RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1588
(68 letters)
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 99.6 bits (249), Expect = 1e-26
Identities = 37/67 (55%), Positives = 47/67 (70%), Gaps = 6/67 (8%)
Query: 2 RFVEGHSSN----NRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVKDYNP 57
+ + SS N I H +D+LPFGGVG SGMGAYHGKYSFDTF+H++SCLVK N
Sbjct: 372 KILSNTSSGGVCVNDTIMHYTLDSLPFGGVGNSGMGAYHGKYSFDTFSHKRSCLVKSLN- 430
Query: 58 VLEALSA 64
+E L++
Sbjct: 431 -MEKLNS 436
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 83.7 bits (208), Expect = 4e-21
Identities = 27/47 (57%), Positives = 31/47 (65%)
Query: 6 GHSSNNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLV 52
G N ++ H + LPFGGVG SGMGAYHGK FDTF+H KS L
Sbjct: 380 GGVCVNDVLLHAAIPNLPFGGVGNSGMGAYHGKAGFDTFSHLKSVLK 426
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 77.2 bits (191), Expect = 1e-18
Identities = 29/43 (67%), Positives = 32/43 (74%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
N I H LPFGGVG SGMG+YHGKYSFDTF+H+KS L K
Sbjct: 385 NDTIMHLANPYLPFGGVGNSGMGSYHGKYSFDTFSHKKSILKK 427
>gnl|CDD|143455 cd07137, ALDH_F3FHI, Plant aldehyde dehydrogenase family 3 members
F1, H1, and I1 and related proteins. Aldehyde
dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1,
ALDH3H1, and ALDH3I1), and similar plant sequences, are
in this CD. In Arabidopsis thaliana, stress-regulated
expression of ALDH3I1 was observed in leaves and
osmotic stress expression of ALDH3H1 was observed in
root tissue, whereas, ALDH3F1 expression was not stress
responsive. Functional analysis of ALDH3I1 suggest it
may be involved in a detoxification pathway in plants
that limits aldehyde accumulation and oxidative stress.
Length = 432
Score = 75.9 bits (187), Expect = 3e-18
Identities = 29/55 (52%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 2 RFVEGHSSN----NRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLV 52
R V SS N + +DTLPFGGVG SG GAYHGK+SFD F+H+K+ L
Sbjct: 378 RIVAETSSGGVTFNDTVVQYAIDTLPFGGVGESGFGAYHGKFSFDAFSHKKAVLY 432
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 74.9 bits (185), Expect = 7e-18
Identities = 27/40 (67%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
N+ LI H VD PFGGVG SG GAYHGKY FDTFTH ++
Sbjct: 395 NDTLI-HVGVDNAPFGGVGDSGYGAYHGKYGFDTFTHERT 433
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 72.4 bits (178), Expect = 5e-17
Identities = 28/48 (58%), Positives = 30/48 (62%)
Query: 6 GHSSNNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
G N + H LPFGGVG SGMGAYHGKY FDTF+H K L K
Sbjct: 391 GAVVINDCVFHLLNPNLPFGGVGNSGMGAYHGKYGFDTFSHPKPVLNK 438
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 68.3 bits (168), Expect = 2e-15
Identities = 24/39 (61%), Positives = 26/39 (66%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
N + H D LPFGGVG SGMGAYHGK F TF+H K
Sbjct: 393 NDTLLHVAQDDLPFGGVGASGMGAYHGKEGFLTFSHAKP 431
>gnl|CDD|165847 PLN02203, PLN02203, aldehyde dehydrogenase.
Length = 484
Score = 67.8 bits (166), Expect = 2e-15
Identities = 30/64 (46%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 2 RFVEGHSSN----NRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVKDYNP 57
R + SS N I D+LPFGGVG SG G YHGKYSFDTF+H K+ L +
Sbjct: 388 RILSETSSGSVTFNDAIIQYACDSLPFGGVGESGFGRYHGKYSFDTFSHEKAVLRRSLLT 447
Query: 58 VLEA 61
E
Sbjct: 448 EFEF 451
>gnl|CDD|177831 PLN02174, PLN02174, aldehyde dehydrogenase family 3 member H1.
