RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1588
(68 letters)
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 86.5 bits (215), Expect = 3e-22
Identities = 28/43 (65%), Positives = 36/43 (83%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
N +I H + +LPFGGVG SGMG+YHGK SF+TF+HR+SCLV+
Sbjct: 405 NDVIVHITLHSLPFGGVGNSGMGSYHGKKSFETFSHRRSCLVR 447
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 85.9 bits (213), Expect = 6e-22
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
N ++ H LPFGG+G SGMG YHG +S+ TFTH+KS +
Sbjct: 414 NGVMLHAFSPYLPFGGIGASGMGEYHGHFSYLTFTHKKSVRIV 456
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 40.7 bits (96), Expect = 6e-06
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
N+ ++ P + FGG SG+G ++G ++ + FT +
Sbjct: 443 NDLTVNDEP--HVMFGGSKNSGLGRFNGDWAIEEFTTDRW 480
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 40.2 bits (95), Expect = 7e-06
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
PFGGV SG G Y+ D +T K+ +
Sbjct: 472 PTPFGGVKGSGDRREGGTYALDFYTDLKTIALP 504
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 38.7 bits (91), Expect = 3e-05
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRK 48
N++ ++ +P + FGG SG+G + + + FT K
Sbjct: 436 NDQSVNDSPN--IAFGGNKASGVGRFGNPWVVEEFTVTK 472
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 38.3 bits (90), Expect = 3e-05
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 15 SHTPVDT-LPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
+H + + +P GG +SG G Y + +T + +VK
Sbjct: 455 THFMLVSEMPHGGQKLSGYGKDMSLYGLEDYTVVRHVMVK 494
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 38.3 bits (90), Expect = 4e-05
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 15 SHTPVDT-LPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
+H + +P GG+ SG G Y+ + +T + ++
Sbjct: 457 THFMLTNEMPHGGIKQSGYGKDMSVYALEDYTAVRHIMIN 496
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 38.3 bits (90), Expect = 4e-05
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
N + D PF GV SG+G K S + T +
Sbjct: 441 NAKTERGP--DHFPFLGVKKSGLGVQGIKPSLLSMTRERV 478
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 37.9 bits (89), Expect = 6e-05
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVKDYNPVLEALSAKN 66
PFGG MSG G G+Y +T K+ VK + KN
Sbjct: 462 QSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVK--------VPQKN 499
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 37.6 bits (88), Expect = 6e-05
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
PFGG SG G G+ + + + K+ +
Sbjct: 484 AAPFGGFKQSGFGKDLGEAALNEYLRIKTVTFE 516
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 37.5 bits (88), Expect = 6e-05
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
LP GG SG+G G+Y FD ++ K V
Sbjct: 465 ELPIGGYKKSGLGRELGRYGFDEYSQFKGVHVT 497
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 37.5 bits (88), Expect = 7e-05
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
PFGG MSG G G+Y F +T K+ +K
Sbjct: 463 QCPFGGFKMSGNGRELGEYGFHEYTEVKTVTIK 495
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 37.5 bits (88), Expect = 7e-05
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
NN+ T PF G SG G KYS + T KS
Sbjct: 432 NNKTQRGTDN--FPFLGAKKSGAGIQGVKYSIEAMTTVKS 469
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 37.2 bits (87), Expect = 1e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 22 LPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
+PFGG SG G + + + ++ K+ V
Sbjct: 456 IPFGGSKQSGFGRENSAAALEHYSELKTVYVS 487
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 37.1 bits (87), Expect = 1e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
+P GG SG+G +G + +T KS V+
Sbjct: 450 EMPVGGYKQSGVGRENGLTTLAHYTRIKSVQVE 482
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 36.4 bits (85), Expect = 2e-04
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 22 LPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
+PFGG MSG G +G+ + D ++ K+ +V+
Sbjct: 464 VPFGGYKMSGFGRENGQATVDYYSQLKTVIVE 495
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 36.0 bits (84), Expect = 2e-04
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVKDYNPVLEALS 63
N +L PFGG+G SG Y+ D + + L + L+
Sbjct: 435 NKQLTGAASS--APFGGIGASGNHRPSAYYAADYCAYPVASLESPSVSLPATLT 486
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 36.0 bits (84), Expect = 2e-04
