
Score = 38 (18.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 238 ILYGVAYHHADLTAGERRLIEE 259
I YG+ Y + GE+ IEE
Sbjct: 2379 ICYGIIYGMGAKSLGEQMGIEE 2400
>UNIPROTKB|D4A628 [details] [associations]
symbol:Polq "Polymerase (DNA directed), theta (Predicted),
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
GO:GO:0003887 GO:GO:0043142 CTD:10721 KO:K02349 OrthoDB:EOG42RD6C
EMBL:CH473967 IPI:IPI00949142 RefSeq:NP_001099348.1
UniGene:Rn.131176 Ensembl:ENSRNOT00000063995 GeneID:288079
KEGG:rno:288079 NextBio:627549 Uniprot:D4A628
Length = 2547
Score = 487 (176.5 bits), Expect = 3.3e-43, P = 3.3e-43
Identities = 169/614 (27%), Positives = 293/614 (47%)
Query: 88 CVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSF 147
C L ++QI MSAT+ N+ +++++ Y + RP E + V ++ S
Sbjct: 248 CQADSASALACAVQIVGMSATLPNLQLVASWLNAELYHTDFRPVPLLESIKVGNSIYDSS 307
Query: 148 -----DGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLA------ 196
+ + L ++ D D+ ++ V+ N VL+FC SK C +A
Sbjct: 308 MKLVREFQPLLQVKGDE-DHIVS-----LCYETVRDNHSVLVFCPSKKWCEKVADIIARE 361
Query: 197 ---LRLQFDRFPGTKEYKK---QEKE--DLIEALKEENDGKLSTNLEECILYGVAYHHAD 248
L Q + + E+ +K ++I+ LK G L + L+ + +GVA+HHA
Sbjct: 362 FYNLHHQPEGLVKSSEFPPVILDQKSLLEVIDQLKRSPSG-LDSVLKNTVPWGVAFHHAG 420
Query: 249 LTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVG 308
LT ER +IE A+ G ++++ TSTL++GVNLPA+RVIIR G + + YKQMVG
Sbjct: 421 LTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPVFGGQPLDILTYKQMVG 480
Query: 309 RAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPP-----TLVDLILEVVA 363
RAGR G+ GESI++CK + + +++ EP+ S + T++ ILE++
Sbjct: 481 RAGRKGVDTMGESILVCKNSEKS-KGIALLQGSLEPVHSCLQSQGEVTSTMIRAILEIIV 539
Query: 364 ANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNE---AG 420
+ + S+ +D++T T F E +Q ++ ++ + + T L NE A
Sbjct: 540 SGVASTSQDMQTYAACT-FLAADVKEGKQG-IQRNRDDVQRGAVDACVTWLLENEFIQAA 597
Query: 421 HLS---------LTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLE 471
S T + A + + LS L I++DL F L N LH+++LV P
Sbjct: 598 EPSDGTGGKVYHPTHLGSATLSSSLSPTDTLDIFADLQRAMKGFVLENDLHIVYLVTP-- 655
Query: 472 YRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL--KDEKK----A 525
+ D + + + + K RVAE +GV E +A V GK+ + E++ A
Sbjct: 656 --VFEDWTSIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVARTERQHRQMA 713
Query: 526 LLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWC 585
+ RFF + +L D+++ +++ + YG +Q+ + +A + F L W
Sbjct: 714 IHKRFFTSLVLLDLISEIPLKEINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLG--WH 771
Query: 586 YKQLL-TDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAK 644
+LL + + L + L L+ + + RAR L +G+ ++ +ARAD E+ A
Sbjct: 772 NMELLLSQFQKRLTFGIQRELCDLIRVSSLNAQRARFLYASGFLTVADLARADTVEVEAA 831
Query: 645 IRH-LPLRSARNLI 657
++ LP +SAR +
Sbjct: 832 LKDALPFKSARKAV 845
Score = 211 (79.3 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 65/211 (30%), Positives = 108/211 (51%)
Query: 13 AEEFKFYLE---EYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRID 64
A+E K+YL+ + G+K G PT R + + +CTIE+ + LI LI+EN++D
Sbjct: 151 AKEKKYYLQSLFQEVGIKVDGYMGSTSPTGR-FSSLDVAVCTIERANGLINRLIEENKMD 209
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYL-KKS--------------IQIFAMSATI 109
+G +V+DE HML + RG +LE +++KV ++ +KS +QI MSAT+
Sbjct: 210 LLGTVVVDELHMLGDSHRGYLLELLLTKVCFVTRKSASCQADSASALACAVQIVGMSATL 269
Query: 110 GNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGP 169
N+ +++++ Y + RP E + V ++ S L + L + G
Sbjct: 270 PNLQLVASWLNAELYHTDFRPVPLLESIKVGNSIYDS--SMKLVREFQPLLQ--VKGD-E 324
Query: 170 DAVLHL----VQGNLMVLIFCSSKIACSNLA 196
D ++ L V+ N VL+FC SK C +A
Sbjct: 325 DHIVSLCYETVRDNHSVLVFCPSKKWCEKVA 355
>FB|FBgn0002905 [details] [associations]
symbol:mus308 "mutagen-sensitive 308" species:7227
"Drosophila melanogaster" [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS;NAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IMP] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR003583 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00278 SMART:SM00482 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006200 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
GO:GO:0006303 GO:GO:0006289 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:L76559 EMBL:BT044169 PIR:T13858 RefSeq:NP_524333.1
UniGene:Dm.23677 HSSP:P00582 SMR:O18475 STRING:O18475
EnsemblMetazoa:FBtr0082662 GeneID:41571 KEGG:dme:Dmel_CG6019
UCSC:CG6019-RA CTD:41571 FlyBase:FBgn0002905 InParanoid:O18475
OrthoDB:EOG4FJ6QM GenomeRNAi:41571 NextBio:824448 Uniprot:O18475
Length = 2059
Score = 478 (173.3 bits), Expect = 3.1e-42, P = 3.1e-42
Identities = 168/614 (27%), Positives = 293/614 (47%)
Query: 100 IQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADN 159
IQ+ MSAT+ N+ L ++++ Y+ N RP E + V ++ K + ++
Sbjct: 389 IQVITMSATLENVQLLQSWLDAELYITNYRPVALKEMIKVGTVIYDH-RLKLVRDVAKQK 447
Query: 160 -LDYSLTGSGPDAVLHLVQGNL---MVLIFCSSKIACSNLALRL--------QFDRFPGT 207
L L D L ++ L V++FC SK C NLA++L + + G
Sbjct: 448 VLLKGLENDSDDVALLCIETLLEGCSVIVFCPSKDWCENLAVQLATAIHVQIKSETVLGQ 507
Query: 208 KEYKKQEKEDLIEALKEENDGKLSTNLE----ECILYGVAYHHADLTAGERRLIEEAYLA 263
+ + E ++ D + T L+ + I Y A+HHA LT ER +IE ++ A
Sbjct: 508 RLRTNLNPRAIAEVKQQLRD--IPTGLDGVMSKAITYACAFHHAGLTTEERDIIEASFKA 565
Query: 264 GTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIM 323
G L+++ TSTL++GVNLPA+RV+IR G +S Y+QM+GRAGR G GESI+
Sbjct: 566 GALKVLVATSTLSSGVNLPARRVLIRSPLFGGKQMSSLTYRQMIGRAGRMGKDTLGESIL 625
Query: 324 LCKTMQDFLRFSSMMNAGPEPISS--HMDPPT-LVDLILEVVAANLCSSLEDVKTLIKHT 380
+C + + ++ + +PI+S MD T L +LEV+++ + ++ ED+ + T
Sbjct: 626 ICNEINARMG-RDLVVSELQPITSCLDMDGSTHLKRALLEVISSGVANTKEDIDFFVNCT 684
Query: 381 L------FYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSL---TSIAKAA 431
L F+ + P D+++ +++ + L+ + L NE ++ T + A
Sbjct: 685 LLSAQKAFHAKEKPPDEESDANY-INDALDFLVEYEFVRLQRNEERETAVYVATRLGAAC 743
Query: 432 VQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLE--YRIPSDGILLSRSKVYDR 489
+ + + LI++++L ++ +F L + LH ++LV P Y++ LL V+
Sbjct: 744 LASSMPPTDGLILFAELQKSRRSFVLESELHAVYLVTPYSVCYQLQDIDWLLY---VH-M 799
Query: 490 YTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLC--RFFHACILYDVLNFDNHQK 547
+ K +V E +GV + + + G+ K + K + RF+ A L +++N
Sbjct: 800 WEKLSSPMKKVGELVGVRDAFLYKALRGQTKLDYKQMQIHKRFYIALALEELVNETPINV 859
Query: 548 VAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLL-TDLPQTLMYCRAPNLR 606
V Y LQ+ + S FA V FC L W L+ + L + +L
Sbjct: 860 VVHKYKCHRGMLQSLQQMASTFAGIVTAFCNSLQ--WSTLALIVSQFKDRLFFGIHRDLI 917
Query: 607 ALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAKLHFIT 666
LM +P + RAR L +AG +SL +A AD E+ K+ + + +AK H
Sbjct: 918 DLMRIPDLSQKRARALFDAGITSLVELAGADPVEL-EKVLYNSIS-----FDSAKQHDHE 971
Query: 667 KMDKVEAMKNLIQN 680
D+ A +N+++N
Sbjct: 972 NADEA-AKRNVVRN 984
Score = 238 (88.8 bits), Expect = 8.6e-16, P = 8.6e-16
Identities = 55/183 (30%), Positives = 98/183 (53%)
Query: 25 GVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGP 84
G G Y P + ICTIEK + ++ L+++ +++ IG++V+DE H++++ RG
Sbjct: 311 GFYGGYTPPGG-FESLHVAICTIEKANSIVNKLMEQGKLETIGMVVVDEVHLISDKGRGY 369
Query: 85 ILECVVSKVLYLKK----SIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVD 140
ILE +++K+LY+ + IQ+ MSAT+ N+ L ++++ Y+ N RP E + V
Sbjct: 370 ILELLLAKILYMSRRNGLQIQVITMSATLENVQLLQSWLDAELYITNYRPVALKEMIKVG 429
Query: 141 KRVFQSFDGKSLTEIYADN-LDYSLTGSGPDAVLHLVQGNL---MVLIFCSSKIACSNLA 196
++ K + ++ L L D L ++ L V++FC SK C NLA
Sbjct: 430 TVIYDH-RLKLVRDVAKQKVLLKGLENDSDDVALLCIETLLEGCSVIVFCPSKDWCENLA 488
Query: 197 LRL 199
++L
Sbjct: 489 VQL 491
>WB|WBGene00020964 [details] [associations]
symbol:polq-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887 KO:K02349
EMBL:FO081687 EMBL:FO081686 RefSeq:NP_498250.3
ProteinModelPortal:A0FLQ6 PaxDb:A0FLQ6 EnsemblMetazoa:W03A3.2
GeneID:175810 KEGG:cel:CELE_W03A3.2 UCSC:W03A3.2 CTD:175810
WormBase:W03A3.2 InParanoid:A0FLQ6 OMA:EASIPEI NextBio:889766
Uniprot:A0FLQ6
Length = 1661
Score = 447 (162.4 bits), Expect = 4.4e-38, Sum P(2) = 4.4e-38
Identities = 161/549 (29%), Positives = 257/549 (46%)
Query: 44 ICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKS---- 99
+CTIEK + L + E+ +EIG+IV+DE HM+ + RG +E ++SKVL +S
Sbjct: 121 VCTIEKAASLTNRALSEDWFEEIGMIVVDEMHMVFDSSRGAHIEHMLSKVLLWNQSALEK 180
Query: 100 IQIFAMSATIGNINALSTFIEGITYVE-NSRPTKHSEYVTVDKRVFQSFDGKSLTEIYAD 158
++I MSATI + + +++G E RP ++ + + +S D K L E D
Sbjct: 181 VRIIGMSATIPELYRIGKWLDGAKVFEARFRPIVLQNHIVIGSELRKSGDNKVLREFSED 240
Query: 159 NLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDL 218
L LT + N L+ SSK+ AL + RF E K + L
Sbjct: 241 PL-ILLTEES-------FRRNSQTLVMISSKLDAEKTALNIA-SRF---HEINKTDSS-L 287
Query: 219 IEALKEENDGKL------------STNLEECILYGVAYHHADLTAGERRLIEEAYLAGTL 266
+E LKE +G L N+ + +GVAYHHA LT ER IE + +
Sbjct: 288 LEILKERANGLLFIKHGLERNGCKDRNVMSTLAWGVAYHHAGLTMEERECIELGFREKNI 347
Query: 267 QIICCTSTLAAGVNLPAQRVIIRDSYVGRDFI-SLNMYKQMVGRAGRTGLQESGESIMLC 325
I+ TSTLA+GVNLPA+RV+I+ G + SLN Y+QMVGRAGRTG GE+ +L
Sbjct: 348 VILVATSTLASGVNLPAERVLIKAQPRGPSALTSLN-YRQMVGRAGRTGHATRGETYLLI 406
Query: 326 KTM-QD-FLRF-SSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLF 382
K +D L+ + ++ G + L ILE + L ++ + L K LF
Sbjct: 407 KKCDRDAVLKIIETPIDQGVLTRKRDAERTNLSRFILEGICTGLTTTRSQIHDLCKLLLF 466
Query: 383 YQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAG-HLSLTSIAKAAVQAGLSHDVC 441
+ E+ Q LS+I +L + + ++ +E LS T + +AA+ + L +
Sbjct: 467 ----NSENLQ------LSDIAIEMLL-RNSFISQDENDDQLSPTQLGRAAIASSLPPEAS 515
Query: 442 LIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVA 501
L I+ DL L LHML+LV Y+ I+ K+Y + + L
Sbjct: 516 LAIFEDLNSASRAIALDTELHMLYLVY--FYKNSRAQIIQKIFKIYSIFILKKFKNLEPK 573
Query: 502 EALGVTENLVALNVTGKLKDEKKALL-----------CRFFHACILYDVLNFDNHQKVAK 550
++EN + +++T ++ ++ C + H ++ L D H+++AK
Sbjct: 574 FKKKISEN-ITVHITNSIRKKQHFWHVTPINVSVWQECDWHHLFSIFSKLPSD-HKRIAK 631
Query: 551 MYGIQNSHL 559
+ G+ +
Sbjct: 632 LVGVSEKFI 640
Score = 141 (54.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 39/157 (24%), Positives = 76/157 (48%)
Query: 486 VYDRYTKFHPQTLRVAEALGVTENLVALNVTGKLKDEKKALLCRFFHACILYDVLNFDNH 545
++ ++K R+A+ +GV+E + + G+ D+ + RFF A L+D+++ +
Sbjct: 615 LFSIFSKLPSDHKRIAKLVGVSEKFILDQLQGRRNDKLLQIHIRFFSALALFDLISEMSI 674
Query: 546 QKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCY-KQLLTDLPQTLMYCRAPN 604
+V+ Y I LQ + ++ +A+ + FC L W Y K LL L++
Sbjct: 675 YEVSHKYRIPRGCLQTLQSQSATYAAMIVAFCLRLG--WTYLKALLDGFATRLLFGVRSE 732
Query: 605 LRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEM 641
L L+ + G+ RAR L G + L ++ D+ ++
Sbjct: 733 LSELVAIEGIDGQRARILHERGVTCLSHLSACDSSKL 769
Score = 42 (19.8 bits), Expect = 4.4e-38, Sum P(2) = 4.4e-38
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 546 QKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQ 595
++VA Y IQ S + F SK+ F ++ L + ++L + P+
Sbjct: 1573 ERVAVNYTIQGSASEIFKTAIVDIESKIKEFGAQIV-LTIHDEVLVECPE 1621
>UNIPROTKB|F1NMU1 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0006281 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 GO:GO:0003887 GO:GO:0043142 EMBL:AADN02037908
IPI:IPI00584654 Ensembl:ENSGALT00000024072 Uniprot:F1NMU1
Length = 904
Score = 405 (147.6 bits), Expect = 1.4e-34, P = 1.4e-34
Identities = 132/461 (28%), Positives = 225/461 (48%)
Query: 100 IQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADN 159
IQ+ MSAT+ N+ L+++++ Y + RP E+V + ++ S +L +
Sbjct: 224 IQVVGMSATLPNLGLLASWLDAELYCTDFRPVPLKEWVKIGNNIYDS--SMNLVREFQPK 281
Query: 160 LDYSLTGSGPDAV---LHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEK- 215
L L G V V VL+FC SK C LA + + + + K K
Sbjct: 282 LQ--LKGDEDHVVSLCYETVCDGHSVLLFCPSKNWCEKLADIIAREFYSLQQAEKGSAKN 339
Query: 216 -------------EDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYL 262
+++++ L+ G L + L+ + +GVA+HHA LT ER +IE A+
Sbjct: 340 SSLSPVVVDREGIDEVLDQLRRSLSG-LDSVLQRTLPWGVAFHHAGLTFDERDIIEGAFR 398
Query: 263 AGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESI 322
T++++ TSTL++GVNLPA+RVIIR G + + YKQM GRAGR G+ GESI
Sbjct: 399 QSTIRVLAATSTLSSGVNLPARRVIIRTPMFGGTLLDVLTYKQMAGRAGRKGVDTEGESI 458
Query: 323 MLCKTMQDFLRFSSMMNAGPEPISSHM-------DPPTLVDLILEVVAANLCSSLEDVKT 375
++CK + + ++++ +P+ S + ++ ILE++ + + ++ +DV+T
Sbjct: 459 LVCKPSERS-KGTALLQGSLKPVRSCLLRKEGEGVASSMKRAILEIIVSGVANTPDDVQT 517
Query: 376 LIKHTLFYQ-LKSP----EDQQTFLET-TLSEIVASLLASKGTMLTMN----EAGHLSLT 425
TL LK E +Q ++T + +A LL ++ + +A T
Sbjct: 518 YASCTLLASSLKDNKRENEKEQDKVQTGPIEACIAWLLENEFIQVLERADDKKAKIFHPT 577
Query: 426 SIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSK 485
+ A + + LS + I+SDL +F L N LH+++LV P+ Y D + +
Sbjct: 578 HLGSATLSSSLSPTEAMEIFSDLQRAMKSFVLENDLHIVYLVTPV-YE---DWTTIDWYQ 633
Query: 486 VYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL--KDEKK 524
+ + K RVAE +G+ E +A +V GK+ K EK+
Sbjct: 634 FFCLWEKLPASMKRVAELVGIEEGFLARSVKGKITAKTEKQ 674
Score = 219 (82.2 bits), Expect = 8.5e-32, Sum P(2) = 8.5e-32
Identities = 62/191 (32%), Positives = 97/191 (50%)
Query: 25 GVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGP 84
G G P R + + +CTIEK + LI LI+EN++D +G++V+DE HML + RG
Sbjct: 135 GYMGSISPAGR-FSLLDVAVCTIEKANGLINRLIEENQMDSLGVVVVDELHMLGDSHRGY 193
Query: 85 ILECVVSKVLYLK----------KS-----IQIFAMSATIGNINALSTFIEGITYVENSR 129
+LE +++KV Y+ KS IQ+ MSAT+ N+ L+++++ Y + R
Sbjct: 194 LLELLLTKVRYITEKAAKRKTKMKSPGFGGIQVVGMSATLPNLGLLASWLDAELYCTDFR 253
Query: 130 PTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLM----VLIF 185
P E+V + ++ S +L + L L G D V+ L + VL+F
Sbjct: 254 PVPLKEWVKIGNNIYDS--SMNLVREFQPKLQ--LKGD-EDHVVSLCYETVCDGHSVLLF 308
Query: 186 CSSKIACSNLA 196
C SK C LA
Sbjct: 309 CPSKNWCEKLA 319
Score = 218 (81.8 bits), Expect = 8.5e-32, Sum P(2) = 8.5e-32
Identities = 86/320 (26%), Positives = 150/320 (46%)
Query: 358 ILEVVAANLCSSLEDVKTLIKHTLFYQ-LKSP----EDQQTFLET-TLSEIVASLLASKG 411
ILE++ + + ++ +DV+T TL LK E +Q ++T + +A LL ++
Sbjct: 500 ILEIIVSGVANTPDDVQTYASCTLLASSLKDNKRENEKEQDKVQTGPIEACIAWLLENEF 559
Query: 412 TMLTMN----EAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLV 467
+ +A T + A + + LS + I+SDL +F L N LH+++LV
Sbjct: 560 IQVLERADDKKAKIFHPTHLGSATLSSSLSPTEAMEIFSDLQRAMKSFVLENDLHIVYLV 619
Query: 468 IPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL--KDEKK- 524
P+ Y D + + + + K RVAE +G+ E +A +V GK+ K EK+
Sbjct: 620 TPV-YE---DWTTIDWYQFFCLWEKLPASMKRVAELVGIEEGFLARSVKGKITAKTEKQY 675
Query: 525 ---ALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELP 581
A+ RFF + L D+++ + + K YG LQ+ + +A V FC L
Sbjct: 676 RQMAIHKRFFTSLALLDLISEVPLKDMTKKYGCSRGQLQSLQQSAATYAGMVTVFCNRLG 735
Query: 582 ELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKI---GRARQLLNAGYSSLELIARADA 638
W +LL Q+ + R L DL V + RAR L NAG+ ++ +A+A
Sbjct: 736 --WHNMELLLSQFQSRLTFGVH--RELCDLVRVSLLNAQRARMLYNAGFVTVADLAKASP 791
Query: 639 KEMVAKIRH-LPLRSARNLI 657
++ +++ +P +S R +
Sbjct: 792 GDVATALKNSVPFKSGRRAV 811
Score = 41 (19.5 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 12/61 (19%), Positives = 30/61 (49%)
Query: 42 IYIC--TIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKS 99
+ +C T+ G ++ +N +++ I+ EF+ L + ++G +S V+ ++
Sbjct: 292 VSLCYETVCDGHSVLLFCPSKNWCEKLADIIAREFYSLQQAEKGSAKNSSLSPVVVDREG 351
Query: 100 I 100
I
Sbjct: 352 I 352
>UNIPROTKB|F1PXD9 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AAEX03017021 Ensembl:ENSCAFT00000018256
OMA:NECHITF Uniprot:F1PXD9
Length = 1835
Score = 407 (148.3 bits), Expect = 3.0e-34, P = 3.0e-34
Identities = 135/458 (29%), Positives = 216/458 (47%)
Query: 96 LKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEI 155
L ++QI MSAT+ N+ +++++ Y N RP E V + ++ S L
Sbjct: 164 LSNAVQIVGMSATLPNLEIVASWLNAELYHTNFRPVPLLESVKIGNSIYDS--SMKLVRE 221
Query: 156 YADNLDYSLTGSGPDAV---LHLVQGNLMVLIFCSSKIACSNLA--LRLQFDRF--PGTK 208
+ NL + G V + N VLIFC SK C LA + +F T
Sbjct: 222 FQPNLQ--VKGDEDHVVSLCYETICDNHSVLIFCPSKKWCEKLADIIACEFYNLHHQATG 279
Query: 209 EYKKQE-------KEDLIEA---LKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258
+ E ++ L+E LK G L + L++ I +GVA+HHA LT ER +IE
Sbjct: 280 LVRSSELPPVVLEQKGLLEVMDQLKRSPSG-LDSVLQKTIPWGVAFHHAGLTFEERDIIE 338
Query: 259 EAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQES 318
A+ G ++++ TSTL++GVNLPA+RVIIR G + + YKQMVGRAGR G+
Sbjct: 339 GAFRQGQIRVLAATSTLSSGVNLPARRVIIRTPIFGGQPLDILTYKQMVGRAGRKGVDTV 398
Query: 319 GESIMLCKTMQDFLRFSSMMNAGPEPISSHMD-------PPTLVDLILEVVAANLCSSLE 371
GESI++CK + + +++ +P+ S + +++ ILE++ + S+ +
Sbjct: 399 GESILVCKNSEKS-KGIALLQGSLKPVRSCLQRQKGEEVTASMIRAILEIIVGGVASTSQ 457
Query: 372 DVKTLIKHTLFY------QLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSL- 424
D++T T +L S ++Q + V LL ++ +T G
Sbjct: 458 DMQTYASCTFLAASMKEGKLGSQKNQDCVQLGAIEACVMWLLENEFIQITETGDGTEGTV 517
Query: 425 ---TSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILL 481
T + A + + LS L I++DL F L N LH+++LV P+ D +
Sbjct: 518 YHPTHLGSATLSSSLSPTDTLDIFADLQRAMKGFVLENDLHIVYLVTPMF----EDWATI 573
Query: 482 SRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL 519
+ + + K RVAE +GV E +A V GK+
Sbjct: 574 DWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKV 611
Score = 221 (82.9 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 67/211 (31%), Positives = 103/211 (48%)
Query: 13 AEEFKFYLEEYA--------GVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRID 64
A+E K+YL+ G G PT + I +CTIE+ + LI LI+EN++D
Sbjct: 59 AKEKKYYLQSLFQEIGINVDGYMGSTSPTGH-FSSLDIAVCTIERANGLINRLIEENKMD 117
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLY---------------LKKSIQIFAMSATI 109
+G++V+DE HML + RG +LE +++K+ Y L ++QI MSAT+
Sbjct: 118 LLGMVVVDELHMLGDSHRGYLLELLLTKICYITHKSASCQADLASPLSNAVQIVGMSATL 177
Query: 110 GNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGP 169
N+ +++++ Y N RP E V + ++ S L + NL + G
Sbjct: 178 PNLEIVASWLNAELYHTNFRPVPLLESVKIGNSIYDS--SMKLVREFQPNLQ--VKGD-E 232
Query: 170 DAVLHL----VQGNLMVLIFCSSKIACSNLA 196
D V+ L + N VLIFC SK C LA
Sbjct: 233 DHVVSLCYETICDNHSVLIFCPSKKWCEKLA 263
Score = 191 (72.3 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 77/323 (23%), Positives = 148/323 (45%)
Query: 353 TLVDLILEVVAANLCSSLEDVKTLIKHTLFY------QLKSPEDQQTFLETTLSEIVASL 406
+++ ILE++ + S+ +D++T T +L S ++Q + V L
Sbjct: 439 SMIRAILEIIVGGVASTSQDMQTYASCTFLAASMKEGKLGSQKNQDCVQLGAIEACVMWL 498
Query: 407 LASKGTMLTMNEAGHLSL----TSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLH 462
L ++ +T G T + A + + LS L I++DL F L N LH
Sbjct: 499 LENEFIQITETGDGTEGTVYHPTHLGSATLSSSLSPTDTLDIFADLQRAMKGFVLENDLH 558
Query: 463 MLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL--K 520
+++LV P+ D + + + + K RVAE +GV E +A V GK+ +
Sbjct: 559 IVYLVTPMF----EDWATIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVAR 614
Query: 521 DEKK----ALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRF 576
E++ A+ RFF + +L D+++ +++ + YG +Q+ + +A + F
Sbjct: 615 TERQHRQMAIHKRFFTSLVLLDLISEVPLKEINQKYGCSRGQIQSLQQSAAVYAGMITVF 674
Query: 577 CEELPELWCYKQLL-TDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIAR 635
L W +LL + + L + L L+ + + RAR L +G+ ++ +AR
Sbjct: 675 SNRLG--WHNMELLLSQFQKRLTFGIQRELCDLVRVSLLNAQRARFLYASGFLTVADLAR 732
Query: 636 ADAKEMVAKIRH-LPLRSARNLI 657
A+ E+ A +++ +P +SAR +
Sbjct: 733 ANIAEVEAVLKNAVPFKSARKAV 755
Score = 41 (19.5 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 295 RDFISLNMYKQMVGRA---GRTGLQESGESIMLCKTMQDFLRFSS 336
R +SLN+ ++ + + GR ++ ++++ KT ++ L FSS
Sbjct: 898 RKQVSLNINREKLKTSLNEGRRHTKKVVQTLLFEKTKKEALNFSS 942
Score = 41 (19.5 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 256 LIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFI---SLNMYKQMVGRAGR 312
LI + G+ + STL V L +++ +G+ + S N+ Q + R
Sbjct: 1643 LIPPTPIPGSASKLVFPSTLETSVKLRNTHSVLQ---LGKSYSFGSSSNIKNQDLSSESR 1699
Query: 313 TGLQESG 319
GL++ G
Sbjct: 1700 NGLEDDG 1706
>RGD|1309795 [details] [associations]
symbol:Polq "polymerase (DNA directed), theta" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISO] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003887 OMA:CFSDESI IPI:IPI00362354
Ensembl:ENSRNOT00000034841 UCSC:RGD:1309795 Uniprot:D4ABI8
Length = 2540
Score = 397 (144.8 bits), Expect = 5.8e-33, P = 5.8e-33
Identities = 134/468 (28%), Positives = 223/468 (47%)
Query: 88 CVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSF 147
C L ++QI MSAT+ N+ +++++ Y + RP E + V ++ S
Sbjct: 248 CQADSASALACAVQIVGMSATLPNLQLVASWLNAELYHTDFRPVPLLESIKVGNSIYDSS 307
Query: 148 -----DGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLA------ 196
+ + L ++ D D+ ++ V+ N VL+FC SK C +A
Sbjct: 308 MKLVREFQPLLQVKGDE-DHIVS-----LCYETVRDNHSVLVFCPSKKWCEKVADIIARE 361
Query: 197 ---LRLQFDRFPGTKEYKK---QEKE--DLIEALKEENDGKLSTNLEECILYGVAYHHAD 248
L Q + + E+ +K ++I+ LK G L + L+ + +GVA+HHA
Sbjct: 362 FYNLHHQPEGLVKSSEFPPVILDQKSLLEVIDQLKRSPSG-LDSVLKNTVPWGVAFHHAG 420
Query: 249 LTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVG 308
LT ER +IE A+ G ++++ TSTL++GVNLPA+RVIIR G + + YKQMVG
Sbjct: 421 LTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPVFGGQPLDILTYKQMVG 480
Query: 309 RAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPP-----TLVDLILEVVA 363
RAGR G+ GESI++CK + + +++ EP+ S + T++ ILE++
Sbjct: 481 RAGRKGVDTMGESILVCKNSEKS-KGIALLQGSLEPVHSCLQSQGEVTSTMIRAILEIIV 539
Query: 364 ANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNE---AG 420
+ + S+ +D++T T F E +Q ++ ++ + + T L NE A
Sbjct: 540 SGVASTSQDMQTYAACT-FLAADVKEGKQG-IQRNRDDVQRGAVDACVTWLLENEFIQAA 597
Query: 421 HLS---------LTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLE 471
S T + A + + LS L I++DL F L N LH+++LV P
Sbjct: 598 EPSDGTGGKVYHPTHLGSATLSSSLSPTDTLDIFADLQRAMKGFVLENDLHIVYLVTP-- 655
Query: 472 YRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL 519
+ D + + + + K RVAE +GV E +A V GK+
Sbjct: 656 --VFEDWTSIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKV 701
Score = 211 (79.3 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 65/211 (30%), Positives = 108/211 (51%)
Query: 13 AEEFKFYLE---EYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRID 64
A+E K+YL+ + G+K G PT R + + +CTIE+ + LI LI+EN++D
Sbjct: 151 AKEKKYYLQSLFQEVGIKVDGYMGSTSPTGR-FSSLDVAVCTIERANGLINRLIEENKMD 209
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYL-KKS--------------IQIFAMSATI 109
+G +V+DE HML + RG +LE +++KV ++ +KS +QI MSAT+
Sbjct: 210 LLGTVVVDELHMLGDSHRGYLLELLLTKVCFVTRKSASCQADSASALACAVQIVGMSATL 269
Query: 110 GNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGP 169
N+ +++++ Y + RP E + V ++ S L + L + G
Sbjct: 270 PNLQLVASWLNAELYHTDFRPVPLLESIKVGNSIYDS--SMKLVREFQPLLQ--VKGD-E 324
Query: 170 DAVLHL----VQGNLMVLIFCSSKIACSNLA 196
D ++ L V+ N VL+FC SK C +A
Sbjct: 325 DHIVSLCYETVRDNHSVLVFCPSKKWCEKVA 355
Score = 185 (70.2 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 81/327 (24%), Positives = 149/327 (45%)
Query: 353 TLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGT 412
T++ ILE++ + + S+ +D++T T F E +Q ++ ++ + + T
Sbjct: 529 TMIRAILEIIVSGVASTSQDMQTYAACT-FLAADVKEGKQG-IQRNRDDVQRGAVDACVT 586
Query: 413 MLTMNE---AGHLS---------LTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNS 460
L NE A S T + A + + LS L I++DL F L N
Sbjct: 587 WLLENEFIQAAEPSDGTGGKVYHPTHLGSATLSSSLSPTDTLDIFADLQRAMKGFVLEND 646
Query: 461 LHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL- 519
LH+++LV P + D + + + + K RVAE +GV E +A V GK+
Sbjct: 647 LHIVYLVTP----VFEDWTSIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVV 702
Query: 520 -KDEKK----ALLCR--FFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASK 572
+ E++ A+ R FF + +L D+++ +++ + YG +Q+ + +A
Sbjct: 703 ARTERQHRQMAIHKRQAFFTSLVLLDLISEIPLKEINQKYGCNRGQIQSLQQSAAVYAGM 762
Query: 573 VYRFCEELPELWCYKQLL-TDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLE 631
+ F L W +LL + + L + L L+ + + RAR L +G+ ++
Sbjct: 763 ITVFSNRLG--WHNMELLLSQFQKRLTFGIQRELCDLIRVSSLNAQRARFLYASGFLTVA 820
Query: 632 LIARADAKEMVAKIRH-LPLRSARNLI 657
+ARAD E+ A ++ LP +SAR +
Sbjct: 821 DLARADTVEVEAALKDALPFKSARKAV 847
Score = 40 (19.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 40 KSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKS 99
+SI +C + SK I +L+Q + ++ + + + + + R ILE +VS V +
Sbjct: 492 ESILVCKNSEKSKGI-ALLQGS-LEPVHSCLQSQGEVTSTMIRA-ILEIIVSGVASTSQD 548
Query: 100 IQIFA 104
+Q +A
Sbjct: 549 MQTYA 553
Score = 39 (18.8 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 203 RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGV 242
R GT K++ +D I+ L N G LE+ +GV
Sbjct: 51 RLAGTGTCKQRVSDDQIDQLLLANWGLPKAVLEKYHNFGV 90
>UNIPROTKB|O75417 [details] [associations]
symbol:POLQ "DNA polymerase theta" species:9606 "Homo
sapiens" [GO:0006260 "DNA replication" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271
Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194
SMART:SM00482 SMART:SM00490 GO:GO:0005524 GO:GO:0005654
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098
EMBL:AC069239 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 GO:GO:0008026 GO:GO:0003887 GO:GO:0043142
EMBL:AF052573 EMBL:AY338826 EMBL:AC079841 EMBL:AF043628
IPI:IPI00794779 IPI:IPI01012356 RefSeq:NP_955452.3
UniGene:Hs.241517 ProteinModelPortal:O75417 STRING:O75417
PhosphoSite:O75417 PaxDb:O75417 PRIDE:O75417 DNASU:10721
Ensembl:ENST00000264233 GeneID:10721 KEGG:hsa:10721 UCSC:uc003eed.3
UCSC:uc003eee.4 CTD:10721 GeneCards:GC03M121150 H-InvDB:HIX0030706
HGNC:HGNC:9186 HPA:HPA048931 MIM:604419 neXtProt:NX_O75417
PharmGKB:PA33506 HOGENOM:HOG000146444 HOVERGEN:HBG005525 KO:K02349
OrthoDB:EOG42RD6C ChEMBL:CHEMBL6025 GenomeRNAi:10721 NextBio:40701
ArrayExpress:O75417 Bgee:O75417 CleanEx:HS_POLH CleanEx:HS_POLQ
Genevestigator:O75417 GermOnline:ENSG00000051341 Uniprot:O75417
Length = 2590
Score = 384 (140.2 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 133/465 (28%), Positives = 217/465 (46%)
Query: 88 CVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSF 147
C L ++QI MSAT+ N+ +++++ Y + RP E V V ++ S
Sbjct: 247 CQADLASSLSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESVKVGNSIYDS- 305
Query: 148 DGKSLTEIYADNLDYSLTGSGPDAV---LHLVQGNLMVLIFCSSKIACSNLA--LRLQFD 202
L + L + G V + N VL+FC SK C LA + +F
Sbjct: 306 -SMKLVREFEPMLQ--VKGDEDHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIAREFY 362
Query: 203 RFPGTKE--YKKQE-------KEDLIEALKEEN--DGKLSTNLEECILYGVAYHHADLTA 251
E K E +++L+E + + L + L++ + +GVA+HHA LT
Sbjct: 363 NLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTF 422
Query: 252 GERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAG 311
ER +IE A+ G ++++ TSTL++GVNLPA+RVIIR G + + YKQMVGRAG
Sbjct: 423 EERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGRAG 482
Query: 312 RTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMD-------PPTLVDLILEVVAA 364
R G+ GESI++CK + + +++ +P+ S + +++ ILE++
Sbjct: 483 RKGVDTVGESILICKNSEKS-KGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVG 541
Query: 365 NLCSSLEDVKTLIKHT-LFYQLKSPED--QQTFLETTLSEIVASLL-ASKGTMLTMNEA- 419
+ S+ +D+ T T L +K + Q+ L I A ++ + + EA
Sbjct: 542 GVASTSQDMHTYAACTFLAASMKEGKQGIQRNQESVQLGAIEACVMWLLENEFIQSTEAS 601
Query: 420 ----GHL-SLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRI 474
G + T + A + + LS L I++DL F L N LH+L+LV P+
Sbjct: 602 DGTEGKVYHPTHLGSATLSSSLSPADTLDIFADLQRAMKGFVLENDLHILYLVTPMF--- 658
Query: 475 PSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL 519
D + + + + K RVAE +GV E +A V GK+
Sbjct: 659 -EDWTTIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKV 702
Score = 217 (81.4 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 67/211 (31%), Positives = 108/211 (51%)
Query: 13 AEEFKFYLE---EYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRID 64
A+E K+YL+ + G+K G P+ R + I +CTIE+ + LI LI+EN++D
Sbjct: 150 AKEKKYYLQSLFQEVGIKVDGYMGSTSPS-RHFSSLDIAVCTIERANGLINRLIEENKMD 208
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYL-KKS--------------IQIFAMSATI 109
+G++V+DE HML + RG +LE +++K+ Y+ +KS +QI MSAT+
Sbjct: 209 LLGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATL 268
Query: 110 GNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGP 169
N+ +++++ Y + RP E V V ++ S L + L + G
Sbjct: 269 PNLELVASWLNAELYHTDFRPVPLLESVKVGNSIYDS--SMKLVREFEPMLQ--VKGD-E 323
Query: 170 DAVLHL----VQGNLMVLIFCSSKIACSNLA 196
D V+ L + N VL+FC SK C LA
Sbjct: 324 DHVVSLCYETICDNHSVLLFCPSKKWCEKLA 354
Score = 181 (68.8 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 78/323 (24%), Positives = 148/323 (45%)
Query: 353 TLVDLILEVVAANLCSSLEDVKTLIKHT-LFYQLKSPED--QQTFLETTLSEIVASLL-A 408
+++ ILE++ + S+ +D+ T T L +K + Q+ L I A ++
Sbjct: 530 SMIRAILEIIVGGVASTSQDMHTYAACTFLAASMKEGKQGIQRNQESVQLGAIEACVMWL 589
Query: 409 SKGTMLTMNEA-----GHL-SLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLH 462
+ + EA G + T + A + + LS L I++DL F L N LH
Sbjct: 590 LENEFIQSTEASDGTEGKVYHPTHLGSATLSSSLSPADTLDIFADLQRAMKGFVLENDLH 649
Query: 463 MLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL--K 520
+L+LV P+ D + + + + K RVAE +GV E +A V GK+ +
Sbjct: 650 ILYLVTPMF----EDWTTIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVAR 705
Query: 521 DEKK----ALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRF 576
E++ A+ RFF + +L D+++ +++ + YG +Q+ + +A + F
Sbjct: 706 TERQHRQMAIHKRFFTSLVLLDLISEVPLREINQKYGCNRGQIQSLQQSAAVYAGMITVF 765
Query: 577 CEELPELWCYKQLL-TDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIAR 635
L W +LL + + L + L L+ + + RAR L +G+ ++ +AR
Sbjct: 766 SNRLG--WHNMELLLSQFQKRLTFGIQRELCDLVRVSLLNAQRARVLYASGFHTVADLAR 823
Query: 636 ADAKEMVAKIRH-LPLRSARNLI 657
A+ E+ +++ +P +SAR +
Sbjct: 824 ANIVEVEVILKNAVPFKSARKAV 846
>UNIPROTKB|E1BMC0 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887
GO:GO:0043142 EMBL:DAAA02001581 EMBL:DAAA02001582 EMBL:DAAA02001583
IPI:IPI00687324 Ensembl:ENSBTAT00000002501 OMA:CFSDESI
Uniprot:E1BMC0
Length = 2728
Score = 315 (115.9 bits), Expect = 5.6e-24, P = 5.6e-24
Identities = 124/470 (26%), Positives = 213/470 (45%)
Query: 88 CVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSF 147
C + L ++QI MSAT+ N+ +++++ Y + RP E + + ++ S
Sbjct: 379 CQADLAIPLSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESIKIGNSIYDS- 437
Query: 148 DGKSLTEIYADNLDYSLTGSGPDAVLH-LVQGNLMVLIFCSSKIACSNLA--LRLQFDRF 204
L + L ++ + V+ N VL+FC SK C LA + +F
Sbjct: 438 -SMKLVREFQPMLQVKGDEDHVVSLCYETVRDNHSVLLFCPSKKWCEKLADIIAREFYSL 496
Query: 205 PGTKEYK-----------KQEKEDLIEA---LKEENDGKLSTNLEECILYGVAYHHADLT 250
E E++ L+E LK G L + L++ + +GVA+HHA LT
Sbjct: 497 HHQAEVTGLVRSSELPPVMLEQKGLLEVMDQLKRSPSG-LDSVLQKTVPWGVAFHHAGLT 555
Query: 251 AGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRA 310
ER +IE A+ G ++++ TSTL++GVNLPA+RVIIR + + YKQMVGRA
Sbjct: 556 FEERDIIEGAFRQGQIRVLAATSTLSSGVNLPARRVIIRTPIFSGRLLDILTYKQMVGRA 615
Query: 311 GRTGLQ---ESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMD-------PPTLVDLILE 360
GR G+ +GESI++CK + + +++ +P+ S + +++ ILE
Sbjct: 616 GRKGVDTVGNTGESILVCKNSEKS-KGITLLQGSLKPVHSCLQRHEGEEVTSSMIRAILE 674
Query: 361 VVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAG 420
++ + S+ +D++T T F E +Q + S L A + ++ + E
Sbjct: 675 IIVGGVASTSQDIQTYASCT-FLAASMKEGKQGIQKNKDS---VQLGAIEACVMWLLENE 730
Query: 421 HLSLTSIAKAAVQAGLSHDVCL---IIYSDLLH-NKLN-FCLLNSLHMLFLV---IPLEY 472
+ +T A + + H L + S L + L+ F L F++ + + Y
Sbjct: 731 FIQITE-ASDGTEGNVYHPTHLGSATLSSSLSPIDTLDIFADLQRAMKGFVLENDLHIVY 789
Query: 473 RI-P--SDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL 519
+ P D + + + + K RVAE +GV E +A V G L
Sbjct: 790 LVTPVFEDWTTIDWYRFFCLWEKLPASMKRVAELVGVEEGFLARCVKGNL 839
Score = 223 (83.6 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 67/211 (31%), Positives = 109/211 (51%)
Query: 13 AEEFKFYLE---EYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRID 64
A+E K+YL+ + G+K G PT R + I +CTIE+ + LI LI+EN++D
Sbjct: 282 AKEKKYYLQSLFQEVGIKVDGYMGSTSPT-RHFSSLDIAVCTIERANGLINRLIEENKMD 340
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYL-KKS--------------IQIFAMSATI 109
+G++V+DE HML + RG +LE +++K+ Y+ +KS +QI MSAT+
Sbjct: 341 LLGMVVVDELHMLGDSHRGYLLELLLTKICYITQKSASCQADLAIPLSNAVQIVGMSATL 400
Query: 110 GNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGP 169
N+ +++++ Y + RP E + + ++ S L + L + G
Sbjct: 401 PNLELVASWLNAELYHTDFRPVPLLESIKIGNSIYDS--SMKLVREFQPMLQ--VKGD-E 455
Query: 170 DAVLHL----VQGNLMVLIFCSSKIACSNLA 196
D V+ L V+ N VL+FC SK C LA
Sbjct: 456 DHVVSLCYETVRDNHSVLLFCPSKKWCEKLA 486
Score = 185 (70.2 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 77/323 (23%), Positives = 149/323 (46%)
Query: 353 TLVDLILEVVAANLCSSLEDVKTLIKHT-LFYQLKSPED--QQTFLETTLSEIVASLL-A 408
+++ ILE++ + S+ +D++T T L +K + Q+ L I A ++
Sbjct: 667 SMIRAILEIIVGGVASTSQDIQTYASCTFLAASMKEGKQGIQKNKDSVQLGAIEACVMWL 726
Query: 409 SKGTMLTMNEA-----GHL-SLTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLH 462
+ + + EA G++ T + A + + LS L I++DL F L N LH
Sbjct: 727 LENEFIQITEASDGTEGNVYHPTHLGSATLSSSLSPIDTLDIFADLQRAMKGFVLENDLH 786
Query: 463 MLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL--K 520
+++LV P + D + + + + K RVAE +GV E +A V G L +
Sbjct: 787 IVYLVTP----VFEDWTTIDWYRFFCLWEKLPASMKRVAELVGVEEGFLARCVKGNLVAR 842
Query: 521 DEKK----ALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRF 576
E++ A+ RFF + +L D+++ +++ + YG +Q+ + +A + F
Sbjct: 843 TERQHRQMAIHKRFFTSLVLLDLISEVPLKEINQKYGCNRGQIQSLQQSAAVYAGMITVF 902
Query: 577 CEELPELWCYKQLL-TDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIAR 635
L W +LL + + L + L L+ + + RAR L +G+ ++ +AR
Sbjct: 903 SNRLG--WHNMELLLSQFQKRLTFGIQRELCDLVRVSLLNAQRARFLYASGFLTVSDLAR 960
Query: 636 ADAKEMVAKIRHL-PLRSARNLI 657
AD E+ + +++ P +S R +
Sbjct: 961 ADVAEVESVLKNAAPFKSTRKAV 983
>POMBASE|SPAC9.03c [details] [associations]
symbol:brr2 "U5 snRNP complex subunit Brr2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000393 "spliceosomal
conformational changes to generate catalytic conformation"
evidence=IGI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 PomBase:SPAC9.03c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005681
GO:GO:0005682 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749 PIR:T39188
RefSeq:NP_593346.1 ProteinModelPortal:Q9UT24 IntAct:Q9UT24
STRING:Q9UT24 EnsemblFungi:SPAC9.03c.1 GeneID:2543676
KEGG:spo:SPAC9.03c KO:K12854 OMA:KWDVLSR OrthoDB:EOG4MD17F
NextBio:20804682 GO:GO:0046540 GO:GO:0004004 GO:GO:0000393
Uniprot:Q9UT24
Length = 2176
Score = 316 (116.3 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 126/487 (25%), Positives = 226/487 (46%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E + +K + + E G Q TK+Q+++ I + T EK +
Sbjct: 586 LVQEMVNNFSKRLTPYNIRVAELTG-DSQL--TKQQISETQIIVTTPEKWDIITRKANDL 642
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKS----IQIFAMSATIGNINALS 116
+ ++ + L++IDE H+L++ +RGP+LE +V+++ ++ +++ +SAT+ N ++
Sbjct: 643 SYVNLVRLVIIDEVHLLHD-ERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVA 701
Query: 117 TFI-----EGITYVENS-RPTK-HSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGP 169
+F+ +G+ Y +++ RP E++ + ++ F T + Y
Sbjct: 702 SFLHVDPKKGLFYFDSTYRPCPLKQEFIGITEKT--PFKRMQTT----NEACYE------ 749
Query: 170 DAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLI--EALKEEND 227