Length = 484
Score = 64.7 bits (157), Expect = 3e-14
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
N + H + TLPFGGVG SGMGAYHGK+SFD F+H+K+ L +
Sbjct: 402 NDIAVHLALHTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYR 444
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 56.5 bits (137), Expect = 3e-11
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 22 LPFGGVGMSGMGAYHGKYSFDTFTHRKSCLV 52
LPFGGV SG+G+YHG Y F F+H ++ L
Sbjct: 403 LPFGGVNNSGIGSYHGVYGFKAFSHERAVLR 433
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 56.1 bits (136), Expect = 3e-11
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 19 VDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLV 52
+ PFGGV SG+G G Y + +T K+ +
Sbjct: 399 EPSAPFGGVKQSGIGREGGPYGLEEYTEPKTVTI 432
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 54.9 bits (133), Expect = 9e-11
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 19 VDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLV 52
PFGGV SG+G G Y + +T K+ ++
Sbjct: 334 GPEAPFGGVKNSGIGREGGPYGLEEYTRTKTVVI 367
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 54.2 bits (131), Expect = 1e-10
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
N + LPFGGV SG+G GKY + FT K+ +K
Sbjct: 426 NDYTGGADIAYLPFGGVKQSGLGREGGKYGLEEFTEVKTVTIK 468
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 41.4 bits (98), Expect = 5e-06
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 19 VDTLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
+ LPFGG SG G GK + +T K+
Sbjct: 428 PEALPFGGFKQSGFGREGGKEGLEEYTETKT 458
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 39.1 bits (92), Expect = 4e-05
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 23 PFGGVGMSGMGAYHGKYSFDTFTHRK 48
PFGGV SG G + G S + FT +
Sbjct: 402 PFGGVKASGGGRFGGPASLEEFTEWQ 427
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 37.7 bits (88), Expect = 9e-05
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRK 48
+PFGGV SG G G++S + FT K
Sbjct: 420 HVPFGGVKASGFGREGGEWSMEEFTELK 447
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 37.5 bits (88), Expect = 1e-04
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
PFGGV SG+G G YS + +T K+
Sbjct: 424 RTPFGGVKASGIGREGGDYSLEFYTELKN 452
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 36.2 bits (84), Expect = 3e-04
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLV 52
N + +P LPFGG SG+G G+Y + +T K+ +
Sbjct: 415 NTFLDGSP--ELPFGGFKQSGIGRELGRYGVEEYTELKTVHL 454
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 36.3 bits (84), Expect = 4e-04
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 8 SSNNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRK 48
S N R H P PFGGV SG+G G YSFD +T K
Sbjct: 438 SQNVR---HLPT---PFGGVKASGIGREGGTYSFDFYTETK 472
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 35.9 bits (83), Expect = 5e-04
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 22 LPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
PFGG SG G G+ + D +T KS
Sbjct: 421 SPFGGYKQSGFGREMGREALDEYTEVKS 448
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 35.5 bits (82), Expect = 6e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
+PFGG MSG+G G+Y +T+T K+
Sbjct: 451 GVPFGGFKMSGIGRELGEYGLETYTQTKA 479
