Query psy15881
Match_columns 248
No_of_seqs 179 out of 1388
Neff 6.5
Searched_HMMs 46136
Date Sat Aug 17 00:00:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0748|consensus 100.0 2.2E-56 4.7E-61 403.4 16.9 200 39-243 5-279 (286)
2 PF03006 HlyIII: Haemolysin-II 100.0 1.2E-42 2.5E-47 300.6 13.9 148 79-227 1-221 (222)
3 COG1272 Predicted membrane pro 100.0 1.4E-32 3.1E-37 240.2 16.2 159 55-233 1-221 (226)
4 TIGR01065 hlyIII channel prote 100.0 5.1E-32 1.1E-36 234.2 15.8 139 83-232 1-201 (204)
5 PRK15087 hemolysin; Provisiona 100.0 5.9E-29 1.3E-33 217.4 15.4 140 79-233 11-214 (219)
6 KOG4243|consensus 99.3 1.5E-11 3.3E-16 107.0 8.2 84 82-168 84-173 (298)
7 PF05875 Ceramidase: Ceramidas 94.6 1.2 2.6E-05 39.7 13.5 68 83-163 25-92 (262)
8 PF13965 SID-1_RNA_chan: dsRNA 90.3 5.9 0.00013 39.7 13.0 36 198-238 524-559 (570)
9 PF04080 Per1: Per1-like ; In 88.2 5.4 0.00012 36.2 10.1 73 75-166 56-128 (267)
10 KOG2970|consensus 80.1 14 0.0003 34.2 8.9 38 122-165 142-179 (319)
11 COG3125 CyoD Heme/copper-type 64.2 48 0.001 26.2 7.4 17 88-104 17-33 (111)
12 PF14145 YrhK: YrhK-like prote 48.7 89 0.0019 21.7 6.7 45 84-134 5-49 (59)
13 PF06127 DUF962: Protein of un 40.8 1.3E+02 0.0027 22.7 6.3 25 80-104 13-37 (95)
14 PF12036 DUF3522: Protein of u 39.3 2.4E+02 0.0052 23.9 8.9 20 187-206 131-150 (186)
15 PHA02965 hypothetical protein; 36.1 21 0.00045 33.7 1.5 25 37-61 31-55 (466)
16 PF14619 SnAC: Snf2-ATP coupli 36.1 15 0.00032 26.7 0.5 16 43-58 18-33 (74)
17 PF09604 Potass_KdpF: F subuni 24.1 48 0.001 19.2 1.1 12 189-200 14-25 (25)
18 KOG3614|consensus 23.6 4E+02 0.0086 29.8 8.5 81 85-167 792-878 (1381)
19 KOG3150|consensus 20.4 1.1E+02 0.0024 25.8 3.1 48 142-190 117-178 (182)
No 1
>KOG0748|consensus
Probab=100.00 E-value=2.2e-56 Score=403.43 Aligned_cols=200 Identities=38% Similarity=0.604 Sum_probs=166.6
Q ss_pred CCCCccccccccCCcccccCCccccccCCCCCHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--ccccch
Q psy15881 39 SPSAITLLSYHEAPTHLQFNPYILSGYRGYLSTKMCIESIFWMTNETINIWSHIFGWMLFLALTLYDLFLLN--FEASVF 116 (248)
Q Consensus 39 ~~~~~~ll~~~elP~~~~~N~yI~tGYR~~~s~~~cl~Slf~~hNEt~NiwTHllg~i~~l~~~~~~~~~~~--~~~~~~ 116 (248)
..++++++++||+|+|+||||||++|||+..|.++|+||+|++||||+|||||++|+++++.+.++...... ...+..
