RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15878
(693 letters)
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 103 bits (257), Expect = 7e-26
Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 9/177 (5%)
Query: 170 DAVLHLVQGNLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGK 229
+ V V N VL+F S++ A++L K E E L +A+ EEN+G+
Sbjct: 31 ELVEECVAENGGVLVFESTRRGAEKTAVKLS------AITAKYVENEGLEKAILEENEGE 84
Query: 230 LSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIR 289
+S L EC+ G A+HHA L G+RR++E+A+ G ++++ T TLAAGVNLPA+RVI+R
Sbjct: 85 MSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVR 144
Query: 290 DSYV---GRDFISLNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAGPE 343
Y I ++ YKQM GRAGR G+ E GE+I++ + + PE
Sbjct: 145 SLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPE 201
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 198
Score = 77.6 bits (191), Expect = 6e-17
Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 9/168 (5%)
Query: 493 FHPQTLRVAEALGVTENLVALNVTGKLK----DEKKALLCRFFHACILYDVLNFDNHQKV 548
T+R ++ E E L A L D + + ++
Sbjct: 32 MERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEI 91
Query: 549 AKMYGIQNSHLQNFLNVTSYFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRAL 608
YGI L+ + + ++ + R EE+ ++ L + + + L L
Sbjct: 92 CAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTS-----VSGLTERIKHGVKEELLEL 146
Query: 609 MDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNL 656
+ + + RAR+L NAG + E I R K R + R +
Sbjct: 147 VRIRHIGRVRARKLYNAGIRNAEDIVRHREKVASLIGRGIAERVVEGI 194
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 61
Score = 47.3 bits (113), Expect = 8e-08
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 606 RALMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661
R++ DLPGV A +L AGY +LE IA A E+ ++ + +A +I AA+
Sbjct: 1 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIEL-KEVAGISEGTALKIIQAAR 55
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 50.4 bits (119), Expect = 1e-07
Identities = 20/68 (29%), Positives = 42/68 (61%)
Query: 62 RIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEG 121
I + +V+DE H+L+ +RG LE +V+K+ + K++++ +SAT N+ ++ +++
Sbjct: 135 WIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDA 194
Query: 122 ITYVENSR 129
YV + R
Sbjct: 195 DYYVSDWR 202
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 60
Score = 45.9 bits (109), Expect = 2e-07
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 608 LMDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661
L DLPGV A +L+ AGY IA A E+ I + ++A +I A+
Sbjct: 1 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGEL-TDIEGISEKAAAKMIMGAR 53
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 41.4 bits (96), Expect = 2e-04
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 242 VAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLP-AQRVIIRDSYVGRDFISL 300
+ L+ E++LI + + G ++ TS G+++P V+ + S
Sbjct: 196 SKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP-----VPSA 250
Query: 301 NMYKQMVGRAGRTGLQESGESIMLC--KTMQDFLRFSS 336
Q GR GR G I+L T + +SS
Sbjct: 251 IRSIQRRGRTGRHM---PGRVIILMAKGTRDEAYYWSS 285
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 39.9 bits (92), Expect = 4e-04
Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 8/140 (5%)
Query: 179 NLMVLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEEC- 237
N +V+ + A L + R + K ++ +++E +++ + + E
Sbjct: 48 NKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVY 107
Query: 238 ---ILYGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVG 294
++ + + ER I E + G + I + L G+++P V + S G
Sbjct: 108 RISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSG 167
Query: 295 RDFISLNMYKQMVGRAGRTG 314
S Y Q +GR R
Sbjct: 168 ----SAREYIQRLGRILRPS 183
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 38.9 bits (90), Expect = 0.001
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 30 YPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRID--EIGLIVIDEFHMLNEPQRGPILE 87
P + L +I + T + I I ++ + ++DE + +E
Sbjct: 112 IYPQIKALKNANIVVGTPGR----ILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVE 167
Query: 88 CVVSKVLYLKKSIQIFAMSATI 109
+++ K +I SAT+
Sbjct: 168 KILN---ACNKDKRILLFSATM 186
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 38.7 bits (89), Expect = 0.002
Identities = 38/325 (11%), Positives = 72/325 (22%), Gaps = 91/325 (28%)