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 34.5 bits (80), Expect = 0.001
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLV 52
LPFGGV SG G HG F K+
Sbjct: 422 ALPFGGVKDSGGGRRHGAEGLREFCRPKAIAR 453
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 33.6 bits (77), Expect = 0.003
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVKDYNP 57
+PFGG MSG+G G YS + + K+ + NP
Sbjct: 499 AIPFGGYKMSGIGREKGIYSLNNYLQVKAVVTPLKNP 535
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 33.2 bits (76), Expect = 0.004
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
++PFGG MSG+G G Y+ + + K+
Sbjct: 445 SIPFGGYKMSGIGREKGIYALNNYLQVKA 473
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 32.3 bits (74), Expect = 0.007
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 23 PFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
PFGG MSG G G+Y +T K+ +K
Sbjct: 451 PFGGYKMSGNGRELGEYGLQEYTEVKTVTIK 481
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 32.4 bits (75), Expect = 0.008
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 22 LPFGGVGMSGMGAYHGKYSFDTFTHRK 48
PFGGV SG+G GK + + K
Sbjct: 421 APFGGVKESGLGREGGKEGLEEYLETK 447
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 32.4 bits (74), Expect = 0.008
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 15 SHTPVD-TLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
HT +D +PFGG+ SG+G G D +T KS +++
Sbjct: 437 MHTFLDPAVPFGGMKQSGIGREFGSAFIDDYTELKSVMIR 476
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 31.9 bits (73), Expect = 0.010
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 17 TPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLV 52
+PV+ +PFGG SG G +G + + +T K+ V
Sbjct: 420 SPVE-VPFGGYKQSGFGRENGTAALEHYTQLKTVYV 454
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 31.8 bits (73), Expect = 0.011
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 23 PFGGVGMSGMGAYHGKYSFDTFTHRKS 49
PFGG SG+G +G + F KS
Sbjct: 430 PFGGYKQSGLGRENGIEGLEEFLETKS 456
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 31.7 bits (73), Expect = 0.014
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 22 LPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
LPFGGV SG G G++ F + K+
Sbjct: 399 LPFGGVKRSGYGRELGRFGIREFVNIKT 426
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 31.7 bits (73), Expect = 0.015
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 23 PFGGVGMSGMGAYHGKYSFDTFTHRKS 49
PFGG SG+G G +T +
Sbjct: 417 PFGGHKQSGIGVEFGIEGLKEYTQTQV 443
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 31.5 bits (72), Expect = 0.015
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 20 DTLPFGGVGMSGMGAYHGKYSFDTFTHRK 48
D LPFGG SG+G +Y+ T K
Sbjct: 424 DNLPFGGFKKSGIGREGVRYTMLEMTEEK 452
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 31.4 bits (72), Expect = 0.017
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 23 PFGGVGMSGMGAYHGKYSFDTFTHRKS 49
PFGG SG G G+ + +T K+
Sbjct: 447 PFGGFKQSGFGRELGEEGLEEYTQVKA 473
>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like.
Salicylaldehyde dehydrogenase (DoxF, SaliADH,
EC=1.2.1.65) involved in the upper naphthalene catabolic
pathway of Pseudomonas strain C18 and other similar
sequences are present in this CD.