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 21 TLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
PFGG SG+G +G + FT +KS
Sbjct: 449 GSPFGGYKNSGIGRENGPEGVEHFTQQKS 477
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 36.0 bits (84), Expect = 2e-04
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 22 LPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
P+GGV SG G G++ D + K
Sbjct: 457 APWGGVKRSGFGRELGEWGLDNYLSVKQ 484
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 35.6 bits (83), Expect = 3e-04
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVKDYNPVLEAL 62
N R I+ + LPFGG+ SG G F + + N E L
Sbjct: 417 NGRWIT-SGE--LPFGGIKKSGYGRELSGLGLMAFVNEHLVIDVTKNNQAENL 466
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 35.6 bits (83), Expect = 4e-04
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 22 LPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
P+GG SG+G GK + + K
Sbjct: 478 APWGGYKQSGIGRELGKEGLEEYLVSKH 505
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 35.2 bits (82), Expect = 5e-04
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGAYHGK-YSFDTFTHRKSCLVK 53
NR I+ V PFGG +SG A G F K+ +
Sbjct: 472 NRKITGALVGVQPFGGFKLSGTNAKTGALDYLRLFLEMKAVAER 515
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 35.2 bits (82), Expect = 5e-04
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 19 VDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
+ PFGG SG+ Y+ + T K+ +
Sbjct: 457 IGYYPFGGRKKSGVFREGIGYAVEAVTAYKTIVFN 491
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 34.0 bits (79), Expect = 0.001
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRK 48
N S + FGGV SG G + F + +
Sbjct: 420 NGYSAS-DAR--VAFGGVKKSGFGRELSHFGLHEFCNVQ 455
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 33.7 bits (78), Expect = 0.001
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGAYH-GKYSFDTFTHRKS 49
NR + V PFGG MSG + G K+
Sbjct: 472 NRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAKT 511
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 33.7 bits (78), Expect = 0.001
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 23 PFGGVGMSGMGAYHGKYSFDTFTHRKS 49
PFGG SG+G G Y + F KS
Sbjct: 446 PFGGYKQSGLGREWGDYGIEEFLEVKS 472
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 33.7 bits (78), Expect = 0.002
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 23 PFGGVGMSGMGAYHGKYSFDTFTHRKS 49
FGGV SG G + F K+
Sbjct: 467 YFGGVKFSGRAREGGLWGIKEFLDTKA 493
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 33.3 bits (77), Expect = 0.002
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 23 PFGGVGMSGMGAYHGKYSFDTFTHRKSCLVKDY 55
FGG +G G G ++ + R +C + +Y
Sbjct: 468 AFGGEKHTGGGRESGSDAWKQYMRRSTCTI-NY 499
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 32.9 bits (76), Expect = 0.003
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 19 VDTLPFGGVGMSGMGAYHGKYSFDTFTHRK 48
D +PFGGV SG+G KY+ + ++ K
Sbjct: 429 QDNMPFGGVKKSGLGREGVKYAMEEMSNIK 458
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 32.3 bits (74), Expect = 0.005
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 17 TPVDTLPFGGVGMSGMGA-YHGKYSFDTFTHRKS 49
+ GG G +G G G + + R +
Sbjct: 481 NVMPMSLHGGPGRAGGGEELGGLRALAFYHRRSA 514
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 31.3 bits (72), Expect = 0.012
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKS-CL 51
N +IS+ PFGG+ SG+G KY + + K C+
Sbjct: 440 NTGIISNEVA---PFGGIKASGLGREGSKYGIEDYLEIKYMCI 479
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 31.0 bits (71), Expect = 0.016
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKS-CL 51
N LIS+ PFGGV SG+G Y D + K C+
Sbjct: 443 NTGLISNEVA---PFGGVKQSGLGREGSHYGIDDYVVIKYLCV 482
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 31.0 bits (71), Expect = 0.016
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKS-CL 51
N LIS PFGGV SG+G KY D + K C
Sbjct: 445 NEGLISSVEC---PFGGVKQSGLGREGSKYGIDEYLELKYVCY 484
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 30.6 bits (70), Expect = 0.018
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKS-CL 51
N LIS+ PFGGV SG+G KY + + K C
Sbjct: 461 NTGLISNEVA---PFGGVKQSGLGREGSKYGIEEYLETKYICS 500
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 30.6 bits (70), Expect = 0.019
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRK 48
N + G SG G GK+ + + +K