T Consensus 5 ~~~~~~l~~~~~lP~~~~dn~yi~~gyR~~~s~~~c~~S~f~~hNEt~NiwTHLlg~i~f~~~~~~~~~~~~~~~~~~~~ 84 (286)
T KOG0748|consen 5 LLKRPRLLPWDELPEWLKDNEYILTGYRPGSSFRACFKSIFQWHNETLNIWTHLLGFILFLFLLILFMPRVLLPVDSHLS 84 (286)
T ss_pred cccccccCChhhCCHHHhcCcceeCccCCCCCHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHcccccccccccch
Confidence 556789999999999999999999999966899999999999999999999999999999988776543221 112222
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHhchhcchhhHHHHHHHHHH----------------------H----
Q psy15881 117 DKFIVGLLLGCFQICMVTSTLYHVFSCKSERHFHNFLTFDLFGIALSLLGYTT----------------------C---- 170 (248)
Q Consensus 117 d~~~~~if~~~~~~~l~~StlyH~~~~~S~~~~~~~~~lD~~gI~l~I~GsYt----------------------~---- 170 (248)
+. +.+|..+ ++++|++||+++|||++.++.|.++||+||+++|.||+. +
T Consensus 85 ~~--~~lf~~~---~~~~S~~~H~~~~~s~~~~~~~~~lDY~GIs~li~gS~~~~~yy~f~c~~~~~~iy~~~~~~lgi~ 159 (286)
T KOG0748|consen 85 EK--IFLFFLG---CLLLSSLYHLFSCHSEKVSRFFLKLDYAGISLLIIGSFLPIIYYAFYCHPFFRLIYLPIILVLGLL 159 (286)
T ss_pred HH--HHHHHHH---HHHHHHHHHHHhcccHHHHHHHHHccHHhhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 33 3444444 334499999999999999999999999999999999850 0
Q ss_pred -----------------HH------------------------------HHHHHHHHHHHHHhhhhheeeecCCCccCCC
Q psy15881 171 -----------------SR------------------------------MLLPRVMGMYGISGLAFLIYITRFPECFFTG 203 (248)
Q Consensus 171 -----------------~~------------------------------~~lp~~~~~~~~~~~G~~~Y~~r~PEr~~PG 203 (248)
.+ ..+|.+..++++|++|++||++|+||||+||
T Consensus 160 ~~~~~l~~~~~~~~~r~~R~~~f~~~~~~~i~P~~h~~~~~g~~~~~~~~~~~~~~~~~~~yi~ga~fY~~riPER~~PG 239 (286)
T KOG0748|consen 160 AIFVSLSDKFRTPKRRPLRAGVFLLLGLSGILPLLHRLILFGGRGPEVVIALGYVILMAVLYLLGALFYATRIPERWFPG 239 (286)
T ss_pred HheeechhhhCCccchhhHHHHHHHHHHhhccHhhhheeeecCCccceehhhhHHHHHHHHHHHHHHHhhcCCCcccCCC
Confidence 00 0133456788999999999999999999999
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy15881 204 KVDYIGSSHQWWHFFVVLALYYWHNTGIKYIEYRMNHGCT 243 (248)
Q Consensus 204 ~fD~~g~SHqifHv~Vv~a~~~~h~~~l~~~~~~~~~~C~ 243 (248)
|||++||||||||++|++|++.++.+.+.+.++|....|+
T Consensus 240 kfD~~G~SHQifHv~vv~~a~~~~~a~~~~~~~~~~~~~~ 279 (286)
T KOG0748|consen 240 KFDIWGHSHQIFHVLVVLAALFHLEAVLLDYEWRHSHLCG 279 (286)
T ss_pred ccceeCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999998889999999999987443
No 2
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.2e-42 Score=300.60 Aligned_cols=148 Identities=42% Similarity=0.632 Sum_probs=126.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchhHHHHHHHHHHHHHHHHHHhhhccCCCCcH-HHHHhchhcc
Q psy15881 79 FWMTNETINIWSHIFGWMLFLALTLYDLFLLNFEA-SVFDKFIVGLLLGCFQICMVTSTLYHVFSCKSE-RHFHNFLTFD 156 (248)
Q Consensus 79 f~~hNEt~NiwTHllg~i~~l~~~~~~~~~~~~~~-~~~d~~~~~if~~~~~~~l~~StlyH~~~~~S~-~~~~~~~~lD 156 (248)
|++||||+|+|||++|+++++.+..+......... +..|..++.+|++|+++|+++|++||+++|||+ +++++|+++|