+ H G VLIF S+ + A R D+ + + D E L+ E D
Sbjct: 750 KVMQHA--GKNQVLIFVHSRKETAKTA-RFIRDKALEEETIGHLLRSDAASREILRAEAD 806
Query: 228 GKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVI 287
NL++ + YG A HHA + +R+ E+ + GT+Q++ T+TLA GVNLPA VI
Sbjct: 807 STSDENLKDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVI 866
Query: 288 IRDSYVGRDF------ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAG 341
I+ + V +S QM+GRAGR GE I++ + + S+MN
Sbjct: 867 IKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIIT-AHSELQYYLSLMNQ- 924
Query: 342 PEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFY--QLKSPE--------DQ 391
PI S L D + V+ S+ED + +T Y L+SP D
Sbjct: 925 QLPIESQF-MRRLADCLNAEVSLGTVRSIEDGVDWLGYTYLYVRMLRSPALYSVGPEYDD 983
Query: 392 QTFLETTLSEIV--ASLLASKGTMLTMN-EAGHLSLTSIAKAAVQAGLSHDVCLIIYSDL 448
+L ++++ A++L K +L N ++G L+ T + K A ++H+ + IY+ L
Sbjct: 984 DKYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLTATELGKVAASYYVTHN-SMAIYNRL 1042
Query: 449 LHNKLNF 455
L +F
Sbjct: 1043 LMQTTSF 1049
Score = 145 (56.1 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 77/394 (19%), Positives = 166/394 (42%)
Query: 42 IYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLY----LK 97
+ CT + L I ++ + DE +L GP+ E V+S++ Y L+
Sbjct: 1462 LIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQLLGGFY-GPLYEIVISRIRYMAVQLE 1520
Query: 98 KSIQIFAMSATIGNINALSTFIEGIT--YVENSRPTKHSEYVTVDKRVFQSFDGKSLTEI 155
K+I++ +S ++ N L ++ G + + N P +T+ QSF S+T
Sbjct: 1521 KNIRVVGLSVSVANARDLGEWL-GTSPQCIFNFSPKDRPNPLTIH---LQSF---SITHF 1573
Query: 156 YADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEK 215
+L +++ ++ + + ++F + LA L EY
Sbjct: 1574 --PSLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMADEDEYLFSLM 1631
Query: 216 EDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTL 275
E+ EA + D L +L+ +G+AY ++ ++ +++ Y G ++++ + +
Sbjct: 1632 EN--EAFNKVEDAALQQSLK----HGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDV 1685
Query: 276 AAGVNLPAQRVIIRDS--YVGRD--FIS--LNMYKQMVGRAGRTGLQESGESIMLCKTMQ 329
+ + VI+ + Y G++ +I ++ QM+G G E + I++ T +
Sbjct: 1686 IYSLKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTK 1745
Query: 330 DFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ--LKS 387
+ +N P P+ SH+ L D + ++ S +D + + Y+ + +
Sbjct: 1746 KEY-YKKFLNE-PLPMESHLQV-WLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVAN 1802
Query: 388 PE--DQQTFLETTLSEIVASLLASKGTMLTMNEA 419
P Q ++SE ++ L+ + TM ++EA
Sbjct: 1803 PAYYGLQDITHESVSEFLSDLVET--TMNDLSEA 1834
>FB|FBgn0263599 [details] [associations]
symbol:l(3)72Ab "lethal (3) 72Ab" species:7227 "Drosophila
melanogaster" [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005682 "U5 snRNP" evidence=ISS] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0007067 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR
GO:GO:0004004 GO:GO:0000381 EMBL:BT016121 EMBL:AY069270
RefSeq:NP_648818.3 UniGene:Dm.973 ProteinModelPortal:Q9VUV9
SMR:Q9VUV9 IntAct:Q9VUV9 STRING:Q9VUV9 PaxDb:Q9VUV9 PRIDE:Q9VUV9
EnsemblMetazoa:FBtr0075527 GeneID:39737 KEGG:dme:Dmel_CG5931
FlyBase:FBgn0036548 InParanoid:Q9VUV9 OrthoDB:EOG4S4MWW
PhylomeDB:Q9VUV9 GenomeRNAi:39737 NextBio:815125 Bgee:Q9VUV9
GermOnline:CG5931 Uniprot:Q9VUV9
Length = 2142
Score = 314 (115.6 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 108/384 (28%), Positives = 194/384 (50%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G + T+ Q+ + +CT EK + + + + L++IDE H+L++ +RGP+LE
Sbjct: 571 GDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHD-ERGPVLE 629
Query: 88 CVVSKVLY----LKKSIQIFAMSATIGNINALSTFI-----EGITYVENS-RPTK-HSEY 136
+V++ + ++ +++ +SAT+ N ++TF+ +G+ Y +NS RP +Y
Sbjct: 630 ALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQY 689
Query: 137 VTV-DKRVFQSFDGKSLTEI-YADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSN 194
+ V +K+ + F + + EI Y ++++ G + VL V + K A +
Sbjct: 690 IGVTEKKALKRF--QVMNEIVYEKTMEHA----GRNQVLVFVHSRKE-----TGKTARAV 738
Query: 195 LALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGER 254
+ L+ D G+ + K+ + E L+ E + +T L+E + YG A HHA +T +R
Sbjct: 739 RDMCLEQDTL-GS--FLKEGSASM-EVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDR 794
Query: 255 RLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV-----GRDFISLNMYK--QMV 307
L+E+ + +Q++ T+TLA GVNLPA VII+ + V GR ++ L+ QM+
Sbjct: 795 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGR-WVELSALDVLQML 853
Query: 308 GRAGRTGLQESGESIMLCKTMQDFLRFS-SMMNAGPEPISSHMDPPTLVDLILEVVAANL 366
GRAGR GE I++ T L+F S++N PI S L D++ +
Sbjct: 854 GRAGRPQYDTKGEGILI--TNHSELQFYLSLLNQ-QLPIESQFISK-LPDMLNAEIVLGT 909
Query: 367 CSSLEDVKTLIKHTLFY--QLKSP 388
L+D + +T Y L++P
Sbjct: 910 VQHLQDAVNWLGYTYLYIRMLRNP 933
Score = 223 (83.6 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 94/364 (25%), Positives = 166/364 (45%)
Query: 39 KKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYL-- 96
K + I T +K L Q + + L ++DE ++ + GP+LE V S++ Y+
Sbjct: 1420 KGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGG-EEGPVLEIVCSRMRYISS 1478
Query: 97 --KKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTE 154
+K I+I A+SA++ + ++ ++ G N+ H + + G ++T
Sbjct: 1479 QIEKQIRIVALSASLTDARDVAQWL-GCN--PNATFNFHPSVRPIPLELH--IQGYNVTH 1533
Query: 155 IYADNLDYSLTGSGP--DAVLHLVQGNLMVLIFCSSKIACSNLALR-LQF---DRFPGTK 208
N T S P +A+L + V++F SS+ A+ L + D P
Sbjct: 1534 ----NATRIATMSKPVYNAILKY-SAHKPVIVFVSSRKQARLTAIDVLTYAASDLQPN-- 1586
Query: 209 EYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQI 268
+ E+ED+ L+ D L+E + GVAY H L+A + RL+E+ + +G +Q+
Sbjct: 1587 RFFHAEEEDIKPFLERMTD----KTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQV 1642
Query: 269 ICCTSTLAAGVNLPAQRVIIRDS--YVGRDFISLNMYK-----QMVGRAGRTGLQESGES 321
+ L G+++ A VII D+ Y G++ S Y QM+GRA R +
Sbjct: 1643 AVISRDLCWGMSISAHLVIIMDTQFYNGKNH-SYEDYPITDVLQMIGRANRPNEDADAKC 1701
Query: 322 IMLCKTMQ-DFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHT 380
+++C++ + DF F +N P PI SH+D EVV + + +D + T
Sbjct: 1702 VLMCQSSKKDF--FKKFINE-PLPIESHLDHRMHDHFNAEVVTKTI-ENKQDAVDYLTWT 1757
Query: 381 LFYQ 384
Y+
Sbjct: 1758 FLYR 1761
Score = 39 (18.8 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 390 DQQT--FLETTLSEIVASLLASKGTMLTMNEAGHLSLTSI 427
D++T F T L I + + TMLT N+ +L+ I
Sbjct: 973 DRKTGHFQVTDLGRIASHYYLTHETMLTYNQLLKQTLSEI 1012
>TAIR|locus:2089144 [details] [associations]
symbol:RCK "ROCK-N-ROLLERS" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IMP] [GO:0051026 "chiasma assembly"
evidence=IMP] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007067
"mitosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0007131
GO:GO:0008026 GO:GO:0051026 KO:K15271 EMBL:AY822649 EMBL:AY960701
IPI:IPI00517826 RefSeq:NP_189410.2 UniGene:At.53523
ProteinModelPortal:Q5D892 SMR:Q5D892 STRING:Q5D892 PRIDE:Q5D892
EnsemblPlants:AT3G27730.1 GeneID:822395 KEGG:ath:AT3G27730
TAIR:At3g27730 HOGENOM:HOG000029933 InParanoid:Q5D892 OMA:IMTRRET
PhylomeDB:Q5D892 ProtClustDB:CLSN2699173 Genevestigator:Q5D892
Uniprot:Q5D892
Length = 1133
Score = 282 (104.3 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 102/351 (29%), Positives = 171/351 (48%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKK----------SIQIFAMSATIGNINA 114
+I L++IDE H+LN+P RG LE +VS++ L S+++ A+SATI NI
Sbjct: 158 DIALVLIDEVHLLNDP-RGAALEAIVSRLKILSSNHELRSSTLASVRLLAVSATIPNIED 216
Query: 115 LSTFIE----GIT-YVENSRPTKHSEYVTVDKRVFQSFDGKS--LTEIYADNLDYSLTGS 167
L+ +++ GI + E RP K + +VF K+ L E N Y
Sbjct: 217 LAEWLKVPTAGIKRFGEEMRPVK------LTTKVFGYAAAKNDFLFEKRLQNYIY----- 265
Query: 168 GPDAVLHLVQGNLMVLIFCSSKIACSNLALRL-QFDRFPGTKEYKKQEKEDLIEALKEEN 226
D ++ +G L+FCS++ A +L Q G + +E L E L+E +
Sbjct: 266 --DILMQYSKGK-SALVFCSTRKGAQEAAQKLAQTAMTYGYSNPFIKSREQL-ERLREAS 321
Query: 227 DGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRV 286
++ IL GV YH+ L +R L+E +L G +Q+IC T+TLA G+NLPA V
Sbjct: 322 PMCSDKQMQSYILQGVGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPAHTV 381
Query: 287 IIRDS-YVGRDFISLNMYK-----QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNA 340
+I+ + + ++ Y QM GRAGR ++G I++ + L + +++N
Sbjct: 382 VIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMVIIMTRRETVHL-YENLLN- 439
Query: 341 GPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLK-SPED 390
G E + S + P + L E+V + ++ + L+ ++K +PE+
Sbjct: 440 GCEVVESQLLPCLIEHLTAEIVQLTISDITRAIEWMKCSYLYVRMKKNPEN 490
Score = 64 (27.6 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 608 LMDLPGVKIGRARQLLNAGYSSLELIARADAKEM-VAKIRHLPL-RSARNLISAAKLHFI 665
L LPG+ + A+ L + G S E +A AD + + + R P + + +S+
Sbjct: 694 LKQLPGIGMVTAKALHSMGVRSFEALAEADPRRIEIVTGRKYPFGNTIKESLSSLPPKVE 753
Query: 666 TKMDKVEAMKNLIQNL 681
K+++V+ K I L
Sbjct: 754 IKVEEVDCQKQGISKL 769
>ASPGD|ASPL0000051297 [details] [associations]
symbol:AN10194 species:162425 "Emericella nidulans"
[GO:0000393 "spliceosomal conformational changes to generate
catalytic conformation" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:BN001307
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0046540 GO:GO:0000388 GO:GO:0008026
EnsemblFungi:CADANIAT00008099 OMA:AMNEACY Uniprot:C8VMF3
Length = 2208
Score = 297 (109.6 bits), Expect = 3.9e-22, P = 3.9e-22
Identities = 122/481 (25%), Positives = 225/481 (46%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E+ ++ + + + E G + Q TK+Q+ + + + T EK + +
Sbjct: 600 LVQEQVENFGRRLAPYGIKVAELTGDR-QL--TKQQIAETQVIVTTPEKFDVITRKASET 656
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKK----SIQIFAMSATIGNINALS 116
+ + LI+IDE H+L++ +RGP++E +VS+ + + +++I +SAT+ N ++
Sbjct: 657 SYTKLVRLIIIDEIHLLHD-ERGPVIESIVSRTIRQVEQTGDAVRIVGLSATLPNYRDVA 715
Query: 117 TFI-----EGITYVENS-RPTK-HSEYVTV-DKRVFQSFDGKSLTEIYADNLDYSLTGSG 168
+F+ +G+ + + S RP E++ V DK+ + K + +I + +
Sbjct: 716 SFLRVDPAKGLFHFDGSYRPCPLKQEFIGVTDKKPIKQL--KIMNDICYNKV-------- 765
Query: 169 PDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEA--LKEEN 226
+ H+ Q +LIF S+ + A L+ D+ + + K D L EE
Sbjct: 766 ---IEHVGQNRNQMLIFVHSRKETAKTAKYLR-DKALEMETIGQILKSDSASRAILAEEA 821
Query: 227 DGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRV 286
+ L++ + YG HHA L+ +R ++ + G++Q++ CT+TLA GVNLPA V
Sbjct: 822 ESVNDAALKDILPYGFGIHHAGLSLADRDSVQALFKDGSIQVLVCTATLAWGVNLPAHTV 881
Query: 287 IIRDSYVGR----DFISLNMYK--QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNA 340
II+ + V ++ L+ QM+GRAGR GE I++ T + + S+MN
Sbjct: 882 IIKGTQVYSPEKGSWVELSPQDVLQMLGRAGRPQYDTYGEGIIIT-TQAEIQYYLSLMNQ 940
Query: 341 GPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ-LKSPE--------DQ 391
PI S + ++ E+V N+ + E V L LF + L+SP +
Sbjct: 941 -QLPIESQLVSKLADNMNAEIVLGNIRTRDEGVDWLGYTYLFVRMLRSPGLYSVGADYEN 999
Query: 392 QTFLETTLSEIVAS---LLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDL 448
LE ++V S LL G + + G L T + + A + H+ ++ Y+
Sbjct: 1000 DDALEQKRVDLVHSAAVLLEKAGLVKYDKKTGRLQSTELGRIASHYYIGHN-SMLTYNQH 1058
Query: 449 L 449
L
Sbjct: 1059 L 1059
Score = 163 (62.4 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 86/397 (21%), Positives = 174/397 (43%)
Query: 59 QENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKV----LYLKKSIQIFAMSATIGNINA 114
+ + + L V DE HML G + E VVS++ L + ++I +S + N
Sbjct: 1498 KRKNVRAVELFVADELHMLGG-YGGYVYEVVVSRMHSIALQTESGMRIVGLSVPLSNARD 1556
Query: 115 LSTFIEGITY-VENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVL 173
+ +I + + N P H+ V ++ + QSF S+ +L ++ ++L
Sbjct: 1557 IGEWIGASKHTIYNFSP--HARPVPLELHI-QSF---SIPHF--PSLMLAMARPAYLSIL 1608
Query: 174 HLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTN 233
L + LIF ++ A+ L E + + IE L+
Sbjct: 1609 QL-SADKPALIFVPNRKQTRATAIDLLTACSIDDDEDRFLHAD--IEELQPLLGRVHERT 1665
Query: 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS-- 291
L E + +G+ Y+H L+ ++R++ Y G +Q++ + + +NL V++ +
Sbjct: 1666 LAESLSHGIGYYHEALSQTDKRIVSHLYNIGAIQVVIASRDVCWELNLTGHLVVVMGTQF 1725
Query: 292 YVGRD--FIS--LNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISS 347
+ GR+ +I ++ QM G+A R G + G +++ T++ + +N P+ S
Sbjct: 1726 FEGREHRYIDYPISEILQMFGKASRPGQDKVGRGVLMVPTVKREY-YKKFLNEAL-PVES 1783
Query: 348 HMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ--LKSPE-----D-QQTFLETTL 399
H+ + D + ++ +S +D + +T FY+ L +P D L T L
Sbjct: 1784 HLQL-YMHDAFVTEISQGTIASTQDSVDWLTYTYFYRRLLANPSFYGLTDISHEGLSTFL 1842
Query: 400 SEIVASLLA--SKGTMLTMNEAGHLSLTSIAKAAVQA 434
SE+V + L S+ ++ ++E S++ + A++ A
Sbjct: 1843 SELVENTLKELSEAKIIDLDEEDD-SVSPLNAASIGA 1878
>DICTYBASE|DDB_G0290389 [details] [associations]
symbol:ascc3 "activating signal cointegrator 1
complex subunit" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 dictyBase:DDB_G0290389 GO:GO:0005524
GO:GO:0006355 GO:GO:0006351 GenomeReviews:CM000154_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AAFI02000163 RefSeq:XP_635715.1
ProteinModelPortal:Q54G57 EnsemblProtists:DDB0233132 GeneID:8627633
KEGG:ddi:DDB_G0290389 InParanoid:Q54G57 KO:K15271
ProtClustDB:CLSZ2429672 Uniprot:Q54G57
Length = 2195
Score = 291 (107.5 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 123/450 (27%), Positives = 206/450 (45%)
Query: 15 EFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLI 69
++K +E G K G Y P L I T EK + + + + + L+
Sbjct: 1391 DWKVKFQEKLGKKLVELTGDYTPNMIALQNADIVTTTPEKWDGISRNWKNRSYVTSVSLL 1450
Query: 70 VIDEFHMLNEPQRGPILECVVSKVLYLKK----SIQIFAMSATIGNINALSTFIEGITYV 125
+IDE H++ E RGPILE +VS++ + K +I++ +S + N LS ++ GI V
Sbjct: 1451 IIDEIHLIGE-LRGPILEVIVSRMKLISKQTGVNIRVVGLSTAMANAIDLSEWM-GIDRV 1508
Query: 126 E--NSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPD-AVLHLVQGNLMV 182
N RP+ V ++ + Q F GK+ Y + T + P A + V
Sbjct: 1509 GLFNFRPSCRP--VPIEVHI-QGFQGKN----YCPRMQ---TMNKPSFAAIATYSPKKPV 1558
Query: 183 LIFCSSK----IACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECI 238
LIF SS+ + +L L D P K + E + +K+++ L +
Sbjct: 1559 LIFVSSRRQTRLTALDLISYLVVDNDPLQWIQKGFDIEPTLARVKDQH-------LRHTL 1611
Query: 239 LYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR- 295
+G+ HHA L G+R ++E + +QI+ TSTLA GVNLPA VII+ + + G+
Sbjct: 1612 SFGIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLAWGVNLPAHLVIIKGTEYFDGKT 1671
Query: 296 ----DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDP 351
DF L QM+GRAGR + G+++++ + +F P P+ SH+
Sbjct: 1672 KRYVDF-PLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKK--QFYKKFLYDPFPVESHLKD 1728
Query: 352 PTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ--LKSP-----EDQQT-FLETTLSEIV 403
L E+V+ + S + L+ +T F++ + SP ED + LS+++
Sbjct: 1729 FLHDHLNAEIVSGTIQSKQGAINYLV-NTFFFRRLVVSPSYYGLEDNSVEAVNQYLSDLL 1787
Query: 404 ASLLAS--KGTMLTMNEAGHLSLTSIAKAA 431
S LA + + + +NE + S+ K A
Sbjct: 1788 DSTLADLEQSSCIEINEYDEIIPMSMGKIA 1817
Score = 284 (105.0 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 113/402 (28%), Positives = 191/402 (47%)
Query: 10 AKAAEEFKFYLEEYAGV-----KGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRID 64
++ E+F L+ Y G+ G T+++L + I + T EK +
Sbjct: 551 SEMVEKFSNSLK-YLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVALTK 609
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLY----LKKSIQIFAMSATIGNINALSTFIE 120
+ LI+IDE H+L+E +RGP+LEC+V++ L ++ I+I +SAT+ N ++ FI
Sbjct: 610 LVRLIIIDEIHLLHE-ERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFIR 668
Query: 121 ----GITYVENS-RPTKHSE-YVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLH 174
G + ++S RP ++ ++ V ++ ++ + L+ SL
Sbjct: 669 APASGTHFFDSSYRPVPLTQNFIGVKDNQGIMVMKNNMNQLCYERLEKSLK--------- 719
Query: 175 LVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNL 234
+G+ V+IF S+ A L D K ++ +E A KE K S +
Sbjct: 720 --EGH-QVMIFVHSRKDTVKSAEILS-D-MAKEKHFRFSNEEPSFGAKKEFEKVK-SKEI 773
Query: 235 EECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV- 293
+G++ HHA L +R ++E+ + GT++++ CT+TLA GVNLPA VII+ + V
Sbjct: 774 RSLFQHGISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVY 833
Query: 294 ---GRDFISLNM--YKQMVGRAGRTGLQESGESIMLCKTMQDFL-RFSSMMNAGPEPISS 347
F+ L + Q+ GRAGR SGE +L T +D L + S+M++ PI S
Sbjct: 834 NAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLL--TSKDKLDHYLSLMSSSM-PIES 890
Query: 348 HMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ-LKSP 388
L E+V + + E V L LF + L++P
Sbjct: 891 KFITNLEDHLNAEIVLGTVSNVNEAVNWLSYTYLFIRMLQNP 932
Score = 40 (19.1 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 21/90 (23%), Positives = 39/90 (43%)
Query: 514 NVTGKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKMYG--IQNSHLQNFL-----NVT 566
N+T L++E+ L + Y++ D+H KV + +++ F N T
Sbjct: 1025 NIT--LREEESTELDKLAENQCYYELTVLDSHSKVKCLLQAFFSRANIDGFSLVSDSNYT 1082
Query: 567 SYFASKVYR--FCEELPELWC-YKQLLTDL 593
+S++ R F L + WC + + DL
Sbjct: 1083 VQNSSRILRGLFEISLKKGWCTVSKTILDL 1112
>UNIPROTKB|E2QVY0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005794
GO:GO:0006307 GO:GO:0008283 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 Ensembl:ENSCAFT00000005717
Uniprot:E2QVY0
Length = 1925
Score = 290 (107.1 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 109/390 (27%), Positives = 188/390 (48%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
+++K +EE G K G P + + K + + T EK + S N + ++ +
Sbjct: 1390 DDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTI 1449
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIEGITY 124
++IDE H+L E +RGP+LE +VS+ ++ +K ++I +S + N L+ ++
Sbjct: 1450 LIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIHQM 1508
Query: 125 -VENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVL 183
+ N RP+ V ++ + Q F G+ Y + S+ A+ VL
Sbjct: 1509 GLFNFRPSVRP--VPLEVHI-QGFPGQH----YCPRMA-SMNKPTFQAIRSHSPAK-PVL 1559
Query: 184 IFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKL-STNLEECILYGV 242
IF SS+ AL L F T+E KQ ++ E E G L +NL+ + +G+
Sbjct: 1560 IFVSSRRQTRLTALELI--AFLATEEDPKQWL-NMDEREMENIIGTLRDSNLKLTLAFGI 1616
Query: 243 AYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR----- 295
HHA L +R+ +EE ++ +Q++ TSTLA GVN PA VII+ + Y G+
Sbjct: 1617 GMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYV 1676
Query: 296 DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQ-DFLRFSSMMNAGPEPISSHMDPPTL 354
DF ++ QM+GRAGR + G++++L ++ DF + + P P+ S + L
Sbjct: 1677 DFPITDVL-QMMGRAGRPQFDDQGKAVILVHDIKKDF--YKKFLYE-PFPVESSL-LGVL 1731
Query: 355 VDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
D + +A +S +D I T F++
Sbjct: 1732 SDHLNAEIAGGTITSKQDAMDYITWTYFFR 1761
Score = 258 (95.9 bits), Expect = 5.5e-18, P = 5.5e-18
Identities = 98/378 (25%), Positives = 178/378 (47%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEI-GLIVIDEFHMLNEPQRGPIL 86
G +K ++ + + + T EK + + + + +I L+++DE H+L+E RGP+L
Sbjct: 566 GDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHE-DRGPVL 624
Query: 87 ECVVSKVLYLKKS----IQIFAMSATIGNINALSTFIE-----GITYVENS-RPTKHSEY 136
E +V++ L +S I+I +SAT+ N ++TF+ G+ Y + RP
Sbjct: 625 ESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVP---- 680
Query: 137 VTVDKRVFQSFDG-KSLTEIYA-DNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSN 194
+ Q+F G KS ++ +N+D ++VL V+ V++F ++ A
Sbjct: 681 ------LGQTFLGVKSANKVQQLNNMDEVCY----ESVLKQVKAGHQVMVFVHARNATVR 730
Query: 195 LALRLQFDRFPGTKE---YKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTA 251
A+ L +R + + + + + A K+ + + + E G + HHA +
Sbjct: 731 TAMSL-IERAKNSGQISCFLPSQGSEYGHAEKQVQKSR-NKQVRELFPDGFSIHHAGMLR 788
Query: 252 GERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--Q 305
+R L+E + G ++++ CT+TLA GVNLPA VII+ + Y + F+ L + Q
Sbjct: 789 QDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQ 848
Query: 306 MVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAAN 365
+ GRAGR GE I++ T D L + PI S +L D + +A
Sbjct: 849 IFGRAGRPQFDRFGEGIII--TTHDKLSHYLTLLTQQNPIESQF-LESLADNLNAEIALG 905
Query: 366 LCSSLEDVKTLIKHTLFY 383
+++E+ I +T Y
Sbjct: 906 TVTNVEEAVKWISYTYLY 923
>UNIPROTKB|E1BNG3 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9913 "Bos taurus" [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:DAAA02026160 EMBL:DAAA02026161
EMBL:DAAA02026162 EMBL:DAAA02026163 EMBL:DAAA02026164
EMBL:DAAA02026165 EMBL:DAAA02026166 EMBL:DAAA02026167
EMBL:DAAA02026168 EMBL:DAAA02026169 EMBL:DAAA02026170
EMBL:DAAA02026171 EMBL:DAAA02026172 EMBL:DAAA02026173
EMBL:DAAA02026174 EMBL:DAAA02026175 EMBL:DAAA02026176
EMBL:DAAA02026177 EMBL:DAAA02026178 EMBL:DAAA02026179
EMBL:DAAA02026180 EMBL:DAAA02026181 EMBL:DAAA02026182
EMBL:DAAA02026183 EMBL:DAAA02026184 EMBL:DAAA02026185
EMBL:DAAA02026186 EMBL:DAAA02026187 EMBL:DAAA02026188
EMBL:DAAA02026189 EMBL:DAAA02026190 EMBL:DAAA02026191
EMBL:DAAA02026192 EMBL:DAAA02026193 EMBL:DAAA02026194
EMBL:DAAA02026195 EMBL:DAAA02026196 EMBL:DAAA02026197
EMBL:DAAA02026198 EMBL:DAAA02026199 IPI:IPI00689177
RefSeq:NP_001193047.1 UniGene:Bt.26262 PRIDE:E1BNG3
Ensembl:ENSBTAT00000027294 GeneID:538416 KEGG:bta:538416 CTD:10973
GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC NextBio:20877349
GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 Uniprot:E1BNG3
Length = 2201
Score = 290 (107.1 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 109/391 (27%), Positives = 189/391 (48%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
+++K +EE G K G P + + K + + T EK + S N + ++ +
Sbjct: 1390 DDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTI 1449
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIEGITY 124
++IDE H+L E +RGP+LE +VS+ ++ +K ++I +S + N L+ ++ I
Sbjct: 1450 LIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLN-IRQ 1507
Query: 125 VE--NSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMV 182
+ N RP+ V ++ + Q F G+ Y + S+ A+ V
Sbjct: 1508 MGLFNFRPSVRP--VPLEVHI-QGFPGQH----YCPRMA-SMNKPTFQAIRSHSPAK-PV 1558
Query: 183 LIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKL-STNLEECILYG 241
LIF SS+ AL L F T+E KQ ++ E E G + +NL+ + +G
Sbjct: 1559 LIFVSSRRQTRLTALELI--AFLATEEDPKQWL-NMDEREMENIIGTIRDSNLKLTLAFG 1615
Query: 242 VAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR---- 295
+ HHA L +R+ +EE ++ +Q++ TSTLA GVN PA VII+ + Y G+
Sbjct: 1616 IGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRY 1675
Query: 296 -DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQ-DFLRFSSMMNAGPEPISSHMDPPT 353
DF ++ QM+GRAGR + G++++L ++ DF + + P P+ S +
Sbjct: 1676 VDFPITDVL-QMMGRAGRPQFDDQGKAVILVHDIKKDF--YKKFLYE-PFPVESSL-LGV 1730
Query: 354 LVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
L D + +A +S +D I T F++
Sbjct: 1731 LSDHLNAEIAGGTITSKQDAMDYITWTYFFR 1761
Score = 252 (93.8 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 97/378 (25%), Positives = 178/378 (47%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEI-GLIVIDEFHMLNEPQRGPIL 86
G +K ++ + + + T EK + + + + +I L+++DE H+L+E RGP+L
Sbjct: 566 GDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHE-DRGPVL 624
Query: 87 ECVVSKVLYLKKS----IQIFAMSATIGNINALSTFIE-----GITYVENS-RPTKHSEY 136
E +V++ L +S I+I +SAT+ N ++TF+ G+ + + RP
Sbjct: 625 ESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLFFFDGRFRPVP---- 680
Query: 137 VTVDKRVFQSFDG-KSLTEIYA-DNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSN 194
+ Q+F G KS ++ +N+D ++VL V+ V++F ++ A
Sbjct: 681 ------LGQTFLGIKSANKVQQLNNMDEVCY----ESVLKQVKAGHQVMVFVHARNATVR 730
Query: 195 LALRLQFDRFPGTKE---YKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTA 251
A+ L +R + + + + A K+ + + + E G + HHA +
Sbjct: 731 TAMSL-IERAKNNGQICYFLPTQGPEYGHAEKQVQKSR-NRQVRELFPDGFSIHHAGMLR 788
Query: 252 GERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--Q 305
+R L+E + G ++++ CT+TLA GVNLPA VII+ + Y + F+ L + Q
Sbjct: 789 QDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQ 848
Query: 306 MVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAAN 365
+ GRAGR + GE I++ T D L + PI S +L D + +A
Sbjct: 849 IFGRAGRPQFDKFGEGIII--TTHDKLSHYLSLLTQQNPIESQF-LESLADNLNAEIALG 905
Query: 366 LCSSLEDVKTLIKHTLFY 383
+++E+ I +T Y
Sbjct: 906 TVTNVEEAVKWISYTYLY 923
>UNIPROTKB|F6Y2F0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 GO:GO:0008026
Ensembl:ENSCAFT00000005717 EMBL:AAEX03008562 RefSeq:XP_854167.1
ProteinModelPortal:F6Y2F0 GeneID:475008 KEGG:cfa:475008 OMA:XAVYIAP
Uniprot:F6Y2F0
Length = 2202
Score = 290 (107.1 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 109/390 (27%), Positives = 188/390 (48%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
+++K +EE G K G P + + K + + T EK + S N + ++ +
Sbjct: 1390 DDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTI 1449
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIEGITY 124
++IDE H+L E +RGP+LE +VS+ ++ +K ++I +S + N L+ ++
Sbjct: 1450 LIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIHQM 1508
Query: 125 -VENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVL 183
+ N RP+ V ++ + Q F G+ Y + S+ A+ VL
Sbjct: 1509 GLFNFRPSVRP--VPLEVHI-QGFPGQH----YCPRMA-SMNKPTFQAIRSHSPAK-PVL 1559
Query: 184 IFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKL-STNLEECILYGV 242
IF SS+ AL L F T+E KQ ++ E E G L +NL+ + +G+
Sbjct: 1560 IFVSSRRQTRLTALELI--AFLATEEDPKQWL-NMDEREMENIIGTLRDSNLKLTLAFGI 1616
Query: 243 AYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR----- 295
HHA L +R+ +EE ++ +Q++ TSTLA GVN PA VII+ + Y G+
Sbjct: 1617 GMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYV 1676
Query: 296 DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQ-DFLRFSSMMNAGPEPISSHMDPPTL 354
DF ++ QM+GRAGR + G++++L ++ DF + + P P+ S + L
Sbjct: 1677 DFPITDVL-QMMGRAGRPQFDDQGKAVILVHDIKKDF--YKKFLYE-PFPVESSL-LGVL 1731
Query: 355 VDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
D + +A +S +D I T F++
Sbjct: 1732 SDHLNAEIAGGTITSKQDAMDYITWTYFFR 1761
Score = 258 (95.9 bits), Expect = 6.4e-18, P = 6.4e-18
Identities = 98/378 (25%), Positives = 178/378 (47%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEI-GLIVIDEFHMLNEPQRGPIL 86
G +K ++ + + + T EK + + + + +I L+++DE H+L+E RGP+L
Sbjct: 566 GDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHE-DRGPVL 624
Query: 87 ECVVSKVLYLKKS----IQIFAMSATIGNINALSTFIE-----GITYVENS-RPTKHSEY 136
E +V++ L +S I+I +SAT+ N ++TF+ G+ Y + RP
Sbjct: 625 ESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVP---- 680
Query: 137 VTVDKRVFQSFDG-KSLTEIYA-DNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSN 194
+ Q+F G KS ++ +N+D ++VL V+ V++F ++ A
Sbjct: 681 ------LGQTFLGVKSANKVQQLNNMDEVCY----ESVLKQVKAGHQVMVFVHARNATVR 730
Query: 195 LALRLQFDRFPGTKE---YKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTA 251
A+ L +R + + + + + A K+ + + + E G + HHA +
Sbjct: 731 TAMSL-IERAKNSGQISCFLPSQGSEYGHAEKQVQKSR-NKQVRELFPDGFSIHHAGMLR 788
Query: 252 GERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--Q 305
+R L+E + G ++++ CT+TLA GVNLPA VII+ + Y + F+ L + Q
Sbjct: 789 QDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQ 848
Query: 306 MVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAAN 365
+ GRAGR GE I++ T D L + PI S +L D + +A
Sbjct: 849 IFGRAGRPQFDRFGEGIII--TTHDKLSHYLTLLTQQNPIESQF-LESLADNLNAEIALG 905
Query: 366 LCSSLEDVKTLIKHTLFY 383
+++E+ I +T Y
Sbjct: 906 TVTNVEEAVKWISYTYLY 923
>UNIPROTKB|F1SU44 [details] [associations]
symbol:F1SU44 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000008903 OMA:NETIATY Uniprot:F1SU44
Length = 1027
Score = 285 (105.4 bits), Expect = 2.7e-21, P = 2.7e-21
Identities = 105/386 (27%), Positives = 190/386 (49%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E S K + + E + G + K +++ I +CT EK + +
Sbjct: 547 LVQEMVGSFGKRLATYGITVAE---LTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVL----YLKKSIQIFAMSATIGNINALS 116
+ LI++DE H+L++ RGP+LE +V++ + ++ +++ +SAT+ N ++
Sbjct: 604 TYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVA 662
Query: 117 TFI-----EGITYVENS-RPTKHSE-YVTV-DKRVFQSFDGKSLTEIYADNLDYSLTGSG 168
TF+ +G+ Y +NS RP + YV + +K+ + F + + EI + + + +G
Sbjct: 663 TFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRF--QIMNEIVYEKI---MEHAG 717
Query: 169 PDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDG 228
+ VL V + K A + + L+ D T +E E L+ E +
Sbjct: 718 KNQVLVFVHSRKE-----TGKTARAIRDMCLEKD----TLGLFLREGSASTEVLRTEAEQ 768
Query: 229 KLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVII 288
+ L++ + YG A HHA +T +R L+E+ + +Q++ T+TLA GVNLPA VII
Sbjct: 769 CKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVII 828
Query: 289 RDSYV-----GR--DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAG 341
+ + V GR + +L++ QM+GRAGR GE I++ + + + S++N
Sbjct: 829 KGTQVYSPEKGRWTELGALDIL-QMLGRAGRPQYDTKGEGILIT-SHGELQYYLSLLNQ- 885
Query: 342 PEPISSHMDPPTLVDLI-LEVVAANL 366
PI S M L D++ E+V N+
Sbjct: 886 QLPIESQM-VAKLPDMLNAEIVLGNV 910
>SGD|S000000974 [details] [associations]
symbol:BRR2 "RNA-dependent ATPase RNA helicase (DEIH box)"
species:4932 "Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000388 "spliceosome
conformational change to release U4 (or U4atac) and U1 (or U11)"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 SGD:S000000974
GO:GO:0005524 GO:GO:0005681 GO:GO:0005682 GO:GO:0003676
EMBL:BK006939 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104562 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
EMBL:U18922 KO:K12854 OrthoDB:EOG4MD17F GO:GO:0046540 GO:GO:0004004
PIR:S50675 RefSeq:NP_011099.1 PDB:3HIB PDB:3IM1 PDB:3IM2
PDBsum:3HIB PDBsum:3IM1 PDBsum:3IM2 ProteinModelPortal:P32639
SMR:P32639 DIP:DIP-850N IntAct:P32639 MINT:MINT-606933
STRING:P32639 PaxDb:P32639 EnsemblFungi:YER172C GeneID:856919
KEGG:sce:YER172C CYGD:YER172c OMA:RDTHESS EvolutionaryTrace:P32639
NextBio:983377 Genevestigator:P32639 GermOnline:YER172C
GO:GO:0000388 Uniprot:P32639
Length = 2163
Score = 302 (111.4 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 117/388 (30%), Positives = 190/388 (48%)
Query: 24 AGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRG 83
A + G +++Q+++ + + T EK + ++ + L++IDE H+L++ RG
Sbjct: 586 AELTGDSRLSRKQIDETQVLVSTPEKWDITTRNSNNLAIVELVRLLIIDEIHLLHD-DRG 644
Query: 84 PILECVVSKVLYLKKSIQ----IFAMSATIGNINALSTFI----EGITYVENS-RPTKHS 134
P+LE +V++ + K Q I +SAT+ N + F+ EG+ Y ++S RP S
Sbjct: 645 PVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLRVPKEGLFYFDSSFRPCPLS 704
Query: 135 E-YVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLV-QGNLMVLIFCSSKIAC 192
+ + + +R SL ++ A N D + VL + +GN +++F S+
Sbjct: 705 QQFCGIKER-------NSLKKLKAMN-DACY-----EKVLESINEGN-QIIVFVHSRKET 750
Query: 193 SNLALRLQFDRFPGTKEYKKQEKEDL--IEALKEENDGKLSTNLEECILYGVAYHHADLT 250
S A L+ ++F K K D + LK E L +L + I G+ HHA LT
Sbjct: 751 SRTATWLK-NKFAEENITHKLTKNDAGSKQILKTEAANVLDPSLRKLIESGIGTHHAGLT 809
Query: 251 AGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR--DSYVGR----DFISLNMYK 304
+R L E+ + G LQ++ CT+TLA GVNLPA VII+ D Y + +S
Sbjct: 810 RSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVL 869
Query: 305 QMVGRAGRTGLQESGESIMLCKTMQDFLRFS-SMMNAGPEPISSHMDPPTLVDLILEVVA 363
QM+GRAGR GE I++ T Q +++ S++N PI S + +L EVVA
Sbjct: 870 QMLGRAGRPRYDTFGEGIII--TDQSNVQYYLSVLNQ-QLPIESQFVSKLVDNLNAEVVA 926
Query: 364 ANL-CSSLEDVKTLIKHTLFY--QLKSP 388
N+ C + D + +T Y L SP
Sbjct: 927 GNIKCRN--DAVNWLAYTYLYVRMLASP 952
Score = 40 (19.1 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 376 LIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHLSLTS 426
L+ F +L+ P D Q L+ L ++V L+ +L+ N G+L+ T+
Sbjct: 1928 LLLQAYFSRLELPVDFQNDLKDILEKVVP-LINVVVDILSAN--GYLNATT 1975
Score = 40 (19.1 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 531 FHACILYDVLNFDNHQKVAKMYGIQNSHLQ 560
F I +D+LN + Q V + + + HL+
Sbjct: 1601 FSKAIEWDMLNVEEEQIVPYIEKLTDGHLR 1630
Score = 40 (19.1 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 450 HNKLNFCLLNSLHMLFLVIPLEYRIP---SDGIL 480
++ +N+ L++ L P+ Y++P SDG L
Sbjct: 933 NDAVNWLAYTYLYVRMLASPMLYKVPDISSDGQL 966
>CGD|CAL0001532 [details] [associations]
symbol:orf19.3098 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000388 "spliceosome conformational change to
release U4 (or U4atac) and U1 (or U11)" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001532 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 KO:K12854 GO:GO:0008026 EMBL:AACQ01000086
EMBL:AACQ01000085 RefSeq:XP_715407.1 RefSeq:XP_715477.1
ProteinModelPortal:Q5A0Z8 STRING:Q5A0Z8 GeneID:3642881
GeneID:3642903 KEGG:cal:CaO19.10610 KEGG:cal:CaO19.3098
Uniprot:Q5A0Z8
Length = 1987
Score = 288 (106.4 bits), Expect = 3.2e-21, P = 3.2e-21
Identities = 106/374 (28%), Positives = 192/374 (51%)
Query: 33 TKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSK 92
+K+Q+ + I + T EK + + + + L++IDE H+L++ +RGP+LE +VS+
Sbjct: 469 SKQQIAETQIIVTTPEKWDIITRK--DPSYVKLVKLMIIDEIHLLHD-ERGPVLESLVSR 525
Query: 93 VLYLKKS----IQIFAMSATIGNINALSTFI----EGITYVENS-RPTKHSE-YVTVDKR 142
+ ++ I+I +SAT+ N ++ FI EG+ Y + S RP + Y+ V ++
Sbjct: 526 AIRKSETTGSDIRIVGLSATLPNYADVAKFIRAKPEGLFYFDASYRPCPLEQVYIGVKEQ 585
Query: 143 VFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFD 202
K++ I A N + D + +Q ++IF S+ A L +
Sbjct: 586 -------KAIKRIAAMN------EACYDRMHQSLQDRHQLIIFVHSRKETFTTAKYLM-E 631
Query: 203 RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYL 262
+ + E+E + E LK+E + + L+E I G HHA LT +R ++E+ +
Sbjct: 632 KL----DIDIVEQEGVKEILKQEGESMSNPKLKEVIPRGFGIHHAGLTKKDRGVVEDLFA 687
Query: 263 AGTLQIICCTSTLAAGVNLPAQRVIIR--DSYVGRD--FISLNMYK--QMVGRAGRTGLQ 316
G L+++ T+TLA GVNLPA VII+ ++Y ++ L+ QM+GRAGR
Sbjct: 688 QGYLRVLVSTATLAWGVNLPAHTVIIKGTETYSPESGAWVQLSPQDILQMLGRAGRPRYD 747
Query: 317 ESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTL 376
++GE I++ T QD +++ + PI S + + ++ E+VA ++ + E ++ L
Sbjct: 748 KNGEGIII--TSQDEVQYYLAILNQQLPIESQLIHKLVDNINAEIVAGSITTIEEGIEWL 805
Query: 377 IKHTLFY--QLKSP 388
+T F+ L+SP
Sbjct: 806 T-YTYFFVRMLQSP 818
>UNIPROTKB|Q8N3C0 [details] [associations]
symbol:ASCC3 "Activating signal cointegrator 1 complex
subunit 3" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006307 "DNA dealkylation
involved in DNA repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0006307
GO:GO:0008283 EMBL:CH471051 GO:GO:0006351 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:10973
KO:K01529 OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AL834463 EMBL:AK315197
EMBL:AL591585 EMBL:AL121965 EMBL:AL133338 EMBL:AL356122 EMBL:Z86062
EMBL:BC050681 EMBL:BC125211 EMBL:BC125212 EMBL:BC026066
EMBL:AY013288 EMBL:AJ223948 IPI:IPI00430472 RefSeq:NP_006819.2
RefSeq:NP_071374.1 UniGene:Hs.486031 ProteinModelPortal:Q8N3C0
SMR:Q8N3C0 IntAct:Q8N3C0 MINT:MINT-1183138 STRING:Q8N3C0
PhosphoSite:Q8N3C0 DMDM:158518649 PaxDb:Q8N3C0 PRIDE:Q8N3C0
DNASU:10973 Ensembl:ENST00000369143 Ensembl:ENST00000369162
Ensembl:ENST00000522650 GeneID:10973 KEGG:hsa:10973 UCSC:uc003pqk.3
GeneCards:GC06M100956 H-InvDB:HIX0021958 HGNC:HGNC:18697
HPA:HPA031608 HPA:HPA031609 HPA:HPA031610 MIM:614217
neXtProt:NX_Q8N3C0 PharmGKB:PA134890913 eggNOG:COG1204
HOGENOM:HOG000152625 HOVERGEN:HBG051896 InParanoid:Q8N3C0
PhylomeDB:Q8N3C0 ChiTaRS:ASCC3 GenomeRNAi:10973 NextBio:41694
ArrayExpress:Q8N3C0 Bgee:Q8N3C0 CleanEx:HS_ASCC3
Genevestigator:Q8N3C0 GermOnline:ENSG00000112249 Uniprot:Q8N3C0
Length = 2202
Score = 286 (105.7 bits), Expect = 6.0e-21, P = 6.0e-21