Length = 432
Score = 31.4 bits (72), Expect = 0.017
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
TLP GGV SG G ++GK+ D FT K
Sbjct: 401 TLPHGGVKSSGYGRFNGKWGIDEFTETKW 429
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 31.1 bits (71), Expect = 0.021
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 22 LPFGGVGMSGMGAYHGKYSFDTFT 45
+PFGG SG+G ++G+++ + FT
Sbjct: 433 VPFGGEKNSGLGRFNGEWALEEFT 456
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 31.2 bits (71), Expect = 0.024
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 22 LPFGGVGMSGMGAYHGKYS-FDTFTHRKS 49
LPFGGV SG G + D FT K+
Sbjct: 444 LPFGGVKKSGNGHREAGTTALDAFTEWKA 472
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 30.8 bits (70), Expect = 0.026
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 23 PFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
PFGG +SG+G G +S + +T + +K
Sbjct: 450 PFGGSKLSGIGREGGVHSLEFYTELTNVCIK 480
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 30.4 bits (69), Expect = 0.042
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 16 HTPVDTLPFGGVGMSGMGAYHGKYSF----DTFTHRKSCLV 52
+GG SG+G + S + FT +K+ +
Sbjct: 420 GGQQPGQSYGGFKQSGLGR---EASLEGMLEHFTQKKTVNI 457
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 30.3 bits (69), Expect = 0.043
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 22 LPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
L + GV SG G + +D T KS
Sbjct: 422 LAWTGVKDSGRGVTLSRLGYDQLTRPKS 449
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 29.8 bits (68), Expect = 0.061
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
N P D PF G SG+G + + T RK
Sbjct: 432 NSKCQRGP-DHFPFLGRKDSGIGTQGIGDALRSMTRRKG 469
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 29.7 bits (67), Expect = 0.078
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 15 SHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRK 48
S D +PFGGV SG+G Y+ + T K
Sbjct: 416 SAFRTDWMPFGGVKESGVGREGVPYAMEEMTEEK 449
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 29.6 bits (67), Expect = 0.079
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 23 PFGGVGMSGMGAYHG-KYSFDTFTHRK 48
PFGG+G SG G+ G +++ FT +
Sbjct: 413 PFGGMGASGNGSRFGGPANWEEFTQWQ 439
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 29.5 bits (67), Expect = 0.081
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 17 TPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLV 52
+P + +P GG SG+G +G + + +T KS V
Sbjct: 445 SPAE-MPVGGYKQSGIGRENGIATLEHYTQIKSVQV 479
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 29.5 bits (67), Expect = 0.083
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 1 MRFVEGHSSNNRLISHTP---VDTLPFGGVGMSGMG 33
++ +I+ + VD +P+GGV SG G
Sbjct: 399 LKAARELEVGGVMINDSSTFRVDHMPYGGVKESGTG 434
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 29.4 bits (67), Expect = 0.086
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 23 PFGGVGMSGMGAYHGKYSFDTFTHRKS 49
PFGG SG G G+Y + F KS
Sbjct: 437 PFGGYKQSGNGREWGRYGLEEFLEVKS 463
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 29.4 bits (66), Expect = 0.099
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 23 PFGGVGMSGMGAYHGKYSFDTFTHRKSCLVKDYN 56
PFGG MSG G G + D + KS + YN
Sbjct: 464 PFGGYKMSGFGRDQGMDALDKYLQVKSVVTPLYN 497
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 29.3 bits (66), Expect = 0.11
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTF 44
N LIS PFGGV SG+G KY D +
Sbjct: 455 NEGLISTE---VAPFGGVKQSGLGREGSKYGIDEY 486
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 29.1 bits (66), Expect = 0.11
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 23 PFGGVGMSGMGA 34
PFGG G+SG G
Sbjct: 476 PFGGWGLSGTGP 487
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 29.1 bits (66), Expect = 0.11
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
T PFGG SG G ++ D +T K+
Sbjct: 431 TTPFGGFKQSGNGRDKSLHALDKYTELKT 459
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 28.7 bits (65), Expect = 0.15
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 14 ISHTPVD-TLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
++ +D PFGG SG+G G D + KS
Sbjct: 432 VNGFRLDFGAPFGGFKQSGIGREGGPEGLDAYLETKS 468
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 28.4 bits (64), Expect = 0.18
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 22 LPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
LPFGGV SG G G + +T K+
Sbjct: 424 LPFGGVKKSGHGREKGLEALYNYTQTKT 451
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 28.4 bits (64), Expect = 0.19
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 19 VDTLPFGGVGMSGMGAYHGKYSFDTFTH 46
+D P GG+ SG+G HG +T
Sbjct: 422 IDA-PMGGMKDSGLGRRHGAEGLLKYTE 448
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 28.5 bits (64), Expect = 0.20
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 23 PFGGVGMSGMGAYHGKYSFDTFTHRK 48
PFGGV SG+G KY + + K
Sbjct: 423 PFGGVKQSGLGREGSKYGIEEYLETK 448
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 28.3 bits (64), Expect = 0.22
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 5/22 (22%)
Query: 23 PFGGVGMSGMGAYHG-----KY 39
P GG+ SG+G HG KY
Sbjct: 461 PMGGMKDSGLGRRHGAEGLLKY 482
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 28.3 bits (64), Expect = 0.23
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 22 LPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVKDY 55
FGG +G G G ++ + R +C + +Y
Sbjct: 445 GAFGGEKETGGGRESGSDAWKQYMRRSTCTI-NY 477
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 27.9 bits (63), Expect = 0.26
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 23 PFGGVGMSGMGAYHGKYSFDTFTHRKS 49
PFGG SG+G +G + +T KS
Sbjct: 428 PFGGFKDSGIGRENGIEAIREYTQTKS 454
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and catalyzes
the NAD+-dependent reduction of succinylglutamate
semialdehyde into succinylglutamate.