T Consensus 1 F~~hNEt~NiwtHll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD 80 (222)
T PF03006_consen 1 FQLHNETVNIWTHLLGAILFLALLIFLLSLASSPSFSPWDYIPFLIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLD 80 (222)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcc
Confidence 78999999999999999999877666544433333 567999999999999999999999999999998 8999999999
Q ss_pred hhhHHHHHHHHHH-------------------------H--------------------------HH-------------
Q psy15881 157 LFGIALSLLGYTT-------------------------C--------------------------SR------------- 172 (248)
Q Consensus 157 ~~gI~l~I~GsYt-------------------------~--------------------------~~------------- 172 (248)
|+||+++|+|+|+ + ++
T Consensus 81 ~~gI~l~i~gs~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~~~ 160 (222)
T PF03006_consen 81 YAGIFLLIAGSYTPFIYYGFYCHPWLGWFYLAFIWILALIGIVLSLFPCFSSPRFRWLRTIFFLLLGWSGIIPIFHRIFF 160 (222)
T ss_pred hhhhhHhHhhhhhhHHHhhccccchHHHHHHHHHHHHHHHhHHhhcchhhcCCccceeeehHhHHHHHHHHhhhHHHHHH
Confidence 9999999999861 0 00
Q ss_pred ---HH----HHHHHHHHHHHhhhhheeeecCCCccCCCcccccCchhHHHHHHHHHHHHHHH
Q psy15881 173 ---ML----LPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVVLALYYWH 227 (248)
Q Consensus 173 ---~~----lp~~~~~~~~~~~G~~~Y~~r~PEr~~PG~fD~~g~SHqifHv~Vv~a~~~~h 227 (248)
.. ++.+..++++|++|++||++|+||||+||+||++|+||||||++|++|++ +|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD~~g~sHqi~Hi~v~~~~~-~h 221 (222)
T PF03006_consen 161 LGGWGSPDPLWLLILGGVLYLLGAVFYATRIPERWFPGKFDIWGHSHQIWHIFVVLAAL-CH 221 (222)
T ss_pred hccccchHHHHHHHHHHHHHHHhHHHhhhccccccCCCCcCCCCccHHHHHHHHHHHHH-HH
Confidence 00 23345677899999999999999999999999999999999999999998 45
No 3
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=240.21 Aligned_cols=159 Identities=23% Similarity=0.270 Sum_probs=135.5
Q ss_pred cccCCccccccCCCCCHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q psy15881 55 LQFNPYILSGYRGYLSTKMCIESIFWMTNETINIWSHIFGWMLFLALTLYDLFLLNFEASVFDKFIVGLLLGCFQICMVT 134 (248)
Q Consensus 55 ~~~N~yI~tGYR~~~s~~~cl~Slf~~hNEt~NiwTHllg~i~~l~~~~~~~~~~~~~~~~~d~~~~~if~~~~~~~l~~ 134 (248)
++||+++.+|||+. .++++||++|+|||++|++++++++..+........++.+..++.+|++++++|+++
T Consensus 1 ~~d~~~~~~~~~~~---------~~~~~~e~~n~~tHlvGail~i~~l~~l~~~a~~~~~~~~~~~~~iy~~sl~~l~~~ 71 (226)
T COG1272 1 QRDNNYIAEGKRSK---------SYSWHEEIANAITHLIGAILAIVGLVLLLVYALITGSALAVIVFSIYGLSLFLLFLV 71 (226)
T ss_pred CCCchhhhcccccc---------cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHhhhhhHHHHHHHHHHHH
Confidence 46899999999977 788999999999999999999988776655444456788999999999999999999
Q ss_pred HhhhccCCCCcHHHHHhchhcchhhHHHHHHHHHH-----------------------HHHH------------------
Q psy15881 135 STLYHVFSCKSERHFHNFLTFDLFGIALSLLGYTT-----------------------CSRM------------------ 173 (248)
Q Consensus 135 StlyH~~~~~S~~~~~~~~~lD~~gI~l~I~GsYt-----------------------~~~~------------------ 173 (248)
|++||.++.+ .+.+.+++|+||+||+++|+|||| +++.