Identities = 109/397 (27%), Positives = 191/397 (48%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
+++K +EE G K G P + + K + + T EK + S N + ++ +
Sbjct: 1390 DDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTI 1449
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIEGITY 124
++IDE H+L E +RGP+LE +VS+ ++ +K ++I +S + N L+ ++ I
Sbjct: 1450 LIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLN-IKQ 1507
Query: 125 VE--NSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMV 182
+ N RP+ V ++ + Q F G+ Y + S+ A+ V
Sbjct: 1508 MGLFNFRPSVRP--VPLEVHI-QGFPGQH----YCPRMA-SMNKPAFQAIRSHSPAK-PV 1558
Query: 183 LIFCSSKIACSNLALRLQFDRFPGTKEYKKQ-------EKEDLIEALKEENDGKLSTNLE 235
LIF SS+ AL L F T+E KQ E E++I +++ +NL+
Sbjct: 1559 LIFVSSRRQTRLTALELI--AFLATEEDPKQWLNMDEREMENIIATVRD-------SNLK 1609
Query: 236 ECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YV 293
+ +G+ HHA L +R+ +EE ++ +Q++ TSTLA GVN PA VII+ + Y
Sbjct: 1610 LTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYD 1669
Query: 294 GR-----DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQ-DFLRFSSMMNAGPEPISS 347
G+ DF ++ QM+GRAGR + G++++L ++ DF + + P P+ S
Sbjct: 1670 GKTRRYVDFPITDVL-QMMGRAGRPQFDDQGKAVILVHDIKKDF--YKKFLYE-PFPVES 1725
Query: 348 HMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
+ L D + +A +S +D I T F++
Sbjct: 1726 SL-LGVLSDHLNAEIAGGTITSKQDALDYITWTYFFR 1761
Score = 248 (92.4 bits), Expect = 7.7e-17, P = 7.7e-17
Identities = 96/372 (25%), Positives = 173/372 (46%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEI-GLIVIDEFHMLNEPQRGPIL 86
G +K ++ + + + T EK + + + + +I L+++DE H+L+E RGP+L
Sbjct: 566 GDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLILDEVHLLHE-DRGPVL 624
Query: 87 ECVVSKVLYLKKS----IQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKR 142
E +V++ L +S I+I +SAT+ N ++TF+ Y+ V +
Sbjct: 625 ESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVPLG-- 682
Query: 143 VFQSFDG-KSLTEIYA-DNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQ 200
Q+F G K ++ +N+D + VL V+ V++F ++ A A+ L
Sbjct: 683 --QTFLGIKCANKMQQLNNMDEVCY----ENVLKQVKAGHQVMVFVHARNATVRTAMSL- 735
Query: 201 FDRFPGTKE---YKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257
+R + + D + A K+ + + + E G + HHA + +R L+
Sbjct: 736 IERAKNCGHIPFFFPTQGHDYVLAEKQVQRSR-NKQVRELFPDGFSIHHAGMLRQDRNLV 794
Query: 258 EEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--QMVGRAG 311
E + G ++++ CT+TLA GVNLPA VII+ + Y + F+ L + Q+ GRAG
Sbjct: 795 ENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAG 854
Query: 312 RTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLE 371
R + GE I++ T D L + PI S +L D + +A +++E
Sbjct: 855 RPQFDKFGEGIII--TTHDKLSHYLTLLTQRNPIESQF-LESLADNLNAEIALGTVTNVE 911
Query: 372 DVKTLIKHTLFY 383
+ I +T Y
Sbjct: 912 EAVKWISYTYLY 923
>CGD|CAL0003134 [details] [associations]
symbol:orf19.3980 species:5476 "Candida albicans" [GO:0042788
"polysomal ribosome" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 CGD:CAL0003134 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AACQ01000012 EMBL:AACQ01000011
RefSeq:XP_721889.1 RefSeq:XP_722050.1 ProteinModelPortal:Q5AK41
STRING:Q5AK41 GeneID:3636313 GeneID:3636419 KEGG:cal:CaO19.11463
KEGG:cal:CaO19.3980 Uniprot:Q5AK41
Length = 1929
Score = 283 (104.7 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 102/371 (27%), Positives = 180/371 (48%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENR-IDEIGLIVIDEFHMLNEPQRGPIL 86
G T++++ I + T EK + ++ + ++ L++IDE H+L+E RG ++
Sbjct: 353 GDMQLTRQEIINTQIIVTTPEKWDVVTRKSTGDSELVAKVKLLIIDEVHLLHE-DRGSVI 411
Query: 87 ECVVSKVLYLKKS----IQIFAMSATIGNINALSTFIE-----GITYVENS-RPTKHSEY 136
E +V++ L +S I++ +SAT+ N ++ F+ G+ Y + S RP
Sbjct: 412 ETLVARTLRQVESTQSMIRVVGLSATLPNYMDVADFLGVNRSVGMFYFDQSFRP------ 465
Query: 137 VTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLA 196
V + +++ GK+ +++ +N+D D ++ QG L V++F S+ N A
Sbjct: 466 VPLQQQIL-GVRGKAGSKLARENIDKVSYEKLAD---YINQG-LQVMVFVHSRKDTVNTA 520
Query: 197 ---LRLQFDRFPGTKEYKKQEKEDLIEALKEENDGK-LSTNLEECILYGVAYHHADLTAG 252
+R+ + G E + D E K E K S L+E ++G HHA +
Sbjct: 521 RTFIRMAVEY--GESEIFNCSEADSYEKYKREASNKNRSKELKELFVHGFGVHHAGMLRS 578
Query: 253 ERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR-----DSYVGRDFISLNMYK--Q 305
+R L E+ + +G ++++CCT+TLA GVNLPA VI++ DS G F+ L + Q
Sbjct: 579 DRNLTEKMFESGAIKVLCCTATLAWGVNLPAAVVIVKGTQVYDSKAG-GFVDLGISDVIQ 637
Query: 306 MVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAAN 365
+ GRAGR ++ G I LC T + S++ PI S + +L E+
Sbjct: 638 IFGRAGRPQYEKFGTGI-LCTTSDKLDHYVSLLTQ-QHPIESKFGDKLIDNLNAEISLGT 695
Query: 366 LCSSLEDVKTL 376
+ + E V+ L
Sbjct: 696 VTNVEEAVQWL 706
Score = 253 (94.1 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 100/378 (26%), Positives = 175/378 (46%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G PT +++ + I I T EK + + + ++ L+++DE H+L RGPILE
Sbjct: 1196 GDSLPTIQEVKEADIIITTPEKFDGISRNWQTRKFVQQVSLVIMDEIHLLAS-DRGPILE 1254
Query: 88 CVVSKVLYL----KKSIQIFAMSATIGNINALSTFI---EGI-TYVENSRPTKHSEYVTV 139
+VS++ Y+ KK I++ MS + N ++ ++ G+ + ++ RP Y+
Sbjct: 1255 MIVSRMNYISSQTKKPIRLLGMSTAVSNAFDMAGWLGVKNGLFNFPQSVRPVPLQMYI-- 1312
Query: 140 DKRVFQSFDGKSLTEIYADNLDYS--LTGSGPDAVLHLVQG--NLMVLIFCSSKIACSNL 195
DG + +NL + + A + + Q N VLIF +S+
Sbjct: 1313 --------DG------FPENLAFCPLMKTMNKPAFMAIKQHSPNKPVLIFVASRRQTRLT 1358
Query: 196 ALRLQF--DRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGE 253
AL L + + K ++L + L+ D L +L+ +G+ HHA L +
Sbjct: 1359 ALDLIHLCGMESNPRRFLKISDDELQDILENVKDDTLRLSLQ----FGMGLHHAGLVESD 1414
Query: 254 RRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR-----DSYVG--RDFISLNMYKQM 306
R++ + + G +QI+ TSTLA GVNLPA VII+ D+ + RD + L QM
Sbjct: 1415 RQISHKLFEQGKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEAYRD-MDLTDILQM 1473
Query: 307 VGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANL 366
+GRAGR SG +I+ K + + +N G P+ S + L + I ++A
Sbjct: 1474 MGRAGRPAYDTSGIAIVYTKESKKVF-YKHFLNLG-FPVESSLHK-VLDNHIGAEISAGT 1530
Query: 367 CSSLEDVKTLIKHTLFYQ 384
++ ++ + T Y+
Sbjct: 1531 ITTRQEAMDFLTWTFLYR 1548
>DICTYBASE|DDB_G0270042 [details] [associations]
symbol:ascc3l "U5 small nuclear ribonucleoprotein 200
kDa helicase" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 dictyBase:DDB_G0270042 GO:GO:0005524
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 KO:K12854 OMA:KWDVLSR GO:GO:0008026
RefSeq:XP_646493.1 ProteinModelPortal:Q55CI8 STRING:Q55CI8
EnsemblProtists:DDB0233131 GeneID:8617455 KEGG:ddi:DDB_G0270042
InParanoid:Q55CI8 ProtClustDB:CLSZ2431432 Uniprot:Q55CI8
Length = 2237
Score = 299 (110.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 125/521 (23%), Positives = 240/521 (46%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E + +K + + + E G + T +Q+++ I + T EK +
Sbjct: 619 LVQEMVGNFSKRLKSYGIVVNELTGDQSL---TNKQISETQIIVTTPEKWDIITRKSGDR 675
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQ----IFAMSATIGNINALS 116
+ LI+IDE H+L++ +RGP+LEC+V++ L + +S Q + +SAT+ N ++
Sbjct: 676 AYTQLVKLIIIDEIHLLHD-ERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNYEDVA 734
Query: 117 TFI----EGITYVENS-RPTK-HSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPD 170
TF+ +G+ Y ++S RP +Y+ + R + ++ N D + T
Sbjct: 735 TFLRVEPDGVFYFDSSYRPIPLEQQYIGISDR--------GIKQLQRCN-DITFT----- 780
Query: 171 AVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKL 230
V V G+ +LIF S+ + L+ DR + + ++ + K
Sbjct: 781 KVSERV-GDHQILIFVHSRRETAKTGKDLR-DRAVEDQSIDRYIRDPASREILRATASKQ 838
Query: 231 STN--LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVII 288
N L++ + YG+ HHA L+ +R L+E+ + +Q++ T+TLA GVNLPA VII
Sbjct: 839 IQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLISTATLAWGVNLPAHTVII 898
Query: 289 RDSYV---GRDFISLNMYK--QMVGRAGRTGLQESGESIMLCKTMQDFLRFS-SMMNAGP 342
+ + + + + L+ QM+GRAGR + GE I++ T Q L+F S++N
Sbjct: 899 KGTQIYNPEKGWCELSPLDVTQMLGRAGRPPFDKEGEGIII--TSQHELQFYLSLLNTQL 956
Query: 343 EPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFY--QLKSPE---------DQ 391
I S +L E+V ++ ++ D + +T Y +++P ++
Sbjct: 957 S-IESQFISRIADNLNAEIVLGSI-QTVRDAVNWLGYTYLYICMIRNPPLYEISYDDFEK 1014
Query: 392 QTFLETTLSEIV--ASLLASKGTMLTMN-EAGHLSLTSIAKAAVQAGLSHDVCLIIYSDL 448
LE ++V A+ + K +++ + ++G L T + K A +++ + IY +
Sbjct: 1015 DPLLEQRRLDLVHSAATILEKNSLIKYDRKSGKLQSTELGKVASHYYITNS-SMSIYQE- 1072
Query: 449 LHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDR 489
H K + + L + L + + +G K+ +R
Sbjct: 1073 -HLKPSMSDIELLRVFSLSSEFKNVVVREGEKFELEKLLER 1112
Score = 203 (76.5 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 92/370 (24%), Positives = 169/370 (45%)
Query: 37 LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYL 96
L++ +I + EK L Q + I L+++DE H++ + GP +E VVS++ Y+
Sbjct: 1491 LDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGG-EYGPTMEIVVSRMRYI 1549
Query: 97 K----KSIQIFAMSATIGNINALSTFIEGIT------YVENSRPTKHSEYVTVDKRVFQS 146
++++ A+S++I N L +I G T + N RP EY + F
Sbjct: 1550 STQTGNALRVIALSSSIANARDLVLWI-GATPQTCYNFHPNVRPIP-VEY-QIQGFEFPH 1606
Query: 147 FDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPG 206
F+ + L + + +++ + L S +A +A F+
Sbjct: 1607 FNARMLAMTKPTVYEVA-KNKNQQSIVFVPTRKL------SRSLAADIIANVSSFEDTL- 1658
Query: 207 TKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTL 266
TK Y E+ L L E+ D S L++ + GVA++H LT ERR++E + +G++
Sbjct: 1659 TKPYLVCEEHVLTPYL-EDVD---SFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSI 1714
Query: 267 QIICCTSTLAAGV-NLPAQRVIIRDS--YVGRD--FIS--LNMYKQMVGRAGRT---GL- 315
+++ T ++A + N+ AQ V+I + Y G+D +I +N QM+GRAG+ G+
Sbjct: 1715 RVLIATHSVAWLLDNVFAQLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGVI 1774
Query: 316 -QESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVK 374
+ + ++LC + + M P P+ SH+D L D + + +D
Sbjct: 1775 SNKVAKVLLLCHAPKK--EYYKMFLNEPLPVESHLDH-CLHDQFNSEIVTKTITKKQDAL 1831
Query: 375 TLIKHTLFYQ 384
+ T Y+
Sbjct: 1832 DYLTWTFLYR 1841
Score = 38 (18.4 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 26 VKGQYPPTKRQLNKKS 41
VK Q P K+ N+KS
Sbjct: 92 VKNQNPLEKKSTNRKS 107
>ZFIN|ZDB-GENE-081105-64 [details] [associations]
symbol:si:ch211-251j10.5 "si:ch211-251j10.5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 ZFIN:ZDB-GENE-081105-64 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
HOVERGEN:HBG051896 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 GO:GO:0008026 EMBL:BX640472
EMBL:CR376723 IPI:IPI00608684 RefSeq:NP_001116729.1
UniGene:Dr.32574 SMR:B0S754 Ensembl:ENSDART00000109885
GeneID:799690 KEGG:dre:799690 NextBio:20933935 Uniprot:B0S754
Length = 2134
Score = 297 (109.6 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 110/410 (26%), Positives = 200/410 (48%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E S K + + E + G + K ++N I +CT EK + +
Sbjct: 544 LVQEMVGSFGKRLASYGIIVSE---LTGDHQLCKEEINATQIIVCTPEKWDIITRKGGER 600
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVL----YLKKSIQIFAMSATIGNINALS 116
+ LI+IDE H+L++ RGP+LE ++++ + ++ +++ +SAT+ N ++
Sbjct: 601 TYTQLVRLIIIDEIHLLHD-DRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVA 659
Query: 117 TFI-----EGITYVENS-RPTKHSE-YVTV-DKRVFQSFDGKSLTEIYADNLDYSLTGSG 168
T + +G+ Y +NS RP + YV + +K+ + F + + EI + + + +G
Sbjct: 660 TCLRVDPSKGLFYFDNSFRPVPLEQTYVGITEKKAIKRF--QIMNEIVYEKI---MEHAG 714
Query: 169 PDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDG 228
+ VL V + K A + + L+ D T +E E L+ E +
Sbjct: 715 KNQVLVFVHSRKE-----TGKTARAIRDMCLEKD----TLGLFLREGSASTEVLRTEAEQ 765
Query: 229 KLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVII 288
+ L++ + YG A HHA +T +R L+E+ + +Q++ T+TLA GVNLPA VII
Sbjct: 766 CKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVII 825
Query: 289 RDSYV-----GR--DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAG 341
+ + V GR + +L++ QM+GRAGR GE I++ + + + S++N
Sbjct: 826 KGTQVYSPEKGRWTELGALDIL-QMLGRAGRPQYDSKGEGILIT-SHGELQYYLSLLNQ- 882
Query: 342 PEPISSHMDPPTLVDLI-LEVVAANLCSSLEDVKTLIKHTLFY--QLKSP 388
PI S M L D++ E+V N+ + +D + +T Y L++P
Sbjct: 883 QLPIESQM-VGKLADMLNAEIVLGNV-QNAKDAVNWLGYTYLYVRMLRNP 930
Score = 231 (86.4 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 92/376 (24%), Positives = 172/376 (45%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G+ + L K I + T +K L Q + + L +IDE H++ GP+LE
Sbjct: 1406 GETSTDLKLLGKGDIIVSTPDKWDILSRRWKQRKNVQNVSLFIIDEVHLIGG-DNGPVLE 1464
Query: 88 CVVSKVLYL----KKSIQIFAMSATIGNINALSTFIE-GITYVENSRPTKHSEYVTVDKR 142
+ S++ Y+ ++ I+I A+S+++ N ++ ++ T N P V ++
Sbjct: 1465 VICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSTTATFNFHPNVRP--VPLELH 1522
Query: 143 VFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLM---VLIFCSSKIACSNLALR- 198
+ Q F+ S T+ L+ + P V H + + VL+F S+ A+
Sbjct: 1523 I-QGFN-VSHTQTRL------LSMAKP--VYHAIMKHSPSKPVLVFVPSRRQTRLTAIDI 1572
Query: 199 LQF---DRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERR 255
L F D P + + ++DL+ ++ +D L+E + GV Y H L+ ERR
Sbjct: 1573 LTFCAADVVP--QRFLHSTEKDLVPFMENLSD----VTLKETLSNGVGYLHEGLSPTERR 1626
Query: 256 LIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--QMVGR 309
++E + +G +Q++ + +L G N+ A VI+ D+ Y G+ ++ +Y QMVG+
Sbjct: 1627 IVEHLFTSGAIQVVVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIYDVLQMVGK 1686
Query: 310 AGRTGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCS 368
A R + G +++C+ + +DF F + P P+ SH+D L D +
Sbjct: 1687 ANRPLQDDEGRCVIMCQGSKKDF--FKKFLYE-PLPVESHLDH-CLHDHFNAEIVTKTVE 1742
Query: 369 SLEDVKTLIKHTLFYQ 384
+ +D + T Y+
Sbjct: 1743 NKQDAVDYLTWTFLYR 1758
Score = 39 (18.8 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 564 NVTSYFASKVYRFCEE 579
N T YF S Y C++
Sbjct: 2099 NYTLYFMSDAYMGCDQ 2114
Score = 37 (18.1 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 588 QLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARA-DAKEMV 642
+L+ + Q L + ++ MD+ + +G Y+++EL + + +AK V
Sbjct: 1783 ELVENTLQDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKV 1838
>UNIPROTKB|F1NTD6 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006307 "DNA dealkylation involved in
DNA repair" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 KO:K01529 GO:GO:0043140
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
EMBL:AADN02002229 EMBL:AADN02002230 EMBL:AADN02002231
EMBL:AADN02002232 EMBL:AADN02002233 EMBL:AADN02002234
IPI:IPI00590520 RefSeq:XP_419816.1 UniGene:Gga.31679
ProteinModelPortal:F1NTD6 PRIDE:F1NTD6 GeneID:421790
KEGG:gga:421790 Uniprot:F1NTD6
Length = 2211
Score = 282 (104.3 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 102/394 (25%), Positives = 192/394 (48%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
E++K +EE G K G P R + + + + T EK + S + + ++ +
Sbjct: 1399 EDWKVRIEEKLGKKVVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVSI 1458
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIEGITY 124
++IDE H+L + +RGP+LE +VS+ ++ +K +++ +S + N L+ ++ I
Sbjct: 1459 LIIDEIHLLGD-ERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDLADWLN-INQ 1516
Query: 125 VE--NSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMV 182
+ N RP+ V ++ + Q F G+ Y + + A+ V
Sbjct: 1517 MGLFNFRPSVRP--VPLEVHI-QGFPGQH----YCPRMA-RMNKPAFQAIRSHSPAK-PV 1567
Query: 183 LIFCSSK----IACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECI 238
LIF SS+ + +L L + P K++ K ++ ++ + + D +NL+ +
Sbjct: 1568 LIFVSSRRQTRLTSLDLIAFLATEDDP--KQWLKMDEREMNDIIGTVRD----SNLKLTL 1621
Query: 239 LYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVG-- 294
+G+ HHA L +R+ +EE ++ +Q++ TSTLA GVN PA VI++ + Y G
Sbjct: 1622 AFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKT 1681
Query: 295 RDFIS--LNMYKQMVGRAGRTGLQESGESIMLCKTMQ-DFLRFSSMMNAGPEPI-SSHMD 350
R ++ + QM+GRAGR + G++++L ++ DF + + P P+ SS +D
Sbjct: 1682 RRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDF--YKKFLYE-PFPVESSLLD 1738
Query: 351 PPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
L D + +AA +S +D I T F++
Sbjct: 1739 --VLADHLNAEIAAGTITSKQDAMDYITWTYFFR 1770
Score = 255 (94.8 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 92/368 (25%), Positives = 172/368 (46%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDE-IGLIVIDEFHMLNEPQRGPIL 86
G +K ++ + + + T EK + + + + + + L+++DE H+L+E RGP+L
Sbjct: 575 GDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQLVKLLILDEVHLLHE-DRGPVL 633
Query: 87 ECVVSKVLYLKKS----IQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKR 142
E +V++ L +S I+I +SAT+ N ++TF+ Y+ S + V
Sbjct: 634 ESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYI--GLFYFDSRFRPVP-- 689
Query: 143 VFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGN-LMVLIFCSSKIACSNLALRLQF 201
+ Q+F G T L++ + + ++ G+ +MV + + + +ALR +
Sbjct: 690 LGQTFIGIKTTN-KVQQLNHMDEVCYENVLKQIMAGHQVMVFVHARNATVRTAMALREKA 748
Query: 202 DRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAY 261
+ + D +A K+ + + L E G + HHA + +R L+E +
Sbjct: 749 KNNGHICHFLSPQGSDYGQAEKQVQRSR-NKQLRELFPDGFSIHHAGMLRQDRSLVENLF 807
Query: 262 LAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--QMVGRAGRTGL 315
G ++++ CT+TLA GVNLPA V+I+ + Y + F+ L + Q+ GRAGR
Sbjct: 808 SNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQF 867
Query: 316 QESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKT 375
+ GE I++ T D L + PI S +L D + +A +++E+
Sbjct: 868 DKFGEGIII--TTHDKLSHYLTLLTQQNPIESQF-LESLADNLNAEIALGTVTNVEEAVK 924
Query: 376 LIKHTLFY 383
I +T Y
Sbjct: 925 WISYTYLY 932
>UNIPROTKB|E1BH78 [details] [associations]
symbol:LOC100850262 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005682 "U5
snRNP" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
CTD:23020 EMBL:DAAA02030116 IPI:IPI00695338 RefSeq:NP_001193092.1
UniGene:Bt.7486 ProteinModelPortal:E1BH78 PRIDE:E1BH78
Ensembl:ENSBTAT00000001130 GeneID:510529 KEGG:bta:510529
NextBio:20869492 Uniprot:E1BH78
Length = 2136
Score = 293 (108.2 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 111/409 (27%), Positives = 202/409 (49%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E S K + + E + G + K +++ I +CT EK + +
Sbjct: 547 LVQEMVGSFGKRLATYGITVAE---LTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVL----YLKKSIQIFAMSATIGNINALS 116
+ L+++DE H+L++ RGP+LE +V++ + ++ +++ +SAT+ N ++
Sbjct: 604 TYTQLVRLVILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVA 662
Query: 117 TFI-----EGITYVENS-RPTKHSE-YVTV-DKRVFQSFDGKSLTEIYADNLDYSLTGSG 168
TF+ +G+ Y +NS RP + YV + +K+ + F + + EI + + + +G
Sbjct: 663 TFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRF--QIMNEIVYEKI---MEHAG 717
Query: 169 PDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDG 228
+ VL V + K A + + L+ D T +E E L+ E +
Sbjct: 718 KNQVLVFVHSRKE-----TGKTARAIRDMCLEKD----TLGLFLREGSASTEVLRTEAEQ 768
Query: 229 KLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVII 288
+ L++ + YG A HHA +T +R L+E+ + +Q++ T+TLA GVNLPA VII
Sbjct: 769 CKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVII 828
Query: 289 RDSYV-----GR--DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAG 341
+ + V GR + +L++ QM+GRAGR GE I++ + + + S++N
Sbjct: 829 KGTQVYSPEKGRWTELGALDIL-QMLGRAGRPQYDTKGEGILIT-SHGELQYYLSLLNQ- 885
Query: 342 PEPISSHMDPPTLVDLI-LEVVAANLCSSLEDVKTLIKHTLFYQ-LKSP 388
PI S M L D++ EVV N+ ++ + V L L+ + L+SP
Sbjct: 886 QLPIESQM-VSKLPDMLNAEVVLGNVQNAKDAVNWLGYAYLYIRMLRSP 933
Score = 255 (94.8 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 97/373 (26%), Positives = 176/373 (47%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G+ + L K S+ + T EK L Q + I L V+DE H++ + GP+LE
Sbjct: 1410 GETSTDLKLLGKGSVIVSTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLE 1468
Query: 88 CVVSKVLYL----KKSIQIFAMSATIGNINALSTFIE-GITYVENSRPTKHSEYVTVDKR 142
+ S++ Y+ ++ I+I A+S+++ N ++ ++ T N P V ++
Sbjct: 1469 VICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRP--VPLELH 1526
Query: 143 VFQSFD-GKSLTEIY--ADNLDYSLTGSGPDA-VLHLVQGNLMVLIFCSSKIACSNLALR 198
+ Q F+ + T + A + +++T P V+ V + + + A
Sbjct: 1527 I-QGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDIL--TTCAAD 1583
Query: 199 LQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258
+Q RF E +DLI L++ +D ST L+E +L GV Y H L+ ERRL+E
Sbjct: 1584 IQRQRFLHCTE------KDLIPYLEKLSD---ST-LKETLLNGVGYLHEGLSPLERRLVE 1633
Query: 259 EAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRD--FISLNMYK--QMVGRAGR 312
+ + +G +Q++ + +L G+N+ A VII D+ Y G+ ++ +Y QMVG A R
Sbjct: 1634 QLFSSGAIQVVVASRSLCWGLNVAAHLVIIMDTQYYNGKTHAYVDYPIYDVLQMVGHANR 1693
Query: 313 TGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLE 371
+ G +++C+ + +DF F + P P+ SH+D E+V + + +
Sbjct: 1694 PLQDDEGRCVIMCQGSKKDF--FKKFLYE-PLPVESHLDHCMHDHFNAEIVTKTI-ENKQ 1749
Query: 372 DVKTLIKHTLFYQ 384
D + T Y+
Sbjct: 1750 DAVDYLTWTFLYR 1762
Score = 39 (18.8 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 564 NVTSYFASKVYRFCEE 579
N T YF S Y C++
Sbjct: 2103 NYTLYFMSDAYMGCDQ 2118
>TAIR|locus:2037375 [details] [associations]
symbol:emb1507 "embryo defective 1507" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 EMBL:CP002684 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 GO:GO:0016020 GO:GO:0003676
GO:GO:0030529 EMBL:AC007369 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 KO:K12854 OMA:KWDVLSR
GO:GO:0008026 ProtClustDB:CLSN2679454 IPI:IPI00536616 PIR:E86342
RefSeq:NP_001185050.1 RefSeq:NP_173520.1 UniGene:At.11196
UniGene:At.21273 ProteinModelPortal:Q9SYP1 SMR:Q9SYP1 IntAct:Q9SYP1
STRING:Q9SYP1 PRIDE:Q9SYP1 ProMEX:Q9SYP1 EnsemblPlants:AT1G20960.1
EnsemblPlants:AT1G20960.2 GeneID:838690 KEGG:ath:AT1G20960
TAIR:At1g20960 InParanoid:Q9SYP1 PhylomeDB:Q9SYP1
Genevestigator:Q9SYP1 Uniprot:Q9SYP1
Length = 2171
Score = 294 (108.6 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 117/444 (26%), Positives = 207/444 (46%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E +L+ +++ + E +G + T R++ + I + T EK +
Sbjct: 571 LVAEVVGNLSNRLKDYGVIVRELSGDQSL---TGREIEETQIIVTTPEKWDIITRKSGDR 627
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLY----LKKSIQIFAMSATIGNINALS 116
+ L++IDE H+L++ RGP+LE +V++ L K++I++ +SAT+ N ++
Sbjct: 628 TYTQLVRLLIIDEIHLLHD-NRGPVLESIVARTLRQIETTKENIRLVGLSATLPNYEDVA 686
Query: 117 TFI-----EGITYVENS-RPTK-HSEYVTVD-KRVFQSFDGKSLTEIYADNLDYSLTGSG 168
F+ +G+ + S RP H +Y+ + K+ Q F + + ++ + L G+G
Sbjct: 687 LFLRVDLKKGLFKFDRSYRPVPLHQQYIGISVKKPLQRF--QLMNDLCYQKV---LAGAG 741
Query: 169 PDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLI--EALKEEN 226
H VLIF S+ S A ++ D + KED + + L
Sbjct: 742 K----H------QVLIFVHSRKETSKTARAIR-DTAMANDTLSRFLKEDSVTRDVLHSHE 790
Query: 227 DGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRV 286
D +++L++ + YG A HHA L+ G+R ++E + G +Q++ T+TLA GVNLPA V
Sbjct: 791 DIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVSTATLAWGVNLPAHTV 850
Query: 287 IIRDSYVGRD----FISLNMYK--QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNA 340
II+ + V ++ L+ QM+GRAGR + GE I++ + + S+MN
Sbjct: 851 IIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITG-YSELQYYLSLMNE 909
Query: 341 GPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFY--QLKSPE-----DQQT 393
PI S L E+V + ++ E L +T Y +++P
Sbjct: 910 -QLPIESQFISKLADQLNAEIVLGTVQNAREACHWL-GYTYLYIRMVRNPTLYGLAPDAL 967
Query: 394 FLETTLSEIVASLLASKGTMLTMN 417
+ L E A L+ S T+L N
Sbjct: 968 AKDVVLEERRADLIHSAATILDKN 991
Score = 198 (74.8 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 85/373 (22%), Positives = 167/373 (44%)
Query: 37 LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYL 96
L K I I T EK L Q + ++ L ++DE H++ Q GP+LE +VS++ Y+
Sbjct: 1444 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGG-QHGPVLEVIVSRMRYI 1502
Query: 97 KKS----IQIFAMSATIGNINALSTFIEGITY-VENSRPTKHSEYVTVDKRVFQSFDGKS 151
I+I A+S ++ N L +I ++ + N P V ++ + Q D S
Sbjct: 1503 SSQVINKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRP--VPLEIHI-QGVDISS 1559
Query: 152 LTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSK----IACSNLALRLQFDRFPGT 207
+ + ++T A++ + ++F ++ + +L D P +
Sbjct: 1560 ----FEARMQ-AMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDN-PQS 1613
Query: 208 KEY---KKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAG 264
++ K +E + +E ++EE L+E + +G+ Y H L++ ++ ++ + + AG
Sbjct: 1614 PDFLLGKLEELDPFVEQIREET-------LKETLCHGIGYLHEGLSSLDQEIVTQLFEAG 1666
Query: 265 TLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRDFISLNMYK-----QMVGRAGRTGLQE 317
+Q+ +S+L G L A V++ + Y GR+ S + Y QM+GRA R L
Sbjct: 1667 RIQVCVMSSSLCWGTPLTAHLVVVMGTQYYDGREN-SHSDYPVPDLLQMMGRASRPLLDN 1725
Query: 318 SGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLI 377
+G+ ++ C + + A P + S + L D V A + + +D +
Sbjct: 1726 AGKCVIFCHAPRKEYYKKFLYEAFP--VESQLQH-FLHDNFNAEVVAGVIENKQDAVDYL 1782
Query: 378 KHTLFYQLKSPED 390
T Y+ + P++
Sbjct: 1783 TWTFMYR-RLPQN 1794
Score = 38 (18.4 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 544 NHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPEL 583
N + V + +++ Q L ++ + RFC P +
Sbjct: 2008 NIETVFDLVEMEDEERQELLKMSDAQLLDIARFCNRFPNI 2047
>POMBASE|SPBC13G1.10c [details] [associations]
symbol:mug81 "ATP-dependent RNA helicase Slh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:2000765 "regulation of
cytoplasmic translation" evidence=ISS] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 PomBase:SPBC13G1.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0007126 GO:GO:2000765
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GO:GO:0004004 PIR:T39411
RefSeq:NP_596560.1 ProteinModelPortal:O60072 PRIDE:O60072
EnsemblFungi:SPBC13G1.10c.1 GeneID:2539673 KEGG:spo:SPBC13G1.10c
OMA:RKPTGEG OrthoDB:EOG4H75KM NextBio:20800827 Uniprot:O60072
Length = 1935
Score = 284 (105.0 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 110/417 (26%), Positives = 192/417 (46%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDE-IGLIVIDEFHMLNEPQRGPIL 86
G TK ++ + I + T EK + + + ++ E + L++IDE HML++ +RG ++
Sbjct: 376 GDMQLTKTEIAETQILVTTPEKWDVVTRKSVGDTQLAEKVRLVIIDEVHMLHD-ERGAVI 434
Query: 87 ECVVSKVLYL----KKSIQIFAMSATIGNINALSTFI-----EGITYVENS-RPTKHSEY 136
E +V++ L ++ I+I +SAT+ N ++ F+ +G+ Y ++ RP
Sbjct: 435 ESLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCP---- 490
Query: 137 VTVDKRVFQSFDG-KSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNL 195
+ Q F G K +I N+D + D VL L+Q V+IF S+ N
Sbjct: 491 ------IEQHFIGAKGSPKIVNSNIDEACF----DKVLKLIQEGHQVMIFVHSRKETINS 540
Query: 196 ALRLQFDRF-PGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGER 254
A +L+ F G + + + + + + L+E Y + H+A + +R
Sbjct: 541 AKKLREQFFHEGEADLLDNSQHEKYSLAQRDVSKSKNKELKELFKYSMGIHNAGMLRSDR 600
Query: 255 RLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR-----DSYVGRDFISLNMYK--QMV 307
L E + G L+I+CCT+TLA GVNLPA V+I+ D G F+ L + Q+
Sbjct: 601 HLTERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQKG-SFVDLGVLDVLQIF 659
Query: 308 GRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLC 367
GRAGR + S + ++ T D L + PI S LVD + V+
Sbjct: 660 GRAGRPQFESSAVAYII--TTHDKLSHYISVVTQQSPIESRFTD-RLVDNLNAEVSLGTV 716
Query: 368 SSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVAS-LLASKGTMLTMNEAGHLS 423
+++++ + + +T Y ++ + + E+V LL SK L AG L+
Sbjct: 717 TNIDEAVSWLGYTYLY-IRMRRNPLVY-GIAYDELVEDPLLGSKRRELVSVAAGRLA 771
Score = 274 (101.5 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 104/406 (25%), Positives = 190/406 (46%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G P + + +I I T EK + S + ++ LI++DE H+L RGP+LE
Sbjct: 1217 GDTNPDVKAVTNANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGS-DRGPVLE 1275
Query: 88 CVVSKVLYL----KKSIQIFAMSATIGNINALSTFI---EGITYVENS-RPTKHSEYVTV 139
+VS++ Y+ K +++ +S + N N L+ ++ +G+ +S RP Y+
Sbjct: 1276 MIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWLNIRDGLFNFRHSVRPVPLEIYI-- 1333
Query: 140 DKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAV-LHLVQGNLMVLIFCSSK----IACSN 194
F G++ Y + S+ A+ H VLIF SS+ + +
Sbjct: 1334 -----DGFPGRA----YCPRM-MSMNKPAFQAIKTH--SPTQPVLIFVSSRRQTRLTAKD 1381
Query: 195 LALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGER 254
L + P Y +E+ ++I + E+ KL+ + +G+A HHA LT +R
Sbjct: 1382 LIAFCGLEDNPRRFLYMDEEELEMIVSEVEDKSLKLA------LPFGIALHHAGLTENDR 1435
Query: 255 RLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR-----DSYVG--RDFISLNMYKQMV 307
++ EE ++ +QI+ TSTLA GVN PA VI++ D+ +G +D + L QM+
Sbjct: 1436 KISEELFVNNKVQILIATSTLAWGVNTPAHLVIVKGTEYYDAKIGGYKD-MDLTDVLQML 1494
Query: 308 GRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLC 367
GRAGR SG + + + ++ + +++G P+ S++ L + + +A
Sbjct: 1495 GRAGRPQFDNSGVARIFVQDIKKSF-YKHFLHSG-FPVESYLHK-VLDNHLNAEIATGTI 1551
Query: 368 SSLEDVKTLIKHTLFYQL--KSPE------DQQTFLETTLSEIVAS 405
++ + T FY+ ++P D Q ++T LS++V +
Sbjct: 1552 DCIQGAMDFLTCTYFYRRVHQNPVYYGADGDDQKSIDTYLSKLVVT 1597
Score = 46 (21.3 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 437 SHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILLSRS 484
S+ + ++ + LL NK N +++ H+L IP+ +PS +++ S
Sbjct: 1035 SNGLEILHHEQLLLNKRN---VSTSHLLSFTIPVSNPLPSQLYIIAVS 1079
Score = 43 (20.2 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 29/132 (21%), Positives = 57/132 (43%)
Query: 390 DQQTFLETTLSEIVASLLASKGTM------LTMNEAGHLSLTSIAKAAV--QAGLSHDVC 441
+++T+ TTL IV+ T+ +T N L+L +A+A+ + H+
Sbjct: 1612 NEETYAPTTLGRIVSYYYLFHTTIRNFVQKITENAEFDLALQLLAEASEFDDLAIRHNED 1671
Query: 442 LI---IYSDLLHNK--LNFCLLNSLHMLFLVIPLEY---RIPSDGILLSRSKVYDRYTKF 493
LI I L ++ LN ++++ F++ ++P D + S V D+ +
Sbjct: 1672 LINIEINKSLKYSAACLNLPMVDAHVKAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRI 1731
Query: 494 HPQTLRVAEALG 505
+ V+ LG
Sbjct: 1732 IQSYIDVSAELG 1743
>WB|WBGene00012896 [details] [associations]
symbol:snrp-200 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0018991 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272 KO:K12854
OMA:KWDVLSR GO:GO:0008026 EMBL:AL110485 RefSeq:NP_496710.1
ProteinModelPortal:Q9U2G0 SMR:Q9U2G0 IntAct:Q9U2G0
MINT:MINT-1062451 STRING:Q9U2G0 PaxDb:Q9U2G0
EnsemblMetazoa:Y46G5A.4 GeneID:174901 KEGG:cel:CELE_Y46G5A.4
UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4 InParanoid:Q9U2G0
NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 286 (105.7 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 107/411 (26%), Positives = 198/411 (48%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E S +K F + E G Q +K Q + +CT EK + +
Sbjct: 541 LVQEMVGSFSKRLAPFGITVGEMTG-DAQM--SKEQFMATQVIVCTPEKYDVVTRKGGER 597
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVL-YLKKS---IQIFAMSATIGNINALS 116
+ L++IDE H+L++ RGP+LE +V + + ++++ ++ +SAT+ N ++
Sbjct: 598 AYNQMVRLLIIDEIHLLHD-DRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVA 656
Query: 117 TFI----EGITYVENS-RPTK-HSEYVTV-DKRVFQSFDGKSLTEIYADNLDYSLTGSGP 169
TF+ E + + +NS RP +Y+ V +K+ + F +++ E+ D +
Sbjct: 657 TFLRVKPEHLHFFDNSYRPVPLEQQYIGVTEKKALKRF--QAMNEVVYDKI--------- 705
Query: 170 DAVLHLVQGNLMVLIFCSSKIACSNLALR---LQFDRFPGTKEYKKQEKEDLIEALKEEN 226
+ H + ++V + + A + A+R L+ D T +E E L+ E
Sbjct: 706 --MEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKD----TLSAFMREGSASTEILRTEA 759
Query: 227 DGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRV 286
+ + +L++ + YG A HHA + +R L+E+ + +Q++ T+TLA GVNLPA V
Sbjct: 760 EQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTV 819
Query: 287 IIRDSYV-----GR--DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMN 339
II+ + + GR + +L++ QM+GRAGR + GE I++ + + S+MN
Sbjct: 820 IIKGTQIYNPEKGRWTELGALDIM-QMLGRAGRPQYDDRGEGILITNH-SELQYYLSLMN 877
Query: 340 AGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFY--QLKSP 388
P+ S M L D++ V SS+ + + +T + LK+P
Sbjct: 878 Q-QLPVESQM-VSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNP 926
Score = 41 (19.5 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 548 VAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDL 593
V ++ ++N + L + + V RFC P + +L D+
Sbjct: 1981 VFELLELENDDRSDILQMEGAELADVARFCNHYPSIEVATELENDV 2026
>UNIPROTKB|Q9U2G0 [details] [associations]
symbol:Y46G5A.4 "Putative U5 small nuclear
ribonucleoprotein 200 kDa helicase" species:6239 "Caenorhabditis
elegans" [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0042127 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
EMBL:AL110485 RefSeq:NP_496710.1 ProteinModelPortal:Q9U2G0
SMR:Q9U2G0 IntAct:Q9U2G0 MINT:MINT-1062451 STRING:Q9U2G0
PaxDb:Q9U2G0 EnsemblMetazoa:Y46G5A.4 GeneID:174901
KEGG:cel:CELE_Y46G5A.4 UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4
InParanoid:Q9U2G0 NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 286 (105.7 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 107/411 (26%), Positives = 198/411 (48%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E S +K F + E G Q +K Q + +CT EK + +
Sbjct: 541 LVQEMVGSFSKRLAPFGITVGEMTG-DAQM--SKEQFMATQVIVCTPEKYDVVTRKGGER 597
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVL-YLKKS---IQIFAMSATIGNINALS 116
+ L++IDE H+L++ RGP+LE +V + + ++++ ++ +SAT+ N ++
Sbjct: 598 AYNQMVRLLIIDEIHLLHD-DRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVA 656
Query: 117 TFI----EGITYVENS-RPTK-HSEYVTV-DKRVFQSFDGKSLTEIYADNLDYSLTGSGP 169
TF+ E + + +NS RP +Y+ V +K+ + F +++ E+ D +
Sbjct: 657 TFLRVKPEHLHFFDNSYRPVPLEQQYIGVTEKKALKRF--QAMNEVVYDKI--------- 705
Query: 170 DAVLHLVQGNLMVLIFCSSKIACSNLALR---LQFDRFPGTKEYKKQEKEDLIEALKEEN 226
+ H + ++V + + A + A+R L+ D T +E E L+ E
Sbjct: 706 --MEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKD----TLSAFMREGSASTEILRTEA 759
Query: 227 DGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRV 286
+ + +L++ + YG A HHA + +R L+E+ + +Q++ T+TLA GVNLPA V
Sbjct: 760 EQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTV 819
Query: 287 IIRDSYV-----GR--DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMN 339
II+ + + GR + +L++ QM+GRAGR + GE I++ + + S+MN
Sbjct: 820 IIKGTQIYNPEKGRWTELGALDIM-QMLGRAGRPQYDDRGEGILITNH-SELQYYLSLMN 877
Query: 340 AGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFY--QLKSP 388
P+ S M L D++ V SS+ + + +T + LK+P
Sbjct: 878 Q-QLPVESQM-VSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNP 926
Score = 41 (19.5 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 548 VAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDL 593
V ++ ++N + L + + V RFC P + +L D+
Sbjct: 1981 VFELLELENDDRSDILQMEGAELADVARFCNHYPSIEVATELENDV 2026
>UNIPROTKB|E3W982 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC096768 HGNC:HGNC:18536 IPI:IPI00965450
ProteinModelPortal:E3W982 SMR:E3W982 Ensembl:ENST00000508591
UCSC:uc003hon.1 ArrayExpress:E3W982 Bgee:E3W982 Uniprot:E3W982
Length = 489
Score = 263 (97.6 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 50/95 (52%), Positives = 67/95 (70%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V EK L+ E F++EEYAG KG++PPTKR+ KKS+YI TIEKG L+ SLI+
Sbjct: 393 IVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRR-EKKSLYIATIEKGHSLVNSLIET 451
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLY 95
RID +GL+V+DE HM+ E RG LE ++K+LY
Sbjct: 452 GRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILY 486
>UNIPROTKB|F1MFR1 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:DAAA02007913 EMBL:DAAA02007914