Query: 21 EEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFHMLNEP 80
E G+ +Y + I + + L+ R+ LI++DE H +
Sbjct: 56 EALRGLPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPA 115
Query: 81 QRGPILECVVSKVLYLKKSIQIFAMSATIGNINALSTFIEGITYVENSRPTKHSEYVTVD 140
M+AT S E +
Sbjct: 116 SIAARGYI---STRVEMGEAAGIFMTATP---------PGSRDPFPQSNAPIMDEEREIP 163
Query: 141 KRVFQSFDGKSLTEIYADNLDYSLTGSGPDAVLHLVQGNLMVLIFCSSKIACSNLALRLQ 200
+R + + + F S A +++A L+
Sbjct: 164 ERSWN------------------------SGHEWVTDFKGKTVWFVPSIKAGNDIAACLR 199
Query: 201 FDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEA 260
+ V E
Sbjct: 200 KNGKK------------------------------------VIQLSRKTFDSEY----IK 219
Query: 261 YLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGR---------------DFISLNMYKQ 305
+ T G N A+RVI + ++ + Q
Sbjct: 220 TRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQ 279
Query: 306 MVGRAGRTGLQESGESIMLCKTMQD 330
GR GR E+ + I + + +++
Sbjct: 280 RRGRVGRNPKNENDQYIYMGEPLEN 304
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 38.3 bits (88), Expect = 0.002
Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 15/125 (12%)
Query: 1 MVHEKYQSLAKAAEEFKFYL---EEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSL 57
+V + A + + L + G + N + + T + K
Sbjct: 163 IVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVK----- 217
Query: 58 IQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATIGNINALST 117
+ + G+++ DE H+ I+ L + F +S ++ + A
Sbjct: 218 QPKEWFSQFGMMMNDECHLATGKSISSIIS-------GLNNCMFKFGLSGSLRDGKANIM 270
Query: 118 FIEGI 122
G+
Sbjct: 271 QYVGM 275
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 33.5 bits (77), Expect = 0.007
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 609 MDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661
++ G+ ++L AG+ ++E +A A KE+ I+ + A +++ A
Sbjct: 13 LEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL-INIKGISEAKADKILAEAA 64
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 35.2 bits (80), Expect = 0.016
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
Query: 240 YGVAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFIS 299
+ + H L+ E+ + + G I+ T+ + G+++P V++ +
Sbjct: 65 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV---IENPERFG 121
Query: 300 LNMYKQMVGRAGRTGLQESGESIMLCKTMQDFLRFSSMMNAG 341
L Q+ GR GR G + ++ + R
Sbjct: 122 LAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRFFTLNT 163
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 85
Score = 32.1 bits (73), Expect = 0.036
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 346 SSHMDPPTLVDLILEVVAANLCSSLEDVKTLIKHTLFYQLKSPEDQQTFLETTLSEIVAS 405
S L L ++ +LE+++ T F++ ++ LE + ++
Sbjct: 4 SKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFK-QNEISLSYELERVVRQLENW 62
Query: 406 LLASKGTMLTMNEAGHLS 423
+ + L + G L
Sbjct: 63 GMVVEAAHLAPTKLGSLV 80
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 34.1 bits (78), Expect = 0.040
Identities = 18/132 (13%), Positives = 26/132 (19%), Gaps = 29/132 (21%)
Query: 182 VLIFCSSKIACSNLALRLQFDRFPGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYG 241
LIFC SK C LA +L Y+ +
Sbjct: 39 HLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS------------------------- 73
Query: 242 VAYHHADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDF-ISL 300
+ G + +T + +
Sbjct: 74 -VIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTF--TIETTTLPQDA 130
Query: 301 NMYKQMVGRAGR 312
Q GR GR
Sbjct: 131 VSRTQRRGRTGR 142
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 33.3 bits (75), Expect = 0.062
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 60 ENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSATI 109
E + L++ DE H L I + ++ ++AT
Sbjct: 164 EKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAP--------FRLGLTATF 205
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 64
Score = 30.4 bits (69), Expect = 0.072
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 609 MDLPGVKIGRARQLLNAGYSSLELIARADAKEMVAKIRHLPLRSARNLISAAK 661
+ + G+ + ++L +G + E +A A K++ +I+ + A L++ A
Sbjct: 6 LQVNGITMADVKKLRESGLHTAEAVAYAPRKDL-LEIKGISEAKADKLLNEAA 57
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 211
Score = 33.1 bits (75), Expect = 0.082
Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 19/129 (14%)
Query: 202 DRFPGTKEYKKQEKEDLIEALKEE-----------NDGKLSTNLEECIL-----YGVAYH 245
R ++ + + EA+ E ND + E + +A