Length = 431
Score = 27.6 bits (62), Expect = 0.33
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 21 TLPFGGVGMSG 31
T PFGGVG+SG
Sbjct: 401 TAPFGGVGLSG 411
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 27.5 bits (61), Expect = 0.43
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 22 LPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
+PFGG SG+G G+Y+ + +T K+
Sbjct: 449 VPFGGYKQSGIGRELGEYALENYTQIKA 476
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 27.6 bits (62), Expect = 0.43
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGA 34
NR I+ V PFGG MSG G+
Sbjct: 468 NRKITGALVGRQPFGGFKMSGTGS 491
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 27.2 bits (61), Expect = 0.51
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 13 LISHTP---VDTLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
+I+ P VD +P+GGV SG+G +Y+ + T +
Sbjct: 410 VINDVPTFRVDHMPYGGVKDSGIGREGVRYAIEEMTEPRL 449
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 26.8 bits (59), Expect = 0.78
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTF 44
N +IS+ + PFGG+ SG+G KY + +
Sbjct: 441 NTGIISN---EVAPFGGIKASGLGREGSKYGIEDY 472
>gnl|CDD|227186 COG4849, COG4849, Predicted nucleotidyltransferase [General
function prediction only].
Length = 269
Score = 26.5 bits (58), Expect = 0.85
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 13 LISHTPVDTLPFGGV 27
LI+ PVD +PFG V
Sbjct: 85 LIADRPVDLVPFGEV 99
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 26.4 bits (58), Expect = 0.99
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGAYHG 37
NR I+ V PFGG MSG + G
Sbjct: 467 NRNITGAIVGYQPFGGFKMSGTDSKAG 493
>gnl|CDD|225083 COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein
kinase) [Signal transduction mechanisms].
Length = 146
Score = 26.2 bits (58), Expect = 0.99
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 17 TPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
T + L GG+G+ K D F++ +S
Sbjct: 100 TTAEGLQEGGLGLFLA-----KRLMDEFSYERS 127
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 26.2 bits (58), Expect = 1.2
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 16 HTP--VDTLPFGGVGMSGMG 33
HT VD +PF G SG G
Sbjct: 417 HTAFRVDWMPFAGRRQSGYG 436
>gnl|CDD|181826 PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed.
Length = 457
Score = 26.2 bits (58), Expect = 1.2
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 22 LPFGGVGMSGMG---AYHGKYSF 41
LPFGGV SG G + HG F
Sbjct: 426 LPFGGVKRSGYGRELSAHGIREF 448
>gnl|CDD|181873 PRK09457, astD, succinylglutamic semialdehyde dehydrogenase;
Reviewed.