EMBL:DAAA02007915 EMBL:DAAA02007916 IPI:IPI00839892
Ensembl:ENSBTAT00000027789 Uniprot:F1MFR1
Length = 1438
Score = 265 (98.3 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 100/378 (26%), Positives = 179/378 (47%)
Query: 36 QLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSK--- 92
++ I + T EK + + + + L +IDE H++ + RGP LE VVS+
Sbjct: 377 EIQHAHIIMTTPEKWDSMTRKWRDNSLVHLVRLFLIDEVHVVKDENRGPTLEVVVSRMKT 436
Query: 93 VLYLKKSIQ---------IFAMSATIGNINALSTFI-EGITYVENSRPTKHSEYVTVDKR 142
V L +++ A+SATI N ++ ++ +G + + V + K
Sbjct: 437 VQILSPAVENTNSIIPMRFVAVSATIPNAEDIAEWLSDGERSAVCLKMDERHRPVKLRKV 496
Query: 143 V--FQSFDGKSLTEIYAD-NLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRL 199
V F S D + TE D L+Y + +++ L+FC+++ A L
Sbjct: 497 VLGFPSSDNQ--TEFKFDLTLNYKIA-----SIIQTYSDQKPTLVFCATRKGVQQAASVL 549
Query: 200 QFD-RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258
D +F T E +KQ + ++K D KL ++ +++GVAYHHA + +R+++E
Sbjct: 550 VKDAKFIMTVE-QKQRLQKCAYSIK---DSKLRVDI---LIHGVAYHHAGMELSDRKVVE 602
Query: 259 EAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTG 314
A+ G + ++ TSTLA GVNLPA V+I+ + Y G F S QM+GRAGR
Sbjct: 603 GAFTVGDIPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQ 662
Query: 315 LQESGESIMLCK--TMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLED 372
+ ++++ + T + +++ + + + H+ +++L + N+ +LE
Sbjct: 663 FDTTATAVIMTRLSTKEKYIQMLACSDTIESSLHRHLIEHLNAEIVLHTIT-NVNIALE- 720
Query: 373 VKTLIKHTLFY--QLKSP 388
I+ TL Y LK+P
Sbjct: 721 ---WIRSTLLYIRALKNP 735
Score = 58 (25.5 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 30/134 (22%), Positives = 59/134 (44%)
Query: 517 GKLKDEKKALLCRFFHACILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRF 576
G++K + + C V +F Q AK++ S + +L S F + +F
Sbjct: 853 GRIKTREMKVNCLIQAQLGCIPVQDFALTQDTAKIFR-NGSRITRWL---SDFVATQEKF 908
Query: 577 CEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARA 636
L L +L + ++ +P++ ++ G+ + A ++NAG +S + I
Sbjct: 909 AVLLNSL-----ILAKCFRCKLWENSPHVSKQLEKIGITLSNA--MVNAGLTSFKKIEET 961
Query: 637 DAKEMVAKI-RHLP 649
DA+E+ + RH P
Sbjct: 962 DARELELILNRHPP 975
>MGI|MGI:1925237 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex
subunit 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 MGI:MGI:1925237 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529
OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC137877 EMBL:AC153529
EMBL:AC159114 EMBL:BC032189 EMBL:BC059917 EMBL:AK021027
EMBL:AK052745 IPI:IPI00553687 RefSeq:NP_932124.2 UniGene:Mm.222497
PRIDE:E9PZJ8 Ensembl:ENSMUST00000035606 GeneID:77987 KEGG:mmu:77987
HOGENOM:HOG000157749 NextBio:347945 Bgee:E9PZJ8 Uniprot:E9PZJ8
Length = 2198
Score = 287 (106.1 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 108/394 (27%), Positives = 189/394 (47%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
+++K +EE G K G P + + K + + T EK + S + + ++ +
Sbjct: 1391 DDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNI 1450
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIEGITY 124
++IDE H+L E +RGP+LE +VS+ ++ +K ++I +S + N L+ ++ I
Sbjct: 1451 LIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLN-IKQ 1508
Query: 125 VE--NSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMV 182
+ N RP+ V ++ + Q F G+ Y + S+ A+ V
Sbjct: 1509 MGLFNFRPSVRP--VPLEVHI-QGFPGQH----YCPRMA-SMNKPAFQAIRSHSPAK-PV 1559
Query: 183 LIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLST----NLEECI 238
LIF SS+ AL L F T+E KQ + ++E D + T NL+ +
Sbjct: 1560 LIFVSSRRQTRLTALELI--AFLATEEDPKQ----WLNMDEQEMDNIIGTVRDSNLKLTL 1613
Query: 239 LYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR- 295
+G+ HHA L +R+ +EE ++ +Q++ TSTLA GVN PA VII+ + Y G+
Sbjct: 1614 AFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKT 1673
Query: 296 ----DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQ-DFLRFSSMMNAGPEPISSHMD 350
DF ++ QM+GRAGR + G++++L ++ DF + + P P+ S +
Sbjct: 1674 RRYVDFPITDVL-QMMGRAGRPQFDDQGKAVILVHDIKKDF--YKKFLYE-PFPVESSL- 1728
Query: 351 PPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
L D + +A +S +D I T F++
Sbjct: 1729 LGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFR 1762
Score = 262 (97.3 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 96/372 (25%), Positives = 177/372 (47%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEI-GLIVIDEFHMLNEPQRGPIL 86
G +K ++ + + + T EK + + + + +I L+++DE H+L+E RGP+L
Sbjct: 567 GDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHE-DRGPVL 625
Query: 87 ECVVSKVLYLKKS----IQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKR 142
E +V++ L +S I+I +SAT+ N ++TF+ Y+ V +
Sbjct: 626 ESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLG-- 683
Query: 143 VFQSFDG-KSLTEIYA-DNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQ 200
Q+F G KS ++ +N+D ++VL V+ V++F ++ A A+ L
Sbjct: 684 --QTFLGIKSTNKMQQLNNMDEVCY----ESVLKQVKAGHQVMVFVHARNATVRTAMSL- 736
Query: 201 FDRFPGTKE---YKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257
+R + + + E + ALK+ + + + E G + HHA + +R L+
Sbjct: 737 IERAKNSGQISCFLPTEGPEYGHALKQVQKSR-NKQVRELFSDGFSIHHAGMLRQDRNLV 795
Query: 258 EEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--QMVGRAG 311
E + G ++++ CT+TLA GVNLPA V+I+ + Y + F+ L + Q+ GRAG
Sbjct: 796 ENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAG 855
Query: 312 RTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLE 371
R + GE I++ T D L + PI S +L D + +A +++E
Sbjct: 856 RPQFDKFGEGIII--TTHDKLSHYLSLLTQQNPIESQF-LESLADNLNAEIALGTVTNVE 912
Query: 372 DVKTLIKHTLFY 383
+ + +T Y
Sbjct: 913 EAVRWMSYTYLY 924
Score = 37 (18.1 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 356 DLILEVVAANLCSSLEDVKT 375
D+ L V+ AN+ + DV T
Sbjct: 2175 DIYLNVIKANISTKDSDVFT 2194
>ZFIN|ZDB-GENE-061207-43 [details] [associations]
symbol:hfm1 "HFM1, ATP-dependent DNA helicase
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-061207-43 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 EMBL:BX927353 EMBL:CABZ01046504
IPI:IPI00897259 ProteinModelPortal:F1QWJ0
Ensembl:ENSDART00000099851 Bgee:F1QWJ0 Uniprot:F1QWJ0
Length = 1049
Score = 275 (101.9 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 105/433 (24%), Positives = 195/433 (45%)
Query: 36 QLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVS--KV 93
++ + T EK + + I L ++DE H++ + RG LE VVS K
Sbjct: 106 EIQDAHLIFTTAEKWDSMTRRWKDNCLLTSIRLFLVDEVHVVKDKTRGATLEVVVSRMKT 165
Query: 94 LYL---------KKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVF 144
++ K S++ A+SATI NI +S ++ + S ++V
Sbjct: 166 MHFYRQAINPESKASVRFVAVSATIPNIQDVSEWLSDESGPATCLEMDESHRPVKLRKVV 225
Query: 145 QSFD-GKSLTEIYAD-NLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFD 202
F G + E D +L+Y L ++ L+FCS++ A L D
Sbjct: 226 LGFPCGSNQNEFKFDLSLNYKLAN-----IIQTYSDQKPTLVFCSTRKGVQQSASVLAKD 280
Query: 203 -RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAY 261
RF + ++K++ +K N L L + +YG+ YHHA + +R++ E A+
Sbjct: 281 ARFIMSIDHKQR-------LVKYANS-LLDAKLRDLFVYGIGYHHAGMDVSDRKITENAF 332
Query: 262 LAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVG---RDFISLNMYKQMVGRAGRTGLQ 316
G L ++ TSTLA GVN+PA V+I+ + YVG ++ ++ QM+GRAGR
Sbjct: 333 TVGDLPVLFTTSTLAMGVNMPAHLVVIKSTMHYVGGACEEYSEADLL-QMIGRAGRPQFD 391
Query: 317 ESGESIMLCK--TMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVA-ANLC-----S 368
+ ++++ + T ++ F S ++ + +++ +++L ++ N+ S
Sbjct: 392 TTATAVIMTRPQTKDKYMHFLSGLDCIESSLHTNLVEHLNAEIVLHTISDVNMALDWIRS 451
Query: 369 SLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGT--MLTMNEAGHLSLTS 426
+ ++ L K+ Y PE + +ET L E+ L S + ++TM+E ++ T
Sbjct: 452 TFLYIRAL-KNPKHYGFP-PEVDKCGIETKLQELCLKNLNSLASFNLITMDEDINIKPTE 509
Query: 427 IAKAAVQAGLSHD 439
K + ++ D
Sbjct: 510 TGKLMARYCVAFD 522
Score = 41 (19.5 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 611 LPGVKIGRARQLLNAGYSSLELIARADAKEMVAKI-RHLP 649
L + + A L+NAG ++ I + +E+ + RH P
Sbjct: 665 LERIGLSLATALVNAGLTTFSKIEQTSPRELELIVNRHPP 704
>RGD|1307995 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex subunit
3" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 RGD:1307995 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 IPI:IPI01016410 UniGene:Rn.24209
Ensembl:ENSRNOT00000057016 UCSC:RGD:1307995
GeneTree:ENSGT00640000091272 ArrayExpress:F1LPQ2 Uniprot:F1LPQ2
Length = 2197
Score = 270 (100.1 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 99/394 (25%), Positives = 189/394 (47%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
+++K +EE G K G P + + K + + T EK + S + + ++ +
Sbjct: 1391 DDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNI 1450
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIEGITY 124
++IDE H+L E +RGP+LE +VS+ ++ +K ++I +S + N L+ ++ I
Sbjct: 1451 LIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLN-IKQ 1508
Query: 125 VE--NSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMV 182
+ N RP+ V ++ + Q F G+ Y + + ++ H ++
Sbjct: 1509 MGLFNFRPSVRP--VPLEVHI-QGFPGQH----YCPRMASMNKPAFQESHTHCPDRPCLL 1561
Query: 183 LIFCSSKIACSNLALRLQFDRFPGTKEYKKQ----EKEDLIEALKEENDGKLSTNLEECI 238
L ++ S +L+ F T+E KQ +++++ + D +NL+ +
Sbjct: 1562 L---PERMLSS--MTKLELIAFLATEEDPKQWLNMDEQEMENIIATVRD----SNLKLTL 1612
Query: 239 LYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR- 295
+G+ HHA L +R+ +EE ++ +Q++ TSTLA GVN PA VII+ + Y G+
Sbjct: 1613 AFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKT 1672
Query: 296 ----DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQ-DFLRFSSMMNAGPEPISSHMD 350
DF ++ QM+GRAGR + G++++L ++ DF + + P P+ S +
Sbjct: 1673 RRYVDFPITDVL-QMMGRAGRPQFDDQGKAVILVHDIKKDF--YKKFLYE-PFPVESSL- 1727
Query: 351 PPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
L D + +A +S +D I T F++
Sbjct: 1728 LGVLSDHLNAEIAGGTITSKQDALDYITWTYFFR 1761
Score = 260 (96.6 bits), Expect = 3.9e-18, P = 3.9e-18
Identities = 96/372 (25%), Positives = 177/372 (47%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEI-GLIVIDEFHMLNEPQRGPIL 86
G +K ++ + + + T EK + + + + +I L+++DE H+L+E RGP+L
Sbjct: 567 GDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHE-DRGPVL 625
Query: 87 ECVVSKVLYLKKS----IQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKR 142
E +V++ L +S I+I +SAT+ N ++TF+ Y+ V +
Sbjct: 626 ESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLG-- 683
Query: 143 VFQSFDG-KSLTEIYA-DNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQ 200
Q+F G KS ++ +N+D ++VL V+ V++F ++ A A+ L
Sbjct: 684 --QTFLGIKSANKMQQLNNMDEVCY----ESVLKQVKAGHQVMVFVHARNATVRTAMSL- 736
Query: 201 FDRFPGTKE---YKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257
+R + + + + + ALK+ + + + E G + HHA + +R L+
Sbjct: 737 IERAKNSGQISCFLPTQGPEYGHALKQVQKSR-NKQVRELFSDGFSIHHAGMLRQDRNLV 795
Query: 258 EEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--QMVGRAG 311
E + G ++++ CT+TLA GVNLPA VII+ + Y + F+ L + Q+ GRAG
Sbjct: 796 ENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAG 855
Query: 312 RTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLE 371
R + GE I++ T D L + PI S +L D + +A +++E
Sbjct: 856 RPQFDKFGEGIII--TTHDKLSHYLSLLTQQNPIESQF-LESLADNLNAEIALGTVTNVE 912
Query: 372 DVKTLIKHTLFY 383
+ + +T Y
Sbjct: 913 EAVKWMSYTYLY 924
>UNIPROTKB|F1LNJ2 [details] [associations]
symbol:Ascc3l1 "Protein Ascc3l1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 OMA:KWDVLSR GO:GO:0008026
IPI:IPI00562876 PRIDE:F1LNJ2 Ensembl:ENSRNOT00000043895
ArrayExpress:F1LNJ2 Uniprot:F1LNJ2
Length = 2139
Score = 294 (108.6 bits), Expect = 3.7e-19, Sum P(3) = 3.7e-19
Identities = 112/409 (27%), Positives = 202/409 (49%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E S K + + E + G + K +++ I +CT EK + +
Sbjct: 547 LVQEMVGSFGKRLATYGITVAE---LTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVL----YLKKSIQIFAMSATIGNINALS 116
+ LIV+DE H+L++ RGP+LE +V++ + ++ +++ +SAT+ N ++
Sbjct: 604 TYTQLVRLIVLDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVA 662
Query: 117 TFI-----EGITYVENS-RPTKHSE-YVTV-DKRVFQSFDGKSLTEIYADNLDYSLTGSG 168
TF+ +G+ Y +NS RP + YV + +K+ + F + + EI + + + +G
Sbjct: 663 TFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRF--QIMNEIVYEKI---MEHAG 717
Query: 169 PDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDG 228
+ VL V + K A + + L+ D T +E E L+ E +
Sbjct: 718 KNQVLVFVHSRKE-----TGKTARAIRDMCLEKD----TLGLFLREGSASTEVLRTEAEQ 768
Query: 229 KLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVII 288
+ L++ + YG A HHA +T +R L+E+ + +Q++ T+TLA GVNLPA VII
Sbjct: 769 CKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVII 828
Query: 289 RDSYV-----GR--DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAG 341
+ + V GR + +L++ QM+GRAGR GE I++ + + + S++N
Sbjct: 829 KGTQVYSPEKGRWTELGALDIL-QMLGRAGRPQYDTKGEGILIT-SHGELQYYLSLLNQ- 885
Query: 342 PEPISSHMDPPTLVDLI-LEVVAANLCSSLEDVKTLIKHTLFYQ-LKSP 388
PI S M L D++ E+V N+ ++ + V L L+ + L+SP
Sbjct: 886 QLPIESQM-VSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSP 933
Score = 254 (94.5 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 98/373 (26%), Positives = 176/373 (47%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G+ + L K +I I T EK L Q + I L V+DE H++ + GP+LE
Sbjct: 1413 GETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLE 1471
Query: 88 CVVSKVLYL----KKSIQIFAMSATIGNINALSTFIE-GITYVENSRPTKHSEYVTVDKR 142
+ S++ Y+ ++ I+I A+S+++ N ++ ++ T N P V ++
Sbjct: 1472 VICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRP--VPLELH 1529
Query: 143 VFQSFD-GKSLTEIY--ADNLDYSLTGSGPDA-VLHLVQGNLMVLIFCSSKIACSNLALR 198
+ Q F+ + T + A + +++T P V+ V + + + A
Sbjct: 1530 I-QGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDIL--TTCAAD 1586
Query: 199 LQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258
+Q RF E +DLI L++ +D ST L+E +L GV Y H L+ ERRL+E
Sbjct: 1587 IQRQRFLHCTE------KDLIPYLEKLSD---ST-LKETLLNGVGYLHEGLSPMERRLVE 1636
Query: 259 EAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--QMVGRAGR 312
+ + +G +Q++ + +L G+N+ A VII D+ Y G+ ++ +Y QMVG A R
Sbjct: 1637 QLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1696
Query: 313 TGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLE 371
+ G +++C+ + +DF F + P P+ SH+D E+V + + +
Sbjct: 1697 PLQDDEGRCVIMCQGSKKDF--FKKFLYE-PLPVESHLDHCMHDHFNAEIVTKTI-ENKQ 1752
Query: 372 DVKTLIKHTLFYQ 384
D + T Y+
Sbjct: 1753 DAVDYLTWTFLYR 1765
Score = 39 (18.8 bits), Expect = 3.7e-19, Sum P(3) = 3.7e-19
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 564 NVTSYFASKVYRFCEE 579
N T YF S Y C++
Sbjct: 2106 NYTLYFMSDAYMGCDQ 2121
Score = 37 (18.1 bits), Expect = 3.7e-19, Sum P(3) = 3.7e-19
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 387 SPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHL 422
SP +++ + S + ++AS+ MN A HL
Sbjct: 1628 SPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHL 1663
>UNIPROTKB|O75643 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA;TAS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IDA] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005682 GO:GO:0003676
Orphanet:791 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOVERGEN:HBG051896 KO:K12854
OMA:KWDVLSR GO:GO:0008026 GO:GO:0000354 EMBL:AY572488 EMBL:AK024391
EMBL:AK090671 EMBL:AB018331 EMBL:Z70200 EMBL:BC065924 EMBL:BC007577
IPI:IPI00168235 IPI:IPI00420014 RefSeq:NP_054733.2
UniGene:Hs.246112 PDB:2Q0Z PDB:4F91 PDB:4F92 PDB:4F93 PDBsum:2Q0Z
PDBsum:4F91 PDBsum:4F92 PDBsum:4F93 ProteinModelPortal:O75643
SMR:O75643 IntAct:O75643 MINT:MINT-5003904 STRING:O75643
PhosphoSite:O75643 PaxDb:O75643 PeptideAtlas:O75643 PRIDE:O75643
Ensembl:ENST00000323853 GeneID:23020 KEGG:hsa:23020 UCSC:uc002svu.3
CTD:23020 GeneCards:GC02M096940 H-InvDB:HIX0002273 HGNC:HGNC:30859
HPA:HPA029321 MIM:601664 MIM:610359 neXtProt:NX_O75643
PharmGKB:PA164726004 InParanoid:O75643 OrthoDB:EOG4WM4SS
PhylomeDB:O75643 ChiTaRS:SNRNP200 EvolutionaryTrace:O75643
GenomeRNAi:23020 NextBio:43966 ArrayExpress:O75643 Bgee:O75643
CleanEx:HS_SNRNP200 Genevestigator:O75643
GermOnline:ENSG00000144028 Uniprot:O75643
Length = 2136
Score = 293 (108.2 bits), Expect = 4.7e-19, Sum P(3) = 4.7e-19
Identities = 111/409 (27%), Positives = 202/409 (49%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E S K + + E + G + K +++ I +CT EK + +
Sbjct: 547 LVQEMVGSFGKRLATYGITVAE---LTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVL----YLKKSIQIFAMSATIGNINALS 116
+ LI++DE H+L++ RGP+LE +V++ + ++ +++ +SAT+ N ++
Sbjct: 604 TYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVA 662
Query: 117 TFI-----EGITYVENS-RPTKHSE-YVTV-DKRVFQSFDGKSLTEIYADNLDYSLTGSG 168
TF+ +G+ Y +NS RP + YV + +K+ + F + + EI + + + +G
Sbjct: 663 TFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRF--QIMNEIVYEKI---MEHAG 717
Query: 169 PDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDG 228
+ VL V + K A + + L+ D T +E E L+ E +
Sbjct: 718 KNQVLVFVHSRKE-----TGKTARAIRDMCLEKD----TLGLFLREGSASTEVLRTEAEQ 768
Query: 229 KLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVII 288
+ L++ + YG A HHA +T +R L+E+ + +Q++ T+TLA GVNLPA VII
Sbjct: 769 CKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVII 828
Query: 289 RDSYV-----GR--DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAG 341
+ + V GR + +L++ QM+GRAGR GE I++ + + + S++N
Sbjct: 829 KGTQVYSPEKGRWTELGALDIL-QMLGRAGRPQYDTKGEGILIT-SHGELQYYLSLLNQ- 885
Query: 342 PEPISSHMDPPTLVDLI-LEVVAANLCSSLEDVKTLIKHTLFYQ-LKSP 388
PI S M L D++ E+V N+ ++ + V L L+ + L+SP
Sbjct: 886 QLPIESQM-VSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSP 933
Score = 254 (94.5 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 98/373 (26%), Positives = 176/373 (47%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G+ + L K +I I T EK L Q + I L V+DE H++ + GP+LE
Sbjct: 1410 GETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLE 1468
Query: 88 CVVSKVLYL----KKSIQIFAMSATIGNINALSTFIE-GITYVENSRPTKHSEYVTVDKR 142
+ S++ Y+ ++ I+I A+S+++ N ++ ++ T N P V ++
Sbjct: 1469 VICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRP--VPLELH 1526
Query: 143 VFQSFD-GKSLTEIY--ADNLDYSLTGSGPDA-VLHLVQGNLMVLIFCSSKIACSNLALR 198
+ Q F+ + T + A + +++T P V+ V + + + A
Sbjct: 1527 I-QGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDIL--TTCAAD 1583
Query: 199 LQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258
+Q RF E +DLI L++ +D ST L+E +L GV Y H L+ ERRL+E
Sbjct: 1584 IQRQRFLHCTE------KDLIPYLEKLSD---ST-LKETLLNGVGYLHEGLSPMERRLVE 1633
Query: 259 EAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--QMVGRAGR 312
+ + +G +Q++ + +L G+N+ A VII D+ Y G+ ++ +Y QMVG A R
Sbjct: 1634 QLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1693
Query: 313 TGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLE 371
+ G +++C+ + +DF F + P P+ SH+D E+V + + +
Sbjct: 1694 PLQDDEGRCVIMCQGSKKDF--FKKFLYE-PLPVESHLDHCMHDHFNAEIVTKTI-ENKQ 1749
Query: 372 DVKTLIKHTLFYQ 384
D + T Y+
Sbjct: 1750 DAVDYLTWTFLYR 1762
Score = 39 (18.8 bits), Expect = 4.7e-19, Sum P(3) = 4.7e-19
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 564 NVTSYFASKVYRFCEE 579
N T YF S Y C++
Sbjct: 2103 NYTLYFMSDAYMGCDQ 2118
Score = 37 (18.1 bits), Expect = 4.7e-19, Sum P(3) = 4.7e-19
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 387 SPEDQQTFLETTLSEIVASLLASKGTMLTMNEAGHL 422
SP +++ + S + ++AS+ MN A HL
Sbjct: 1625 SPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHL 1660
>RGD|1584010 [details] [associations]
symbol:Hfm1 "HFM1, ATP-dependent DNA helicase homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1584010 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 IPI:IPI00766186
Ensembl:ENSRNOT00000033794 UCSC:RGD:1584010 Uniprot:F1LWY1
Length = 954
Score = 262 (97.3 bits), Expect = 5.5e-19, Sum P(2) = 5.5e-19
Identities = 99/375 (26%), Positives = 176/375 (46%)
Query: 36 QLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSK--- 92
++ +I + T EK + + I + L +IDE H++ + RGP LE VVS+
Sbjct: 106 EIQHANIIMTTPEKWDSMTRKWRDNSFIQLVRLFLIDEVHVIKDENRGPTLEVVVSRMKT 165
Query: 93 VLYLKKSIQ--------IFAMSATIGNINALSTFI-EGITYVENSRPTKHSEYVTVDKRV 143
V L K+++ A+SATI N ++ ++ +G + + V + K V
Sbjct: 166 VQSLSKTLENASPAPVRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVV 225
Query: 144 FQSFDGKSLTEIYAD-NLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFD 202
+ TE D L+Y + +V+ L+FC+++ A L D
Sbjct: 226 LGFPSSSNQTEFKFDLALNYKVY-----SVIRTYSDQKPTLVFCATRKGVQQAASVLVKD 280
Query: 203 -RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAY 261
+F T E K + L ++ D KL ++ ++YGV YHHA + +R+L+EE +
Sbjct: 281 AKFIITVEQKLR----LQKSAYSIRDSKL----KDTLVYGVGYHHAGMELSDRKLVEELF 332
Query: 262 LAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQE 317
+G L ++ TSTLA GVNLPA V+I+ + Y G F S QM+GRAGR
Sbjct: 333 TSGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYTGGAFEEYSETDILQMIGRAGRPQFDT 392
Query: 318 SGESIMLCK--TMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKT 375
+ ++++ + T + +++ + + + H+ +++L + ++ +L+
Sbjct: 393 TATAVIMTRLSTREKYVQMLACNDTVESSLHRHLIEHLNAEIVLHTIT-DVSIALD---- 447
Query: 376 LIKHTLFY--QLKSP 388
I+ TL Y LK+P
Sbjct: 448 WIRSTLLYIRALKNP 462
Score = 51 (23.0 bits), Expect = 5.5e-19, Sum P(2) = 5.5e-19
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 611 LPGVKIGRARQLLNAGYSSLELIARADAKEMVAKI-RHLP 649
L + I + ++NAG +S + I A+A+E+ + RH P
Sbjct: 664 LDKIGISLSNTMVNAGLTSFKKIEEANARELELILNRHPP 703
>WB|WBGene00013189 [details] [associations]
symbol:Y54E2A.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AL032646 RefSeq:NP_497060.2
ProteinModelPortal:Q9XWI1 SMR:Q9XWI1 PaxDb:Q9XWI1
EnsemblMetazoa:Y54E2A.4 GeneID:190256 KEGG:cel:CELE_Y54E2A.4
UCSC:Y54E2A.4 CTD:190256 WormBase:Y54E2A.4 Uniprot:Q9XWI1
Length = 2017
Score = 275 (101.9 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 136/511 (26%), Positives = 227/511 (44%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E+ K E+ Y V G P +L SI I T EK + S
Sbjct: 1237 LVRERVDDWKKKFEDGMGY--RVVEVSGDVTPDPEELAASSILITTPEKWDGISRSWATR 1294
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKV-LYLKKS------IQIFAMSATIGNIN 113
+ +GLIV+DE H+L RG +LE +VS++ + ++S +++ +S + N
Sbjct: 1295 EYVRRVGLIVLDEVHLLGV-DRGAVLEAIVSRLKMITRRSHVTEEPVRLLGLSTALANAG 1353
Query: 114 ALSTFIEGIT--YVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDA 171
++ ++ GI N RP+ ++V Q F G+ Y + + A
Sbjct: 1354 DVAEWL-GIPDEACYNFRPSVRPVPISVH---IQGFPGQH----YCPRMGL-MNKPAYKA 1404
Query: 172 VLHLVQGNLMVLIFCSSKIACSNLALR----LQFDRFPGTKEYKKQ---EKEDLIEALKE 224
+L VLIF SS+ AL L D P K++ E EDL+ A+K+
Sbjct: 1405 IL-TYSPRKPVLIFVSSRRQTRLTALAFVNLLIADHNP--KQWLNMDMLELEDLMAAIKD 1461
Query: 225 ENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQ 284
EN L+ + +G+ HHA L+A ER ++E+ ++ +Q++ T+TLA G+N PA
Sbjct: 1462 EN-------LKLTLPFGIGMHHAGLSAHERAIVEQLFIEKKIQVLIATATLAWGINCPAH 1514
Query: 285 RVIIR-----DSYVGR--DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR-FSS 336
VI++ D G+ DF ++ QM+GRAGR +S +++ +QD + F
Sbjct: 1515 LVIVKGTEYFDGKKGKYVDFPVTDVL-QMMGRAGRPQFDDSAVAVIY---VQDAKKTFYK 1570
Query: 337 MMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQL-KSP------E 389
P P+ S + P + E+ A + S V+ L K L+ +L +P E
Sbjct: 1571 KFLYEPFPVESSLLPVLPNHVNAEISAGTIDSKQAIVEYLSKTYLYRRLFANPNYYGLEE 1630
Query: 390 DQQT----FLETTLSEIVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIY 445
D + F+ + + VA LLAS+ + +E + T + A L H+ +
Sbjct: 1631 DSEEAMLKFITKIVDDSVAELLASECIHVD-SEQDVIKPTPCGRIASVYYLQHETVRFLV 1689
Query: 446 SDLLHNKLNFCLLNSLHMLFLVIPLEY-RIP 475
L H+ C + ++ + +P EY IP
Sbjct: 1690 KSL-HSG---CSVENMLKILTDVP-EYAEIP 1715
Score = 236 (88.1 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 95/379 (25%), Positives = 180/379 (47%)
Query: 33 TKRQLNKKSIYICTIEKGSKLIGSLIQENR-IDEIGLIVIDEFHMLNEPQRGPILECVVS 91
++ ++ + + T EK + +N I+ + L++IDE H+L++ +RGP++E +V+
Sbjct: 407 SRNEVADTQMLVLTPEKWDVITRKSTSDNSLINVVRLLIIDEVHLLHD-ERGPVIETLVA 465
Query: 92 KVLY---LKKS-IQIFAMSATIGNINALSTFI-----EGITYVENS-RPTKHSEYVTVDK 141
+ L + +S I+I +SAT+ N ++ F+ +G+ + + RP ++ +
Sbjct: 466 RTLRQVEMSQSGIRIVGLSATLPNFIDVARFLRVNPYKGLFFFDGRFRPVPLTQKFIGTR 525
Query: 142 RVFQSFDGKSLTE--IYADNLDYSLTGSGPDAVLHLVQGNLMV-LIFCSSKIACSNLALR 198
+ D +L + Y + +D+ G +H G + FC+ + L
Sbjct: 526 KAGNFRDNLTLMDNVCYDEVVDFVKRGHQVLVFVHTRNGTAKLGEAFCARASVLGQMDLF 585
Query: 199 LQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIE 258
L DR + +Y + +K I + N ++S + G+ HHA L +R L+E
Sbjct: 586 LPKDR--ASSKYIQADKA--INICR--NRAQISPLFQR----GMGIHHAGLCRQDRILME 635
Query: 259 EAYLAGTLQIICCTSTLAAGVNLPAQRVIIR--DSYVGRD--FISLNMY--KQMVGRAGR 312
+ G + ++ CT+TLA GVNLPA V+I+ D + F L + +Q+ GRAGR
Sbjct: 636 RCFAEGHVSVLFCTATLAWGVNLPAHAVVIKGTDVFDAEKGVFTDLGVLDVQQIFGRAGR 695
Query: 313 TGLQESGESIMLCKTMQDFL-RFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLE 371
+ G I++ T +D + ++ +M+ PI S L D + VA S+++
Sbjct: 696 PQFENEGHGIII--TTRDKIDKYLTML-VHQNPIESQFYA-RLHDNLNAEVALGTVSTVD 751
Query: 372 DVKTLIKHTLFYQ--LKSP 388
+ + +T Y LK+P
Sbjct: 752 EGVEWLTYTYMYTRALKNP 770
Score = 43 (20.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 30/136 (22%), Positives = 53/136 (38%)
Query: 457 LLNSLHMLFLVIPLEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNV- 515
LL H + V+P +YR +L ++ + R+ L T N++ L
Sbjct: 1749 LLFQAHFMRTVLPTDYRTDLKSVLDQCIRILQAMREM----ARLKNWLSATMNIILLQQM 1804
Query: 516 --TGKLKDEKKALLC--RFFH--ACILYD---VLNFDNHQKVAKMYGIQNSHLQNFLNVT 566
+ + D+ LLC H A + D + NH ++ K + ++ L
Sbjct: 1805 CHSARWHDDHP-LLCLPHLSHEDARSIGDGMTIPQLQNHLEIEKSTSLDDAKLARR---- 1859
Query: 567 SYFASKVYRFCEELPE 582
A K++R C +L E
Sbjct: 1860 ---AQKLFRECTKLDE 1872
>UNIPROTKB|E2RA34 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 CTD:164045
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823 RefSeq:XP_537081.3
Ensembl:ENSCAFT00000032148 GeneID:479956 KEGG:cfa:479956
Uniprot:E2RA34
Length = 1437
Score = 260 (96.6 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 96/375 (25%), Positives = 175/375 (46%)
Query: 36 QLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLY 95
++ I + T EK + + + + L +IDE H++ + RGP LE VVS++
Sbjct: 377 EIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSRMKT 436
Query: 96 LKK-----------SIQIFAMSATIGNINALSTFI-EGITYVENSRPTKHSEYVTVDKRV 143
++ ++ A+SATI N ++ ++ +G + + V + K V
Sbjct: 437 VQSLSPPSENSTVIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDEKHRPVKLQKVV 496
Query: 144 FQSFDGKSLTEIYAD-NLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFD 202
G + TE D L+Y + G V+ L+FC+++ A L D
Sbjct: 497 LGFPCGSNQTEFKFDLTLNYKIAG-----VIRTYSDQKPTLVFCATRKGVQQAASVLVKD 551
Query: 203 -RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAY 261
+F E +KQ + +++ D KL + +++GVAYHHA + +R+++E A+
Sbjct: 552 AKFIMAVE-QKQRLQKYAYSIR---DSKL----RDILIHGVAYHHAGMELSDRKVVEGAF 603
Query: 262 LAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQE 317
G L ++ TSTLA GVNLPA V+I+ + Y G F S QM+GRAGR
Sbjct: 604 TVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQFDT 663
Query: 318 SGESIMLCK--TMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKT 375
+ ++++ + T + +++ + + + H+ +++L + ++ +LE
Sbjct: 664 TATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTIT-DVNIALE---- 718
Query: 376 LIKHTLFY--QLKSP 388
I+ TL Y LK+P
Sbjct: 719 WIRSTLLYIRALKNP 733
Score = 52 (23.4 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 604 NLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKI-RHLP 649
+L L + I + ++NAG +S + I DA+E+ + RH P
Sbjct: 927 SLHVSKQLEKIGITLSNAMVNAGLTSFKKIEETDARELELILNRHPP 973
>FB|FBgn0038344 [details] [associations]
symbol:CG5205 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0006200 GO:GO:0005682 GO:GO:0003676
GO:GO:0004386 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0008026 GO:GO:0016779 FlyBase:FBgn0038344 RefSeq:NP_650472.2
UniGene:Dm.1213 ProteinModelPortal:Q9VF56 SMR:Q9VF56
EnsemblMetazoa:FBtr0083147 GeneID:41891 KEGG:dme:Dmel_CG5205
UCSC:CG5205-RA InParanoid:Q9VF56 PhylomeDB:Q9VF56 GenomeRNAi:41891
NextBio:826131 ArrayExpress:Q9VF56 Bgee:Q9VF56 Uniprot:Q9VF56
Length = 2183
Score = 262 (97.3 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 105/409 (25%), Positives = 186/409 (45%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G P + + + + + T EK + S + + LIVIDE H+L E RGP++E
Sbjct: 1420 GDVTPDIQAIRESQLIVTTPEKWDGISRSWQTREYVQHVSLIVIDEIHLLGE-DRGPVIE 1478
Query: 88 CVVSKVLYLK----KSIQIFAMSATIGNINALSTFIEGITYVE--NSRPTKHSEYVTVDK 141
+VS+ ++ ++I+I +S + N L+ ++ GI + N +P+ + V
Sbjct: 1479 VIVSRTNFISSHTGRAIRIVGLSTALANAQDLANWL-GINKMGLYNFKPSVRPVPLQVH- 1536
Query: 142 RVFQSFDGKSLTEIYADNLDYSLTGSGPD-AVLHLVQGNLMVLIFCSSKIACSNLALRLQ 200
F GK Y + T + P + ++F SS+ AL L
Sbjct: 1537 --INGFPGKH----YCPRM---ATMNRPTFQAIRTYSPCEPTIVFVSSRRQTRLTALDLI 1587
Query: 201 FDRFPGTKEYKKQE---KEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLI 257
F + KQ ED IE + + + NL+ C+ +G+ HHA L +R+ +
Sbjct: 1588 --TFVAGESNPKQFLHIPEDEIELILQNIREQ---NLKFCLAFGIGLHHAGLQEQDRKCV 1642
Query: 258 EEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--QMVGRAG 311
EE +L +QI+ T+TLA GVNLPA V+I+ + + G+ ++ + + QM+GRAG
Sbjct: 1643 EELFLNRKIQILVATATLAWGVNLPAHLVVIKGTEYFDGKVKKYVDMPITDVLQMMGRAG 1702
Query: 312 RTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCS--- 368
R G +++L + F P P+ S + + E+VA + S
Sbjct: 1703 RPQFDNEGVAVVLVHDEKK--NFYKKFLYDPFPVESSLLGVLPEHINAEIVAGTVQSKQA 1760
Query: 369 SLEDV------KTLIKHTLFYQLKS--PEDQQTFLETTLSEIVASLLAS 409
+L+ + + L+++ +YQL+ PE+ F+ + +V L A+
Sbjct: 1761 ALDYLTWTYFFRRLLRNPSYYQLQDIEPENVNNFMSNLVERVVYELSAA 1809
Score = 229 (85.7 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 104/407 (25%), Positives = 188/407 (46%)
Query: 4 EKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLI--GSLIQEN 61
E + +K + + + E + G TK ++ I + T EK + GS
Sbjct: 555 EMVDNFSKRLKSLQIAVRE---LTGDIQLTKAEMAATQILVTTPEKWDVVTRKGSG-DVA 610
Query: 62 RIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKS----IQIFAMSATIGNINALST 117
I + L++IDE H+L+ +RGP++E +V++ L L +S I+I +SAT+ N ++
Sbjct: 611 LISLVELLIIDEVHLLHG-ERGPVVEALVARTLRLVESSQSMIRIVGLSATLPNYIDVAH 669
Query: 118 FI-----EGITYVENS-RPTK-HSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPD 170
F+ +G+ Y ++ RP + +V + K V K L +I AD +D
Sbjct: 670 FLRVNPMKGLFYFDSRFRPVPLDTNFVGI-KSV------KQLQQI-AD-MDQCCY----Q 716
Query: 171 AVLHLVQGNLMVLIFCSSK---IACSNLALRL-QFDRFPGTKEYKKQEKEDLIEALKEEN 226
+ +VQ +++F ++ + +N+ L Q + K L + +
Sbjct: 717 KCVEMVQEGHQIMVFVHARNATVRTANVIRELAQQNNTSALFLPKDSAAHGLATRSIQRS 776
Query: 227 DGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRV 286
K L C G+A HHA + +R+++E+ ++ G + ++ CT+TLA GVNLPA V
Sbjct: 777 RNKQLVELFSC---GLAMHHAGMLRADRQMVEKYFVEGHISVLVCTATLAWGVNLPAHAV 833
Query: 287 IIR--DSYVGR--DFISLNMYK--QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNA 340
IIR D Y + F+ L + Q+ GRAGR +SG ++ T D L +
Sbjct: 834 IIRGTDIYDAKHGSFVDLGILDVLQIFGRAGRPQFDKSGVGTII--TSYDKLNHYLSLLT 891
Query: 341 GPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHT-LFYQLK 386
PI S+ L D + + +++++ + +T LF +++
Sbjct: 892 NQFPIESNF-VNCLADNLNAEIGLGTITNVDEAIEWLSYTYLFVRMR 937
Score = 41 (19.5 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 469 PLEYRIPSDGILLS--RSKVYD---RYTKFHPQTLRVAEALGVTENLVALNV-TGKLK 520
PL +P + +S ++ VY+ ++T F+P ++ L T+N V L TG K
Sbjct: 1308 PLTELLPLRPLPVSCLKNVVYESLYKFTHFNPIQTQIFHCLYHTDNNVLLGAPTGSGK 1365
>UNIPROTKB|E2R5U9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823
Ensembl:ENSCAFT00000035369 Uniprot:E2R5U9
Length = 1466
Score = 260 (96.6 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 96/375 (25%), Positives = 175/375 (46%)
Query: 36 QLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLY 95
++ I + T EK + + + + L +IDE H++ + RGP LE VVS++
Sbjct: 377 EIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSRMKT 436
Query: 96 LKK-----------SIQIFAMSATIGNINALSTFI-EGITYVENSRPTKHSEYVTVDKRV 143
++ ++ A+SATI N ++ ++ +G + + V + K V
Sbjct: 437 VQSLSPPSENSTVIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDEKHRPVKLQKVV 496
Query: 144 FQSFDGKSLTEIYAD-NLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFD 202
G + TE D L+Y + G V+ L+FC+++ A L D
Sbjct: 497 LGFPCGSNQTEFKFDLTLNYKIAG-----VIRTYSDQKPTLVFCATRKGVQQAASVLVKD 551
Query: 203 -RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAY 261
+F E +KQ + +++ D KL + +++GVAYHHA + +R+++E A+
Sbjct: 552 AKFIMAVE-QKQRLQKYAYSIR---DSKL----RDILIHGVAYHHAGMELSDRKVVEGAF 603
Query: 262 LAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQE 317
G L ++ TSTLA GVNLPA V+I+ + Y G F S QM+GRAGR
Sbjct: 604 TVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQFDT 663
Query: 318 SGESIMLCK--TMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKT 375
+ ++++ + T + +++ + + + H+ +++L + ++ +LE
Sbjct: 664 TATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTIT-DVNIALE---- 718
Query: 376 LIKHTLFY--QLKSP 388
I+ TL Y LK+P
Sbjct: 719 WIRSTLLYIRALKNP 733
Score = 52 (23.4 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 604 NLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKI-RHLP 649
+L L + I + ++NAG +S + I DA+E+ + RH P
Sbjct: 927 SLHVSKQLEKIGITLSNAMVNAGLTSFKKIEETDARELELILNRHPP 973
>UNIPROTKB|G4N5J1 [details] [associations]
symbol:MGG_06124 "Activating signal cointegrator 1 complex
subunit 3" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 EMBL:CM001233 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GO:GO:0008026 RefSeq:XP_003711991.1
ProteinModelPortal:G4N5J1 EnsemblFungi:MGG_06124T0 GeneID:2684274
KEGG:mgr:MGG_06124 Uniprot:G4N5J1
Length = 1998
Score = 261 (96.9 bits), Expect = 2.7e-18, P = 2.7e-18
Identities = 98/373 (26%), Positives = 177/373 (47%)
Query: 33 TKRQLNKKSIYICTIEKGSKLIGSLIQENR-IDEIGLIVIDEFHMLNEPQRGPILECVVS 91
TK ++ + I + T EK + + + ++ L++IDE HML++ +RG +LE +V+
Sbjct: 396 TKTEIVQTQIIVTTPEKWDVVTRKGTGDTELVQKVRLLIIDEVHMLHD-ERGAVLESLVA 454
Query: 92 K----VLYLKKSIQIFAMSATIGNINALSTFI-----EGITYVENS-RPTKHSEYVTVDK 141
+ V + I+I +SAT+ N ++ F+ +G+ Y + S RP ++
Sbjct: 455 RTERQVESTQSLIRIVGLSATLPNFIDVADFLKVNRMQGLFYFDASFRPVPLEQH----- 509
Query: 142 RVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQF 201
F GK+ T+ +NLD D V +++ + V++F S+ A L
Sbjct: 510 --FIGVKGKAGTKQSRENLDEVAF----DKVREMLEKDHQVMVFVHSRRDTLQTAKMLH- 562
Query: 202 DRFPGTK-----EYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRL 256
+R + K D A+++ K + L + + G+ HHA +T +R L
Sbjct: 563 ERAVDQACLDLFDPSMHPKYDA--AIRDMKTCK-ARELRDLVPKGMGIHHAGMTRSDRNL 619
Query: 257 IEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRD--FISLNMYK--QMVGRA 310
+E + G L+++CCT+TLA GVNLPA V+I+ + Y ++ F+ L + Q+ GRA
Sbjct: 620 MERLFAEGVLKVLCCTATLAWGVNLPAAAVVIKGTQVYSAQEGKFVDLGILDVLQIFGRA 679
Query: 311 GRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSL 370
GR +++G M+C T + + + PI S LVD + +A +S+
Sbjct: 680 GRPQFEDTGIG-MICTTADKLSHYLTAVT-DQLPIESRFSSK-LVDNLNAEIALGTVTSI 736
Query: 371 EDVKTLIKHTLFY 383
+ I ++ Y
Sbjct: 737 PEAVQWIGYSYLY 749
Score = 187 (70.9 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
Identities = 61/196 (31%), Positives = 102/196 (52%)
Query: 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR---- 289
L+E I +G+ HHA L +R+L EE +L +QI+ TSTLA GVNLPA V+++