T Consensus 72 St~YH~~~~~-~~~k~~~rk~DH~~I~vLIAgSyTP~~l~~l~~~~~~~~~~iiW~lal~Gi~~kl~~~~~~r~ls~~~y 150 (226)
T COG1272 72 STLYHSIPNG-QKAKAILRKFDHSGIYVLIAGSYTPFLLVGLYGPLGWILLGLIWGLALAGILFKLFFKKRFRKLSLVLY 150 (226)
T ss_pred HHHHHcCCCc-hHHHHHHHHccHHHHHHHHHHhhHHHhHHHhccchHHHHHHHHHHHHHHHHhhhhhccCcCceeeehhh
Confidence 9999999986 799999999999999999999993 0000
Q ss_pred ---------------------HHHHHHHHHHHHhhhhheeeecCCCccCCCcccccCchhHHHHHHHHHHHHHHHHHHHH
Q psy15881 174 ---------------------LLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVVLALYYWHNTGIK 232 (248)
Q Consensus 174 ---------------------~lp~~~~~~~~~~~G~~~Y~~r~PEr~~PG~fD~~g~SHqifHv~Vv~a~~~~h~~~l~ 232 (248)
.+..+..++++|++|++||+.|+ |.++++|||||+||+.|+. +|+.++.
T Consensus 151 l~mGw~~v~~~~~l~~~l~~~~~~~l~~GGv~YsvG~ifY~~~~---------~~~~~~H~iwH~fVv~ga~-~Hf~ai~ 220 (226)
T COG1272 151 LAMGWLGLIVIKPLIAKLGLIGLVLLALGGVLYSVGAIFYVLRI---------DRIPYSHAIWHLFVVGGAA-CHFIAIL 220 (226)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHhHHheeeeEEEEEee---------ccCCchHHHHHHHHHHHHH-HHHHHHH
Confidence 01234567889999999999998 5677899999999999998 6887776
Q ss_pred H
Q psy15881 233 Y 233 (248)
Q Consensus 233 ~ 233 (248)
.
T Consensus 221 ~ 221 (226)
T COG1272 221 F 221 (226)
T ss_pred H
Confidence 4
No 4
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=99.98 E-value=5.1e-32 Score=234.18 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=114.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHhchhcchhhHHH
Q psy15881 83 NETINIWSHIFGWMLFLALTLYDLFLLNFEASVFDKFIVGLLLGCFQICMVTSTLYHVFSCKSERHFHNFLTFDLFGIAL 162 (248)
Q Consensus 83 NEt~NiwTHllg~i~~l~~~~~~~~~~~~~~~~~d~~~~~if~~~~~~~l~~StlyH~~~~~S~~~~~~~~~lD~~gI~l 162 (248)
||++|+|||++|+++++.+...+......+.+..|..++.+|++|+++|+++||+||+++ ||++++++++|+||+||++
T Consensus 1 ~e~~N~~tH~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~vy~~~~~~~~~~St~yH~~~-~s~~~~~~~~rlD~~gI~~ 79 (204)
T TIGR01065 1 EEIANAITHGIGAVLSIIALALLVIYSWDHGGAVAVLGFSIYGISLILLFLVSTLYHSIP-KGSKAKNWLRKIDHSMIYV 79 (204)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHCCc-CchhHHHHHHHccHHHHHH
Confidence 899999999999999988766554433334467799999999999999999999999999 8899999999999999999
Q ss_pred HHHHHHH-----------------------HH---------------H------H------------------HHHHHHH
Q psy15881 163 SLLGYTT-----------------------CS---------------R------M------------------LLPRVMG 180 (248)
Q Consensus 163 ~I~GsYt-----------------------~~---------------~------~------------------~lp~~~~ 180 (248)
+|+|||| +. + + .++.+..
T Consensus 80 lIaGsytP~~~~~~~~~~~~~~~~~iw~la~~gi~~~~~~~~~~r~~r~~~y~~~G~~~v~~~~~~~~~~~~~~~~~l~~ 159 (204)
T TIGR01065 80 LIAGTYTPFLLLALPGPLGWTVLWIIWGLAIGGIIYKLFFHKRPRWLSLFLYLIMGWLVVLVIKPLYHNLPGAGFSLLAA 159 (204)
T ss_pred HHHHhhHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999982 00 0 0 0122356
Q ss_pred HHHHHhhhhheeeecCCCccCCCcccccCchhHHHHHHHHHHHHHHHHHHHH
Q psy15881 181 MYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVVLALYYWHNTGIK 232 (248)
Q Consensus 181 ~~~~~~~G~~~Y~~r~PEr~~PG~fD~~g~SHqifHv~Vv~a~~~~h~~~l~ 232 (248)
++++|++|++||+.|+|||+.| |||||++|++|+. +|+.++.