Length = 487
Score = 26.1 bits (58), Expect = 1.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 21 TLPFGGVGMSG 31
PFGGVG SG
Sbjct: 439 AAPFGGVGASG 449
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 26.0 bits (57), Expect = 1.7
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 2 RFVEGHSSN-----NRLISHTPVDTLPFGGVGMSGMGAYHG 37
R++E H+ NR V PFGG G+SG G G
Sbjct: 447 RWIEKHARVGNCYVNRNQVGAVVGVQPFGGQGLSGTGPKAG 487
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 25.7 bits (57), Expect = 1.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 22 LPFGGVGMSGMGAYHGK 38
LPFGGV SG G + G+
Sbjct: 433 LPFGGVKGSGFGRFAGE 449
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 25.6 bits (57), Expect = 2.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 23 PFGGVGMSGMG 33
PFGG G+SG G
Sbjct: 987 PFGGEGLSGTG 997
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 25.4 bits (56), Expect = 2.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMG 33
NR I V PFGG G+SG G
Sbjct: 535 NRNIVGAVVGVQPFGGEGLSGTG 557
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 25.6 bits (56), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
T+PFGG SG G ++ + FT K+
Sbjct: 460 TVPFGGYKQSGNGRDKSLHALEKFTELKT 488
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 25.7 bits (57), Expect = 2.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 11 NRLISHTPVDTLPFGGVGMSG 31
NR + V PFGG MSG
Sbjct: 470 NRGCTGAIVGYHPFGGFNMSG 490
>gnl|CDD|176254 cd08294, leukotriene_B4_DH_like, 13-PGR is a bifunctional enzyme
with delta-13 15-prostaglandin reductase and leukotriene
B4 12 hydroxydehydrogenase activity. Prostaglandins and
related eicosanoids are metabolized by the oxidation of
the 15(S)-hydroxyl group of the NAD+-dependent (type I
15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH)
followed by reduction by NADPH/NADH-dependent (type II
15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to
15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a
bifunctional enzyme, since it also has leukotriene B(4)
12-hydroxydehydrogenase activity. These 15-PGDH and
related enzymes are members of the medium chain
dehydrogenase/reductase family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 329
Score = 25.3 bits (56), Expect = 2.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 21 TLPFGGVGMSGMGAYHG 37
+L G +GM G+ AY G
Sbjct: 118 SLALGVLGMPGLTAYFG 134
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 25.4 bits (56), Expect = 2.5
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 23 PFGGVGMSGMGAYHG-KYSFDTFTHRKS 49
PFGGV SG+G G + + T+ K+
Sbjct: 421 PFGGVKDSGLGGKEGVREAMKEMTNVKT 448
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 25.4 bits (56), Expect = 2.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 22 LPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
PFGGV SG+G ++T K+
Sbjct: 424 APFGGVKNSGIGREECLEELLSYTQEKN 451
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 25.2 bits (55), Expect = 2.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGAYHG 37
NR I+ V PFGG +SG A G
Sbjct: 456 NRKITGALVGVQPFGGFKLSGTNAKTG 482
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 25.2 bits (56), Expect = 2.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 19 VDTLPFGGVGMSGMG 33
V PFGG G+SG G
Sbjct: 991 VGVQPFGGQGLSGTG 1005
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 24.9 bits (55), Expect = 3.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMG 33
NR + V PFGG G+SG G
Sbjct: 1072 NRNMVGAVVGVQPFGGEGLSGTG 1094
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 24.6 bits (54), Expect = 5.2
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 22 LP--FGGVGMSGMGAYHG 37
LP G VGM +G Y G
Sbjct: 172 LPKILGPVGMEMLGEYRG 189
>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated.
Length = 646
Score = 24.0 bits (53), Expect = 6.7
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 4/20 (20%)
Query: 15 SHTPVDTLPFGGVGMSGMGA 34
SHTP GG+GM +GA
Sbjct: 120 SHTPTA----GGLGMLAIGA 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.412
Gapped
Lambda K H
0.267 0.0820 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,400,496
Number of extensions: 240837
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 81
Length of query: 68
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 29
Effective length of database: 9,207,796
Effective search space: 267026084
Effective search space used: 267026084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)