BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15881
         (248 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From
          Mycobacterium Tuberculosis
 pdb|3HWK|B Chain B, Crystal Structure Of Methylcitrate Synthase From
          Mycobacterium Tuberculosis
 pdb|3HWK|C Chain C, Crystal Structure Of Methylcitrate Synthase From
          Mycobacterium Tuberculosis
 pdb|3HWK|D Chain D, Crystal Structure Of Methylcitrate Synthase From
          Mycobacterium Tuberculosis
 pdb|3HWK|E Chain E, Crystal Structure Of Methylcitrate Synthase From
          Mycobacterium Tuberculosis
 pdb|3HWK|F Chain F, Crystal Structure Of Methylcitrate Synthase From
          Mycobacterium Tuberculosis
 pdb|3HWK|G Chain G, Crystal Structure Of Methylcitrate Synthase From
          Mycobacterium Tuberculosis
 pdb|3HWK|H Chain H, Crystal Structure Of Methylcitrate Synthase From
          Mycobacterium Tuberculosis
          Length = 414

 Score = 31.2 bits (69), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 24 EAQTRRPGNSKSPSASPSAITLLSYHEAPTHLQFNPYILSGYRGYLSTKMCIESIFWMTN 83
          EAQT+ PG+   P A+  ++       APT +   P I  G  G +     I  +   TN
Sbjct: 13 EAQTQGPGSMTGPLAAARSVAATKSMTAPT-VDERPDIKKGLAGVVVDTTAISKVVPQTN 71


>pdb|4EKC|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
          (rgs2) In Complex With Murine Galpha-q(r183c)
 pdb|4EKC|D Chain D, Structure Of Human Regulator Of G Protein Signaling 2
          (rgs2) In Complex With Murine Galpha-q(r183c)
 pdb|4EKD|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
          (rgs2) In Complex With Murine Galpha-q(r183c)
          Length = 137

 Score = 28.5 bits (62), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 39 SPSAITLLSYHEAPTHLQFNPYILSGYRGYLSTKMCIESI-FWMTNE 84
          SPS      + EA   L  + Y L+ +R +L ++ C E+I FW+  E
Sbjct: 5  SPSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACE 51


>pdb|2AF0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
          Of Rgs2
          Length = 146

 Score = 27.3 bits (59), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 37 SASPSAITLLSYHEAPTHLQFNPYILSGYRGYLSTKMCIESI-FWMTNE 84
          S  PS      + EA   L  + Y L+ +R +L ++ C E+I FW+  E
Sbjct: 12 SMKPSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACE 60


>pdb|2Q7Z|A Chain A, Solution Structure Of The 30 Scr Domains Of Human Complement
            Receptor 1
          Length = 1931

 Score = 27.3 bits (59), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 29   RPGNSKSPSASPSAITLLSYH--EAPTHLQFNPYILSGYRGYLSTKMCIESIFWMTNE 84
            R G+ K+P   P A   +  +  E P     N     GY G + +  C+E++ W + E
Sbjct: 1351 RAGHCKTPEQFPFASPTIPINDFEFPVGTSLNYECRPGYFGKMFSISCLENLVWSSVE 1408


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.138    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,060,941
Number of Sequences: 62578
Number of extensions: 259012
Number of successful extensions: 505
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 4
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)