Sbjct: 1435 LKEAISFGIGLHHAGLVESDRQLAEELFLNNKIQILVATSTLAWGVNLPAHLVVVKGTQF 1494
Query: 290 -DSYV-GRDFISLNMYKQMVGRAGRTGLQESGES-IMLCKTMQDFLRFSSMMNAGPEPIS 346
D+ + G + L QM+GRAGR SG + I + +DF + ++ G P+
Sbjct: 1495 YDAKIEGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFTQDSKKDF--YKHFLHTG-FPVE 1551
Query: 347 SHMDPPTLVD--LILEVVAANLCSSLE--DVKT-------LIKHTLFYQLKSPEDQQTFL 395
S + T++D L E+ A + + + D T L K+ +Y L+ P ++QT +
Sbjct: 1552 SSLH--TVLDNHLCAEISAETIITKQDALDYLTWTFFFRRLHKNPSYYGLEIPVEEQTSI 1609
Query: 396 --ETTLSEIVASLLAS 409
+ ++ + S++ S
Sbjct: 1610 AAQQAANDYIISMIDS 1625
Score = 128 (50.1 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
Identities = 41/146 (28%), Positives = 68/146 (46%)
Query: 1 MVHEKYQSL-AKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQ 59
+V E+ + A+ A+ L E + G P R + + I T EK + S
Sbjct: 1211 LVRERVKDWGARLAQPMGLKLVE---LTGDNTPDTRTIKDADVIITTPEKWDGISRSWQT 1267
Query: 60 ENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINAL 115
+ ++ L++IDE H+L RGPILE +VS++ Y+ K S+++ MS N L
Sbjct: 1268 RGYVRQVSLVIIDEIHLL-AGDRGPILEIIVSRMNYIAASTKNSVRLLGMSTACANATDL 1326
Query: 116 STFI---EGITYVENS-RPTKHSEYV 137
++ EG+ +S RP Y+
Sbjct: 1327 GNWLGVKEGLFNFRHSVRPVPLELYI 1352
Score = 42 (19.8 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 15/71 (21%), Positives = 36/71 (50%)
Query: 59 QENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTF 118
+E R +IG I ++++L+ + + ++S +++ AMS NI + +
Sbjct: 800 EELRSKDIGRIA-SQYYILHTSIQ--VFNTMMSPYATEADVLKMIAMSGEFDNIQSRDSE 856
Query: 119 IEGITYVENSR 129
+ +T +++SR
Sbjct: 857 AKELTRMKDSR 867
>TAIR|locus:2059969 [details] [associations]
symbol:AT2G42270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003676 EMBL:AC002561 GO:GO:0030529
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 UniGene:At.12448 UniGene:At.43726 KO:K12854
OMA:RDTHESS GO:GO:0008026 IPI:IPI00539463 PIR:T00936
RefSeq:NP_181756.1 ProteinModelPortal:O48534 SMR:O48534
STRING:O48534 PaxDb:O48534 PRIDE:O48534 EnsemblPlants:AT2G42270.1
GeneID:818828 KEGG:ath:AT2G42270 TAIR:At2g42270 InParanoid:O48534
PhylomeDB:O48534 ProtClustDB:CLSN2679454 ArrayExpress:O48534
Genevestigator:O48534 Uniprot:O48534
Length = 2172
Score = 277 (102.6 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 122/447 (27%), Positives = 207/447 (46%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E SL++ ++F ++E +G + T +++ + I + T EK +
Sbjct: 572 LVAEVVDSLSQRLKDFGVTVKELSGDQSL---TGQEIKETQIIVTTPEKWDIITRKSGDR 628
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLY----LKKSIQIFAMSATIGNINALS 116
+ L++IDE H+L++ RGP+LE +V++ L K+ I++ +SAT+ N + ++
Sbjct: 629 TYTQLVRLLIIDEIHLLDD-NRGPVLESIVARTLRQIESTKEHIRLVGLSATLPNCDDVA 687
Query: 117 TFIE-----GITYVENS-RPTK-HSEYVTVD-KRVFQSFDGKSLTEIYADNLDYSLTGSG 168
+F+ G+ + S RP +Y+ ++ K+ + F +++ Y +
Sbjct: 688 SFLRVDLKNGLFIFDRSYRPVPLGQQYIGINVKKPLRRFQ-------LMNDICYQKVVA- 739
Query: 169 PDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLI--EALKEEN 226
V G VLIF S+ + A ++ D + KED E LK
Sbjct: 740 -------VAGKHQVLIFVHSRKETAKTARAIR-DTAMANDTLSRFLKEDSQSREILKCLA 791
Query: 227 DGKLSTN-LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQR 285
G L N L+E + YG A HHA LT +R ++E + G LQ++ T+TLA GVNLPA
Sbjct: 792 -GLLKNNDLKELLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHT 850
Query: 286 VIIRDSYVGR----DFISLNMYK--QMVGRAGRTGLQESGESIMLC--KTMQDFLRFSSM 337
VII+ + V +++ L+ QM+GRAGR + GE I++ +Q +LR +
Sbjct: 851 VIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIITGYSKLQYYLR---L 907
Query: 338 MNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFY--QLKSP-----ED 390
MN PI S L E+V + ++ E L +T Y +++P
Sbjct: 908 MNE-QLPIESQFISKLADQLNAEIVLGTIQNAREACHWL-GYTYLYVRMVRNPTLYGVSP 965
Query: 391 QQTFLETTLSEIVASLLASKGTMLTMN 417
+ L E A L+ S T+L N
Sbjct: 966 DALAKDLLLEERRADLIHSAATILDKN 992
Score = 184 (69.8 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 89/371 (23%), Positives = 158/371 (42%)
Query: 37 LNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYL 96
L K I I T EK L Q I ++ L ++DE H++ Q G +LE +VS++ Y+
Sbjct: 1445 LEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGG-QGGQVLEVIVSRMRYI 1503
Query: 97 KKS----IQIFAMSATIGNINALSTFIE----GI-TYVENSRPTKHSEYVT-VDKRVFQS 146
I+I A+S ++ N L +I G+ + N RP ++ VD F++
Sbjct: 1504 SSQVGNKIRIVALSTSLANAKDLGEWIGASSCGVFNFPPNVRPVPLEIHIHGVDILSFEA 1563
Query: 147 FDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPG 206
Y + ++ P V V V + IA S++ D G
Sbjct: 1564 RMQAMTKPTYTAIVQHA-KNKKPAIVF--VPTRKHVRLTAVDLIAYSHMDNMKSPDFLLG 1620
Query: 207 TKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTL 266
E E E + + EE L+E + +G+ Y H L+ ++ ++ + + AG +
Sbjct: 1621 NLE----ELEPFLIQICEET-------LKETLRHGIGYLHEGLSNLDQEIVTQLFEAGRI 1669
Query: 267 QIICCTSTLAAGVNLPAQRVIIRDS--YVGR-----DFISLNMYKQMVGRAGRTGLQESG 319
Q+ +S+L G L A V++ + Y GR D+ N+ QM+GR R L ++G
Sbjct: 1670 QVCVMSSSLCWGTPLKAHLVVVMGTHFYDGRENSHSDYPISNLL-QMMGRGSRPLLDDAG 1728
Query: 320 ESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKH 379
+ ++ C + + A P+ SH+ L D V A + + +D +
Sbjct: 1729 KCVIFCHAPRKEYYKKFLYEA--LPVESHLQH-FLHDNFNAEVVARVIENKQDAVDYLTW 1785
Query: 380 TLFYQLKSPED 390
+ Y+ + P++
Sbjct: 1786 SFMYR-RLPQN 1795
Score = 37 (18.1 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 543 DNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPEL 583
+N + + + +++ Q L ++ + RFC P +
Sbjct: 2008 NNIETIFDLVEMEDDKRQELLQMSDAQLLDIARFCNRFPNI 2048
>GENEDB_PFALCIPARUM|PFD1060w [details] [associations]
symbol:PFD1060w "u5 small nuclear
ribonucleoprotein-specific protein, putative" species:5833
"Plasmodium falciparum" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 236 (88.1 bits), Expect = 4.5e-18, Sum P(3) = 4.5e-18
Identities = 92/312 (29%), Positives = 154/312 (49%)
Query: 97 KKSIQIFAMSATIGNINALSTFIE-----GITYVENS-RPTK-HSEYVTVDKRVFQSFDG 149
+K I++ +SAT+ N + F+ GI Y ++S RP + Y+ + ++
Sbjct: 964 RKKIRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHYIGIKEK------- 1016
Query: 150 KSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKE 209
K + + YA L LT + VL G +LIF S+ + +L DRF +
Sbjct: 1017 KGIKK-YA--LMNELTY---EKVLEEA-GKNQILIFVHSRKETYRTS-KLLIDRFMKSDN 1068
Query: 210 YKKQ--EKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQ 267
K +K+ E L E + ++ L+E + +G HHA L +R+L+E+ + +Q
Sbjct: 1069 LSKFLIDKKISSEILLSEKEHVINEELKEILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQ 1128
Query: 268 IICCTSTLAAGVNLPAQRVIIRDSYVGR----DFISLNMYK--QMVGRAGRTGLQESGES 321
++ CTSTLA G+NLPA VII+ + V DF L+ QMVGR+GR +SG++
Sbjct: 1129 VLVCTSTLAWGINLPAHTVIIKGTSVYNINIGDFDELSSMDVLQMVGRSGRPQYDKSGKA 1188
Query: 322 IMLC--KTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLI-LEVVAANLCSSLEDVKTLIK 378
I++ K +Q +L ++ E H +V++I E+V N+ +++D ++
Sbjct: 1189 IIITDHKNLQLYLSLNNEQ-LFIESTLLH----NIVNIINAEIVLKNI-QNMDDAMNWLE 1242
Query: 379 HTLFY--QLKSP 388
HT Y LK P
Sbjct: 1243 HTYMYIRMLKCP 1254
Score = 89 (36.4 bits), Expect = 4.5e-18, Sum P(3) = 4.5e-18
Identities = 25/105 (23%), Positives = 52/105 (49%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V+E+ QS + + E + G + ++L+ I + T EK + ++
Sbjct: 782 LVNEQVQSFNLRLKCMNIKVSE---LTGDVNLSTKELDDSQIIVMTPEKFDVISRKWNEK 838
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAM 105
+ +I LI+ DE H+LNE RG +LE +++++ + ++ M
Sbjct: 839 ILLHKIKLIIFDEIHLLNE-MRGNVLESIIARINRYMDNTMVYDM 882
Score = 42 (19.8 bits), Expect = 4.5e-18, Sum P(3) = 4.5e-18
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 655 NLI-SAAKLHFITKMDKVEA---MKNLIQNLQKNYDN 687
NLI S + I KMD VE KN+I N N N
Sbjct: 1959 NLIMSILNIDMI-KMDNVEDDNNKKNIIHNNNNNNSN 1994
>UNIPROTKB|Q8IFP1 [details] [associations]
symbol:PFD1060w "U5 small nuclear
ribonucleoprotein-specific protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 236 (88.1 bits), Expect = 4.5e-18, Sum P(3) = 4.5e-18
Identities = 92/312 (29%), Positives = 154/312 (49%)
Query: 97 KKSIQIFAMSATIGNINALSTFIE-----GITYVENS-RPTK-HSEYVTVDKRVFQSFDG 149
+K I++ +SAT+ N + F+ GI Y ++S RP + Y+ + ++
Sbjct: 964 RKKIRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHYIGIKEK------- 1016
Query: 150 KSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKE 209
K + + YA L LT + VL G +LIF S+ + +L DRF +
Sbjct: 1017 KGIKK-YA--LMNELTY---EKVLEEA-GKNQILIFVHSRKETYRTS-KLLIDRFMKSDN 1068
Query: 210 YKKQ--EKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQ 267
K +K+ E L E + ++ L+E + +G HHA L +R+L+E+ + +Q
Sbjct: 1069 LSKFLIDKKISSEILLSEKEHVINEELKEILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQ 1128
Query: 268 IICCTSTLAAGVNLPAQRVIIRDSYVGR----DFISLNMYK--QMVGRAGRTGLQESGES 321
++ CTSTLA G+NLPA VII+ + V DF L+ QMVGR+GR +SG++
Sbjct: 1129 VLVCTSTLAWGINLPAHTVIIKGTSVYNINIGDFDELSSMDVLQMVGRSGRPQYDKSGKA 1188
Query: 322 IMLC--KTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLI-LEVVAANLCSSLEDVKTLIK 378
I++ K +Q +L ++ E H +V++I E+V N+ +++D ++
Sbjct: 1189 IIITDHKNLQLYLSLNNEQ-LFIESTLLH----NIVNIINAEIVLKNI-QNMDDAMNWLE 1242
Query: 379 HTLFY--QLKSP 388
HT Y LK P
Sbjct: 1243 HTYMYIRMLKCP 1254
Score = 89 (36.4 bits), Expect = 4.5e-18, Sum P(3) = 4.5e-18
Identities = 25/105 (23%), Positives = 52/105 (49%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V+E+ QS + + E + G + ++L+ I + T EK + ++
Sbjct: 782 LVNEQVQSFNLRLKCMNIKVSE---LTGDVNLSTKELDDSQIIVMTPEKFDVISRKWNEK 838
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAM 105
+ +I LI+ DE H+LNE RG +LE +++++ + ++ M
Sbjct: 839 ILLHKIKLIIFDEIHLLNE-MRGNVLESIIARINRYMDNTMVYDM 882
Score = 42 (19.8 bits), Expect = 4.5e-18, Sum P(3) = 4.5e-18
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 655 NLI-SAAKLHFITKMDKVEA---MKNLIQNLQKNYDN 687
NLI S + I KMD VE KN+I N N N
Sbjct: 1959 NLIMSILNIDMI-KMDNVEDDNNKKNIIHNNNNNNSN 1994
>SGD|S000003503 [details] [associations]
symbol:SLH1 "Putative RNA helicase related to Ski2p"
species:4932 "Saccharomyces cerevisiae" [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA;IGI;IMP] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042788 "polysomal ribosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0002181
"cytoplasmic translation" evidence=IGI] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 SGD:S000003503 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 EMBL:BK006941 GO:GO:0003676 GO:GO:0051607
GO:GO:0002181 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003724 KO:K02201
RefSeq:NP_011793.3 GeneID:853194 KEGG:sce:YGR277C OMA:RKPTGEG
OrthoDB:EOG4H75KM RefSeq:NP_011787.4 GeneID:853187 KEGG:sce:YGR271W
EMBL:U35242 EMBL:Z73056 PIR:S64604 DIP:DIP-5563N IntAct:P53327
MINT:MINT-516762 STRING:P53327 PaxDb:P53327 PeptideAtlas:P53327
EnsemblFungi:YGR271W CYGD:YGR271w NextBio:973332
Genevestigator:P53327 GermOnline:YGR271W Uniprot:P53327
Length = 1967
Score = 258 (95.9 bits), Expect = 5.6e-18, P = 5.6e-18
Identities = 157/677 (23%), Positives = 288/677 (42%)
Query: 4 EKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENR- 62
E +K F + E + G TK ++ + + T EK + +N
Sbjct: 361 EIVDKFSKKLAPFNIQVRE---LTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDL 417
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKS----IQIFAMSATIGNINALSTF 118
+ ++ L++IDE H+L+E RG ++E +V++ L +S I+I +SAT+ N ++ F
Sbjct: 418 VSKVKLLIIDEVHLLHE-DRGSVIETLVARTLRQVESSQSMIRIIGLSATLPNFMDVADF 476
Query: 119 IE-----GITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVL 173
+ G+ Y + S K E + R GK+ + +N+D D +
Sbjct: 477 LGVNRQIGMFYFDQSFRPKPLEQQLLGCR------GKAGSRQSKENIDKVAY----DKLS 526
Query: 174 HLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTN 233
++Q V++F S+ A F + + D IE K++ L N
Sbjct: 527 EMIQRGYQVMVFVHSRKETVKSARN--FIKLAESNHEVDLFAPDPIE--KDKYSRSLVKN 582
Query: 234 ----LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR 289
++E +G HHA + +R L E+ + G ++++CCT+TLA GVNLPA VII+
Sbjct: 583 RDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIK 642
Query: 290 -----DSYVGRDFISLNMYK--QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGP 342
DS G FI L + Q+ GR GR G + + +LC T D L +
Sbjct: 643 GTQVYDSKKG-GFIDLGISDVIQIFGRGGRPGFGSANGTGILC-TSNDRLDHYVSLITQQ 700
Query: 343 EPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQL-KSPEDQQTFLETTLSE 401
PI S + +L E+ ++ + E ++ L +F ++ K+P E ++
Sbjct: 701 HPIESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMFVRMRKNPFTYGIDWEEIAND 760
Query: 402 IVASLLASKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCL-IIYSDLLHNKLNFCLLNS 460
L + M+ + A L A+Q + +V + I DL +F LLN
Sbjct: 761 --PQLYERRRKMIVV-AARRLH-------ALQMIVFDEVSMHFIAKDLGRVSSDFYLLNE 810
Query: 461 LHMLFLVIPLEYRIPSDGI-LLSRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL 519
+F + +D + ++S S +D KF + + + L ++ V + +L
Sbjct: 811 SVEIFNQMCDPRATEADVLSMISMSSEFDGI-KFREEESKELKRL--SDESVECQIGSQL 867
Query: 520 KDEK-KA--LLCRFFHACILYD-VLNFDNHQKVAKMYGIQNSHLQNFLNVT-SYFASKVY 574
+ KA LL + ++D L+ D++ I + +N F++ +
Sbjct: 868 DTPQGKANVLLQAYISQTRIFDSALSSDSNYVAQNSVRICRALFLIGVNRRWGKFSNVML 927
Query: 575 RFCEELPE-LWCYKQLLT--DLPQTLMY-CR--APNLRALMDLPGVKIGRARQLLNAGYS 628
C+ + + LW + L DLP+ ++ R P++ L++L ++G AG
Sbjct: 928 NICKSIEKRLWAFDHPLCQFDLPENIIRRIRDTKPSMEHLLELEADELGELVHNKKAGSR 987
Query: 629 SLELIARADAKEMVAKI 645
++++R + A+I
Sbjct: 988 LYKILSRFPKINIEAEI 1004
Score = 160 (61.4 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 51/175 (29%), Positives = 84/175 (48%)
Query: 214 EKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTS 273
++E+L L + D L +L+ +G+ HHA L +R + + + +QI+ TS
Sbjct: 1407 DEEELQYYLSQVTDDTLKLSLQ----FGIGLHHAGLVQKDRSISHQLFQKNKIQILIATS 1462
Query: 274 TLAAGVNLPAQRVIIR-----DSYV-GRDFISLNMYKQMVGRAGRTGLQESGESIMLCKT 327
TLA GVNLPA VII+ D+ + G + L QM+GRAGR +G +I+ K
Sbjct: 1463 TLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTKE 1522
Query: 328 MQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLF 382
+ + +N G P+ S + L E+ + ++ + E + L LF
Sbjct: 1523 SKKMF-YKHFLNVG-FPVESSLHKVLDDHLGAEITSGSITNKQEALDFLSWTFLF 1575
Score = 110 (43.8 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G P + ++ +I I T EK + + + ++ LI++DE H+L RGPILE
Sbjct: 1222 GDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEIHLLAS-DRGPILE 1280
Query: 88 CVVSKVLYL----KKSIQIFAMSATIGN 111
+VS++ Y+ K+ +++ MS + N
Sbjct: 1281 MIVSRMNYISSQTKQPVRLLGMSTAVSN 1308
Score = 37 (18.1 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 187 SSKIACSNLALRLQFDRFPGTK 208
S K + LA+ F FPG K
Sbjct: 1166 SGKTIVAELAIWHAFKTFPGKK 1187
>UNIPROTKB|F1S4E9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:CU179709
Ensembl:ENSSSCT00000007570 Uniprot:F1S4E9
Length = 1438
Score = 256 (95.2 bits), Expect = 6.2e-18, Sum P(2) = 6.2e-18
Identities = 99/377 (26%), Positives = 176/377 (46%)
Query: 36 QLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSK--- 92
++ I + T EK + + + + L +IDE H++ + RGP LE VVS+
Sbjct: 377 EIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRGPTLEVVVSRMKT 436
Query: 93 VLYLKKSIQ---------IFAMSATIGNINALSTFI-EGI-TYVENSRPTKHSEYVTVDK 141
V +L +++ A+SATI N ++ ++ +G + + KH V + K
Sbjct: 437 VQFLSHAVENPRNIIPMRFVAVSATIPNAEDIAEWLSDGERSAICLKMDEKHRP-VKLRK 495
Query: 142 RVFQSFDGKSLTEIYAD-NLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQ 200
V + TE D L+Y + +V+ L+FC+++ A L
Sbjct: 496 VVLGFPCSNNQTEFKFDLTLNYKIA-----SVVQTYSDQKPTLVFCATRKGVQQAASILV 550
Query: 201 FD-RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEE 259
D +F T E +K+ L + D KL + +++GVAYHHA + +R+++E
Sbjct: 551 KDAKFIMTVE----QKQRLHKCAYSIRDSKL----RDLLIHGVAYHHAGMELSDRKVVEG 602
Query: 260 AYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGL 315
A+ G L ++ TSTLA GVNLPA V+I+ + Y G F S QM+GRAGR
Sbjct: 603 AFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQF 662
Query: 316 QESGESIMLCK--TMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDV 373
+ ++++ + T + +++ + + + H+ +++L + ++ +LE
Sbjct: 663 DTTATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTIT-DVNIALE-- 719
Query: 374 KTLIKHTLFY--QLKSP 388
I+ TL Y LK+P
Sbjct: 720 --WIRSTLLYIRALKNP 734
Score = 52 (23.4 bits), Expect = 6.2e-18, Sum P(2) = 6.2e-18
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 604 NLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKI-RHLP 649
+L L + I + ++NAG +S + I DA+E+ + RH P
Sbjct: 928 SLHVSKQLEKIGITLSNAMVNAGLTSFKKIEETDARELELILNRHPP 974
>UNIPROTKB|G4N3Z7 [details] [associations]
symbol:MGG_05900 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003583 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00278 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:CM001233 GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 RefSeq:XP_003711726.1
ProteinModelPortal:G4N3Z7 EnsemblFungi:MGG_05900T0 GeneID:2684075
KEGG:mgr:MGG_05900 Uniprot:G4N3Z7
Length = 1508
Score = 268 (99.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 90/329 (27%), Positives = 161/329 (48%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI 122
+D + L++IDE H L + RG LE ++ ++ +I++ A+SAT+ N ++ ++ G
Sbjct: 374 LDLVQLVLIDEVHFLKDT-RGATLEVLICRMKTQVSNIRVVALSATVPNSEDVAKWL-GR 431
Query: 123 TYVENSRPTKHSEY------VTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLV 176
+N +P + + V + K V+ + + + LD L V+
Sbjct: 432 GNTDNHQPARLETFGEEFRPVRLQKHVYGLHCSGNAFQ-FEPQLDTKLC-----EVITTH 485
Query: 177 QGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEE 236
+++FC ++ +C A +L + + KK + +K NDG L++
Sbjct: 486 SQKKPIIVFCFTRKSCELTAKKLS-QLWISMADDKKPWPGPG-QNMKVTNDG-----LQQ 538
Query: 237 CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRD 296
+ GVA+HHA L +R +E+AYL G L +ICCTSTL+ GVNLP VI++ + +D
Sbjct: 539 VMQQGVAFHHAGLEQQDRLAVEKAYLEGKLHVICCTSTLSVGVNLPCHTVILKGTMGFQD 598
Query: 297 -----FISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDP 351
+ L + QM+GRAGR S +I+L ++ + R+ +M + G + + S +
Sbjct: 599 GKLLEYSDLEVV-QMLGRAGRPQFDNSAVAIILTRS-ETKARYEAMAS-GTQVLESTLHH 655
Query: 352 PTLVDLILEVVAANLCSSLEDVKTLIKHT 380
+ L E+ + SL+ K +K T
Sbjct: 656 NLIHHLNSEICLGTI-RSLDSAKEWLKST 683
Score = 37 (18.1 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 608 LMDLPGVKIGRARQLLNAGYSSLELIARAD 637
L+ +PG+ R+L G +++ + AD
Sbjct: 902 LLQVPGIGPVSMRKLTTHGITNMASLREAD 931
>UNIPROTKB|A6NGI5 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00973
GO:GO:0008026 EMBL:BX323048 EMBL:AC098691 HGNC:HGNC:20193
HOGENOM:HOG000293238 HOVERGEN:HBG103774 ChiTaRS:HFM1
IPI:IPI00852573 ProteinModelPortal:A6NGI5 STRING:A6NGI5
Ensembl:ENST00000370424 ArrayExpress:A6NGI5 Bgee:A6NGI5
Uniprot:A6NGI5
Length = 1114
Score = 243 (90.6 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
Identities = 99/375 (26%), Positives = 175/375 (46%)
Query: 36 QLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLY 95
++ I + T EK + + + + L +IDE H++ + RGP LE VVS++
Sbjct: 54 EIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKT 113
Query: 96 -------LKKS-----IQIFAMSATIGNINALSTFI-EGITYVENSRPTKHSEYVTVDKR 142
LK + ++ A+SATI N ++ ++ +G + + V + K
Sbjct: 114 VQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKV 173
Query: 143 VFQSFDGKSLTEIYAD-NLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQF 201
V + TE D L+Y + +V+ + L+FC+++ A L
Sbjct: 174 VLGFPCSSNQTEFKFDLTLNYKIA-----SVIQMYSDQKPTLVFCATRKGVQQAASVLVK 228
Query: 202 D-RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEA 260
D +F T E +KQ + +++ D KL L++ G AYHHA + +R+++E A
Sbjct: 229 DAKFIMTVE-QKQRLQKYAYSVR---DSKLRDILKD----GAAYHHAGMELSDRKVVEGA 280
Query: 261 YLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQ 316
+ G L ++ TSTLA GVNLPA V+I+ + Y G F S QM+GRAGR
Sbjct: 281 FTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRPQFD 340
Query: 317 ESGESIMLCK-TMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKT 375
+ ++++ + + +D ++ M+ A + + S + + L E+V + + +
Sbjct: 341 TTATAVIMTRLSTRD--KYIQML-ACRDTVESSLHRHLIEHLNAEIVLHTI-TDVNIAVE 396
Query: 376 LIKHTLFY--QLKSP 388
I+ TL Y LK+P
Sbjct: 397 WIRSTLLYIRALKNP 411
Score = 52 (23.4 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 604 NLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKI-RHLP 649
+L L + I + ++NAG +S + I DA+E+ + RH P
Sbjct: 606 SLHVSKQLEKIGITLSNAIVNAGLTSFKKIEETDARELELILNRHPP 652
>UNIPROTKB|A2PYH4 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0008026 KO:K15271
EMBL:AB204867 EMBL:AK094079 EMBL:BX323048 EMBL:AC098691
IPI:IPI00374013 IPI:IPI00852603 RefSeq:NP_001017975.3
UniGene:Hs.454818 ProteinModelPortal:A2PYH4 SMR:A2PYH4
STRING:A2PYH4 PhosphoSite:A2PYH4 PaxDb:A2PYH4 PRIDE:A2PYH4
Ensembl:ENST00000294696 Ensembl:ENST00000370425 GeneID:164045
KEGG:hsa:164045 UCSC:uc001doa.4 CTD:164045 GeneCards:GC01M091726
HGNC:HGNC:20193 HPA:HPA035557 neXtProt:NX_A2PYH4
PharmGKB:PA142671690 HOGENOM:HOG000293238 HOVERGEN:HBG103774
InParanoid:A2PYH4 OMA:EADEMKS OrthoDB:EOG44XJHC ChiTaRS:HFM1
GenomeRNAi:164045 NextBio:88429 ArrayExpress:A2PYH4 Bgee:A2PYH4
CleanEx:HS_HFM1 Genevestigator:A2PYH4 Uniprot:A2PYH4
Length = 1435
Score = 243 (90.6 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 99/375 (26%), Positives = 175/375 (46%)
Query: 36 QLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLY 95
++ I + T EK + + + + L +IDE H++ + RGP LE VVS++
Sbjct: 375 EIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKT 434
Query: 96 -------LKKS-----IQIFAMSATIGNINALSTFI-EGITYVENSRPTKHSEYVTVDKR 142
LK + ++ A+SATI N ++ ++ +G + + V + K
Sbjct: 435 VQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKV 494
Query: 143 VFQSFDGKSLTEIYAD-NLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQF 201
V + TE D L+Y + +V+ + L+FC+++ A L
Sbjct: 495 VLGFPCSSNQTEFKFDLTLNYKIA-----SVIQMYSDQKPTLVFCATRKGVQQAASVLVK 549
Query: 202 D-RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEA 260
D +F T E +KQ + +++ D KL L++ G AYHHA + +R+++E A
Sbjct: 550 DAKFIMTVE-QKQRLQKYAYSVR---DSKLRDILKD----GAAYHHAGMELSDRKVVEGA 601
Query: 261 YLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQ 316
+ G L ++ TSTLA GVNLPA V+I+ + Y G F S QM+GRAGR
Sbjct: 602 FTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRPQFD 661
Query: 317 ESGESIMLCK-TMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKT 375
+ ++++ + + +D ++ M+ A + + S + + L E+V + + +
Sbjct: 662 TTATAVIMTRLSTRD--KYIQML-ACRDTVESSLHRHLIEHLNAEIVLHTI-TDVNIAVE 717
Query: 376 LIKHTLFY--QLKSP 388
I+ TL Y LK+P
Sbjct: 718 WIRSTLLYIRALKNP 732
Score = 52 (23.4 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 604 NLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKI-RHLP 649
+L L + I + ++NAG +S + I DA+E+ + RH P
Sbjct: 927 SLHVSKQLEKIGITLSNAIVNAGLTSFKKIEETDARELELILNRHPP 973
>UNIPROTKB|D4A2B2 [details] [associations]
symbol:Polq "Protein Polq" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR019760
Pfam:PF00270 Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00482 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0008026 GO:GO:0003887 IPI:IPI00391259
ProteinModelPortal:D4A2B2 Ensembl:ENSRNOT00000034851 Uniprot:D4A2B2
Length = 2261
Score = 207 (77.9 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 90/366 (24%), Positives = 167/366 (45%)
Query: 319 GESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPP-----TLVDLILEVVAANLCSSLEDV 373
GESI++CK + + +++ EP+ S + T++ ILE++ + + S+ +D+
Sbjct: 212 GESILVCKNSEKS-KGIALLQGSLEPVHSCLQSQGEVTSTMIRAILEIIVSGVASTSQDM 270
Query: 374 KTLIKHTLFYQLKSPEDQQTFLETTLSEIVASLLASKGTMLTMNE---AGHLS------- 423
+T T F E +Q ++ ++ + + T L NE A S
Sbjct: 271 QTYAACT-FLAADVKEGKQG-IQRNRDDVQRGAVDACVTWLLENEFIQAAEPSDGTGGKV 328
Query: 424 --LTSIAKAAVQAGLSHDVCLIIYSDLLHNKLNFCLLNSLHMLFLVIPLEYRIPSDGILL 481
T + A + + LS L I++DL F L N LH+++LV P + D +
Sbjct: 329 YHPTHLGSATLSSSLSPTDTLDIFADLQRAMKGFVLENDLHIVYLVTP----VFEDWTSI 384
Query: 482 SRSKVYDRYTKFHPQTLRVAEALGVTENLVALNVTGKL--KDEKK----ALLCR--FFHA 533
+ + + K RVAE +GV E +A V GK+ + E++ A+ R FF +
Sbjct: 385 DWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVARTERQHRQMAIHKRQAFFTS 444
Query: 534 CILYDVLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLL-TD 592
+L D+++ +++ + YG +Q+ + +A + F L W +LL +
Sbjct: 445 LVLLDLISEIPLKEINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLG--WHNMELLLSQ 502
Query: 593 LPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRH-LPLR 651
+ L + L L+ + + RAR L +G+ ++ +ARAD E+ A ++ LP +
Sbjct: 503 FQKRLTFGIQRELCDLIRVSSLNAQRARFLYASGFLTVADLARADTVEVEAALKDALPFK 562
Query: 652 SARNLI 657
SAR +
Sbjct: 563 SARKAV 568
Score = 90 (36.7 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 13 AEEFKFYLE---EYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRID 64
A+E K+YL+ + G+K G PT R + + +CTIE+ + LI LI+EN++D
Sbjct: 151 AKEKKYYLQSLFQEVGIKVDGYMGSTSPTGR-FSSLDVAVCTIERANGLINRLIEENKMD 209
Query: 65 EIG 67
+G
Sbjct: 210 LLG 212
Score = 39 (18.8 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 203 RFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGV 242
R GT K++ +D I+ L N G LE+ +GV
Sbjct: 51 RLAGTGTCKQRVSDDQIDQLLLANWGLPKAVLEKYHNFGV 90
>SGD|S000003220 [details] [associations]
symbol:HFM1 "Meiosis specific DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0007129 "synapsis" evidence=IGI;IMP]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0007126
"meiosis" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 SGD:S000003220 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0046872 GO:GO:0003677 EMBL:X94357
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0007131 GO:GO:0008026 GO:GO:0007129
GO:GO:0006268 KO:K15271 EMBL:Z72773 EMBL:U22156 RefSeq:NP_011263.2
ProteinModelPortal:P51979 SMR:P51979 DIP:DIP-2604N IntAct:P51979
MINT:MINT-426642 STRING:P51979 PaxDb:P51979 PeptideAtlas:P51979
EnsemblFungi:YGL251C GeneID:852641 KEGG:sce:YGL251C CYGD:YGL251c
GeneTree:ENSGT00550000074822 HOGENOM:HOG000093662 OMA:GNYECNH
OrthoDB:EOG4WWVSR NextBio:971894 Genevestigator:P51979
GermOnline:YGL251C Uniprot:P51979
Length = 1187
Score = 238 (88.8 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 89/358 (24%), Positives = 176/358 (49%)
Query: 39 KKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKK 98
K +I I T EK L +R+ E+ +V+ + + +RG LE +++++ + +
Sbjct: 234 KCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGASLEVILTRMNTMCQ 293
Query: 99 SIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEI--- 155
+I+ A+SAT+ NI L+ +++ N P + ++ D +S+ LT+
Sbjct: 294 NIRFVALSATVPNIEDLALWLK----TNNELP---ANILSFD----ESYRQVQLTKFVYG 342
Query: 156 YADNL--DYSLTGSGPDAVLHLVQ---GNLMVLIFCSSKIACSNLALRLQFDRFPGTKEY 210
Y+ N D+ ++ +++ N VLIFC ++ + + A L + +
Sbjct: 343 YSFNCKNDFQKDAIYNSKLIEIIEKHADNRPVLIFCPTRASTISTAKFLLNNHI-----F 397
Query: 211 KKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIIC 270
K +K K+ L EC+ G+A+HHA ++ +R +E+ +LAG++ I+C
Sbjct: 398 SKSKKR-----CNHNPSDKI---LNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILC 449
Query: 271 CTSTLAAGVNLPAQRVIIR-----DSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLC 325
TSTLA GVNLPA VII+ +S +++ L++ QM+GRAGR + G ++++
Sbjct: 450 STSTLAVGVNLPAYLVIIKGTKSWNSSEIQEYSDLDVL-QMIGRAGRPQFETHGCAVIMT 508
Query: 326 KTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFY 383
+ + ++++ G + + S + L++ + + S+E +++T FY
Sbjct: 509 DSKMK-QTYENLIH-GTDVLESSLHL-NLIEHLAAETSLETVYSIETAVNWLRNTFFY 563
>ASPGD|ASPL0000044033 [details] [associations]
symbol:AN2482 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:BN001307 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 OMA:FPGKHYC InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GO:GO:0008026 OrthoDB:EOG4H75KM
EMBL:AACD01000041 RefSeq:XP_660086.1 ProteinModelPortal:Q5BAE8
EnsemblFungi:CADANIAT00009203 GeneID:2875191 KEGG:ani:AN2482.2
Uniprot:Q5BAE8
Length = 2015
Score = 206 (77.6 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 95/378 (25%), Positives = 174/378 (46%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENR-IDEIGLIVIDEFHMLNEPQRGPIL 86
G TKR++ + I + T EK + + + ++ L++IDE HML++ +RG ++
Sbjct: 385 GDMQLTKREIVETQIIVTTPEKWDVVTRKSTGDTELVQKVRLLIIDEVHMLHD-ERGAVI 443
Query: 87 ECVVSKVLYLKKS----IQIFAMSATIGNINALSTFIE-----GITYVENS-RPTKHSEY 136
E +V++ +S I+I +SAT+ N ++ F++ G+ + ++S RP ++
Sbjct: 444 ESLVARTQRQVESTQSLIRIVGLSATLPNYVDVADFLKVNKMAGLFFFDSSFRPVPLEQH 503
Query: 137 VTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLA 196
F GK ++ DN+D ++T + V +++ V++F S+ A
Sbjct: 504 -------FIGVKGKPGSKQSRDNID-TVTF---EKVRDMLERGHQVMVFVHSRKDTVLTA 552
Query: 197 LRL-QFDRFPGTKE-YKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGER 254
L Q G + + E E+ AL++ + + L + G HHA ++ +R
Sbjct: 553 RMLKQMAVQDGCEALFSCHEHENYSNALRDMKHAR-ARELRDLFASGFGTHHAGMSRSDR 611
Query: 255 RLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRD--FISLNMYK--QMVG 308
L+E TLA GVNLPA V+I+ + Y ++ F+ L + Q+ G
Sbjct: 612 NLMEP--------------TLAWGVNLPAAAVVIKGTQLYNPQEGKFVDLGILDVLQIFG 657
Query: 309 RAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCS 368
RAGR Q++G +C T + S + + +PI S + +L E+ + S
Sbjct: 658 RAGRPQFQDTGIGF-ICTTHDKLNHYLSAVTS-QQPIESRFSSRLVDNLNAEIALGTVTS 715
Query: 369 SLEDVKTLIKHTLFYQLK 386
E V+ L LF ++K
Sbjct: 716 ISEGVQWLGYSYLFVRMK 733
Score = 163 (62.4 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 59/210 (28%), Positives = 96/210 (45%)
Query: 208 KEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQ 267
+ + + ++DL L+ D L E + +G+ HHA L +R+L EE + +Q
Sbjct: 1392 RRFVRMSEDDLQLNLERVKDDAL----REALSFGIGLHHAGLVESDRQLAEELFANNKIQ 1447
Query: 268 IICCTSTLAAGVNLPAQRVIIRDSYV------GRDFISLNMYKQMVGRAGRTGLQESGES 321
I+ TSTLA GVNLPA V+++ + G + L QM+GRAGR SG +
Sbjct: 1448 ILVATSTLAWGVNLPAHLVVVKGTQFFDAKTEGYKDMDLTDVLQMLGRAGRPQFDSSGIA 1507
Query: 322 IMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLE--DVKT---- 375
+ + + + ++ G P+ S + L EV A + + + D T
Sbjct: 1508 RIFTQDSKKAF-YKHFLHTG-FPVESTLHKVLDNHLGAEVSAGTIATKQDALDYLTWTFF 1565
Query: 376 ---LIKHTLFYQLKSPEDQQTFLET-TLSE 401
L K+ +Y L+ DQ LE TL++
Sbjct: 1566 FRRLHKNPSYYGLEISADQHNSLEAQTLAQ 1595
Score = 128 (50.1 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 28 GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILE 87
G P R + I I T EK + S + + ++ L++IDE H+L RGPILE
Sbjct: 1215 GDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYVRKVSLVIIDEIHLLGG-DRGPILE 1273
Query: 88 CVVSKVLYL----KKSIQIFAMSATIGNINALSTFI---EGITYVENS-RPTKHSEYV 137
+VS++ Y+ K S+++ MS N + L+ ++ EG+ +S RP Y+
Sbjct: 1274 IIVSRMNYIASQSKGSVRLMGMSTACANASDLANWLGVKEGLYNFRHSVRPVPLEIYI 1331
>TAIR|locus:2020573 [details] [associations]
symbol:EMB25 "EMBRYO DEFECTIVE 25" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=IMP] [GO:0010497 "plasmodesmata-mediated intercellular
transport" evidence=NAS;IMP] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0016441 "posttranscriptional gene silencing"
evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0016556 "mRNA modification" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0009570 GO:GO:0003676
GO:GO:0009793 GO:GO:0031047 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0008026 EMBL:AC002062
GO:GO:0003724 GO:GO:0010497 eggNOG:COG4581 GO:GO:0016441
HOGENOM:HOG000245391 EMBL:AK316759 EMBL:AF387007 IPI:IPI00538730
PIR:D96723 RefSeq:NP_177164.1 UniGene:At.35348
ProteinModelPortal:B9DFG3 SMR:B9DFG3 PaxDb:B9DFG3 PRIDE:B9DFG3
EnsemblPlants:AT1G70070.1 GeneID:843343 KEGG:ath:AT1G70070
GeneFarm:2280 TAIR:At1g70070 InParanoid:Q94EZ6 OMA:PSYGMVL
PhylomeDB:B9DFG3 ProtClustDB:CLSN2682754 Genevestigator:B9DFG3
Uniprot:B9DFG3
Length = 1171
Score = 183 (69.5 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 54/201 (26%), Positives = 98/201 (48%)
Query: 170 DAVLHLVQGNLMVLI-FCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDG 228
D + HL N++ I F ++ C + A++ + F + +K E E ++ +
Sbjct: 427 DTLWHLQGKNMLPAIWFIFNRRGC-DAAVQY-VENFQLLDDCEKSEVELALKKFRVLYPD 484
Query: 229 KLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVII 288
+ + E+ +L G+A HHA + IEE + G ++++ T TLAAG+N+PA+ +I
Sbjct: 485 AVRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVI 544
Query: 289 RD--SYVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEP 344
G + I L N QM GRAGR G+ E G ++++ + ++ AG +P
Sbjct: 545 SSLSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKP 604
Query: 345 ISSHMDPPTLVDLILEVVAAN 365
+ S ++L +VA +
Sbjct: 605 LVSQFTAS--YGMVLNLVAGS 623
Score = 94 (38.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 29/102 (28%), Positives = 50/102 (49%)
Query: 66 IGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI---EGI 122
+ IV+DE H L++ RG + E +V +Y K +Q+ +SAT+ N + L+ +I G
Sbjct: 269 VDAIVLDEVHYLSDISRGTVWEEIV---IYCPKEVQLICLSATVANPDELAGWIGEIHGK 325
Query: 123 TYVENS--RPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDY 162
T + S RP + Y + + D K + +L+Y
Sbjct: 326 TELVTSTRRPVPLTWYFSTKHSLLPLLDEKGINVNRKLSLNY 367
>UNIPROTKB|Q10701 [details] [associations]
symbol:helY "Probable helicase HelY" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842578 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:G70767 RefSeq:NP_216608.1 RefSeq:NP_336620.1
RefSeq:YP_006515507.1 ProteinModelPortal:Q10701 SMR:Q10701
PRIDE:Q10701 EnsemblBacteria:EBMYCT00000003887
EnsemblBacteria:EBMYCT00000069683 GeneID:13316898 GeneID:887736
GeneID:924573 KEGG:mtc:MT2153 KEGG:mtu:Rv2092c KEGG:mtv:RVBD_2092c
PATRIC:18126496 TubercuList:Rv2092c HOGENOM:HOG000245391 KO:K03727
OMA:ANESAWQ ProtClustDB:CLSK791623 Uniprot:Q10701
Length = 906
Score = 159 (61.0 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 44/166 (26%), Positives = 78/166 (46%)
Query: 169 PDAVLHL-VQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIE-ALKEEN 226
P+ + L +G L + F S+ C + T E ++ ++I+ +
Sbjct: 261 PEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLA 320
Query: 227 DGKLST----NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLP 282
D L+ E +L G+A HHA + R +EE + AG ++ + T TLA G+N+P
Sbjct: 321 DSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMP 380
Query: 283 AQRVIIRD--SYVGRDFISLNM--YKQMVGRAGRTGLQESGESIML 324
A+ V++ + G + L Y Q+ GRAGR G+ G ++++
Sbjct: 381 ARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVI 426
Score = 112 (44.5 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 66 IGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI--- 122
+ +V+DE H L + RGP+ E V+ L L +++ ++SAT+ N +I+ +
Sbjct: 126 LSYVVMDEVHFLADRMRGPVWEEVI---LQLPDDVRVVSLSATVSNAEEFGGWIQTVRGD 182
Query: 123 --TYVENSRPTKHSEYVTVDKRVFQSFD 148
V+ RP ++V V KR+F FD
Sbjct: 183 TTVVVDEHRPVPLWQHVLVGKRMFDLFD 210
>GENEDB_PFALCIPARUM|PF14_0370 [details] [associations]
symbol:PF14_0370 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0004004 KO:K01509
RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 219 (82.2 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 92/353 (26%), Positives = 163/353 (46%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEK------GSKLI 54
+V E K + F + EY +Y + ++L + I + EK S
Sbjct: 516 LVFEITNLFRKKLKIFNLNVCEYTK---EYSLSSKELEQVHIIVTVPEKLDILLRNSSYS 572
Query: 55 GSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQ----IFAMSATIG 110
++ E+ I I +++DE H+LN RG ++E +VS+ L ++ Q I AMSAT+
Sbjct: 573 TTVSDESLIKYIKCLILDEVHLLNT-DRGDVIETIVSRFLQYSETSQSIRRIMAMSATLP 631
Query: 111 NINALSTFIEGITYVENSRPTKHSE-Y--VTVDKRVFQSFDGKSLTEIY-ADNLDYSLTG 166