T Consensus 160 gg~~Y~~G~~fY~~~~p~~~~~---------H~iwH~fV~~g~~-~h~~~i~ 201 (204)
T TIGR01065 160 GGLLYTVGAIFYALKWPIPFTY---------HAIWHLFVLGASA-CHFVAIL 201 (204)
T ss_pred HhHHHHcchHheeecCCCCCCc---------ChHHHHHHHHHHH-HHHHHHH
Confidence 7789999999999999999755 9999999999998 5665554
No 5
>PRK15087 hemolysin; Provisional
Probab=99.96 E-value=5.9e-29 Score=217.39 Aligned_cols=140 Identities=23% Similarity=0.262 Sum_probs=110.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-cccccchhHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHhchhcch
Q psy15881 79 FWMTNETINIWSHIFGWMLFLALTLYDLFLL-NFEASVFDKFIVGLLLGCFQICMVTSTLYHVFSCKSERHFHNFLTFDL 157 (248)
Q Consensus 79 f~~hNEt~NiwTHllg~i~~l~~~~~~~~~~-~~~~~~~d~~~~~if~~~~~~~l~~StlyH~~~~~S~~~~~~~~~lD~ 157 (248)
++++||++|+|||++|+++++.+...+.... ....+..+..++.+|++|+++|+++||+||+++ +++.+++++|+||
T Consensus 11 ~~~~eE~~N~~tH~ig~~~a~~~~~~l~~~~~~~~~~~~~~~~~~vy~~s~~~l~~~StlYH~~~--~~~~~~~~~rlDh 88 (219)
T PRK15087 11 YSLAEEIANSISHGIGLVFGIVGLVLLLVQAVDANADATAITSYSLYGGSMILLFLASTLYHAIP--HQRAKRWLKKFDH 88 (219)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--chHHHHHHHHccH
Confidence 4578999999999999999877665554433 222355688889999999999999999999999 4688999999999
Q ss_pred hhHHHHHHHHHH-----------------------HHHH-------------------------HH--------------
Q psy15881 158 FGIALSLLGYTT-----------------------CSRM-------------------------LL-------------- 175 (248)
Q Consensus 158 ~gI~l~I~GsYt-----------------------~~~~-------------------------~l-------------- 175 (248)
+||+++|+|||| +++. ++
T Consensus 89 ~~I~llIaGsytP~~~~~~~~~~~~~l~~~iW~~a~~Gi~~~~~~~~~~r~l~~~~Yl~mGw~~v~~~~~l~~~~~~~~l 168 (219)
T PRK15087 89 CAIYLLIAGTYTPFLLVGLDSPLARGLMIVIWSLALLGILFKLAFAHRFKVLSLVTYLAMGWLSLIVIYQLAIKLAIGGV 168 (219)
T ss_pred HHHHHHHHHhhHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999999983 0000 00
Q ss_pred HHHHHHHHHHhhhhheeeec-CCCccCCCcccccCchhHHHHHHHHHHHHHHHHHHHHH
Q psy15881 176 PRVMGMYGISGLAFLIYITR-FPECFFTGKVDYIGSSHQWWHFFVVLALYYWHNTGIKY 233 (248)
Q Consensus 176 p~~~~~~~~~~~G~~~Y~~r-~PEr~~PG~fD~~g~SHqifHv~Vv~a~~~~h~~~l~~ 233 (248)
..+.+++++|++|++||+.| +|| ||||||+||++|+. +|+.++..