Sbjct: 4 RRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 63
Query: 246 HADLTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQ 305
H + E + + ++ CT+ + G+++P II + F ++ Q
Sbjct: 64 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA--DHFGLAQLH-Q 120
Query: 306 MVGRAGRTG 314
+ GR GR+
Sbjct: 121 LRGRVGRSH 129
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 32.1 bits (72), Expect = 0.18
Identities = 15/155 (9%), Positives = 42/155 (27%), Gaps = 35/155 (22%)
Query: 210 YKKQEKED-LIEALKEENDG------------KLSTNLEECILYGVAYHHADLTAGERRL 256
E L L++ G ++ +L+ + ++
Sbjct: 8 AVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNKF-------RIGIVTATKKG 60
Query: 257 IEEAYLAGTLQIICCTST----LAAGVNLP--AQRVIIRDSYVGRDFISLNMYKQMVGRA 310
E ++ G + + T+ L G++LP + + ++ +
Sbjct: 61 DYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVG---------CPSFRVTIEDI 111
Query: 311 GRTGLQESGESIMLCKTMQDFLRFSSMMNAGPEPI 345
Q L + + + R + + +
Sbjct: 112 DSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEV 146
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 31.1 bits (70), Expect = 0.35
Identities = 15/82 (18%), Positives = 19/82 (23%), Gaps = 14/82 (17%)
Query: 249 LTAGERRLIEEAYLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYV-------GRDFISLN 301
L I T G NL +RV+ + GR
Sbjct: 66 LNRKTFEREYPTIKQKKPDFILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKG 125
Query: 302 MY-------KQMVGRAGRTGLQ 316
Q GR GR +
Sbjct: 126 PLRISASSAAQRRGRIGRNPNR 147
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 31.0 bits (69), Expect = 0.38
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 205 PGTKEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAG 264
P +E ++ +++++EA+ E ++G L LE + G A A EA G
Sbjct: 188 PEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKA---------FHEAVRRG 238
Query: 265 TLQIICCTSTL 275
L + S
Sbjct: 239 LLYPVALASGE 249
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 30.1 bits (67), Expect = 0.44
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 267 QIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGR 312
++ T L G VI ++ G+ Q GR GR
Sbjct: 80 VVVVATDALMTGFTGDFDSVIDCNTSDGKPQ-DAVSRTQRRGRTGR 124
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 30.0 bits (66), Expect = 0.74
Identities = 11/95 (11%), Positives = 30/95 (31%), Gaps = 1/95 (1%)
Query: 16 FKFYLEEYAGVKGQYPPTKRQLNKKSIYICTIEKGSKLIGSLIQENRIDEIGLIVIDEFH 75
+ Q I + I ++ + ++ L+ +DE H
Sbjct: 90 VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAH 149
Query: 76 MLNEPQRGPILEC-VVSKVLYLKKSIQIFAMSATI 109
+++ E + ++ ++ A++AT
Sbjct: 150 CISQWGHDFRPEYAALGQLRQRFPTLPFMALTATA 184
>d1avca2 a.65.1.1 (A:351-671) Annexin VI {Cow (Bos taurus) [TaxId:
9913]}
Length = 321
Score = 30.4 bits (68), Expect = 0.77
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 24/101 (23%)
Query: 208 KEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYH-------HADLTAGERRLIEEA 260
+ +K DL+ LK E G L+ + ++ Y E+ LIE
Sbjct: 53 QTFKSHFGRDLMADLKSELSGDLARLILGLMMPPAHYDAKQLKKAMEGAGTDEKALIE-- 110
Query: 261 YLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLN 301
I+ + A+ I +Y +L
Sbjct: 111 -------ILATRT--------NAEIQAINKAYKEDYHKTLE 136
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 28.7 bits (63), Expect = 1.1
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 62 RIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSAT 108
+I+ DE H + I + + + +AT
Sbjct: 91 SGGAYDIIICDECHSTDATSILGIGTVL--DQAETAGARLVVLATAT 135
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 264
Score = 29.8 bits (66), Expect = 1.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 54 IGSLIQEN-RIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSAT 108
+LIQE+ +GL++IDE H QR ++ K + MSAT
Sbjct: 193 THALIQEDVHFKNLGLVIIDEQHRFGVKQR--------EALMNKGKMVDTLVMSAT 240
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 256
Score = 29.4 bits (66), Expect = 1.3
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 568 YFASKVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGY 627
+ +F +++ EL ++ + + +M APN+ L+ G K+ A+ L AG
Sbjct: 105 KESEITEKFEKKIRELRELRRDVEREIEEVMEKIAPNMTELV---GAKVA-AKLLERAG- 159
Query: 628 SSLELIARADA 638
S+E + R A
Sbjct: 160 -SMERLVRLPA 169
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 28.5 bits (62), Expect = 1.4
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 57 LIQENRIDEIGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSAT 108