N + F++ VEN +E Y + +DK ++ + + ++Y A N+ Y+
Sbjct: 632 NYKDVRDFLK----VENDMCYYFNEKYRSIQLDKTLYGIHEENN-NKLYIAKNI-YTY-- 683
Query: 167 SGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEEN 226
+ +++ ++ + +IF S+ +N + + K E E + + +N
Sbjct: 684 ---NEIINSLKKDKQCIIFVCSRNE-TNKTIEFLINH-----ALKNNEIEYFVNNVYTDN 734
Query: 227 DGKL----STNL--EECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVN 280
D K S NL ++ YG HHA ++ ++ L+E + ++CCTSTLA GVN
Sbjct: 735 DIKKKIKKSNNLYIKQFYEYGCTIHHAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGVN 794
Query: 281 LPAQRVIIR-----DSYVGR----DFISLNMYKQMVGRAGRTGLQESGESIML 324
LP VII+ S G+ D + +N Q+ GR GR + G +I++
Sbjct: 795 LPVHTVIIKGTNYFSSESGKLEDMDILDIN---QIFGRCGRPQYESHGHAILI 844
Score = 165 (63.1 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 58/215 (26%), Positives = 108/215 (50%)
Query: 185 FCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLST-NLEECILYGVA 243
FC ++I NL F +K ++E++++ L + + +L+E + YG+
Sbjct: 1765 FCDNEIYDYNLL-------FNNSK-LSEEERKNVANILFQNYLNLIENEHLKEILKYGIG 1816
Query: 244 YHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNM- 302
HHA L ++ ++E +L +QI+ CTSTLA G+NLPA VII+ G +F
Sbjct: 1817 IHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAYLVIIK----GNEFYDAKTK 1872
Query: 303 -YK--------QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPT 353
YK QM+GRAGR + +I+L +Q+ R +++ N P++ +
Sbjct: 1873 KYKDIPYTDLLQMIGRAGRPQFDDKALAILL---VQE-KRKNAIKNFLYHPMNIESN--- 1925
Query: 354 LVDLILEVVAANLCSSL----EDVKTLIKHTLFYQ 384
+++ E + A +CS++ ED+ + + +++
Sbjct: 1926 IMENFNEHINAEICSNVINNKEDIFNYLTKSYYFK 1960
Score = 115 (45.5 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 32/125 (25%), Positives = 64/125 (51%)
Query: 1 MVHEKYQSL-AKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQ 59
+V+E+Y+S +K F + E G K + K + + +I ICT EK + +
Sbjct: 1428 IVNERYKSWKSKFKSLFNKNVIELTGDKNE---NKENIAESNIIICTPEKLDVITRNWKN 1484
Query: 60 ENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLY----LKKSIQIFAMSATIGNINAL 115
+ + I LI+ DE H+L + RG ++E +V++ L K I++ ++ I +++ L
Sbjct: 1485 KKFVKNINLIIFDEIHLLGQENRGGVIEILVNRFKNMQNELNKKIRLIGLTTVITSVDDL 1544
Query: 116 STFIE 120
+++
Sbjct: 1545 ILWLD 1549
Score = 39 (18.8 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 672 EAMKNLIQNLQKNYDNIVHN 691
E KN+ L +NY N++ N
Sbjct: 1785 EERKNVANILFQNYLNLIEN 1804
Score = 37 (18.1 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 673 AMKNLIQNLQKNYDNIVHNT 692
A ++ N+ KN N++ NT
Sbjct: 1063 AYYDICLNILKNISNLIMNT 1082
>UNIPROTKB|Q8IL78 [details] [associations]
symbol:PF14_0370 "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0004004
KO:K01509 RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 219 (82.2 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 92/353 (26%), Positives = 163/353 (46%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEK------GSKLI 54
+V E K + F + EY +Y + ++L + I + EK S
Sbjct: 516 LVFEITNLFRKKLKIFNLNVCEYTK---EYSLSSKELEQVHIIVTVPEKLDILLRNSSYS 572
Query: 55 GSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQ----IFAMSATIG 110
++ E+ I I +++DE H+LN RG ++E +VS+ L ++ Q I AMSAT+
Sbjct: 573 TTVSDESLIKYIKCLILDEVHLLNT-DRGDVIETIVSRFLQYSETSQSIRRIMAMSATLP 631
Query: 111 NINALSTFIEGITYVENSRPTKHSE-Y--VTVDKRVFQSFDGKSLTEIY-ADNLDYSLTG 166
N + F++ VEN +E Y + +DK ++ + + ++Y A N+ Y+
Sbjct: 632 NYKDVRDFLK----VENDMCYYFNEKYRSIQLDKTLYGIHEENN-NKLYIAKNI-YTY-- 683
Query: 167 SGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEEN 226
+ +++ ++ + +IF S+ +N + + K E E + + +N
Sbjct: 684 ---NEIINSLKKDKQCIIFVCSRNE-TNKTIEFLINH-----ALKNNEIEYFVNNVYTDN 734
Query: 227 DGKL----STNL--EECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVN 280
D K S NL ++ YG HHA ++ ++ L+E + ++CCTSTLA GVN
Sbjct: 735 DIKKKIKKSNNLYIKQFYEYGCTIHHAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGVN 794
Query: 281 LPAQRVIIR-----DSYVGR----DFISLNMYKQMVGRAGRTGLQESGESIML 324
LP VII+ S G+ D + +N Q+ GR GR + G +I++
Sbjct: 795 LPVHTVIIKGTNYFSSESGKLEDMDILDIN---QIFGRCGRPQYESHGHAILI 844
Score = 165 (63.1 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 58/215 (26%), Positives = 108/215 (50%)
Query: 185 FCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLST-NLEECILYGVA 243
FC ++I NL F +K ++E++++ L + + +L+E + YG+
Sbjct: 1765 FCDNEIYDYNLL-------FNNSK-LSEEERKNVANILFQNYLNLIENEHLKEILKYGIG 1816
Query: 244 YHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNM- 302
HHA L ++ ++E +L +QI+ CTSTLA G+NLPA VII+ G +F
Sbjct: 1817 IHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAYLVIIK----GNEFYDAKTK 1872
Query: 303 -YK--------QMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPT 353
YK QM+GRAGR + +I+L +Q+ R +++ N P++ +
Sbjct: 1873 KYKDIPYTDLLQMIGRAGRPQFDDKALAILL---VQE-KRKNAIKNFLYHPMNIESN--- 1925
Query: 354 LVDLILEVVAANLCSSL----EDVKTLIKHTLFYQ 384
+++ E + A +CS++ ED+ + + +++
Sbjct: 1926 IMENFNEHINAEICSNVINNKEDIFNYLTKSYYFK 1960
Score = 115 (45.5 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 32/125 (25%), Positives = 64/125 (51%)
Query: 1 MVHEKYQSL-AKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQ 59
+V+E+Y+S +K F + E G K + K + + +I ICT EK + +
Sbjct: 1428 IVNERYKSWKSKFKSLFNKNVIELTGDKNE---NKENIAESNIIICTPEKLDVITRNWKN 1484
Query: 60 ENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLY----LKKSIQIFAMSATIGNINAL 115
+ + I LI+ DE H+L + RG ++E +V++ L K I++ ++ I +++ L
Sbjct: 1485 KKFVKNINLIIFDEIHLLGQENRGGVIEILVNRFKNMQNELNKKIRLIGLTTVITSVDDL 1544
Query: 116 STFIE 120
+++
Sbjct: 1545 ILWLD 1549
Score = 39 (18.8 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 672 EAMKNLIQNLQKNYDNIVHN 691
E KN+ L +NY N++ N
Sbjct: 1785 EERKNVANILFQNYLNLIEN 1804
Score = 37 (18.1 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 673 AMKNLIQNLQKNYDNIVHNT 692
A ++ N+ KN N++ NT
Sbjct: 1063 AYYDICLNILKNISNLIMNT 1082
>UNIPROTKB|H9L351 [details] [associations]
symbol:H9L351 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 GeneTree:ENSGT00640000091272 EMBL:AADN02064073
EMBL:AADN02064074 Ensembl:ENSGALT00000021750
Ensembl:ENSGALT00000036125 Uniprot:H9L351
Length = 254
Score = 190 (71.9 bits), Expect = 7.1e-14, P = 7.1e-14
Identities = 59/179 (32%), Positives = 96/179 (53%)
Query: 220 EALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGV 279
E L+ E + + L++ + YG A HHA +T +R L+E+ + +Q++ T+TLA GV
Sbjct: 20 EVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGV 79
Query: 280 NLPAQRVIIRDSYV-----GR--DFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFL 332
NLPA VII+ + V GR + +L++ QM+GRAGR GE I++ + +
Sbjct: 80 NLPAHTVIIKGTQVYSPEKGRWTELGALDIL-QMLGRAGRPQYDTKGEGILIT-SHGELQ 137
Query: 333 RFSSMMNAGPEPISSHMDPPTLVDLI-LEVVAANLCSSLEDVKTLIKHTLFY--QLKSP 388
+ S++N PI S M L D++ E V N+ + +D + +T Y L+SP
Sbjct: 138 YYLSLLNQ-QLPIESQM-VSKLPDMLNAETVLGNV-QNAKDAVNWLGYTYLYIRMLRSP 193
>GENEDB_PFALCIPARUM|PF14_0234 [details] [associations]
symbol:PF14_0234 "DNA-directed DNA polymerase,
putative" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
RefSeq:XP_001348408.1 ProteinModelPortal:Q8ILK9
EnsemblProtists:PF14_0234:mRNA GeneID:811816 KEGG:pfa:PF14_0234
EuPathDB:PlasmoDB:PF3D7_1425400 HOGENOM:HOG000281276
ProtClustDB:CLSZ2432457 Uniprot:Q8ILK9
Length = 1236
Score = 209 (78.6 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 85/320 (26%), Positives = 145/320 (45%)
Query: 78 NEPQ-RGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEY 136
N+ Q PI C + +K S Q + + + + + + I Y+ + E
Sbjct: 540 NKNQINNPIYSCDNDSISNIKDS-QYLSQNRYV-HTEKKDSLDDHINYILKEKEKLICET 597
Query: 137 VTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACS--- 193
+ D + + K+ + + L+ SL S LH NL LIFC +K C
Sbjct: 598 NSKDS-IMCFLNKKNQNKNKYNTLNTSLINSLLYFALHSYINNLNTLIFCCTKKMCEFYI 656
Query: 194 NLALR-LQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAG 252
NL L + +Y ++++L E + D + + + I G+ Y+++D++
Sbjct: 657 NLINEYLNTLKSLPIPQYIDMKRKELKEKIYNI-DKCIYEKMHKLISNGLCYYYSDISHS 715
Query: 253 ERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGR 312
+RL+E AY TL ++ CTSTL+ G+NL RVII +V ++F++ YKQM+GRA R
Sbjct: 716 VKRLLEVAYKEKTLFLLTCTSTLSVGLNLFVDRVIISSPFVAQNFLTYTQYKQMIGRAAR 775
Query: 313 TGLQESGESIMLCKTMQDFLRFSSMMNAGPEP---ISSHMDPPTLVDL---ILEVVAA-- 364
L++ I + K + M+N E I+S M T +L ++E +
Sbjct: 776 --LKKGDSFIFVDKEYE-----KKMLNIFKETFTNITSTMHANTFEELEKYVIEFLCLYN 828
Query: 365 -NLCSSLEDVKTLIKHTLFY 383
N S DV + +L+Y
Sbjct: 829 ENEYISFYDVIHMFSFSLYY 848
Score = 153 (58.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 34/95 (35%), Positives = 56/95 (58%)
Query: 60 ENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKS---IQIFAMSATIGNINALS 116
EN ++ +++IDEFH +NE RG +E +VSK+LY+ K I+I MS T+ NI+ L
Sbjct: 199 ENLKNDNIIVIIDEFHHINEKGRGIYIENIVSKILYMNKKRSRIKIICMSGTLNNISILK 258
Query: 117 TFIEGITYVENSRPTKHSEYVTVDKRVFQSF-DGK 150
+++ Y+ RP + E+ + V++ DGK
Sbjct: 259 KWMKAKFYISTYRPQEIKEHYVCNFNVYKKVQDGK 293
Score = 55 (24.4 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 32 PTKRQLNKKSIYICTIEKGSKL-IGSLIQENRI 63
P K +N+K Y+ I KG+ + IG I+EN I
Sbjct: 120 PLKSLINEKMTYLKNICKGTNIRIGVEIEENDI 152
>UNIPROTKB|Q8ILK9 [details] [associations]
symbol:PF14_0234 "DNA-directed DNA polymerase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
RefSeq:XP_001348408.1 ProteinModelPortal:Q8ILK9
EnsemblProtists:PF14_0234:mRNA GeneID:811816 KEGG:pfa:PF14_0234
EuPathDB:PlasmoDB:PF3D7_1425400 HOGENOM:HOG000281276
ProtClustDB:CLSZ2432457 Uniprot:Q8ILK9
Length = 1236
Score = 209 (78.6 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 85/320 (26%), Positives = 145/320 (45%)
Query: 78 NEPQ-RGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEY 136
N+ Q PI C + +K S Q + + + + + + I Y+ + E
Sbjct: 540 NKNQINNPIYSCDNDSISNIKDS-QYLSQNRYV-HTEKKDSLDDHINYILKEKEKLICET 597
Query: 137 VTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACS--- 193
+ D + + K+ + + L+ SL S LH NL LIFC +K C
Sbjct: 598 NSKDS-IMCFLNKKNQNKNKYNTLNTSLINSLLYFALHSYINNLNTLIFCCTKKMCEFYI 656
Query: 194 NLALR-LQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAG 252
NL L + +Y ++++L E + D + + + I G+ Y+++D++
Sbjct: 657 NLINEYLNTLKSLPIPQYIDMKRKELKEKIYNI-DKCIYEKMHKLISNGLCYYYSDISHS 715
Query: 253 ERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGR 312
+RL+E AY TL ++ CTSTL+ G+NL RVII +V ++F++ YKQM+GRA R
Sbjct: 716 VKRLLEVAYKEKTLFLLTCTSTLSVGLNLFVDRVIISSPFVAQNFLTYTQYKQMIGRAAR 775
Query: 313 TGLQESGESIMLCKTMQDFLRFSSMMNAGPEP---ISSHMDPPTLVDL---ILEVVAA-- 364
L++ I + K + M+N E I+S M T +L ++E +
Sbjct: 776 --LKKGDSFIFVDKEYE-----KKMLNIFKETFTNITSTMHANTFEELEKYVIEFLCLYN 828
Query: 365 -NLCSSLEDVKTLIKHTLFY 383
N S DV + +L+Y
Sbjct: 829 ENEYISFYDVIHMFSFSLYY 848
Score = 153 (58.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 34/95 (35%), Positives = 56/95 (58%)
Query: 60 ENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKS---IQIFAMSATIGNINALS 116
EN ++ +++IDEFH +NE RG +E +VSK+LY+ K I+I MS T+ NI+ L
Sbjct: 199 ENLKNDNIIVIIDEFHHINEKGRGIYIENIVSKILYMNKKRSRIKIICMSGTLNNISILK 258
Query: 117 TFIEGITYVENSRPTKHSEYVTVDKRVFQSF-DGK 150
+++ Y+ RP + E+ + V++ DGK
Sbjct: 259 KWMKAKFYISTYRPQEIKEHYVCNFNVYKKVQDGK 293
Score = 55 (24.4 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 32 PTKRQLNKKSIYICTIEKGSKL-IGSLIQENRI 63
P K +N+K Y+ I KG+ + IG I+EN I
Sbjct: 120 PLKSLINEKMTYLKNICKGTNIRIGVEIEENDI 152
>POMBASE|SPAC17H9.02 [details] [associations]
symbol:SPAC17H9.02 "TRAMP complex ATP-dependent RNA
helicase (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0016078 "tRNA catabolic
process" evidence=ISO] [GO:0031499 "TRAMP complex" evidence=ISO]
[GO:0043630 "ncRNA polyadenylation involved in
polyadenylation-dependent ncRNA catabolic process" evidence=ISO]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17H9.02 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GO:GO:0003676 GO:GO:0031499
GO:GO:0043630 GO:GO:0016078 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 PIR:T37868 RefSeq:NP_593572.1
ProteinModelPortal:O13799 STRING:O13799 EnsemblFungi:SPAC17H9.02.1
GeneID:2542173 KEGG:spo:SPAC17H9.02 OMA:FARWISE NextBio:20803244
Uniprot:O13799
Length = 1030
Score = 192 (72.6 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 67/261 (25%), Positives = 125/261 (47%)
Query: 141 KRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLM--VLIFCSSKIACSNLALR 198
K+V + D + E Y+ + S + ++++V N +++FC SK C A +
Sbjct: 330 KKVLEVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEINAHQ 389
Query: 199 L-QFD-RFPGTKEYKKQEKEDLIEALKEENDG-KLSTNLEECILYGVAYHHADLTAGERR 255
+ D KE + + I L EE+ G + + +L G+ HH+ L +
Sbjct: 390 FGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKE 449
Query: 256 LIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAG 311
L+E + G ++I+ T T + G+N+PA+ V+ + + G +F ++ Y QM GRAG
Sbjct: 450 LVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAG 509
Query: 312 RTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISS--HMDPPTLVDLI-LEVVAANLCS 368
R G+ G SI++ D +MN + ++S H+ +++L+ +E +
Sbjct: 510 RRGIDTKGLSIVILDQSIDEQAARCLMNGQADVLNSAFHLSYGMILNLMRIEEI------ 563
Query: 369 SLEDVKTLIKHTLFYQLKSPE 389
S ED+ +K + FYQ ++ E
Sbjct: 564 SPEDI---LKKS-FYQFQNME 580
Score = 68 (29.0 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 17/74 (22%), Positives = 39/74 (52%)
Query: 51 SKLIGSLIQENR--IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSAT 108
++++ +++ +N + EI ++ DE H + + RG + E ++ L +I+ +SAT
Sbjct: 215 TEILRAMLYKNSEIMHEIAWVIFDEVHYMRDKDRGVVWE---ETLILLPDAIRFIFLSAT 271
Query: 109 IGNINALSTFIEGI 122
+ N + +I I
Sbjct: 272 LPNALQFARWISEI 285
>UNIPROTKB|G3MYJ7 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 EMBL:DAAA02050346 EMBL:DAAA02050343
EMBL:DAAA02050344 EMBL:DAAA02050345 Ensembl:ENSBTAT00000064767
Uniprot:G3MYJ7
Length = 605
Score = 180 (68.4 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 61/207 (29%), Positives = 100/207 (48%)
Query: 168 GPDAVLHLV----QGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKE---DLI 219
GP V +V + N V+IF SK C AL++ F T E KK +E + I
Sbjct: 368 GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDF-NTDEEKKMVEEVFSNAI 426
Query: 220 EALKEENDGKLST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAA 277
+ L +E D KL N+ + G+ HH L + IE + G ++ + T T A
Sbjct: 427 DCLSDE-DKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM 485
Query: 278 GVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR 333
G+N+PA+ V+ ++ + G+DF IS Y QM GRAGR G+ + G I++
Sbjct: 486 GINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI 545
Query: 334 FSSMMNAGPEPISS--HMDPPTLVDLI 358
++ +P++S H+ +++L+
Sbjct: 546 GKQLLKGSADPLNSAFHLTYNMVLNLL 572
Score = 68 (29.0 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI 119
E+ ++ DE H + + +RG + E ++ L ++ +SATI N + +I
Sbjct: 243 EVAWVIFDEIHYMRDSERGVVWE---ETIILLPDNVHYVFLSATIPNARQFAEWI 294
>UNIPROTKB|F1MJX4 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:DAAA02050346 EMBL:DAAA02050343 EMBL:DAAA02050344
EMBL:DAAA02050345 IPI:IPI00839454 Ensembl:ENSBTAT00000047363
Uniprot:F1MJX4
Length = 937
Score = 180 (68.4 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 61/207 (29%), Positives = 100/207 (48%)
Query: 168 GPDAVLHLV----QGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKE---DLI 219
GP V +V + N V+IF SK C AL++ F T E KK +E + I
Sbjct: 368 GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDF-NTDEEKKMVEEVFSNAI 426
Query: 220 EALKEENDGKLST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAA 277
+ L +E D KL N+ + G+ HH L + IE + G ++ + T T A
Sbjct: 427 DCLSDE-DKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM 485
Query: 278 GVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR 333
G+N+PA+ V+ ++ + G+DF IS Y QM GRAGR G+ + G I++
Sbjct: 486 GINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI 545
Query: 334 FSSMMNAGPEPISS--HMDPPTLVDLI 358
++ +P++S H+ +++L+
Sbjct: 546 GKQLLKGSADPLNSAFHLTYNMVLNLL 572
Score = 68 (29.0 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI 119
E+ ++ DE H + + +RG + E ++ L ++ +SATI N + +I
Sbjct: 243 EVAWVIFDEIHYMRDSERGVVWE---ETIILLPDNVHYVFLSATIPNARQFAEWI 294
>MGI|MGI:1919448 [details] [associations]
symbol:Skiv2l2 "superkiller viralicidic activity 2-like 2
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000460 "maturation of 5.8S
rRNA" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919448 GO:GO:0005524
GO:GO:0005730 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 CTD:23517
HOVERGEN:HBG104255 OrthoDB:EOG4D52WW ChiTaRS:SKIV2L2 EMBL:AK012158
EMBL:BC029230 IPI:IPI00113134 RefSeq:NP_082427.1 UniGene:Mm.291029
ProteinModelPortal:Q9CZU3 SMR:Q9CZU3 IntAct:Q9CZU3 STRING:Q9CZU3
PhosphoSite:Q9CZU3 PaxDb:Q9CZU3 PRIDE:Q9CZU3
Ensembl:ENSMUST00000022281 GeneID:72198 KEGG:mmu:72198
UCSC:uc007rws.1 InParanoid:Q9CZU3 NextBio:335677 Bgee:Q9CZU3
Genevestigator:Q9CZU3 GermOnline:ENSMUSG00000016018 Uniprot:Q9CZU3
Length = 1040
Score = 179 (68.1 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 61/207 (29%), Positives = 100/207 (48%)
Query: 168 GPDAVLHLV----QGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKE---DLI 219
GP V +V + N V+IF SK C AL++ F T E KK +E + I
Sbjct: 368 GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDF-NTDEEKKMVEEVFNNAI 426
Query: 220 EALKEENDGKLST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAA 277
+ L +E D KL ++ + G+ HH L + IE + G ++ + T T A
Sbjct: 427 DCLSDE-DKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM 485
Query: 278 GVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR 333
G+N+PA+ V+ ++ Y G+DF IS Y QM GRAGR G+ + G I++
Sbjct: 486 GINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI 545
Query: 334 FSSMMNAGPEPISS--HMDPPTLVDLI 358
++ +P++S H+ +++L+
Sbjct: 546 GKQLLKGSADPLNSAFHLTYNMVLNLL 572
Score = 68 (29.0 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI 119
E+ ++ DE H + + +RG + E ++ L ++ +SATI N + +I
Sbjct: 243 EVAWVIFDEIHYMRDSERGVVWE---ETIILLPDNVHYVFLSATIPNARQFAEWI 294
>UNIPROTKB|F5H7E2 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:18734 ChiTaRS:SKIV2L2 EMBL:AC010480
EMBL:AC020728 IPI:IPI01011073 ProteinModelPortal:F5H7E2 SMR:F5H7E2
Ensembl:ENST00000545714 UCSC:uc011cqi.2 ArrayExpress:F5H7E2
Bgee:F5H7E2 Uniprot:F5H7E2
Length = 941
Score = 175 (66.7 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 60/207 (28%), Positives = 100/207 (48%)
Query: 168 GPDAVLHLV----QGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKE---DLI 219
GP V +V + N V+IF SK C AL++ F T E KK +E + I
Sbjct: 269 GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDF-NTDEEKKMVEEVFSNAI 327
Query: 220 EALKEENDGKLST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAA 277
+ L +E D KL ++ + G+ HH L + IE + G ++ + T T A
Sbjct: 328 DCLSDE-DKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM 386
Query: 278 GVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR 333
G+N+PA+ V+ ++ + G+DF IS Y QM GRAGR G+ + G I++
Sbjct: 387 GINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI 446
Query: 334 FSSMMNAGPEPISS--HMDPPTLVDLI 358
++ +P++S H+ +++L+
Sbjct: 447 GKQLLKGSADPLNSAFHLTYNMVLNLL 473
Score = 68 (29.0 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI 119
E+ ++ DE H + + +RG + E ++ L ++ +SATI N + +I
Sbjct: 144 EVAWVIFDEIHYMRDSERGVVWE---ETIILLPDNVHYVFLSATIPNARQFAEWI 195
>TAIR|locus:2063648 [details] [associations]
symbol:HEN2 "hua enhancer 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0010093
"specification of floral organ identity" evidence=IMP] [GO:0016070
"RNA metabolic process" evidence=TAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0003002 "regionalization" evidence=RCA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=RCA] [GO:0006396 "RNA
processing" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0003676 GO:GO:0010093
GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC005171 GO:GO:0003724 HOGENOM:HOG000163047
KO:K12598 InterPro:IPR025696 Pfam:PF13234 EMBL:BT005794
IPI:IPI00539432 PIR:B84481 RefSeq:NP_565338.1 UniGene:At.20667
ProteinModelPortal:Q9ZVW2 SMR:Q9ZVW2 IntAct:Q9ZVW2 PRIDE:Q9ZVW2
EnsemblPlants:AT2G06990.1 GeneID:815269 KEGG:ath:AT2G06990
TAIR:At2g06990 InParanoid:Q9ZVW2 OMA:TFDRVCD PhylomeDB:Q9ZVW2
ProtClustDB:CLSN2688028 ArrayExpress:Q9ZVW2 Genevestigator:Q9ZVW2
Uniprot:Q9ZVW2
Length = 995
Score = 164 (62.8 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 52/174 (29%), Positives = 81/174 (46%)
Query: 182 VLIFCSSKIACSNLAL---RLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECI 238
V+IF S+ C AL +L F+ KE +Q + ++ L EE+ + L +
Sbjct: 339 VIIFSFSRRECEQHALSMSKLDFNT-DEEKEVVEQVFNNAMQCLNEEDRSLPAIELMLPL 397
Query: 239 LY-GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR--DSYVGR 295
L G+A HH+ L + L+E + G ++ + T T A G+N+PA+ V+ + G
Sbjct: 398 LQRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGD 457
Query: 296 D--FISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISS 347
+I Y QM GRAGR G E G I++ + MM P P+ S
Sbjct: 458 SHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMNTLRDMMLGKPAPLLS 511
Score = 79 (32.9 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI 122
+ E+ ++ DE H + + +RG + E +++L +I++ +SAT+ N + F E I
Sbjct: 185 LKEVAWVIFDEIHYMKDRERGVVWE---ESIIFLPPAIKMVFLSATMSNA---TEFAEWI 238
Query: 123 TYVENSRPTKHSEY 136
Y+ + +P H Y
Sbjct: 239 CYL-HKQPC-HVVY 250
>UNIPROTKB|E2RCI5 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 CTD:23517 EMBL:AAEX03001437
RefSeq:XP_849676.1 Ensembl:ENSCAFT00000010985 GeneID:607950
KEGG:cfa:607950 Uniprot:E2RCI5
Length = 1042
Score = 175 (66.7 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 60/207 (28%), Positives = 100/207 (48%)
Query: 168 GPDAVLHLV----QGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKE---DLI 219
GP V +V + N V+IF SK C AL++ F T E KK +E + I
Sbjct: 370 GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDF-NTDEEKKMVEEVFSNAI 428
Query: 220 EALKEENDGKLST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAA 277
+ L +E D KL ++ + G+ HH L + IE + G ++ + T T A
Sbjct: 429 DCLSDE-DKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM 487
Query: 278 GVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR 333
G+N+PA+ V+ ++ + G+DF IS Y QM GRAGR G+ + G I++
Sbjct: 488 GINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI 547
Query: 334 FSSMMNAGPEPISS--HMDPPTLVDLI 358
++ +P++S H+ +++L+
Sbjct: 548 GKQLLKGSADPLNSAFHLTYNMVLNLL 574
Score = 68 (29.0 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI 119
E+ ++ DE H + + +RG + E ++ L ++ +SATI N + +I
Sbjct: 245 EVAWVIFDEIHYMRDSERGVVWE---ETIILLPDNVHYVFLSATIPNARQFAEWI 296
>UNIPROTKB|P42285 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:D29641
EMBL:BX640789 EMBL:BC014669 EMBL:BC028604 EMBL:BC031779
EMBL:BC065258 EMBL:BC104996 EMBL:BC113509 IPI:IPI00647217
RefSeq:NP_056175.3 UniGene:Hs.274531 ProteinModelPortal:P42285
SMR:P42285 IntAct:P42285 STRING:P42285 PhosphoSite:P42285
DMDM:71153172 SWISS-2DPAGE:P42285 PaxDb:P42285 PeptideAtlas:P42285
PRIDE:P42285 DNASU:23517 Ensembl:ENST00000230640 GeneID:23517
KEGG:hsa:23517 UCSC:uc003jpy.4 CTD:23517 GeneCards:GC05P054605
HGNC:HGNC:18734 HPA:HPA037379 neXtProt:NX_P42285
PharmGKB:PA134901921 HOVERGEN:HBG104255 InParanoid:P42285
OrthoDB:EOG4D52WW PhylomeDB:P42285 ChiTaRS:SKIV2L2 GenomeRNAi:23517
NextBio:45957 ArrayExpress:P42285 Bgee:P42285 CleanEx:HS_SKIV2L2
Genevestigator:P42285 GermOnline:ENSG00000039123 Uniprot:P42285
Length = 1042
Score = 175 (66.7 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 60/207 (28%), Positives = 100/207 (48%)
Query: 168 GPDAVLHLV----QGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKE---DLI 219
GP V +V + N V+IF SK C AL++ F T E KK +E + I
Sbjct: 370 GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDF-NTDEEKKMVEEVFSNAI 428
Query: 220 EALKEENDGKLST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAA 277
+ L +E D KL ++ + G+ HH L + IE + G ++ + T T A
Sbjct: 429 DCLSDE-DKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM 487
Query: 278 GVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR 333
G+N+PA+ V+ ++ + G+DF IS Y QM GRAGR G+ + G I++
Sbjct: 488 GINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI 547
Query: 334 FSSMMNAGPEPISS--HMDPPTLVDLI 358
++ +P++S H+ +++L+
Sbjct: 548 GKQLLKGSADPLNSAFHLTYNMVLNLL 574
Score = 68 (29.0 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI 119
E+ ++ DE H + + +RG + E ++ L ++ +SATI N + +I
Sbjct: 245 EVAWVIFDEIHYMRDSERGVVWE---ETIILLPDNVHYVFLSATIPNARQFAEWI 296
>UNIPROTKB|F1SLL6 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:FP236391 EMBL:CU929534 Ensembl:ENSSSCT00000018417
Uniprot:F1SLL6
Length = 1046
Score = 175 (66.7 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 60/207 (28%), Positives = 100/207 (48%)
Query: 168 GPDAVLHLV----QGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKE---DLI 219
GP V +V + N V+IF SK C AL++ F T E KK +E + I
Sbjct: 371 GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDF-NTDEEKKMVEEVFSNAI 429
Query: 220 EALKEENDGKLST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAA 277
+ L +E D KL ++ + G+ HH L + IE + G ++ + T T A
Sbjct: 430 DCLSDE-DKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM 488
Query: 278 GVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR 333
G+N+PA+ V+ ++ + G+DF IS Y QM GRAGR G+ + G I++
Sbjct: 489 GINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI 548
Query: 334 FSSMMNAGPEPISS--HMDPPTLVDLI 358
++ +P++S H+ +++L+
Sbjct: 549 GKQLLKGSADPLNSAFHLTYNMVLNLL 575
Score = 68 (29.0 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI 119
E+ ++ DE H + + +RG + E ++ L ++ +SATI N + +I
Sbjct: 246 EVAWVIFDEIHYMRDSERGVVWE---ETIILLPDNVHYVFLSATIPNARQFAEWI 297
>POMBASE|SPCC550.03c [details] [associations]
symbol:SPCC550.03c "Ski complex RNA helicase Ski2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0055087 "Ski complex" evidence=ISO]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
[GO:2000765 "regulation of cytoplasmic translation" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC550.03c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:2000765
EMBL:CU329672 GO:GO:0071276 GO:GO:0071585 GO:GO:0003723
GO:GO:0006402 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003724 eggNOG:COG4581 GO:GO:0055087 PIR:T41378
RefSeq:NP_588095.1 ProteinModelPortal:O59801 STRING:O59801
EnsemblFungi:SPCC550.03c.1 GeneID:2538841 KEGG:spo:SPCC550.03c
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
NextBio:20800023 Uniprot:O59801
Length = 1213
Score = 160 (61.4 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 67/247 (27%), Positives = 114/247 (46%)
Query: 174 HLVQGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEK---EDLIEALKEENDGK 229
HL + NL+ V++F SK C L +R + K + E + LK+E D
Sbjct: 544 HLHKQNLLPVIVFVFSKKRCEEYVDTLT-NRDLNNHQEKSEVHVVIEKAVARLKKE-DRL 601
Query: 230 LST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVI 287
L + E + G+A HH L + ++E + G ++++ T T A GVN+PA+ V+
Sbjct: 602 LPQIGRMREMLSRGLAVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVV 661
Query: 288 IRDS--YVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCKT-MQDFLRFSSMMNAGP 342
+ + GR+F L Y Q GRAGR GL +G I+L ++ + D M+ GP
Sbjct: 662 FSGTQKHDGRNFRDLLPGEYTQCSGRAGRRGLDVTGTVIILSRSELPDTASLRHMI-MGP 720
Query: 343 EP--ISSHMDPPTLVDLILEVVAANLCSSLE-DVKTLIKHTLFYQ----LKSPEDQQTFL 395
IS ++ +L V + ++ + TL Q +KS E++ + L
Sbjct: 721 SSKLISQFRLTYNMILNLLRVETLRIEDMIKRSFSENVNQTLVPQHEEKIKSFEEKLSAL 780
Query: 396 ETTLSEI 402
+ +S++
Sbjct: 781 KKEMSDV 787
Score = 85 (35.0 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 26/103 (25%), Positives = 51/103 (49%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI 122
I ++ ++ DE H +N+ +RG + E V+ + L + + +SAT+ N ++++ G
Sbjct: 384 IRDVEFVIFDEVHYVNDLERGVVWEEVI---IMLPPHVTLILLSATVPNTKEFASWV-GR 439
Query: 123 TYVEN-------SRPTKHSEYVTVDKRVFQSFD--GKSLTEIY 156
T +N RP Y+ V + +F+ D G+ L + Y
Sbjct: 440 TKKKNIYVISTLKRPVPLEHYLWVKQNMFKIVDQHGRFLMDGY 482
>UNIPROTKB|I3LAA7 [details] [associations]
symbol:I3LAA7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026
Ensembl:ENSSSCT00000023674 OMA:ENDQDET Uniprot:I3LAA7
Length = 268
Score = 178 (67.7 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 70/267 (26%), Positives = 126/267 (47%)
Query: 14 EEFKFYLEEYAGVK-----GQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGL 68
+++K +EE G K G P + + K + + T EK + S N + ++ +
Sbjct: 2 DDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTI 61
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYL----KKSIQIFAMSATIGNINALSTFIEGITY 124
++IDE H+L E +RGP+LE +VS+ ++ +K ++I +S + N L+ ++ I
Sbjct: 62 LIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLN-IRQ 119
Query: 125 VE--NSRPTKHSEYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMV 182
+ N RP+ V ++ + Q F G+ Y + S+ A+ V
Sbjct: 120 MGLFNFRPSVRP--VPLEVHI-QGFPGQH----YCPRMA-SMNKPTFQAIRSHSPAK-PV 170
Query: 183 LIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKL-STNLEECILYG 241
LIF SS+ AL L F T+E KQ ++ E E G + +NL+ + +G
Sbjct: 171 LIFVSSRRQTRLTALELI--AFLATEEDPKQWL-NMDEREMENIIGTIRDSNLKLTLAFG 227
Query: 242 VAYHHADLTAGERRLIEEAYLAGTLQI 268
+ HHA L +R+ +EE ++ +Q+
Sbjct: 228 IGMHHAGLHERDRKTVEELFVNCKVQV 254
>FB|FBgn0039117 [details] [associations]
symbol:tst "twister" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 EMBL:AJ276896
ProteinModelPortal:Q9BI21 SMR:Q9BI21 STRING:Q9BI21 PaxDb:Q9BI21
PRIDE:Q9BI21 FlyBase:FBgn0039117 InParanoid:Q9BI21
OrthoDB:EOG46HDRK ArrayExpress:Q9BI21 Bgee:Q9BI21 Uniprot:Q9BI21
Length = 1197
Score = 164 (62.8 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 83/349 (23%), Positives = 159/349 (45%)
Query: 175 LVQGNLM-VLIFCSSKIAC-SNLALRLQFDRFPGTKEYKKQEKEDLIEALKEEN--DGKL 230
L + N+M V+ F S+ C SNLA D T++ K ++ ++ L + D +
Sbjct: 511 LRRSNMMPVVAFTLSRNRCDSNLAALQSVDL--NTEKEKGAVQKFFLQCLAKLKPPDRTI 568
Query: 231 STNL--EECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVII 288
L ++ + G+ HH+ + + ++E + G ++++ T T A GVN+PA R ++
Sbjct: 569 PQVLVLKDALERGIGVHHSGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPA-RTVV 627
Query: 289 RDSYVGRDFISL-NM----YKQMVGRAGRTGLQESGESIMLCK-TMQDFLRFSSMMNAGP 342
DS D + + N+ Y QM GRAGR G E+G +I++CK ++ + M+ P
Sbjct: 628 FDSCKKFDGLEMRNLKPGEYIQMAGRAGRRGHDETGTAIIMCKGSVPPSMELRPMILGLP 687
Query: 343 EPISSHMD---PPTLVDLILEVVAAN--LCSSLEDVKTLIK-HTLFYQLKSPEDQQTFLE 396
E + S L L +E + + S ++ ++ T QL+ ED+ L
Sbjct: 688 EKLQSQFILRYAVILTCLRIESIKVEDIMKFSFKEFNLKLQLPTQQKQLRLAEDKFAMLP 747
Query: 397 TTLSEIVASLLASKGTMLTMNEAGHLSLTSIA-KAAVQAGLSHDVCLIIYSDLLHNKLNF 455
T L E + L+ + + H + + + +Q L ++I +NKL
Sbjct: 748 T-LGEHLQPLVNFYDKAVEYWKEKHRIMKFVVTQPKIQKELKAGRVIVITQGKHYNKLAI 806
Query: 456 CLLNSLHM-----LFLVIPLEYRIPS-DGILLSRSKVYDRYTKFHPQTL 498
LLN+ + ++ V+ L+++ + D L + ++Y + P+ +
Sbjct: 807 -LLNTKSVPGKDTIYKVLVLDHQFKAKDSNSLQQGELYYKILSLTPRNM 854
Score = 80 (33.2 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI 119
++ DE H +N P+RG + E V+ + L + + I +SAT+ N L+ ++
Sbjct: 372 VIFDEVHYINNPERGHVWEEVI---ILLPEHVNIIMLSATVPNTLELADWV 419
>UNIPROTKB|F1MAH7 [details] [associations]
symbol:F1MAH7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 IPI:IPI00372914 PRIDE:F1MAH7
Ensembl:ENSRNOT00000013683 ArrayExpress:F1MAH7 Uniprot:F1MAH7
Length = 1046
Score = 174 (66.3 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 57/171 (33%), Positives = 86/171 (50%)
Query: 168 GPDAVLHLV----QGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKE---DLI 219
GP V +V + N V+IF SK C AL++ F T E KK +E + I
Sbjct: 370 GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDF-NTDEEKKMVEEVFNNAI 428
Query: 220 EALKEENDGKLST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAA 277
+ L +E D KL ++ + G+ HH L + IE + G ++ + T T A
Sbjct: 429 DCLSDE-DKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM 487
Query: 278 GVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQESGESIML 324
G+N+PA+ V+ ++ Y G+DF IS Y QM GRAGR G+ + G I++
Sbjct: 488 GINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILM 538
Score = 68 (29.0 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI 119
E+ ++ DE H + + +RG + E ++ L ++ +SATI N + +I
Sbjct: 245 EVAWVIFDEIHYMRDSERGVVWE---ETIILLPDNVHYVFLSATIPNARQFAEWI 296
>TAIR|locus:2075566 [details] [associations]
symbol:AT3G46960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0005773
"vacuole" evidence=IDA] [GO:0006813 "potassium ion transport"
evidence=IMP] [GO:0035864 "response to potassium ion" evidence=IMP]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005773
EMBL:CP002686 GO:GO:0003676 GO:GO:0006813 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC IPI:IPI00544785
RefSeq:NP_190280.5 UniGene:At.28750 UniGene:At.48743
ProteinModelPortal:F4JAA5 SMR:F4JAA5 PRIDE:F4JAA5
EnsemblPlants:AT3G46960.1 GeneID:823849 KEGG:ath:AT3G46960
GO:GO:0035864 Uniprot:F4JAA5
Length = 1347
Score = 172 (65.6 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 51/161 (31%), Positives = 80/161 (49%)
Query: 180 LMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDL-------IEALKEENDGKLST 232
L V++FC SK C A D GT EK ++ LK +D L
Sbjct: 650 LPVVVFCFSKNYCDRCA-----DALTGTDLTSSSEKSEIRVFCDKAFSRLKG-SDRNLPQ 703
Query: 233 NLE-ECILY-GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRD 290
L + +L+ G+ HHA L + ++E + G ++++ T T A GVN PA R ++ D
Sbjct: 704 VLRLQSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPA-RTVVFD 762
Query: 291 S---YVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCK 326
+ + G++F L Y QM GRAGR GL ++G +++C+
Sbjct: 763 ALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCR 803
Score = 72 (30.4 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI 122
I +I ++ DE H +N+ +RG + E V+ + L + I +SAT+ N + +I G
Sbjct: 463 IRDIEWVIFDEVHYVNDVERGVVWEEVI---IMLPRHINFVLLSATVPNTFEFADWI-GR 518
Query: 123 TYVENSRPT 131
T + R T
Sbjct: 519 TKQKEIRVT 527
>UNIPROTKB|B4E0P5 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001650
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0030529 GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC021188 UniGene:Hs.246112
HGNC:HGNC:30859 ChiTaRS:SNRNP200 EMBL:AK303465 IPI:IPI00927472
SMR:B4E0P5 STRING:B4E0P5 Ensembl:ENST00000429650
HOGENOM:HOG000031250 HOVERGEN:HBG078981 Uniprot:B4E0P5
Length = 595
Score = 184 (69.8 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 54/177 (30%), Positives = 94/177 (53%)
Query: 215 KEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTST 274
++DLI L++ +D ST L+E +L GV Y H L+ ERRL+E+ + +G +Q++ + +
Sbjct: 121 EKDLIPYLEKLSD---ST-LKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRS 176
Query: 275 LAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--QMVGRAGRTGLQESGESIMLCK-T 327
L G+N+ A VII D+ Y G+ ++ +Y QMVG A R + G +++C+ +
Sbjct: 177 LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 236
Query: 328 MQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
+DF F + P P+ SH+D E+V + + +D + T Y+
Sbjct: 237 KKDF--FKKFLYE-PLPVESHLDHCMHDHFNAEIVTKTI-ENKQDAVDYLTWTFLYR 289
>ZFIN|ZDB-GENE-010430-5 [details] [associations]
symbol:skiv2l "superkiller viralicidic activity 2 (S.