T Consensus 169 ~~l~~GG~~Y~~G~~fY~~~~~p~------------~H~IwH~fVl~ga~-~H~~ai~~ 214 (219)
T PRK15087 169 TLLAVGGVVYSLGVIFYVCKRIPY------------NHAIWHGFVLGGSV-CHFLAIYL 214 (219)
T ss_pred HHHHHHhHHHHhhHHHHccCCCCC------------chhHHHHHHHHHHH-HHHHHHHH
Confidence 12346778999999999995 775 89999999999998 67666653
No 6
>KOG4243|consensus
Probab=99.26 E-value=1.5e-11 Score=107.04 Aligned_cols=84 Identities=13% Similarity=0.019 Sum_probs=66.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHhhhccCCC---C---cHHHHHhchhc
Q psy15881 82 TNETINIWSHIFGWMLFLALTLYDLFLLNFEASVFDKFIVGLLLGCFQICMVTSTLYHVFSC---K---SERHFHNFLTF 155 (248)
Q Consensus 82 hNEt~NiwTHllg~i~~l~~~~~~~~~~~~~~~~~d~~~~~if~~~~~~~l~~StlyH~~~~---~---S~~~~~~~~~l 155 (248)
++...|.+||.++.+=.+.+..++... ..+-++.+...+|+++.+.+|.+||.||+.+. | -...+..+.++
T Consensus 84 ~EhvAN~~tHai~I~PaIl~~~~l~~~---s~~d~q~i~awIYG~~lc~LFt~STvfH~~~~~~~hqn~~r~l~~~lH~c 160 (298)
T KOG4243|consen 84 YEHVANCYTHAIWIVPAILGSALLHRL---SDDDWQKITAWIYGMGLCALFTVSTVFHIVSWKKSHQNKLRTLEHCLHMC 160 (298)
T ss_pred HHHHHhhHhhHhhhhHHHHHHHHHHHh---hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999887766655544332 23456788889999999999999999999763 2 12456788899
Q ss_pred chhhHHHHHHHHH
Q psy15881 156 DLFGIALSLLGYT 168 (248)
Q Consensus 156 D~~gI~l~I~GsY 168 (248)
|-+.|++.|++||
T Consensus 161 DRa~IY~FIAaSY 173 (298)
T KOG4243|consen 161 DRAVIYFFIAASY 173 (298)
T ss_pred hhhHhhhhhhhcc
Confidence 9999999999999
No 7
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=94.59 E-value=1.2 Score=39.70 Aligned_cols=68 Identities=15% Similarity=0.024 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHhchhcchhhHHH
Q psy15881 83 NETINIWSHIFGWMLFLALTLYDLFLLNFEASVFDKFIVGLLLGCFQICMVTSTLYHVFSCKSERHFHNFLTFDLFGIAL 162 (248)
Q Consensus 83 NEt~NiwTHllg~i~~l~~~~~~~~~~~~~~~~~d~~~~~if~~~~~~~l~~StlyH~~~~~S~~~~~~~~~lD~~gI~l 162 (248)
-|..|..|.+.-.++.+.+..... . . .. +.. +.+..++.++--+.|++||+... ...+.+|-..|..
T Consensus 25 AEf~NtlSNl~fi~~al~gl~~~~-~---~-~~-~~~-~~l~~~~l~~VGiGS~~FHaTl~------~~~ql~DelPMl~ 91 (262)
T PF05875_consen 25 AEFWNTLSNLAFIVAALYGLYLAR-R---R-GL-ERR-FALLYLGLALVGIGSFLFHATLS------YWTQLLDELPMLW 91 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHh-h---c-cc-cch-hHHHHHHHHHHHHhHHHHHhChh------hhHHHhhhhhHHH
Confidence 488899999775555544332211 1 1 11 111 12333333344478999998652 3455678655554
Q ss_pred H
Q psy15881 163 S 163 (248)
Q Consensus 163 ~ 163 (248)
.