+++ R+ +I++DE H L+ + M+AT
Sbjct: 90 MLEPTRVVNWEVIIMDEAHFLDPASIAAR---GWAAHRARANESATILMTAT 138
>d1avca1 a.65.1.1 (A:10-350) Annexin VI {Cow (Bos taurus) [TaxId:
9913]}
Length = 341
Score = 29.2 bits (65), Expect = 1.9
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 208 KEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYHHADLTAGERRLIEEAYLAGTLQ 267
+ YK +DLI LK E L+ E I G+ A A E + +A
Sbjct: 51 QNYKSLYGKDLIADLKYE----LTGKFERLI-VGLMRPPAYADAKEIK---DAISGIGTD 102
Query: 268 IICCTSTLAAGVNLPAQRVIIRDSY 292
C LA+ N Q + +Y
Sbjct: 103 EKCLIEILASRTN--EQIHQLVAAY 125
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 26.8 bits (59), Expect = 3.1
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 3 HEKYQSLAKAAEEFKFYLEEYAGVKGQYPPTKRQLNK 39
+K + + E + + A + +P + K
Sbjct: 55 KKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK 91
>d1n00a_ a.65.1.1 (A:) Annexin GH1 {Cotton (Gossypium hirsutum)
[TaxId: 3635]}
Length = 318
Score = 28.4 bits (63), Expect = 3.3
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 208 KEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAYH 245
K Y + EDL++AL +E + L
Sbjct: 53 KTYAETYGEDLLKALDKELSNDFERLVLLWALDPAERD 90
>d2ie7a1 a.65.1.1 (A:2-319) Annexin V {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 318
Score = 28.4 bits (63), Expect = 3.3
Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 43/152 (28%)
Query: 208 KEYKKQEKEDLIEALKEENDGKLSTNLEECILYGVAY-----HHA--DLTAGERRLIEEA 260
+E+K DL+ +K E GK + + Y HA E+ L E
Sbjct: 52 EEFKTLFGRDLVNDMKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTE-- 109
Query: 261 YLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGE 320
II + P + I+ +Y + E
Sbjct: 110 -------IIASRT--------PEELRAIKQAY-------------------EEEYGSNLE 135
Query: 321 SIMLCKTMQDFLRFSSMMNAGPEPISSHMDPP 352
++ T + R ++ + +D
Sbjct: 136 DDVVGDTSGYYQRMLVVLLQANRDPDTAIDDA 167
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein
Prp31 {Human (Homo sapiens) [TaxId: 9606]}
Length = 249
Score = 27.8 bits (62), Expect = 4.0
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 572 KVYRFCEELPELWCYKQLLTDLPQTLMYCRAPNLRALMDLPGVKIGRARQLLNAGYSSLE 631
++ C+ EL K + + ++ M APNL ++ G A+ + AG L
Sbjct: 102 RLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIII---GASTA-AKIMGVAG--GLT 155
Query: 632 LIARADAKEM 641
+++ A +
Sbjct: 156 NLSKMPACNI 165
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 233
Score = 27.8 bits (61), Expect = 4.2
Identities = 8/43 (18%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 66 IGLIVIDEFHMLNEPQRGPILECVVSKVLYLKKSIQIFAMSAT 108
+GL+++DE H + ++ ++ ++ I ++AT
Sbjct: 178 LGLLIVDEEHRFGVRHK--------ERIKAMRANVDILTLTAT 212
>d1axna_ a.65.1.1 (A:) Annexin III {Human (Homo sapiens) [TaxId:
9606]}
Length = 323
Score = 26.9 bits (59), Expect = 8.0
Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 43/151 (28%)
Query: 208 KEYKKQEKEDLIEALKEENDGKLSTNLEECIL-----YGVAYHHA--DLTAGERRLIEEA 260
KEY+ ++L + LK + G + + + E LIE
Sbjct: 58 KEYQAAYGKELKDDLKGDLSGHFEHLMVALVTPPAVFDAKQLKKSMKGAGTNEDALIE-- 115
Query: 261 YLAGTLQIICCTSTLAAGVNLPAQRVIIRDSYVGRDFISLNMYKQMVGRAGRTGLQESGE 320
I+ + Q I +Y T ++S
Sbjct: 116 -------ILTTRT--------SRQMKDISQAY-------------------YTVYKKSLG 141
Query: 321 SIMLCKTMQDFLRFSSMMNAGPEPISSHMDP 351
+ +T DF + + G S +D
Sbjct: 142 DDISSETSGDFRKALLTLADGRRDESLKVDE 172
>d1dc1a_ c.52.1.11 (A:) Restriction endonuclease BsobI {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 27.2 bits (60), Expect = 8.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 657 ISAAKLHFITKMDKVEAMKNLIQN 680
IS F+T+ DK E++ NLI+N
Sbjct: 74 ISDKAKKFLTEDDKKESINNLIEN 97
>d1hm6a_ a.65.1.1 (A:) Annexin I {Pig (Sus scrofa) [TaxId: 9823]}
Length = 343
Score = 26.9 bits (59), Expect = 9.4
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 208 KEYKKQEKEDLIEALKEENDGKLSTNLEECILY 240
Y +++ + L EALK+ L+ +LEE L
Sbjct: 81 AAYLQEKGKPLDEALKKA----LTGHLEEVALA 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.387
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,449,264
Number of extensions: 114559
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 41
Length of query: 693
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 601
Effective length of database: 1,144,436
Effective search space: 687806036
Effective search space used: 687806036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.0 bits)