RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1588
         (68 letters)



>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 446

 Score = 67.3 bits (163), Expect = 9e-16
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query: 11  NRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
           N +I H  V TLPFGGVG SGMGAYHGK SF+TF+HR+SCLVK
Sbjct: 387 NDVIVHITVPTLPFGGVGNSGMGAYHGKKSFETFSHRRSCLVK 429


>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
           {Sheep (Ovis aries) [TaxId: 9940]}
          Length = 494

 Score = 62.7 bits (152), Expect = 3e-14
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 14  ISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
                    PFGG  MSG G   G+Y F  +T  K+  +K
Sbjct: 449 CYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVTIK 488


>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
           {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
          Length = 494

 Score = 61.6 bits (149), Expect = 9e-14
 Identities = 14/39 (35%), Positives = 17/39 (43%)

Query: 15  SHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
                   PFGG  MSG G   G+Y    +T  K+  VK
Sbjct: 450 YDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVK 488


>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW
           {Escherichia coli [TaxId: 562]}
          Length = 474

 Score = 60.6 bits (146), Expect = 2e-13
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 15  SHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
               V  +P GG  +SG G     Y  + +T  +  +VK
Sbjct: 435 HFMLVSEMPHGGQKLSGYGKDMSLYGLEDYTVVRHVMVK 473


>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
           {Baltic cod (Gadus callarias) [TaxId: 8053]}
          Length = 503

 Score = 60.1 bits (145), Expect = 3e-13
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 16  HTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
                 +PFGG  MSG G  +G+ + D ++  K+ +V+
Sbjct: 458 SISPVEVPFGGYKMSGFGRENGQATVDYYSQLKTVIVE 495


>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
           {Streptococcus mutans [TaxId: 1309]}
          Length = 474

 Score = 59.5 bits (143), Expect = 5e-13
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 15  SHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
           +    D  PF G   SG G    KYS +  T  KS +  
Sbjct: 434 TQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVFD 472


>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
           glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
           Thermoproteus tenax [TaxId: 2271]}
          Length = 499

 Score = 59.2 bits (142), Expect = 5e-13
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 11  NRLISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKSCLVK 53
           N +  H  +   PFGG   SG+      Y+ +  T  K+ +  
Sbjct: 448 NDMPRH-GIGYYPFGGRKKSGVFREGIGYAVEAVTAYKTIVFN 489


>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
           {Thermus thermophilus [TaxId: 274]}
          Length = 516

 Score = 54.5 bits (130), Expect = 3e-11
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 11  NRLISHTPVDTLPFGGVGMSGMGAYHGKYSF-DTFTHRKS 49
           NR I+   V   PFGG  +SG  A  G   +   F   K+
Sbjct: 472 NRKITGALVGVQPFGGFKLSGTNAKTGALDYLRLFLEMKA 511


>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 414

 Score = 37.0 bits (84), Expect = 5e-05
 Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 4/45 (8%)

Query: 15  SHTPVDTLPFGGVGMSGMGA----YHGKYSFDTFTHRKSCLVKDY 55
           S    D   FG     G+        G       T  K  ++ +Y
Sbjct: 366 STRFTDGGQFGFGAEIGISTQRFHARGPVGLRELTTYKFVVLGEY 410


>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
           {Vibrio harveyi [TaxId: 669]}
          Length = 504

 Score = 27.0 bits (58), Expect = 0.16
 Identities = 4/36 (11%), Positives = 11/36 (30%), Gaps = 1/36 (2%)

Query: 14  ISHTPVDTLPFGGVGMSGMGAYHGKYSFDTFTHRKS 49
           + +  V   P+     S   +  G  +   +    +
Sbjct: 440 VGYAMVHGGPYPASTHSASTSV-GAEAIHRWLRPVA 474


>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein),
          gamma chain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 68

 Score = 24.3 bits (53), Expect = 0.76
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 1  MRFVEGHSSNNRLISHTPVDTLPF 24
            +VE  S  + L+   P D  PF
Sbjct: 41 RDYVEERSGEDPLVKGIPEDKNPF 64


>d3b77a1 b.55.1.13 (A:14-203) Uncharacterized protein Exig2160
           {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
          Length = 190

 Score = 22.5 bits (48), Expect = 6.0
 Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)

Query: 38  KYSFDTFT-HRKSCLVKDYNPVLE 60
           + SFD    H      KD+    E
Sbjct: 163 QESFDWLQGHYYKWNQKDFGSFYE 186


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 252,940
Number of extensions: 8932
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 12
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)