Sbjct: 447 NRGMGEQHQG---FHNGWKQSGFGGEDGKFGLEQYLEKK 482
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 30.6 bits (70), Expect = 0.021
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 10 NNRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRK 48
N PFGG+ SG+G G F +
Sbjct: 443 NTGTGPTPEA---PFGGMKASGIGREGGLEGLFEFVEAQ 478
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 30.4 bits (69), Expect = 0.027
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGA-YHGKYSFDTFTHRKS 49
NR + V+ PFGG MSG+G G F +
Sbjct: 966 NRNNTGALVERQPFGGARMSGVGTKAGGPDYLLHFMDPRV 1005
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 30.2 bits (69), Expect = 0.032
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 23 PFGGVGMSGMGAYHGKYSFDTFTHRK 48
G SG+G GK+ + +
Sbjct: 448 FHAGWRKSGIGGADGKHGLHEYLQTQ 473
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.098
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 17/35 (48%)
Query: 23 PFGGV---GMSGMGAYHGKYSFDTFTHRKSCLVKD 54
P V G+ G G K+ + D
Sbjct: 149 PAKNVLIDGVLGSG--------------KTWVALD 169
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 28.6 bits (64), Expect = 0.12
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 11 NRLISHTPVDTLPFGGVGMSGMGA 34
NR + V PFGG G+SG G
Sbjct: 943 NRNMIGAVVGVQPFGGNGLSGTGP 966
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 25.3 bits (56), Expect = 1.6
Identities = 6/11 (54%), Positives = 6/11 (54%)
Query: 23 PFGGVGMSGMG 33
PFGG SG
Sbjct: 519 PFGGARASGTN 529
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.2 bits (52), Expect = 3.8
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 11/33 (33%)
Query: 12 RLISHTPVD---------T--LPFGGVGMSGMG 33
I PV T L FG G SG+G
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGASGLG 513
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition,
immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo
sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H*
2qsc_H*
Length = 248
Score = 24.0 bits (53), Expect = 4.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 50 CLVKDYNP 57
CLVKDY P
Sbjct: 163 CLVKDYFP 170
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 23.8 bits (52), Expect = 5.2
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 4/20 (20%)
Query: 15 SHTPVDTLPFGGVGMSGMGA 34
SHTP GG+G +G
Sbjct: 165 SHTPN----GGGLGGICIGV 180
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 23.7 bits (52), Expect = 6.2
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 25 GGVGMSGMGAYHG 37
G +GM G+ + G
Sbjct: 137 GAIGMPGLTSLIG 149
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure,
peptide-carbohydrate mimicry, VA design, immune system;
1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B*
1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Length = 220
Score = 23.2 bits (51), Expect = 7.1
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 50 CLVKDYNP 57
CLVK Y P
Sbjct: 147 CLVKGYFP 154
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto
reductase; rossmann fold, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Cavia
porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A*
2dm6_A* 1zsv_A 2y05_A*
Length = 333
Score = 23.3 bits (51), Expect = 8.9
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 25 GGVGMSGMGAYHG 37
G +GM G+ AY G
Sbjct: 124 GTIGMPGLTAYFG 136
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 23.3 bits (51), Expect = 9.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 25 GGVGMSGMGAYHG 37
G +GM GM AY G
Sbjct: 134 GLLGMPGMTAYAG 146
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC;
1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H
2mcp_H*
Length = 220
Score = 22.8 bits (50), Expect = 9.7
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 50 CLVKDYNP 57
CL+ DY P
Sbjct: 144 CLIHDYFP 151
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system
complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB:
3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H
3r06_B 3r08_H
Length = 253
Score = 22.9 bits (50), Expect = 9.7
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 50 CLVKDYNP 57
CLVK Y P
Sbjct: 146 CLVKGYFP 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.412
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,041,779
Number of extensions: 46971
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 51
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)