cerevisiae homolog)-like" species:7955 "Danio rerio" [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-010430-5 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GeneTree:ENSGT00690000102154 EMBL:FP102194 EMBL:FP067438
IPI:IPI00490616 Ensembl:ENSDART00000089609 OMA:TIMASAD Bgee:F1R881
Uniprot:F1R881
Length = 1249
Score = 162 (62.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 61/237 (25%), Positives = 106/237 (44%)
Query: 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS-- 291
+ + + G+ HH+ + + +IE + G ++++ T T A GVN+PA R ++ DS
Sbjct: 633 MRDLLKRGIGVHHSGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPA-RTVVFDSIR 691
Query: 292 -YVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCKT-MQDFLRFSSMMNAGPEPISS 347
+ G F +L Y QM GRAGR GL +G I+LCK + D SMM P + S
Sbjct: 692 KHDGTGFRNLLPGEYIQMAGRAGRRGLDATGTVIILCKAGVHDMGELHSMMLGKPTVLHS 751
Query: 348 HMDPP-TLVDLILEVVAANLCSSLE-DVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVAS 405
T++ +L V A + ++ + T ++ + E + T +
Sbjct: 752 QFRLTYTMILNLLRVEALRVTDMMKRSFSENHRDTQAHEKRISELRNTLSSLPPLDTEGQ 811
Query: 406 LLASKGTMLTMNEAGHLSLTSIAKAAVQA-----GLSHDVCLIIYSDLLHNKLNFCL 457
L T+ E H++ S+ +A +++ LS +I+ + HN L L
Sbjct: 812 LSDLLSYYHTITEL-HITTQSLQQAVLESVNGLKALSVGRVVIVNNSQHHNSLGVIL 867
Score = 77 (32.2 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 38/138 (27%), Positives = 63/138 (45%)
Query: 36 QLNKK-SIYICTIEKGSKLIGSLIQENR--IDEIGLIVIDEFHMLNEPQRGPILECVVSK 92
QLN + S I T E ++ S++ I ++ ++ DE H +N+ +RG + E V+
Sbjct: 396 QLNPEGSCLIMTTE----ILRSMLYNGSEVIRDLEWVIFDEVHYINDAERGVVWEEVL-- 449
Query: 93 VLYLKKSIQIFAMSATIGNINALSTFIEGIT----YVENS--RPTKHSEYV------TVD 140
+ L + + I +SAT+ N S +I I YV ++ RP Y+
Sbjct: 450 -IMLPEHVSIILLSATVPNAVEFSEWIGRIKKRHIYVISTIKRPVPLEHYLYTGNSTKTQ 508
Query: 141 KRVFQSFD--GKSLTEIY 156
K +F D G LT+ Y
Sbjct: 509 KELFMLLDATGNFLTKGY 526
>ZFIN|ZDB-GENE-040426-2854 [details] [associations]
symbol:skiv2l2 "superkiller viralicidic activity
2-like 2" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0031101 "fin regeneration"
evidence=IMP] [GO:0051781 "positive regulation of cell division"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2854 GO:GO:0005524 GO:GO:0051781 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031101
GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 CTD:23517 HOVERGEN:HBG104255
OrthoDB:EOG4D52WW EMBL:BC061456 IPI:IPI00481753 RefSeq:NP_999933.1
UniGene:Dr.75715 ProteinModelPortal:Q6P7X6 STRING:Q6P7X6
PRIDE:Q6P7X6 GeneID:406795 KEGG:dre:406795 NextBio:20818305
Bgee:Q6P7X6 Uniprot:Q6P7X6
Length = 1034
Score = 171 (65.3 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 61/207 (29%), Positives = 97/207 (46%)
Query: 168 GPDAVLHLV----QGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKE---DLI 219
GP V +V + N V+IF SK C AL++ F T E KK +E +
Sbjct: 363 GPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDF-NTDEEKKLVEEVFNNAT 421
Query: 220 EALKEENDGKLST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAA 277
+ L +E D KL ++ + G+ HH L + IE + G L+ + T T A
Sbjct: 422 DCLSDE-DKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAM 480
Query: 278 GVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR 333
G+N+PA+ V+ + + G+DF IS Y QM GRAGR G+ E G I +
Sbjct: 481 GINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAV 540
Query: 334 FSSMMNAGPEPISS--HMDPPTLVDLI 358
++ +P++S H+ +++L+
Sbjct: 541 GKQLLKGSADPLNSAFHLTYNMVLNLL 567
Score = 65 (27.9 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI 119
E+ ++ DE H + + +RG + E ++ L ++ +SAT+ N + +I
Sbjct: 233 EVAWVIFDEIHYMRDSERGVVWE---ETIILLPDNVHHVFLSATVPNARQFAEWI 284
>UNIPROTKB|F1SU36 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GeneTree:ENSGT00640000091272 EMBL:CU896688
Ensembl:ENSSSCT00000008906 OMA:QSSKKEF Uniprot:F1SU36
Length = 553
Score = 188 (71.2 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 55/177 (31%), Positives = 94/177 (53%)
Query: 215 KEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTST 274
++DLI L++ D ST L+E +L GV Y H L+ ERRL+E+ + +G +Q++ + +
Sbjct: 11 EKDLIPYLEKLGD---ST-LKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRS 66
Query: 275 LAAGVNLPAQRVIIRDS--YVGR--DFISLNMYK--QMVGRAGRTGLQESGESIMLCK-T 327
L G+N+ A VII D+ Y G+ ++ +Y QMVGRA R + G +++C+ +
Sbjct: 67 LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGRANRPLQDDEGRCVIMCQGS 126
Query: 328 MQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQ 384
+DF F + P P+ SH+D E+V + + +D + T Y+
Sbjct: 127 KKDF--FKKFLYE-PLPVESHLDHCMHDHFNAEIVTKTI-ENKQDAVDYLTWTFLYR 179
Score = 39 (18.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 564 NVTSYFASKVYRFCEE 579
N T YF S Y C++
Sbjct: 520 NYTLYFMSDAYMGCDQ 535
>CGD|CAL0002171 [details] [associations]
symbol:orf19.6425 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0055087 "Ski complex" evidence=IEA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IEA] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0002171 GO:GO:0005524 GO:GO:0003676 EMBL:AACQ01000073
EMBL:AACQ01000072 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 KO:K12599 RefSeq:XP_716180.1
RefSeq:XP_716263.1 ProteinModelPortal:Q5A337 STRING:Q5A337
GeneID:3642143 GeneID:3642220 KEGG:cal:CaO19.13783
KEGG:cal:CaO19.6425 Uniprot:Q5A337
Length = 1245
Score = 163 (62.4 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 113/471 (23%), Positives = 200/471 (42%)
Query: 170 DAVLHLVQGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEK--EDLIEALKEEN 226
D V ++ NL+ ++F SK C A L+ F +E + + + LK+E
Sbjct: 569 DLVNYMKSNNLLPAVVFVFSKKRCEEYADSLRSVDFNNAREKSEIHMFIDRAVGRLKKE- 627
Query: 227 DGKLSTNLE--ECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQ 284
D +L L+ E + G+A HH L + IE + ++++ T T A G+NLP +
Sbjct: 628 DRELPQILKIREMLGRGIAVHHGGLLPIVKECIEILFAKSLVKVLFATETFAMGLNLPTR 687
Query: 285 RVIIRD--SYVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR---FSSM 337
VI + GR F +L + QM GRAGR GL ++G I++ D L F +
Sbjct: 688 TVIFSSMRKHDGRSFRNLLPGEFTQMSGRAGRRGLDKTGTVIVMA--YDDPLSPTDFKEV 745
Query: 338 MNAGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFY---QLKSPEDQQTF 394
+ P +SS +IL ++ +L+ V+ +IKH+ Q+ PE+Q+ +
Sbjct: 746 VLGTPTKLSSQFR--LTYSMILNLLRIE---ALK-VEEMIKHSFSENSTQVLLPENQKRY 799
Query: 395 LETTLSEIVASLLA--SKGTMLTMNEAGHLSLTSIAKAAVQAGLSHDVCLIIYSDLLHNK 452
E ++ +S + SK ++ E +L LT + + ++ S LL
Sbjct: 800 DEIK-KQLQSSTITPCSKCSLEGTEETCNL-LTEYENLYGECVVDIHKSPVLKSQLLRVG 857
Query: 453 LNFCLL----NSLHMLFLVIPLEYRIPSDGILL---SRSKVYDR-YTKFHPQTLRVAEAL 504
C N M F+V + ++ I+L K Y+ K+ + + +
Sbjct: 858 RLVCFRDVNHNGARMGFVV---KSDSANNAIVLLTFDHGKDYEEAIEKYKLPYIPIRDY- 913
Query: 505 GVTENLVALNVTGKLKDEKKALLCRFFHACIL--YD----VLNFDNHQKVAKMYGIQNSH 558
+T+N + +G+L+ +L + + C + Y V + N++K A +
Sbjct: 914 -ITKNFPKIKFSGRLR----VVLVPYENICFIGRYSLKTSVNSIINNEKSAVQEA--SEQ 966
Query: 559 LQNFLNVTSYFASKVYRFCEELP--ELWCYK-QLLTDLPQTLMYCRAPNLR 606
+Q + F ++F +L +L K QLL L + Y PN R
Sbjct: 967 IQILTKYQNSFEELAFKFTRQLSLHDLTVEKDQLLEKLKSSKAYV-CPNFR 1016
Score = 72 (30.4 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 35/154 (22%), Positives = 70/154 (45%)
Query: 6 YQSLAKAAEEFKF--YLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENR- 62
Y S KA KF + E + + Q+N ++ C I ++++ S++
Sbjct: 337 YTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEAN--CLIMT-TEILRSMLYRGAD 393
Query: 63 -IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEG 121
I ++ ++ DE H +N+ RG + E V+ + L ++ +SAT+ N + ++ G
Sbjct: 394 LIRDVEFVIFDEVHYVNDIDRGVVWEEVI---IMLPDHVKYILLSATVPNTFEFANWV-G 449
Query: 122 IT-----YVENS--RPTKHSEYVTVDKRVFQSFD 148
T YV ++ RP +V+ ++F+ D
Sbjct: 450 RTKQKDIYVISTPKRPVPLEIFVSAKNQLFKVVD 483
>DICTYBASE|DDB_G0275633 [details] [associations]
symbol:DDB_G0275633 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275633 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_643574.1
ProteinModelPortal:Q86IE2 STRING:Q86IE2 EnsemblProtists:DDB0233453
GeneID:8620161 KEGG:ddi:DDB_G0275633 InParanoid:Q86IE2
ProtClustDB:CLSZ2444279 Uniprot:Q86IE2
Length = 1128
Score = 155 (59.6 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 50/151 (33%), Positives = 75/151 (49%)
Query: 182 VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEK--EDLIEALKEENDGKLST--NLEEC 237
V+IF SK C AL++ F E E + I++L E +D +L N+
Sbjct: 462 VIIFSFSKKECETYALQMSKLDFNNDDEKNAVETIFNNAIDSLSE-SDKQLPAVINILPL 520
Query: 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVI---IRD-SYV 293
+ G+ HHA L + +IE + G ++ + T T + G+N+PA+ VI +R
Sbjct: 521 LKRGIGIHHAGLLPILKEIIEILFQYGYIKALFATETFSIGLNMPAKTVIFTSVRKFDGE 580
Query: 294 GRDFISLNMYKQMVGRAGRTGLQESGESIML 324
G +IS Y QM GRAGR GL E G I++
Sbjct: 581 GMRWISGGEYIQMSGRAGRRGLDERGIVILM 611
Score = 77 (32.2 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI 122
E+ ++ DE H L + +RG + E ++ L S++ +SATI N + +I I
Sbjct: 317 EVSWVIFDEIHYLRDKERGVVWE---ETIILLPDSVKFVFLSATIPNAREFAAWIAKI 371
Score = 40 (19.1 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 13/66 (19%), Positives = 29/66 (43%)
Query: 33 TKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSK 92
+ + LN + + SK+ +N + + L+ +DE N+ Q+G + V+
Sbjct: 60 SNKTLNPNVKPLGALPNNSKIESMDTFKNTVGSVDLMSLDEEIQRNKKQKGGNTKQAVAD 119
Query: 93 VLYLKK 98
+ + K
Sbjct: 120 ISFNAK 125
>WB|WBGene00012342 [details] [associations]
symbol:mtr-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0040011 InterPro:IPR018247
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0040020 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0040022 GO:GO:0008026 eggNOG:COG4581 EMBL:Z70271 PIR:T26282
RefSeq:NP_501757.1 ProteinModelPortal:Q23223 SMR:Q23223
MINT:MINT-6670291 STRING:Q23223 PaxDb:Q23223 EnsemblMetazoa:W08D2.7
GeneID:177824 KEGG:cel:CELE_W08D2.7 CTD:177824 WormBase:W08D2.7
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 InParanoid:Q23223
KO:K12598 OMA:ENFQKAM NextBio:898538 InterPro:IPR025696
Pfam:PF13234 Uniprot:Q23223
Length = 1026
Score = 150 (57.9 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 49/186 (26%), Positives = 85/186 (45%)
Query: 172 VLHLVQGN--LMVLIFCSSKIACSNLALRLQFDRFPGTKE--YKKQEKEDLIEALKEEND 227
++ V N L ++F S+ C + A+ L+ F E K E I L E D
Sbjct: 364 IIRSVASNDGLNCIVFSFSRKECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPE-D 422
Query: 228 GKLST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQR 285
KL N+ + G+ HH+ L + IE + G ++++ T T + G+N+PA+
Sbjct: 423 QKLPQILNILPLLRRGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPART 482
Query: 286 VIIRDS--YVGRD--FISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAG 341
V+ + + G D +I+ Y QM GRAGR G + G I++ + ++
Sbjct: 483 VVFTSARKFDGSDNRYITSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIKGA 542
Query: 342 PEPISS 347
+P++S
Sbjct: 543 TDPLNS 548
Score = 80 (33.2 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI 122
E+G +V DE H + + +RG + E ++ + K+I+ +SATI N + ++ I
Sbjct: 231 EVGWVVYDEIHYMRDKERGVVWE---ETIILMSKNIKQAFLSATIPNARQFAQWVASI 285
>ASPGD|ASPL0000070749 [details] [associations]
symbol:mtr4 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0031499 "TRAMP
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001303
GO:GO:0031499 GO:GO:0043629 GO:GO:0071035 GO:GO:0071038
EMBL:AACD01000076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000467 GO:GO:0071042 GO:GO:0071051 GO:GO:0008143
GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475 GO:GO:0034476
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 OrthoDB:EOG4S1XG7 GO:GO:0071049 RefSeq:XP_662016.1
ProteinModelPortal:Q5B4W8 STRING:Q5B4W8
EnsemblFungi:CADANIAT00006045 GeneID:2872204 KEGG:ani:AN4412.2
Uniprot:Q5B4W8
Length = 1073
Score = 155 (59.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 47/152 (30%), Positives = 77/152 (50%)
Query: 182 VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEK--EDLIEALKEENDGKLST--NLEEC 237
V++F SK C AL+++ F E + K IE L EE D L N+
Sbjct: 413 VIVFSFSKRECEFYALKMKSLAFNDDSEKEMVSKVFNSAIEMLSEE-DRNLPQIQNILPL 471
Query: 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVI---IR--DSY 292
+ G+ HH+ L + IE + G ++++ T T + G+N+PA+ V+ +R D +
Sbjct: 472 LRRGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGF 531
Query: 293 VGRDFISLNMYKQMVGRAGRTGLQESGESIML 324
R +++ + + QM GRAGR GL + G IM+
Sbjct: 532 SQR-WVTPSEFVQMSGRAGRRGLDDRGIVIMM 562
Score = 74 (31.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 32/123 (26%), Positives = 50/123 (40%)
Query: 6 YQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRI-D 64
Y S KA K+ E+A G + C + L L + + I
Sbjct: 200 YTSPIKALSNQKY--REFAAEFGDVGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMR 257
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITY 124
E+ +V DE H + + RG + E ++ L ++ +SATI N A+ F E IT
Sbjct: 258 EVAWVVFDEIHYMRDATRGVVWE---ETIILLPDKVRYVFLSATIPN--AMQ-FAEWITK 311
Query: 125 VEN 127
+ N
Sbjct: 312 MHN 314
>UNIPROTKB|E1BMS0 [details] [associations]
symbol:LOC100139548 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:DAAA02055371 IPI:IPI00690289 RefSeq:XP_003583920.1
RefSeq:XP_003587743.1 Ensembl:ENSBTAT00000007339 GeneID:100139548
KEGG:bta:100139548 Uniprot:E1BMS0
Length = 1246
Score = 161 (61.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 53/181 (29%), Positives = 88/181 (48%)
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS- 291
++ E + G+ HH+ + + ++E + G ++++ T T A GVN+PA R ++ DS
Sbjct: 623 HMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPA-RTVVFDSM 681
Query: 292 --YVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPIS 346
+ G F L Y QM GRAGR GL +G I+LCK + + MM P +
Sbjct: 682 RKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQ 741
Query: 347 SHMDPP-TLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVAS 405
S T++ +L V A + ED ++K + F + S +D + E L+E+
Sbjct: 742 SQFRLTYTMILNLLRVDALRV----ED---MMKRS-FSEFPSRKDSKAH-EQALAELTKK 792
Query: 406 L 406
L
Sbjct: 793 L 793
Score = 69 (29.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN 111
I ++ ++ DE H +N+ +RG + E V+ + L + I +SAT+ N
Sbjct: 414 IRDLEWVIFDEVHYINDAERGVVWEEVL---IMLPDHVSIILLSATVPN 459
>UNIPROTKB|G4MUH1 [details] [associations]
symbol:MGG_07250 "DEAD/DEAH box helicase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM001232
GO:GO:0008026 RefSeq:XP_003715470.1 EnsemblFungi:MGG_07250T0
GeneID:2682996 KEGG:mgr:MGG_07250 Uniprot:G4MUH1
Length = 1771
Score = 177 (67.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 70/249 (28%), Positives = 112/249 (44%)
Query: 211 KKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIIC 270
+K ++EDL E ++ N L E + GV HHA + R+++E G L ++
Sbjct: 1186 RKCQREDLEELIRSLNWVNLDPVFIEALRRGVGVHHAGMNRKYRQVVEMLCRRGFLTVVI 1245
Query: 271 CTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQD 330
T TLA G+N+P + V+ + V F+S Y+Q GRAGR G G + T +
Sbjct: 1246 ATGTLALGINVPCKTVVFSEDSV---FLSALNYRQASGRAGRRGFDLLGNVVFNIPTHRS 1302
Query: 331 FLRFSSMMN--AGPEPISSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSP 388
F SS + G P+S+ + L L L N S++ ++L+ L Y L P
Sbjct: 1303 FEIMSSRLPDLRGQFPVSTTI---VLRTLSLCSHTQNNEFSIQAAQSLLSQNLLY-LGGP 1358
Query: 389 EDQ---QTFLETTLSEIVAS-LLASKGTMLTMNEAG---HLSLTSIAKAA----VQAGLS 437
+ + L ++ + LL+ G L N AG HL T + A ++ G
Sbjct: 1359 AGELAVKHHLRFSIEYLRKQHLLSDSGAPL--NFAGLITHLYFTENSAFAFHSLLKGGYF 1416
Query: 438 HDVCLIIYS 446
H +C +Y+
Sbjct: 1417 HRLCGEVYT 1425
Score = 66 (28.3 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 69 IVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENS 128
I+ DE H + + Q G VV + L L I A+SAT+GN E + ++ S
Sbjct: 844 IIFDEVHCIGQAQEG-----VVWEQLLLLAPCPIIALSATVGNPQ------EFVAWLSES 892
Query: 129 RPTKHSEYVTVDKR 142
+ TK + V+ +
Sbjct: 893 QKTKGHDLELVEHK 906
Score = 44 (20.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 205 PGTKEYKKQEKEDLIE--ALKEENDGKLS 231
PG KE +Q+ D + A+K++ GK++
Sbjct: 519 PGWKEELRQKSSDTAKRLAMKKDTRGKVA 547
Score = 37 (18.1 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 202 DRFPGTKEYKKQEKEDLIEALKE 224
++ TK+ +KQ+K L E + +
Sbjct: 1131 EKIKETKQGRKQDKNGLEEGMSK 1153
>UNIPROTKB|F5H7B0 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 EMBL:AL645922
InterPro:IPR025696 Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L
IPI:IPI01021910 SMR:F5H7B0 Ensembl:ENST00000544581
Ensembl:ENST00000546549 Uniprot:F5H7B0
Length = 1053
Score = 160 (61.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 53/181 (29%), Positives = 88/181 (48%)
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS- 291
++ E + G+ HH+ + + ++E + G ++++ T T A GVN+PA R ++ DS
Sbjct: 430 HMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPA-RTVVFDSM 488
Query: 292 --YVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPIS 346
+ G F L Y QM GRAGR GL +G I+LCK + + MM P +
Sbjct: 489 RKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQ 548
Query: 347 SHMDPP-TLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVAS 405
S T++ +L V A + ED ++K + F + S +D + E L+E+
Sbjct: 549 SQFRLTYTMILNLLRVDALRV----ED---MMKRS-FSEFPSRKDSKAH-EQALAELTKR 599
Query: 406 L 406
L
Sbjct: 600 L 600
Score = 68 (29.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN 111
I ++ ++ DE H +N+ +RG + E V+ + L + I +SAT+ N
Sbjct: 221 IRDLEWVIFDEVHYINDVERGVVWEEVL---IMLPDHVSIILLSATVPN 266
>UNIPROTKB|F8VS23 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00945125
SMR:F8VS23 Ensembl:ENST00000546908 Ensembl:ENST00000552714
Ensembl:ENST00000552746 Ensembl:ENST00000553255 UCSC:uc011ghl.1
Uniprot:F8VS23
Length = 1053
Score = 160 (61.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 53/181 (29%), Positives = 88/181 (48%)
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS- 291
++ E + G+ HH+ + + ++E + G ++++ T T A GVN+PA R ++ DS
Sbjct: 430 HMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPA-RTVVFDSM 488
Query: 292 --YVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPIS 346
+ G F L Y QM GRAGR GL +G I+LCK + + MM P +
Sbjct: 489 RKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQ 548
Query: 347 SHMDPP-TLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVAS 405
S T++ +L V A + ED ++K + F + S +D + E L+E+
Sbjct: 549 SQFRLTYTMILNLLRVDALRV----ED---MMKRS-FSEFPSRKDSKAH-EQALAELTKR 599
Query: 406 L 406
L
Sbjct: 600 L 600
Score = 68 (29.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN 111
I ++ ++ DE H +N+ +RG + E V+ + L + I +SAT+ N
Sbjct: 221 IRDLEWVIFDEVHYINDVERGVVWEEVL---IMLPDHVSIILLSATVPN 266
>WB|WBGene00008502 [details] [associations]
symbol:skih-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 EMBL:Z68341
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC
GeneTree:ENSGT00690000102154 PIR:T20487 RefSeq:NP_502084.2
ProteinModelPortal:Q19103 SMR:Q19103 STRING:Q19103 PaxDb:Q19103
EnsemblMetazoa:F01G4.3 GeneID:178017 KEGG:cel:CELE_F01G4.3
UCSC:F01G4.3 CTD:178017 WormBase:F01G4.3 InParanoid:Q19103
NextBio:899374 Uniprot:Q19103
Length = 1266
Score = 153 (58.9 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 180 LMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKE----DLIEALKEENDGKLST--N 233
L +++F S+ C A L T E +KQ ++ LK +D +L
Sbjct: 563 LPMVVFVFSRKRCDENAQMLASMNL--TTEVEKQHVRLFFSQCVQRLKG-SDKELPQVLT 619
Query: 234 LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV 293
+ + L G A HH+ + + ++E + G ++I+ T T A GVN+PA R ++ DS +
Sbjct: 620 MRDLCLRGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPA-RCVVFDSIM 678
Query: 294 GRDFISLNM-----YKQMVGRAGRTGLQESGESIMLCK 326
D M Y QM GRAGR GL +G I++CK
Sbjct: 679 KHDGTERRMLNPGEYTQMAGRAGRRGLDLTGTVIIICK 716
Score = 74 (31.1 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 31/153 (20%), Positives = 67/153 (43%)
Query: 6 YQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENR--I 63
Y S KA KF ++ + G + C I ++++ S++ I
Sbjct: 340 YTSPIKALSNQKF--RDFKQIFGDVGLVTGDIQLHPEAACLIMT-TEILRSMLYNGSEVI 396
Query: 64 DEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGIT 123
++ +V DE H +N +RG + E V+ + L ++I +SAT+ N + ++ I
Sbjct: 397 RDLEWVVFDEVHYINNEERGHVWEEVL---IMLPAHVKIVMLSATVPNCVEFADWVGRIK 453
Query: 124 YVENSRPTKHSEYVTVDKRVFQSFDGKSLTEIY 156
+ + + V ++ ++ DGK+ +++
Sbjct: 454 NRKINVISTDRRPVPLEHFLYTGQDGKTQKDLF 486
Score = 49 (22.3 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 470 LEYRIPSDGILLSRSKVYDRYTKFHPQTLRVAEALG-VTENLVAL 513
LEY + SD +LLS ++H + L+V EAL V + +V+L
Sbjct: 1060 LEYELSSDALLLSE--------EYHNR-LKVLEALNFVEQKMVSL 1095
Score = 37 (18.1 bits), Expect = 6.9e-06, Sum P(3) = 6.9e-06
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 58 IQENRIDEIGLIVI 71
+ EN IDEI + +I
Sbjct: 227 VSENEIDEIEIPII 240
>UNIPROTKB|B4DM01 [details] [associations]
symbol:SKIV2L "cDNA FLJ57529, highly similar to Helicase
SKI2W (EC 3.6.1.-)" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 eggNOG:COG4581
InterPro:IPR025696 Pfam:PF13234 UniGene:Hs.89864 HGNC:HGNC:10898
HOVERGEN:HBG060025 OrthoDB:EOG47H5P5 ChiTaRS:SKIV2L EMBL:AK297230
IPI:IPI01014021 SMR:B4DM01 STRING:B4DM01 Ensembl:ENST00000551164
Uniprot:B4DM01
Length = 1088
Score = 160 (61.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 53/181 (29%), Positives = 88/181 (48%)
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS- 291
++ E + G+ HH+ + + ++E + G ++++ T T A GVN+PA R ++ DS
Sbjct: 465 HMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPA-RTVVFDSM 523
Query: 292 --YVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPIS 346
+ G F L Y QM GRAGR GL +G I+LCK + + MM P +
Sbjct: 524 RKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQ 583
Query: 347 SHMDPP-TLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVAS 405
S T++ +L V A + ED ++K + F + S +D + E L+E+
Sbjct: 584 SQFRLTYTMILNLLRVDALRV----ED---MMKRS-FSEFPSRKDSKAH-EQALAELTKR 634
Query: 406 L 406
L
Sbjct: 635 L 635
Score = 68 (29.0 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN 111
I ++ ++ DE H +N+ +RG + E V+ + L + I +SAT+ N
Sbjct: 256 IRDLEWVIFDEVHYINDVERGVVWEEVL---IMLPDHVSIILLSATVPN 301
>UNIPROTKB|F8VNU1 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI01022196
SMR:F8VNU1 Ensembl:ENST00000546742 Ensembl:ENST00000547054
Ensembl:ENST00000550012 Ensembl:ENST00000550640 UCSC:uc011ghk.1
Uniprot:F8VNU1
Length = 1088
Score = 160 (61.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 53/181 (29%), Positives = 88/181 (48%)
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS- 291
++ E + G+ HH+ + + ++E + G ++++ T T A GVN+PA R ++ DS
Sbjct: 465 HMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPA-RTVVFDSM 523
Query: 292 --YVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPIS 346
+ G F L Y QM GRAGR GL +G I+LCK + + MM P +
Sbjct: 524 RKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQ 583
Query: 347 SHMDPP-TLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVAS 405
S T++ +L V A + ED ++K + F + S +D + E L+E+
Sbjct: 584 SQFRLTYTMILNLLRVDALRV----ED---MMKRS-FSEFPSRKDSKAH-EQALAELTKR 634
Query: 406 L 406
L
Sbjct: 635 L 635
Score = 68 (29.0 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN 111
I ++ ++ DE H +N+ +RG + E V+ + L + I +SAT+ N
Sbjct: 256 IRDLEWVIFDEVHYINDVERGVVWEEVL---IMLPDHVSIILLSATVPN 301
>UNIPROTKB|F1LP39 [details] [associations]
symbol:Skiv2l "Protein Skiv2l" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 RGD:1303059 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
OMA:TRLDETC GeneTree:ENSGT00690000102154 IPI:IPI00417365
Ensembl:ENSRNOT00000000481 Uniprot:F1LP39
Length = 1206
Score = 158 (60.7 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 52/181 (28%), Positives = 88/181 (48%)
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS- 291
++ E + G+ HH+ + + ++E + G ++++ T T A GVN+PA R ++ DS
Sbjct: 582 HMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPA-RTVVFDSM 640
Query: 292 --YVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPIS 346
+ G F L Y QM GRAGR GL +G I+LCK + + MM P +
Sbjct: 641 RKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQ 700
Query: 347 SHMDPP-TLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVAS 405
S T++ +L V A + ED ++K + F + S +D + E L+++
Sbjct: 701 SQFRLTYTMILNLLRVDALRV----ED---MMKRS-FSEFPSRKDSKAH-EQALADLTKR 751
Query: 406 L 406
L
Sbjct: 752 L 752
Score = 71 (30.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN 111
I ++ ++ DE H +N+ +RG + E V+ + L + + I +SAT+ N
Sbjct: 373 IRDLEWVIFDEVHYINDAERGVVWEEVL---IMLPEHVSIILLSATVPN 418
>UNIPROTKB|F1RQW4 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:CT956038 Ensembl:ENSSSCT00000001566 ArrayExpress:F1RQW4
Uniprot:F1RQW4
Length = 1246
Score = 160 (61.4 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 53/181 (29%), Positives = 88/181 (48%)
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS- 291
++ E + G+ HH+ + + ++E + G ++++ T T A GVN+PA R ++ DS
Sbjct: 623 HMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPA-RTVVFDSM 681
Query: 292 --YVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPIS 346
+ G F L Y QM GRAGR GL +G I+LCK + + MM P +
Sbjct: 682 RKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQ 741
Query: 347 SHMDPP-TLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVAS 405
S T++ +L V A + ED ++K + F + S +D + E L+E+
Sbjct: 742 SQFRLTYTMILNLLRVDALRV----ED---MMKRS-FSEFPSRKDSKAH-EQALAELTKR 792
Query: 406 L 406
L
Sbjct: 793 L 793
Score = 69 (29.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN 111
I ++ ++ DE H +N+ +RG + E V+ + L + I +SAT+ N
Sbjct: 414 IRDLEWVIFDEVHYINDAERGVVWEEVL---IMLPDHVSIILLSATVPN 459
>RGD|1303059 [details] [associations]
symbol:Skiv2l "superkiller viralicidic activity 2-like (S.
cerevisiae )" species:10116 "Rattus norvegicus" [GO:0055087 "Ski
complex" evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
RGD:1303059 GO:GO:0005524 GO:GO:0003676 EMBL:BX883045
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 HOGENOM:HOG000163048
KO:K12599 CTD:6499 HOVERGEN:HBG060025 OrthoDB:EOG47H5P5
IPI:IPI00417365 RefSeq:NP_998724.1 UniGene:Rn.138027
ProteinModelPortal:Q6MG76 IntAct:Q6MG76 PhosphoSite:Q6MG76
PRIDE:Q6MG76 GeneID:294260 KEGG:rno:294260 UCSC:RGD:1303059
InParanoid:Q6MG76 NextBio:637849 ArrayExpress:Q6MG76
Genevestigator:Q6MG76 Uniprot:Q6MG76
Length = 1241
Score = 158 (60.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 52/181 (28%), Positives = 88/181 (48%)
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS- 291
++ E + G+ HH+ + + ++E + G ++++ T T A GVN+PA R ++ DS
Sbjct: 617 HMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPA-RTVVFDSM 675
Query: 292 --YVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPIS 346
+ G F L Y QM GRAGR GL +G I+LCK + + MM P +
Sbjct: 676 RKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQ 735
Query: 347 SHMDPP-TLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVAS 405
S T++ +L V A + ED ++K + F + S +D + E L+++
Sbjct: 736 SQFRLTYTMILNLLRVDALRV----ED---MMKRS-FSEFPSRKDSKAH-EQALADLTKR 786
Query: 406 L 406
L
Sbjct: 787 L 787
Score = 71 (30.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN 111
I ++ ++ DE H +N+ +RG + E V+ + L + + I +SAT+ N
Sbjct: 408 IRDLEWVIFDEVHYINDAERGVVWEEVL---IMLPEHVSIILLSATVPN 453
>UNIPROTKB|D4AE49 [details] [associations]
symbol:D4AE49 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR012961 Pfam:PF00271 Pfam:PF08148 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00690000102230 InterPro:IPR025696 Pfam:PF13234
IPI:IPI00776783 PRIDE:D4AE49 Ensembl:ENSRNOT00000060695
ArrayExpress:D4AE49 Uniprot:D4AE49
Length = 764
Score = 174 (66.3 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 57/171 (33%), Positives = 86/171 (50%)
Query: 168 GPDAVLHLV----QGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKE---DLI 219
GP V +V + N V+IF SK C AL++ F T E KK +E + I
Sbjct: 114 GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDF-NTDEEKKMVEEVFNNAI 172
Query: 220 EALKEENDGKLST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAA 277
+ L +E D KL ++ + G+ HH L + IE + G ++ + T T A
Sbjct: 173 DCLSDE-DKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM 231
Query: 278 GVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQESGESIML 324
G+N+PA+ V+ ++ Y G+DF IS Y QM GRAGR G+ + G I++
Sbjct: 232 GINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILM 282
>CGD|CAL0003794 [details] [associations]
symbol:orf19.1335 species:5476 "Candida albicans" [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0034459 "ATP-dependent
3'-5' RNA helicase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IEA] [GO:0034476
"U5 snRNA 3'-end processing" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0000467 "exonucleolytic trimming
to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0043629 "ncRNA polyadenylation"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003794 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581
EMBL:AACQ01000188 EMBL:AACQ01000187 KO:K12598 InterPro:IPR025696
Pfam:PF13234 RefSeq:XP_711657.1 RefSeq:XP_711675.1
RefSeq:XP_888948.1 STRING:Q59PN6 GeneID:3646717 GeneID:3646739
GeneID:3703907 KEGG:cal:CaO19.1335 KEGG:cal:CaO19.8915
KEGG:cal:CaO19_1335 Uniprot:Q59PN6
Length = 1106
Score = 160 (61.4 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 48/151 (31%), Positives = 78/151 (51%)
Query: 182 VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALK--EENDGKLST--NLEEC 237
V++F SK C +LAL++ F T E + + A++ E D +L N+
Sbjct: 445 VIVFSFSKRDCESLALKMSKLDF-NTDEERNSLTQIFYNAIELLPEADRELPQIKNILPL 503
Query: 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVI---IRD-SYV 293
+ G+ HH+ L + +IE + G L+++ T T + G+N+PA+ V+ +R V
Sbjct: 504 LKRGIGIHHSGLLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGV 563
Query: 294 GRDFISLNMYKQMVGRAGRTGLQESGESIML 324
G ++S Y QM GRAGR GL + G IM+
Sbjct: 564 GFRWVSGGEYIQMSGRAGRRGLDDRGIVIMM 594
Score = 67 (28.6 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITY 124
E+ +V DE H + + RG + E ++ L + +SATI N A+ F E I
Sbjct: 290 EVAWVVFDEVHYMRDKSRGVVWE---ETIILLPDKVHYVFLSATIPN--AME-FAEWIVK 343
Query: 125 VEN 127
+ N
Sbjct: 344 IHN 346
>UNIPROTKB|Q15477 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] Reactome:REACT_17015 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:AF019413 EMBL:AL662849 EMBL:AL645922
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC EMBL:U09877 EMBL:X98378
EMBL:Z48796 IPI:IPI00414819 PIR:S56752 RefSeq:NP_008860.4
UniGene:Hs.89864 ProteinModelPortal:Q15477 SMR:Q15477 IntAct:Q15477
STRING:Q15477 PhosphoSite:Q15477 DMDM:3123284 PaxDb:Q15477
PRIDE:Q15477 DNASU:6499 Ensembl:ENST00000375394
Ensembl:ENST00000383336 Ensembl:ENST00000412823
Ensembl:ENST00000421789 Ensembl:ENST00000429465
Ensembl:ENST00000448219 GeneID:6499 KEGG:hsa:6499 UCSC:uc003nyn.1
CTD:6499 GeneCards:GC06P031926 H-InvDB:HIX0005742
H-InvDB:HIX0166115 H-InvDB:HIX0166390 H-InvDB:HIX0166908
H-InvDB:HIX0167165 H-InvDB:HIX0167404 HGNC:HGNC:10898 MIM:600478
MIM:614602 neXtProt:NX_Q15477 Orphanet:84064 PharmGKB:PA35798
HOVERGEN:HBG060025 InParanoid:Q15477 OrthoDB:EOG47H5P5
PhylomeDB:Q15477 ChiTaRS:SKIV2L GenomeRNAi:6499 NextBio:25263
ArrayExpress:Q15477 Bgee:Q15477 CleanEx:HS_SKIV2L
Genevestigator:Q15477 Uniprot:Q15477
Length = 1246
Score = 160 (61.4 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 53/181 (29%), Positives = 88/181 (48%)
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS- 291
++ E + G+ HH+ + + ++E + G ++++ T T A GVN+PA R ++ DS
Sbjct: 623 HMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPA-RTVVFDSM 681
Query: 292 --YVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPIS 346
+ G F L Y QM GRAGR GL +G I+LCK + + MM P +
Sbjct: 682 RKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQ 741
Query: 347 SHMDPP-TLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVAS 405
S T++ +L V A + ED ++K + F + S +D + E L+E+
Sbjct: 742 SQFRLTYTMILNLLRVDALRV----ED---MMKRS-FSEFPSRKDSKAH-EQALAELTKR 792
Query: 406 L 406
L
Sbjct: 793 L 793
Score = 68 (29.0 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN 111
I ++ ++ DE H +N+ +RG + E V+ + L + I +SAT+ N
Sbjct: 414 IRDLEWVIFDEVHYINDVERGVVWEEVL---IMLPDHVSIILLSATVPN 459
>UNIPROTKB|E2RSD6 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0055087 "Ski complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 KO:K12599 OMA:TRLDETC GeneTree:ENSGT00690000102154
CTD:6499 EMBL:AAEX03008222 RefSeq:XP_538841.2
ProteinModelPortal:E2RSD6 Ensembl:ENSCAFT00000001053 GeneID:481720
KEGG:cfa:481720 NextBio:20856463 Uniprot:E2RSD6
Length = 1246
Score = 159 (61.0 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 53/181 (29%), Positives = 87/181 (48%)
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS- 291
++ E + G+ HH+ + + ++E + G ++++ T T A GVN+PA R ++ DS
Sbjct: 623 HMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPA-RTVVFDSM 681
Query: 292 --YVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPIS 346
+ G F L Y QM GRAGR GL +G I+LCK + + MM P +
Sbjct: 682 RKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQ 741
Query: 347 SHMDPP-TLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVAS 405
S T++ +L V A + ED ++K + F + S +D + E L E+
Sbjct: 742 SQFRLTYTMILNLLRVDALRV----ED---MMKRS-FSEFPSRKDSKAH-EQALDELTKR 792
Query: 406 L 406
L
Sbjct: 793 L 793
Score = 69 (29.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN 111
I ++ ++ DE H +N+ +RG + E V+ + L + I +SAT+ N
Sbjct: 414 IRDLEWVIFDEVHYINDAERGVVWEEVL---IMLPDHVSIILLSATVPN 459
>TAIR|locus:2026001 [details] [associations]
symbol:MTR4 "homolog of yeast MTR4" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0031125 "rRNA 3'-end processing" evidence=IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010074 "maintenance of
meristem identity" evidence=RCA] [GO:0010212 "response to ionizing
radiation" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AC007258 UniGene:At.74832 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0031125 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:AK176836 IPI:IPI00536033 PIR:E96621
RefSeq:NP_176185.1 UniGene:At.43462 ProteinModelPortal:Q9XIF2
SMR:Q9XIF2 PaxDb:Q9XIF2 PRIDE:Q9XIF2 EnsemblPlants:AT1G59760.1
GeneID:842269 KEGG:ath:AT1G59760 TAIR:At1g59760 InParanoid:Q9XIF2
PhylomeDB:Q9XIF2 ProtClustDB:CLSN2679700 ArrayExpress:Q9XIF2
Genevestigator:Q9XIF2 Uniprot:Q9XIF2
Length = 988
Score = 152 (58.6 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 45/175 (25%), Positives = 84/175 (48%)
Query: 182 VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEA---LKEENDGKLS--TNLEE 236
V++F SK C AL +Q + + +K E + + + ++D KL +N+
Sbjct: 323 VILFSFSKKECE--ALAMQMSKMVLNSDDEKDAVETIFASAIDMLSDDDKKLPQVSNILP 380
Query: 237 CILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRD--SYVG 294
+ G+ HH+ L + +IE + G ++ + T T + G+N+PA+ V+ + + G
Sbjct: 381 ILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDG 440
Query: 295 RDF--ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISS 347
F +S Y QM GRAGR G+ + G I++ + SM+ + ++S
Sbjct: 441 DKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKMEPAVAKSMLKGSADSLNS 495
Score = 73 (30.8 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 45/176 (25%), Positives = 72/176 (40%)
Query: 6 YQSLAKAAEEFKF--YLEEYAGVKGQYPPTKRQLNKKSIYICT-IEKGSKLIGSLIQENR 62
Y S KA K+ + EE++ V N + + T I + + GS I
Sbjct: 115 YTSPIKALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMR-- 172
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEG- 121
E+ I+ DE H + + +RG + E S V+ K S +F +SAT+ N + ++
Sbjct: 173 --EVAWIIFDEVHYMRDSERGVVWE--ESIVMAPKNSRFVF-LSATVPNAKEFADWVAKV 227
Query: 122 ------ITYVENSRPTKHSEYV--TVDKRVFQSFDGKSLTEIYADNLDYSLTGSGP 169
I Y + RPT YV ++ D KS + + D+ SL P
Sbjct: 228 HQQPCHIVYTDY-RPTPLQHYVFPAGGNGLYLVVDEKS--KFHEDSFQKSLNALVP 280
>UNIPROTKB|G4NH56 [details] [associations]
symbol:MGG_03931 "FRQ-interacting RNA helicase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0031499 GO:GO:0043629
GO:GO:0071035 GO:GO:0071038 EMBL:CM001236 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000467 GO:GO:0071042
GO:GO:0071051 GO:GO:0008143 GO:GO:0034459 GO:GO:0034475
GO:GO:0034476 KO:K12598 InterPro:IPR025696 Pfam:PF13234
GO:GO:0071049 RefSeq:XP_003719933.1 EnsemblFungi:MGG_03931T0
GeneID:2677161 KEGG:mgr:MGG_03931 Uniprot:G4NH56
Length = 1102
Score = 155 (59.6 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 47/151 (31%), Positives = 74/151 (49%)
Query: 182 VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEK--EDLIEALKEENDGKLST-NLEECI 238
V++F SK C NLAL++ F E K E + I +L EE+ G +L +
Sbjct: 436 VIVFNFSKRECENLALKVSTLNFNHESEQKLVEDIFRNAIMSLSEEDQGLPQIQHLLPLL 495
Query: 239 LYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR-----DSYV 293
G+ HH+ L + IE + ++++ T T + G+N+PA+ V+ D
Sbjct: 496 KKGIGVHHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFSQVKKFDGVK 555
Query: 294 GRDFISLNMYKQMVGRAGRTGLQESGESIML 324
R ++ + Y QM GRAGR GL + G IM+
Sbjct: 556 ERP-LTPSEYIQMSGRAGRRGLDDRGIVIMM 585
Score = 71 (30.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 23/79 (29%), Positives = 37/79 (46%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI-- 122
E+G +V DE H + + RG + E ++ L ++ +SATI N + +I I
Sbjct: 282 EVGWVVFDEIHYMRDATRGVVWE---ETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHR 338
Query: 123 --TYV--ENSRPTKHSEYV 137
+V + RPT YV
Sbjct: 339 QACHVVYTDFRPTPLQNYV 357
>UNIPROTKB|Q8IY21 [details] [associations]
symbol:DDX60 "Probable ATP-dependent RNA helicase DDX60"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0009615 "response to
virus" evidence=IDA] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:1900245 "positive regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AC068989 EMBL:BC007820
EMBL:BC038115 EMBL:AK001649 IPI:IPI00217606 RefSeq:NP_060101.3
UniGene:Hs.591710 ProteinModelPortal:Q8IY21 SMR:Q8IY21
IntAct:Q8IY21 STRING:Q8IY21 PhosphoSite:Q8IY21 DMDM:296439377
PaxDb:Q8IY21 PRIDE:Q8IY21 Ensembl:ENST00000393743 GeneID:55601
KEGG:hsa:55601 UCSC:uc003irp.3 CTD:55601 GeneCards:GC04M169137
HGNC:HGNC:25942 HPA:HPA046952 MIM:613974 neXtProt:NX_Q8IY21
PharmGKB:PA162383444 eggNOG:COG4581 HOGENOM:HOG000169263
HOVERGEN:HBG107797 InParanoid:Q8IY21 OMA:QDCTYAD OrthoDB:EOG4XSKP0
PhylomeDB:Q8IY21 GenomeRNAi:55601 NextBio:60142 ArrayExpress:Q8IY21
Bgee:Q8IY21 CleanEx:HS_DDX60 Genevestigator:Q8IY21 GO:GO:1900245
GO:GO:1900246 Uniprot:Q8IY21
Length = 1712
Score = 177 (67.4 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 78/314 (24%), Positives = 141/314 (44%)
Query: 84 PILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSE--YVTVDK 141
P+L + K+ L +F + A ++STF++ E RP K + +V +K
Sbjct: 1115 PLLVEKLRKMEKLPALFFLFKLGAVENAAESVSTFLK--KKQETKRPPKADKEAHVMANK 1172
Query: 142 --RVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRL 199
+V +S + + + D T + +++H + + +V C K NL +
Sbjct: 1173 LRKVKKSIEKQKII----DEKSQKKTRNVDQSLIHEAEHDNLVK--CLEK----NLEIP- 1221
Query: 200 QFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEE 259
Q + K + + + +K E G+ L E G+ YHH+ ++ E++L+E
Sbjct: 1222 QDCTYADQKAVDTETLQKVFGRVKFERKGEELKALAE---RGIGYHHSAMSFKEKQLVEI 1278
Query: 260 AYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESG 319
+ G L+++ T TLA GVN+P + V+ + V D +LN Y+QM GRAGR G G
Sbjct: 1279 LFRKGYLRVVTATGTLALGVNMPCKSVVFAQNSVYLD--ALN-YRQMSGRAGRRGQDLMG 1335
Query: 320 ESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVA-ANLCSSLEDVK---- 374
+ F + ++ + + H P + L+L ++ A+ ED K
Sbjct: 1336 DVYFFDIP---FPKIGKLIKSNVPELRGHF--PLSITLVLRLMLLASKGDDPEDAKAKVL 1390
Query: 375 TLIKHTLFYQLKSP 388
+++KH+L K P
Sbjct: 1391 SVLKHSLL-SFKQP 1403
>SGD|S000004390 [details] [associations]
symbol:SKI2 "Ski complex component and putative RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA;IPI] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 SGD:S000004390 GO:GO:0005524
GO:GO:0006417 GO:GO:0003677 EMBL:BK006945 GO:GO:0051607
GO:GO:0003723 EMBL:U19729 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z18944 EMBL:L13469 GO:GO:0008026 GO:GO:0003724
GO:GO:0070478 GO:GO:0070481 eggNOG:COG4581 KO:K05544
RefSeq:NP_013505.4 GeneID:851117 KEGG:sce:YLR401C
InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087 HOGENOM:HOG000163048
KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R PIR:S55954
RefSeq:NP_013502.3 PDB:4A4K PDB:4A4Z PDBsum:4A4K PDBsum:4A4Z
ProteinModelPortal:P35207 SMR:P35207 DIP:DIP-5887N IntAct:P35207
MINT:MINT-662639 STRING:P35207 PaxDb:P35207 PeptideAtlas:P35207
EnsemblFungi:YLR398C GeneID:851114 KEGG:sce:YLR398C CYGD:YLR398c
GeneTree:ENSGT00690000102154 NextBio:967830 Genevestigator:P35207
GermOnline:YLR398C Uniprot:P35207
Length = 1287
Score = 153 (58.9 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 53/165 (32%), Positives = 78/165 (47%)
Query: 169 PDAVLHLVQGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEK--EDLIEALKEE 225
P+ V +L + L+ +++F SK C A L+ F KE + E I LK+E
Sbjct: 615 PEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKE 674
Query: 226 NDGKLSTNLEECILY--GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPA 283
D L L+ L G+A HH L + LIE + G ++++ T T A G+NLP
Sbjct: 675 -DRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT 733
Query: 284 QRVIIRD--SYVGRDFISLNM--YKQMVGRAGRTGLQESGESIML 324
+ VI + G L + QM GRAGR GL +G I++
Sbjct: 734 RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVM 778
Score = 74 (31.1 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI 122
I ++ ++ DE H +N+ RG + E V+ + L + ++ +SAT+ N + +I G
Sbjct: 435 IRDVEFVIFDEVHYVNDQDRGVVWEEVI---IMLPQHVKFILLSATVPNTYEFANWI-GR 490
Query: 123 TYVEN 127
T +N
Sbjct: 491 TKQKN 495
>FB|FBgn0001986 [details] [associations]
symbol:l(2)35Df "lethal (2) 35Df" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG4581 GeneTree:ENSGT00690000102230 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:AF145638
RefSeq:NP_524929.1 UniGene:Dm.1748 SMR:Q9Y134 MINT:MINT-942655
STRING:Q9Y134 EnsemblMetazoa:FBtr0080760 GeneID:48782
KEGG:dme:Dmel_CG4152 UCSC:CG4152-RA FlyBase:FBgn0001986
InParanoid:Q9Y134 OrthoDB:EOG4K3JB5 GenomeRNAi:48782 NextBio:839548
Uniprot:Q9Y134
Length = 1055
Score = 152 (58.6 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 47/151 (31%), Positives = 75/151 (49%)
Query: 182 VLIFCSSKIACSNLALRL-QFD-RFPGTKEYKKQEKEDLIEALKEENDGKLST--NLEEC 237
V+IF SK C A+++ + D P K+ + + ++ L EE D +L N+
Sbjct: 405 VIIFSFSKKDCEIYAMQMAKLDFNTPDEKKLVDEVFNNAMDVLTEE-DRRLPQVENVLPL 463
Query: 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRD--SYVGR 295
+ G+ HH L + IE + G ++ + T T A G+N+PA+ V+ + G+
Sbjct: 464 LRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGK 523
Query: 296 DF--ISLNMYKQMVGRAGRTGLQESGESIML 324
F IS Y QM GRAGR GL + G I++
Sbjct: 524 KFRWISSGEYIQMAGRAGRRGLDDKGIVILM 554
Score = 73 (30.8 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI 119
E+G +V DE H + + +RG + E ++ L +++ +SATI N + ++
Sbjct: 257 EVGWVVFDEIHYMRDKERGVVWE---ETLILLPDNVRYVFLSATIPNARQFAEWV 308
>SGD|S000003586 [details] [associations]
symbol:MTR4 "ATP-dependent 3'-5' RNA helicase of the DExD/H
family" species:4932 "Saccharomyces cerevisiae" [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0043629
"ncRNA polyadenylation" evidence=IDA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0071031 "nuclear mRNA surveillance of
mRNA 3'-end processing" evidence=IGI;IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031499 "TRAMP complex" evidence=IDA;IPI] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034459 "ATP-dependent 3'-5' RNA
helicase activity" evidence=IMP;IDA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071049
"nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IGI] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011254 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
SGD:S000003586 GO:GO:0005524 GO:GO:0005730 EMBL:BK006943
GO:GO:0016491 GO:GO:0031499 GO:GO:0043629 GO:GO:0071035
GO:GO:0071038 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
SUPFAM:SSF56821 GO:GO:0000467 GO:GO:0071042 GO:GO:0071051
GO:GO:0008143 GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475
GO:GO:0034476 GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 EMBL:Z49325 PIR:S56822
RefSeq:NP_012485.1 PDB:2XGJ PDB:3L9O PDBsum:2XGJ PDBsum:3L9O
ProteinModelPortal:P47047 SMR:P47047 DIP:DIP-6394N IntAct:P47047
MINT:MINT-620894 STRING:P47047 PaxDb:P47047 PeptideAtlas:P47047
EnsemblFungi:YJL050W GeneID:853397 KEGG:sce:YJL050W CYGD:YJL050w
EvolutionaryTrace:P47047 NextBio:973882 Genevestigator:P47047
GermOnline:YJL050W Uniprot:P47047
Length = 1073
Score = 157 (60.3 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 48/151 (31%), Positives = 76/151 (50%)
Query: 182 VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEK--EDLIEALKEENDGKLST--NLEEC 237
V++F SK C LAL++ F E + K + I AL E D +L ++
Sbjct: 409 VIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAI-ALLPETDRELPQIKHILPL 467
Query: 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRD--SYVGR 295
+ G+ HH+ L + +IE + G L+++ T T + G+N+PA+ V+ + G+
Sbjct: 468 LRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 527
Query: 296 DF--ISLNMYKQMVGRAGRTGLQESGESIML 324
F +S Y QM GRAGR GL + G IM+
Sbjct: 528 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMM 558
Score = 67 (28.6 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITY 124
E+ ++ DE H + + +RG + E ++ L ++ +SATI N A+ F E I
Sbjct: 255 EVAWVIFDEVHYMRDKERGVVWE---ETIILLPDKVRYVFLSATIPN--AME-FAEWICK 308
Query: 125 VENSRPTKHSEY 136
+ +S+P H Y
Sbjct: 309 I-HSQPC-HIVY 318
>POMBASE|SPAC6F12.16c [details] [associations]
symbol:mtr4 "ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0016078 "tRNA catabolic process" evidence=ISO]
[GO:0031499 "TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA
polyadenylation involved in polyadenylation-dependent ncRNA
catabolic process" evidence=ISO] [GO:0071049 "nuclear retention of
pre-mRNA with aberrant 3'-ends at the site of transcription"
evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC6F12.16c GO:GO:0005524 EMBL:CU329670 GO:GO:0005730
GO:GO:0003676 GO:GO:0031499 GO:GO:0043630 GO:GO:0016078
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696
Pfam:PF13234 EMBL:AB027847 PIR:T11667 RefSeq:NP_593302.1
ProteinModelPortal:O14232 STRING:O14232 EnsemblFungi:SPAC6F12.16c.1
GeneID:2541639 KEGG:spo:SPAC6F12.16c OMA:DDRISAD OrthoDB:EOG4S1XG7
NextBio:20802732 GO:GO:0071049 Uniprot:O14232
Length = 1117
Score = 154 (59.3 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 51/187 (27%), Positives = 92/187 (49%)
Query: 182 VLIFCSSKIACSNLALRL-QFDRFPGT-KEYKKQEKEDLIEALKEENDGKLST--NLEEC 237
V++F SK C LAL++ + D T ++ + + L E+ D +L ++
Sbjct: 457 VIVFSFSKRECEALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEK-DRELPQIEHILPL 515
Query: 238 ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRD--SYVGR 295
+ G+ HH+ L + +IE + G L+++ T T + G+N+PA+ V+ + + G+
Sbjct: 516 LRRGIGIHHSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGK 575
Query: 296 DF--ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISS--HMDP 351
F IS Y QM GRAGR GL + G I++ D SM+ + + S H+
Sbjct: 576 TFRWISGGEYIQMSGRAGRRGLDDRGIVILMIDEKMDPPVAKSMLKGEADRLDSAFHLSY 635
Query: 352 PTLVDLI 358
+++L+
Sbjct: 636 NMILNLL 642
Score = 70 (29.7 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITY 124
E+ ++ DE H + + +RG + E + +L KS +F +SATI N A+ F E IT
Sbjct: 304 EVAWVIFDEIHYMRDKERGVVWEETI--ILLPDKSHFVF-LSATIPN--AMQ-FAEWITK 357
Query: 125 V 125
+
Sbjct: 358 I 358
>ASPGD|ASPL0000004985 [details] [associations]
symbol:AN6007 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:BN001301 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000102 GO:GO:0008026 eggNOG:COG4581
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
RefSeq:XP_663611.1 ProteinModelPortal:Q5B0C3 STRING:Q5B0C3
EnsemblFungi:CADANIAT00007011 GeneID:2871132 KEGG:ani:AN6007.2
Uniprot:Q5B0C3
Length = 1293
Score = 146 (56.5 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 51/162 (31%), Positives = 72/162 (44%)
Query: 172 VLHLVQGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEK--EDLIEALKEENDG 228
V HL + NL+ IF SK C A L F E E + LK+E D
Sbjct: 619 VQHLRKENLLPACIFVFSKKRCEQNADSLSNQDFCNASEKSLIHITIEKSLTRLKQE-DR 677
Query: 229 KLST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRV 286
L L E + G+A HH L + ++E + ++++ T T A G+NLP + V
Sbjct: 678 TLPQILRLRELLSRGIAVHHGGLLPIMKEIVEILFAKTLVKVLFATETFAMGLNLPTRTV 737
Query: 287 IIRD--SYVGRDFISL--NMYKQMVGRAGRTGLQESGESIML 324
+ + G+ F L Y QM GRAGR GL G I++
Sbjct: 738 VFSGFRKHDGKGFRDLLPGEYTQMAGRAGRRGLDNVGYVIVV 779
Score = 79 (32.9 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 24/93 (25%), Positives = 47/93 (50%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI 122
I ++ ++ DE H +N+ +RG + E V+ + L + + + +SAT+ N ++++ G
Sbjct: 426 IRDVEFVIFDEVHYVNDLERGVVWEEVI---IMLPEHVTLILLSATVPNTQEFASWV-GR 481
Query: 123 T-----YVENS--RPTKHSEYVTVDKRVFQSFD 148
T YV ++ RP Y+ K F+ D
Sbjct: 482 TKKKDIYVISTAKRPVPLEHYLWAGKDKFKIVD 514
>UNIPROTKB|F1N993 [details] [associations]
symbol:F1N993 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 GO:GO:0000178 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000460
GO:GO:0008026 GeneTree:ENSGT00690000102230 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 EMBL:AADN02054537 EMBL:AADN02054530
EMBL:AADN02054531 EMBL:AADN02054532 EMBL:AADN02054533
EMBL:AADN02054534 EMBL:AADN02054535 EMBL:AADN02054536
IPI:IPI00599020 Ensembl:ENSGALT00000023719 Uniprot:F1N993
Length = 1031
Score = 174 (66.3 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 60/207 (28%), Positives = 99/207 (47%)
Query: 168 GPDAVLHLV----QGNLM-VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKE---DLI 219
GP V +V + N V+IF SK C AL++ F T E KK +E + I
Sbjct: 359 GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDF-NTDEEKKMVEEVFNNAI 417
Query: 220 EALKEENDGKLST--NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAA 277
+ L +E D KL ++ + G+ HH L + IE + G ++ + T T A
Sbjct: 418 DCLSDE-DKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM 476
Query: 278 GVNLPAQRVIIRDS--YVGRDF--ISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLR 333
G+N+PA+ V+ + + G+DF IS Y QM GRAGR G+ + G I++
Sbjct: 477 GINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI 536
Query: 334 FSSMMNAGPEPISS--HMDPPTLVDLI 358
++ +P++S H+ +++L+
Sbjct: 537 GKQLLKGSADPLNSAFHLTYNMVLNLL 563
Score = 43 (20.2 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 65 EIGLIVIDEFHMLNEPQRG 83
E+ ++ DE H + + ++G
Sbjct: 234 EVAWVIFDEIHYMRDSEKG 252
>UNIPROTKB|F5H6Y7 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00946735
SMR:F5H6Y7 Ensembl:ENST00000547025 Ensembl:ENST00000547224
Ensembl:ENST00000547296 Ensembl:ENST00000548561
Ensembl:ENST00000552010 Uniprot:F5H6Y7
Length = 880
Score = 160 (61.4 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 53/181 (29%), Positives = 88/181 (48%)
Query: 233 NLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDS- 291
++ E + G+ HH+ + + ++E + G ++++ T T A GVN+PA R ++ DS
Sbjct: 257 HMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPA-RTVVFDSM 315
Query: 292 --YVGRDFISL--NMYKQMVGRAGRTGLQESGESIMLCK-TMQDFLRFSSMMNAGPEPIS 346
+ G F L Y QM GRAGR GL +G I+LCK + + MM P +
Sbjct: 316 RKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQ 375
Query: 347 SHMDPP-TLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVAS 405
S T++ +L V A + ED ++K + F + S +D + E L+E+
Sbjct: 376 SQFRLTYTMILNLLRVDALRV----ED---MMKRS-FSEFPSRKDSKAH-EQALAELTKR 426
Query: 406 L 406
L
Sbjct: 427 L 427
>GENEDB_PFALCIPARUM|PFF0100w [details] [associations]
symbol:PFF0100w "putative ATP dependent RNA
helicase" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL844505 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_966011.1
ProteinModelPortal:C6KSM1 EnsemblProtists:PFF0100w:mRNA
GeneID:3885738 KEGG:pfa:PFF0100w EuPathDB:PlasmoDB:PF3D7_0602100
OMA:RGIVIIM ProtClustDB:CLSZ2433467 Uniprot:C6KSM1
Length = 1350
Score = 145 (56.1 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 44/153 (28%), Positives = 72/153 (47%)
Query: 182 VLIFCSSKIACS-NLALRLQFDRFPGT-KEYKKQEKEDLIEALKEENDGKLSTN-LEECI 238
++IF SK C N + D T KE K+ E+ I L +++ + +
Sbjct: 510 LIIFAFSKKECEVNATAMHKIDLTSDTEKEVIKELYENAIRILADDDRSLPQVQFILPLL 569
Query: 239 LYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRD--SYVGRD 296
L G+ HH L + +IE + L+++ T T + G+N+PA+ V+ + G +
Sbjct: 570 LRGIGIHHGGLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLTKFDGLE 629
Query: 297 --FISLNMYKQMVGRAGRTGLQESGESIMLCKT 327
I+ Y QM GRAGR GL + G I++ T
Sbjct: 630 KRLITSGEYIQMAGRAGRRGLDDRGIVIIMLDT 662
Score = 68 (29.0 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGN-------INALST 117
E+ ++ DE H + + RG I E ++ L ++ +SATI N ++++ +
Sbjct: 360 EVKWVIFDEIHYMRDRDRGVIWE---ETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKS 416
Query: 118 FIEGITYVENSRPT--KHSEYVTVDKRVF 144
I Y + RPT +H Y T + VF
Sbjct: 417 QACHIVYTDY-RPTPLQHYIYPTSSESVF 444
Score = 39 (18.8 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 135 EYVTVDKRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHL-VQGN 179
EY+ +K+ ++ + EIY+D ++ T + + L +Q N
Sbjct: 107 EYLIKNKKAEENIKKQIQEEIYSDIQNFDKTNKNVNKIRKLSLQEN 152
>ASPGD|ASPL0000030426 [details] [associations]
symbol:AN5514 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=IEA] [GO:0007129
"synapsis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 EMBL:BN001305 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 eggNOG:COG1204 EMBL:AACD01000094 GO:GO:0008026
KO:K15271 OrthoDB:EOG4WWVSR RefSeq:XP_663118.1
ProteinModelPortal:Q5B1R6 EnsemblFungi:CADANIAT00003572
GeneID:2871792 KEGG:ani:AN5514.2 HOGENOM:HOG000216651
Uniprot:Q5B1R6
Length = 1385
Score = 147 (56.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 57/237 (24%), Positives = 103/237 (43%)
Query: 37 LNKKSIYICTIEKGSKLIGSLIQENRIDE-IGLIVIDEFHMLNEPQRGPILECVVSKVLY 95
+ + I + T EK + R+ + + L +IDE H L E RG LE VVS++
Sbjct: 343 VQNRQIIVTTPEKWDSMTRKWKDHIRLMQPVKLFLIDEVHTLKEA-RGATLEAVVSRMKS 401
Query: 96 LKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVDKRVFQSFDGKSLTEI 155
+ +++ A+SATI N ++T++ G P H E+ + R + K +
Sbjct: 402 IGSNVRFVALSATIPNSEDIATWL-GRNATSQHVPA-HREHFGEEFRPVKL--QKFVYGY 457
Query: 156 YADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEK 215
+ +++ ++ ++IFCS++ + + A L + + +
Sbjct: 458 HFSGNNFAFDKLLNSNIIGTHSAKKPIMIFCSTRNSTVSTAKEL-------ARLWSMSSR 510
Query: 216 EDLIEALKEENDGK--LSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIIC 270
L+ K N +L+ GVA+HHA L +R L+E YL G + +IC
Sbjct: 511 --LVRMWKGPNKPLPVKHADLKVTTAAGVAFHHAGLETEDRHLVENGYLQGKISVIC 565
Score = 65 (27.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 294 GRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPT 353
G+++ L + QM+GRAGR +S +++L T ++ + + +G E + S +
Sbjct: 569 GQEYSDLEVM-QMLGRAGRPQFDDSATAVIL--TRKERVSHYERLVSGSESVESSLHLNL 625
Query: 354 LVDLILEVVAANLCSS 369
+ L E+ N+ S+
Sbjct: 626 IEHLNAEIGLGNIKST 641
>RGD|1560014 [details] [associations]
symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 60"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003725
"double-stranded RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1560014 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00690000102154 IPI:IPI00358301
Ensembl:ENSRNOT00000019667 Uniprot:F1M4N8
Length = 1304
Score = 162 (62.1 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 49/185 (26%), Positives = 88/185 (47%)
Query: 209 EYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQI 268
+ K ++E L K + L++ G+ YHH+ +T E++L+E + G +++
Sbjct: 820 DQKAIDEEALQMVFKRVKYERKGDTLKKLARRGIGYHHSSMTNKEKQLVEILFRKGFIRV 879
Query: 269 ICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTM 328
+ T TL+ G+N+P + V+ + V D +LN Y+QM GRAGR G G+ +
Sbjct: 880 VTATRTLSLGINMPCKSVVFAQNSVYLD--ALN-YRQMSGRAGRRGQDLLGDVYFFDIPL 936
Query: 329 QDFLRFSSMMNAGPEPISSHMDPPTLVDLILEVVA-ANLCSSLEDVK----TLIKHTLFY 383
+ ++ + + P + LIL ++ A LED K +++KH+L
Sbjct: 937 P---KIGKLIKSKVPDLRGQF--PLSITLILRLMLLATKADDLEDGKAKALSVLKHSLL- 990
Query: 384 QLKSP 388
K P
Sbjct: 991 SFKQP 995
Score = 54 (24.1 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 59 QENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTF 118
++N + I ++ DE H + R I E ++ + A+SATI N L+ +
Sbjct: 468 RQNWVKRIRYVIFDEVHCIGGEIRAEIWEHLLVMI-----RCPFLALSATISNPQHLTEW 522
Query: 119 IEGI 122
++ +
Sbjct: 523 LQSV 526
Score = 39 (18.8 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 575 RFCEELPELWCYKQLLTDLPQ 595
+F E P+ + K L DLPQ
Sbjct: 1091 KFHEAHPKFYQSKVFLDDLPQ 1111
>WB|WBGene00016194 [details] [associations]
symbol:C28H8.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0004427 "inorganic diphosphatase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 EMBL:FO080703
eggNOG:COG4581 GeneTree:ENSGT00690000102154 PIR:A88470
RefSeq:NP_498283.1 ProteinModelPortal:Q09475 SMR:Q09475
STRING:Q09475 PaxDb:Q09475 EnsemblMetazoa:C28H8.3.1
EnsemblMetazoa:C28H8.3.2 GeneID:175834 KEGG:cel:CELE_C28H8.3
UCSC:C28H8.3.1 CTD:175834 WormBase:C28H8.3 HOGENOM:HOG000018763
InParanoid:Q09475 OMA:YARFRNK NextBio:889866 Uniprot:Q09475
Length = 1714
Score = 159 (61.0 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 39/110 (35%), Positives = 60/110 (54%)
Query: 218 LIEALKEENDGKLSTN-LEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLA 276
++E +++ + ST L + G+ YHHA L ER +E + +G L ++ TSTL+
Sbjct: 1257 MVERMQKGAKTRESTQVLLKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLS 1316
Query: 277 AGVNLPAQRVIIRDSYVGRDFISLN--MYKQMVGRAGRTGLQESGESIML 324
GVN+P + V+ G D + L +Y+QM GRAGR G SG I +
Sbjct: 1317 LGVNMPCKTVMF-----GVDTLQLTPLLYRQMSGRAGRRGFDHSGNVIFM 1361
Score = 60 (26.2 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFI 119
+ I +V DE H + + I E L L A+SATIGN N L ++
Sbjct: 904 VSHIKYVVFDEVHSIGASEESHIWE-----QLLLLIQCPFLALSATIGNANKLHEWL 955
Score = 38 (18.4 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 177 QGNLMVLIFCSSKIACSNLALRL--QFDR----FPGTKEYKKQ----EKEDLIEALKEEN 226
+G L + F + C LA+ L + +R + T E+K + ++ L++ K +
Sbjct: 1141 KGELPAICFNDDRHVCEKLAVTLANELERRELEYMETDEFKNKYMIKDESKLVKLAKRKR 1200
Query: 227 D 227
D
Sbjct: 1201 D 1201
>DICTYBASE|DDB_G0277211 [details] [associations]
symbol:DDB_G0277211 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0277211 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000019 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC RefSeq:XP_642686.1
ProteinModelPortal:Q86K90 EnsemblProtists:DDB0233454 GeneID:8620875
KEGG:ddi:DDB_G0277211 InParanoid:Q86K90 Uniprot:Q86K90
Length = 1378
Score = 146 (56.5 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 55/179 (30%), Positives = 81/179 (45%)
Query: 180 LMVLIFCSSKIACSNLALRL-QFDRFPGTKEYKKQEKEDLIEALKE--ENDGKLSTNLE- 235
L V+IF SK C A L Q E K Q + + ++L E+D L L+
Sbjct: 690 LPVIIFSFSKNKCQEYAGSLGQSVNLTQGNE-KSQIRVFIEQSLGRLCEDDKSLPQILQM 748
Query: 236 -ECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVII-----R 289
E + G+ HH L + L+E + ++++ T T A GVN+PA+ V+
Sbjct: 749 KELLERGIGVHHGGLLPIVKELVEILFSKSLVKVLFATETFAMGVNMPAKTVVYSSTRKH 808
Query: 290 DSYVGRDFISLNMYKQMVGRAGRTGLQESGESIMLC-KTMQDFLRFSSMMNAGPEPISS 347
D RD I Y QM GRAGR GL + G I+ K + + SM+ P ++S
Sbjct: 809 DGITFRDLIP-GEYTQMSGRAGRRGLDKVGTVIITYWKDIPEQATIESMILGTPSRLNS 866
Score = 71 (30.1 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 27/94 (28%), Positives = 45/94 (47%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI 122
I +I ++ DE H LN+ +RG + E V+ + L +++ +SAT+ N + +I G
Sbjct: 537 IRDIEWVIFDEVHYLNDLERGVVWEEVI---IMLPPYVKMVFLSATVSNPLEFAQWI-GR 592
Query: 123 T-----YV--ENSRPTKHSEYV-TVDKRVFQSFD 148
T YV RP Y+ T +F+ D
Sbjct: 593 TKQLPIYVIGTTKRPIPLEHYIHTPSNELFKIVD 626
Score = 37 (18.1 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 672 EAMKNLIQNLQKNY 685
EA +NLI+ +K Y
Sbjct: 1264 EAKQNLIKTAEKTY 1277
>UNIPROTKB|I3LAH4 [details] [associations]
symbol:I3LAH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00640000091272 EMBL:CU104757
Ensembl:ENSSSCT00000025204 OMA:FMKEGSA Uniprot:I3LAH4
Length = 197
Score = 133 (51.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 54/210 (25%), Positives = 97/210 (46%)
Query: 100 IQIFAMSATIGNINALSTFIE-----GITYVENS-RPTKHSEYVTVDKRVFQSFDG-KSL 152
I+I +SAT+ N ++TF+ G+ Y + RP + Q+F G KS
Sbjct: 2 IRILGLSATLPNYLDVATFLHVNPCIGLFYFDGRFRPVP----------LGQTFLGVKSA 51
Query: 153 TEIYA-DNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKE-- 209
++ +N+D ++VL V+ V++F ++ A A+ L +R +
Sbjct: 52 NKVQQLNNMDEVCY----ESVLKQVKAGHQVMVFVHARNATVRTAMSL-IERAKNNGQIS 106
Query: 210 -YKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQI 268
+ + + A K+ + + + E G + HHA + +R L+E + G +++
Sbjct: 107 YFLPTQGPEYGHAEKQVQKSR-NKQVRELFPDGFSIHHAGMLRQDRNLVESLFSNGHIKV 165
Query: 269 ICCTSTLAAGVNLPAQRVIIRDSYVGRDFI 298
+ CT+TLA GVNLPA VII+ F+
Sbjct: 166 LVCTATLAWGVNLPAHAVIIKVRSFAHGFV 195
>UNIPROTKB|J9P0M0 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102154 EMBL:AAEX03010133 EMBL:AAEX03010134
EMBL:AAEX03010135 Ensembl:ENSCAFT00000044956 Uniprot:J9P0M0
Length = 1708
Score = 154 (59.3 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 41/153 (26%), Positives = 77/153 (50%)
Query: 241 GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISL 300
G+ YHH+ L+ +++L+E + G ++++ T TLA G+N+P + V+ + + D +L
Sbjct: 1256 GIGYHHSSLSFKDKQLVEVLFRKGFIRVVTATGTLALGINMPCKSVVFAQNSIYLD--AL 1313
Query: 301 NMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILE 360
N Y+QM GRAGR G G+ + + ++ + + P + L+L
Sbjct: 1314 N-YRQMSGRAGRRGQDLMGDVYFFGIPLP---KIEKLIKSNVPELRGQF--PLGITLVLR 1367
Query: 361 VVA-ANLCSSLEDVK----TLIKHTLFYQLKSP 388
++ A+ ED K +++KH+L K P
Sbjct: 1368 LMLLASKADDPEDAKAKVLSVLKHSLL-SFKQP 1399
Score = 45 (20.9 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI 122
+ I ++ DE H L G I V +L + + A+SATI N L+ +++ +
Sbjct: 876 VKRIRYVIFDEVHCLG----GEIGAEVWEHLLVMIRC-PFLALSATISNPEHLTEWLQSV 930
>UNIPROTKB|E2QSY2 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003727
GO:GO:0051607 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 OMA:QDCTYAD
GO:GO:1900245 GO:GO:1900246 GeneTree:ENSGT00690000102154
EMBL:AAEX03010133 EMBL:AAEX03010134 EMBL:AAEX03010135
Ensembl:ENSCAFT00000014321 Uniprot:E2QSY2
Length = 1711
Score = 154 (59.3 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 41/153 (26%), Positives = 77/153 (50%)
Query: 241 GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISL 300
G+ YHH+ L+ +++L+E + G ++++ T TLA G+N+P + V+ + + D +L
Sbjct: 1259 GIGYHHSSLSFKDKQLVEVLFRKGFIRVVTATGTLALGINMPCKSVVFAQNSIYLD--AL 1316
Query: 301 NMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILE 360
N Y+QM GRAGR G G+ + + ++ + + P + L+L
Sbjct: 1317 N-YRQMSGRAGRRGQDLMGDVYFFGIPLP---KIEKLIKSNVPELRGQF--PLGITLVLR 1370
Query: 361 VVA-ANLCSSLEDVK----TLIKHTLFYQLKSP 388
++ A+ ED K +++KH+L K P
Sbjct: 1371 LMLLASKADDPEDAKAKVLSVLKHSLL-SFKQP 1402
Score = 45 (20.9 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI 122
+ I ++ DE H L G I V +L + + A+SATI N L+ +++ +
Sbjct: 879 VKRIRYVIFDEVHCLG----GEIGAEVWEHLLVMIRC-PFLALSATISNPEHLTEWLQSV 933
>POMBASE|SPAC694.02 [details] [associations]
symbol:SPAC694.02 "DEAD/DEAH box helicase" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC694.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:T50247 RefSeq:NP_594482.1
ProteinModelPortal:Q9P7T8 PRIDE:Q9P7T8 EnsemblFungi:SPAC694.02.1
GeneID:2543333 KEGG:spo:SPAC694.02 HOGENOM:HOG000194492 OMA:HTRDYRI
OrthoDB:EOG4S4SQ7 NextBio:20804349 Uniprot:Q9P7T8
Length = 1717
Score = 134 (52.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 36/119 (30%), Positives = 59/119 (49%)
Query: 204 FPGTKE-YKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYL 262
F G K Y K+E +EAL+ + + + G+ HH+ L R+++E +
Sbjct: 1188 FAGAKSTYGKEELYRDLEALRRRQ--AVPEWYVDALYRGIGIHHSGLNRRYRQIVEVLFR 1245
Query: 263 AGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNM--YKQMVGRAGRTGLQESG 319
G L ++ T TL+ G+N+P + V+ ++G D + LN + Q GRAGR G G
Sbjct: 1246 CGQLTVVIATRTLSLGINMPCRTVV----FLG-DSLQLNALNFHQAAGRAGRRGFDLLG 1299
Score = 60 (26.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 65 EIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI 122
+I I+ DE H + + + G +V + L L I A+SAT+GN ++ +
Sbjct: 857 KIRRIIFDEIHCIGQMEDG-----LVEEQLLLLAPCPIVALSATVGNPQEFQVWLSAL 909
>TIGR_CMR|BA_1505 [details] [associations]
symbol:BA_1505 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:DALIIMP RefSeq:NP_843957.1 RefSeq:YP_018128.2
RefSeq:YP_027663.1 ProteinModelPortal:Q81SY8 DNASU:1087356
EnsemblBacteria:EBBACT00000009666 EnsemblBacteria:EBBACT00000015103
EnsemblBacteria:EBBACT00000023330 GeneID:1087356 GeneID:2817068
GeneID:2848363 KEGG:ban:BA_1505 KEGG:bar:GBAA_1505 KEGG:bat:BAS1394
ProtClustDB:CLSK916267 BioCyc:BANT260799:GJAJ-1468-MONOMER
BioCyc:BANT261594:GJ7F-1530-MONOMER Uniprot:Q81SY8
Length = 509
Score = 137 (53.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 34/95 (35%), Positives = 49/95 (51%)
Query: 241 GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISL 300
GVA++H + ER LI++ ++ LQ++ CTS GVN R II Y ++
Sbjct: 254 GVAFYHGGMEHEERMLIQQQFMNNQLQLVICTSAFGMGVNKANTRYIIHFHYP----TNI 309
Query: 301 NMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFS 335
Y Q +GRAGR G E +I+LC + L S
Sbjct: 310 ASYLQEIGRAGRDG--EPSIAILLCSPLDHDLPIS 342
Score = 44 (20.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 34 KRQLNKKSIYICTIEKGSKLIGS--LIQENRIDEIGLIVIDEFHMLNE 79
KR+ KK I +++ S LI+E + I L V+DE H +++
Sbjct: 95 KREAMKKLSSYKFIFVSPEMLQSELLIRELKKIHISLFVVDEAHCISQ 142
>UNIPROTKB|Q5H9U9 [details] [associations]
symbol:DDX60L "Probable ATP-dependent RNA helicase
DDX60-like" species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 HOGENOM:HOG000169263 HOVERGEN:HBG107797
EMBL:AL832950 EMBL:CR933601 EMBL:AC079926 EMBL:AC093888
EMBL:AK055595 IPI:IPI00853133 IPI:IPI00935252 RefSeq:NP_001012985.1
UniGene:Hs.535011 ProteinModelPortal:Q5H9U9 STRING:Q5H9U9
PhosphoSite:Q5H9U9 DMDM:74755482 PaxDb:Q5H9U9 PRIDE:Q5H9U9
Ensembl:ENST00000260184 Ensembl:ENST00000505890
Ensembl:ENST00000511577 GeneID:91351 KEGG:hsa:91351 UCSC:uc003irq.4
CTD:91351 GeneCards:GC04M169277 HGNC:HGNC:26429 HPA:HPA043211
neXtProt:NX_Q5H9U9 PharmGKB:PA162383445 InParanoid:Q5H9U9
OMA:AQDSVYL GenomeRNAi:91351 NextBio:77184 ArrayExpress:Q5H9U9
Bgee:Q5H9U9 CleanEx:HS_DDX60L Genevestigator:Q5H9U9 Uniprot:Q5H9U9
Length = 1706
Score = 151 (58.2 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 54/214 (25%), Positives = 99/214 (46%)
Query: 241 GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISL 300
G+ YHH+ + E+ +E ++ G ++++ T TLA G+++P + V+ V D +L
Sbjct: 1244 GIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVFAQDSVYLD--AL 1301
Query: 301 NMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPISSHMDPPTLVDLILE 360
N Y+QM GRAGR G G + R + ++ PE + P + L+L
Sbjct: 1302 N-YRQMSGRAGRRGQDLLGNVYFFDIPLPKIKRL--LASSVPE-LRGQF--PLSITLVLR 1355
Query: 361 VVA-ANLCSSLEDVK----TLIKHTL--FYQLKSPEDQQTFLETTLSEIVAS-LLASKGT 412
++ A+ ED K +++KH+L F + ++ E + + +L ++ L KG
Sbjct: 1356 LMLLASKGDDPEDAKAKVLSVLKHSLLSFKRRRAMETLKLYFLFSLQLLIKEDYLNKKGN 1415
Query: 413 M-----LTMNEAGHLSLTSIAKAAVQAGLSHDVC 441
L GH + ++ GL H++C
Sbjct: 1416 PKKFAGLASYLHGHEPSNLVFVNFLKRGLFHNLC 1449
Score = 48 (22.0 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI 122
++ I ++ DE H L E ++ + +SATI N N L+ +++ +
Sbjct: 860 VERIRYVIFDEVHYLGREVGAKFWELLLVII-----RCPFLVLSATINNPNLLTKWLQSV 914
Score = 40 (19.1 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 211 KKQEKEDLIEALKEENDGKLSTNLEE 236
K Q+ +DL+ +++EE L + + +
Sbjct: 582 KAQQNDDLLFSIEEEMKNNLHSGIRK 607
Score = 39 (18.8 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 539 VLNFDNHQKVAKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPEL 583
VLNF H + ++ + L FA + + L EL
Sbjct: 1626 VLNFYKHNCLTRLDQKNGMRMGQLLKCLKDFAFNIQAISDSLSEL 1670
>UNIPROTKB|H9L1I7 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AADN02044729 EMBL:AADN02044730
Ensembl:ENSGALT00000035545 OMA:PRKERIM Uniprot:H9L1I7
Length = 771
Score = 136 (52.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 45/188 (23%), Positives = 93/188 (49%)
Query: 1 MVHEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQE 60
+V E S K + + E + G + K +++ I +CT EK + +
Sbjct: 547 LVQEMVGSFGKRLATYGINVAE---LTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 61 NRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVL----YLKKSIQIFAMSATIGNINALS 116
+ L+++DE H+L++ RGP+LE +V++ + ++ +++ +SAT+ N ++
Sbjct: 604 TYTQLVRLVILDEIHLLHD-DRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYEDVA 662
Query: 117 TFI-----EGITYVENS-RPTKHSE-YVTV-DKRVFQSFDGKSLTEIYADNLDYSLTGSG 168
TF+ +G+ Y +NS RP + YV + +K+ + F + + EI + + + +G
Sbjct: 663 TFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRF--QIMNEIVYEKI---MEHAG 717
Query: 169 PDAVLHLV 176
+ VL V
Sbjct: 718 KNQVLVFV 725
>UNIPROTKB|F1RIW4 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:1900245 "positive regulation of MDA-5
signaling pathway" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0003727 GO:GO:0051607
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 OMA:QDCTYAD GO:GO:1900245 GO:GO:1900246
GeneTree:ENSGT00690000102154 EMBL:AEMK01191618 EMBL:CU469408
Ensembl:ENSSSCT00000010657 Uniprot:F1RIW4
Length = 1705
Score = 152 (58.6 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 241 GVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISL 300
GV YHH+ L E++L+E + G ++++ T TLA G+N+P + V+ + + D +L
Sbjct: 1253 GVGYHHSSLNFKEKQLVEILFRKGFIRVVTATGTLALGINMPCKSVVFAQNSIYLD--AL 1310
Query: 301 NMYKQMVGRAGRTGLQESGE 320
N Y+QM GRAGR G G+
Sbjct: 1311 N-YRQMSGRAGRRGQDLLGD 1329
Score = 44 (20.5 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 63 IDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGI 122
+ I ++ DE H L G I + +L + + A+SATI N L+ +++ +
Sbjct: 874 VKRIRYVIFDEVHCLG----GEIGAEIWEHLLVMIRC-PFLALSATISNPEHLTEWLQSV 928
Score = 41 (19.5 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 559 LQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQ 595
L N T YF +K F E P+ + K L DLP+
Sbjct: 1480 LANLFGRT-YFPAK---FHESPPKFYQSKVFLEDLPK 1512
Score = 41 (19.5 bits), Expect = 5.7e-05, Sum P(3) = 5.7e-05
Identities = 16/77 (20%), Positives = 33/77 (42%)
Query: 179 NLMVLIFCSSKIACSNLALRLQFDRF-PGTKEYKKQEKEDLIEALKEENDGKLSTNLEEC 237
+L+V+I C + ++ + K Y KQ E + + + + G + ++C
Sbjct: 899 HLLVMIRCPFLALSATISNPEHLTEWLQSVKRYWKQADERMGQNIASRSVGCRPGSRKDC 958
Query: 238 ILYGVAYHHADLTAGER 254
+L +Y + GER
Sbjct: 959 LLAKQSYRVRLVLYGER 975
>UNIPROTKB|P30015 [details] [associations]
symbol:lhr "member of ATP-dependent helicase superfamily
II" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 InterPro:IPR013701
Pfam:PF00270 Pfam:PF00271 Pfam:PF08494 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:L01622 PIR:G64922 RefSeq:NP_416170.1 RefSeq:YP_489917.1
ProteinModelPortal:P30015 SMR:P30015 DIP:DIP-10097N IntAct:P30015
MINT:MINT-1293547 PaxDb:P30015 PRIDE:P30015
EnsemblBacteria:EBESCT00000003531 EnsemblBacteria:EBESCT00000018334
GeneID:12931274 GeneID:946156 KEGG:ecj:Y75_p1630 KEGG:eco:b1653
PATRIC:32118608 EchoBASE:EB1510 EcoGene:EG11548 eggNOG:COG1201
HOGENOM:HOG000238716 KO:K03724 OMA:PRLVWDR ProtClustDB:PRK09751
BioCyc:EcoCyc:EG11548-MONOMER BioCyc:ECOL316407:JW1645-MONOMER
Genevestigator:P30015 Uniprot:P30015
Length = 1538
Score = 138 (53.6 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 80/363 (22%), Positives = 156/363 (42%)
Query: 25 GVK-GQYPPTKRQL---NKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80
G++ G P +R N I I T E ++ S +E + + ++IDE H +
Sbjct: 129 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARET-LRGVETVIIDEVHAVAGS 187
Query: 81 QRGPILECVVSKV-LYLKKSIQIFAMSATIGNINALSTFIEG---ITYVENSRPTKHSEY 136
+RG L + ++ L S Q +SAT+ + + ++ F+ G +T V N +H +
Sbjct: 188 KRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVV-NPPAMRHPQ- 245
Query: 137 VTVDKRVFQSFDGKSLTEIYADNLDYSLTGS-GP---DAVLHLVQGNLMVLIFCSSKIAC 192
+ + V D S+ ++ GS P +L V + ++F +S+
Sbjct: 246 IRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLA 305
Query: 193 SNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAG 252
L RL + + + D A E G S ++ ++ HH ++
Sbjct: 306 EKLTARLN-ELYAARLQRSPSIAVDA--AHFESTSGATSNRVQSSDVFIARSHHGSVSKE 362
Query: 253 ERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGR 312
+R + E+A +G L+ + TS+L G+++ A ++I+ V +S+ Q +GRAG
Sbjct: 363 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ---VATP-LSVASGLQRIGRAGH 418
Query: 313 TGLQESGES--IMLCKTMQDFLRFSSMMNAGPEPISSHMDPP-TLVDLILE-VVAANLCS 368
Q G S + +T +D + + ++ ++ PP +D++ + VAA
Sbjct: 419 ---QVGGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMD 475
Query: 369 SLE 371
+L+
Sbjct: 476 ALQ 478
>DICTYBASE|DDB_G0278827 [details] [associations]
symbol:DDB_G0278827 "Probable ATP-dependent RNA
helicase DDX60" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0278827 GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AAFI02000024 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 RefSeq:XP_641993.1
ProteinModelPortal:Q54XN7 EnsemblProtists:DDB0206223 GeneID:8621725
KEGG:ddi:DDB_G0278827 InParanoid:Q54XN7 OMA:RESALIC Uniprot:Q54XN7
Length = 1816
Score = 129 (50.5 bits), Expect = 5.7e-05, Sum P(4) = 5.7e-05
Identities = 36/129 (27%), Positives = 59/129 (45%)
Query: 198 RLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTN-LEECILYGVAYHHADLTAGERRL 256
+++ +R + K L + D K+ + L + G+A HH R
Sbjct: 1224 KMELERLKAKRASLDYLKPQFGNLLSSDIDEKVKKDPLAPALTQGIAAHHGGCDKNYLRN 1283
Query: 257 IEEAYLAGTLQIICCTSTLAAGVNLPAQR-VIIRDSYVGRDFISLNMYKQMVGRAGRTGL 315
+E + + +Q++ TSTLA GVN PA+ V + DS ++++ KQ GRAGR G
Sbjct: 1284 VEYLFRSKKIQVVFATSTLAVGVNAPAKSSVFLGDS----PYLNVLTSKQCAGRAGRRGF 1339
Query: 316 QESGESIML 324
G I +
Sbjct: 1340 DNYGNVIFV 1348
Score = 60 (26.2 bits), Expect = 5.7e-05, Sum P(4) = 5.7e-05
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 56 SLIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINAL 115
S++ + I I+ DE H + G I E ++L + A+SAT+GN+
Sbjct: 933 SIMNTHFIQRCRYIIFDEVHQIASSVDGAIWE----RLLVFNPA-PFLALSATLGNLTDF 987
Query: 116 STFIEGI 122
F++ I
Sbjct: 988 HNFLKKI 994
Score = 53 (23.7 bits), Expect = 5.7e-05, Sum P(4) = 5.7e-05
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 541 NFDNHQKVAKMYGIQN-SHLQNFLNVTSYFASKVYRFC 577
NF+ ++ ++ + N L+N L +YF++++ +C
Sbjct: 1697 NFNTGDLLSGIFKVSNLKKLKNILGSNTYFSTRILPYC 1734
Score = 37 (18.1 bits), Expect = 5.7e-05, Sum P(4) = 5.7e-05
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 347 SHMDPP--TLVDLILEVVAANLCSSLEDVKTLIKHTLFY 383
S+++P T V L+ V NL ++ +D I H L Y
Sbjct: 1557 SYLEPFNFTFVSLLKGGVFDNLPTNQKDCDYFIIHILSY 1595
>UNIPROTKB|I3LVA7 [details] [associations]
symbol:I3LVA7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GeneTree:ENSGT00700000104562 GO:GO:0008026 EMBL:CU468078
Ensembl:ENSSSCT00000024341 Uniprot:I3LVA7
Length = 119
Score = 100 (40.3 bits), Expect = 0.00031, P = 0.00031
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 44 ICTIEKGSKLIGSLIQENRIDEI-GLIVIDEFHMLNEPQRGPILECVVSKVLYLKKS--- 99
+ T EK + + + + +I L+++DE H+L+E RGP+LE +V++ L +S
Sbjct: 3 VTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHE-DRGPVLESIVARTLRQVESTQS 61
Query: 100 -IQIFAMSATIGNINALSTFI 119
I+I +SAT+ N ++TF+
Sbjct: 62 MIRILGLSATLPNYLDVATFL 82
>FB|FBgn0027375 [details] [associations]
symbol:RecQ5 "homolog of RecQ" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA;IMP] [GO:0045930 "negative regulation of
mitotic cell cycle" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IDA] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0090007 "regulation of
mitotic anaphase" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
GO:GO:0005634 GO:GO:0003924 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045002 GO:GO:0045930
TIGRFAMs:TIGR00614 GO:GO:0090007 GO:GO:0017116 HSSP:P15043
FlyBase:FBgn0027375 EMBL:AB031086 ProteinModelPortal:Q9U5E0
PRIDE:Q9U5E0 InParanoid:Q9U5E0 ArrayExpress:Q9U5E0 Bgee:Q9U5E0
Uniprot:Q9U5E0
Length = 1058
Score = 123 (48.4 bits), Expect = 0.00096, P = 0.00096
Identities = 32/75 (42%), Positives = 44/75 (58%)
Query: 242 VAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLN 301
VAYH A L GER ++EA++ G IIC T++ GV+ P+ R +I V ++ +
Sbjct: 284 VAYH-AGLKTGERTEVQEAWMRGDQPIICATNSFGMGVDKPSVRFVIHWD-VPQNVAA-- 339
Query: 302 MYKQMVGRAGRTGLQ 316
Y Q GRAGR GLQ
Sbjct: 340 -YYQESGRAGRDGLQ 353
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 693 693 0.00081 121 3 11 22 0.37 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 138
No. of states in DFA: 610 (65 KB)
Total size of DFA: 327 KB (2166 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 59.87u 0.12s 59.99t Elapsed: 00:00:04
Total cpu time: 59.94u 0.12s 60.06t Elapsed: 00:00:04
Start: Thu Aug 15 16:10:18 2013 End: Thu Aug 15 16:10:22 2013
WARNINGS ISSUED: 1