T Consensus 92 ~ 92 (262)
T PF05875_consen 92 A 92 (262)
T ss_pred H
Confidence 3
No 8
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=90.31 E-value=5.9 Score=39.68 Aligned_cols=36 Identities=28% Similarity=0.653 Sum_probs=24.3
Q ss_pred CccCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15881 198 ECFFTGKVDYIGSSHQWWHFFVVLALYYWHNTGIKYIEYRM 238 (248)
Q Consensus 198 Er~~PG~fD~~g~SHqifHv~Vv~a~~~~h~~~l~~~~~~~ 238 (248)
|+..||-|| +|++||.+-.+|.++ -+..+..++.++
T Consensus 524 ~Cil~~f~D----~HDiwH~~SA~alff-sf~~l~~lDddL 559 (570)
T PF13965_consen 524 ECILLGFFD----WHDIWHFLSAIALFF-SFLVLLTLDDDL 559 (570)
T ss_pred CCcCcCccc----cHHHHHHHHHHHHHH-HHHHHHHhcccc
Confidence 445567666 899999999988873 444455554443
No 9
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=88.24 E-value=5.4 Score=36.19 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=41.2
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHhchh
Q psy15881 75 IESIFWMTNETINIWSHIFGWMLFLALTLYDLFLLNFEASVFDKFIVGLLLGCFQICMVTSTLYHVFSCKSERHFHNFLT 154 (248)
Q Consensus 75 l~Slf~~hNEt~NiwTHllg~i~~l~~~~~~~~~~~~~~~~~d~~~~~if~~~~~~~l~~StlyH~~~~~S~~~~~~~~~ 154 (248)
+-.+|++ +|.+.|..|..-+.- ..+...+.... ..++.+..+..-+.|+++|+-.. .+--+
T Consensus 56 ~Sv~FSl----lNl~~h~~~~~~~~~-------~~~~~~p~~~~--~~~~~~v~~naW~wStvFH~RD~------~~TE~ 116 (267)
T PF04080_consen 56 ASVLFSL----LNLLAHYRGLRKFRR-------QVPRNSPMYPY--YIIYAIVSMNAWIWSTVFHTRDT------PLTEK 116 (267)
T ss_pred HHHHHHH----HhHHHHHHHHHHHHH-------hccCCCCCcCe--eehHHHHHHHHHHHHHHHHHhcc------cHhhH
Confidence 3344554 578888887654421 11111111111 23445455566789999999653 24448
Q ss_pred cchhhHHHHHHH
Q psy15881 155 FDLFGIALSLLG 166 (248)
Q Consensus 155 lD~~gI~l~I~G 166 (248)
+||.+=...+..
T Consensus 117 lDYf~A~a~vl~ 128 (267)
T PF04080_consen 117 LDYFSAGATVLF 128 (267)
T ss_pred hHHhhhHHHHHH
Confidence 999887666554
No 10
>KOG2970|consensus
Probab=80.06 E-value=14 Score=34.16 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCcHHHHHhchhcchhhHHHHHH
Q psy15881 122 GLLLGCFQICMVTSTLYHVFSCKSERHFHNFLTFDLFGIALSLL 165 (248)
Q Consensus 122 ~if~~~~~~~l~~StlyH~~~~~S~~~~~~~~~lD~~gI~l~I~ 165 (248)
.+|....+...+.|+++|...+. +-.++||++-++.+.
T Consensus 142 ~I~a~i~mnawiwSsvFH~rD~~------lTEklDYf~A~~~vl 179 (319)
T KOG2970|consen 142 LIYAYIGMNAWIWSSVFHIRDVP------LTEKLDYFSAYLTVL 179 (319)
T ss_pred hhHHHHHHHHHHHHHhhhhcCCc------hHhhhhHHHHHHHHH
Confidence 34444444567889999998753 556899988776553
No 11
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=64.18 E-value=48 Score=26.21 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15881 88 IWSHIFGWMLFLALTLY 104 (248)
Q Consensus 88 iwTHllg~i~~l~~~~~ 104 (248)
.|+|++|+++.++++..
T Consensus 17 ~k~y~iGFvLsIiLT~i 33 (111)
T COG3125 17 LKSYLIGFVLSIILTLI 33 (111)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999987643
No 12
>PF14145 YrhK: YrhK-like protein
Probab=48.75 E-value=89 Score=21.66 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q psy15881 84 ETINIWSHIFGWMLFLALTLYDLFLLNFEASVFDKFIVGLLLGCFQICMVT 134 (248)
Q Consensus 84 Et~NiwTHllg~i~~l~~~~~~~~~~~~~~~~~d~~~~~if~~~~~~~l~~ 134 (248)
|.+|.-.-++++++|+++.+..... .....+...|.+|.+.+++-
T Consensus 5 e~~~~~~d~~~~~~FliGSilfl~~------~~~~~g~wlFiiGS~~f~i~ 49 (59)
T PF14145_consen 5 EIISTVNDFIGGLLFLIGSILFLPE------SLYTAGTWLFIIGSILFLIR 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCc------hhHHHHHHHHHHHHHHHHHH
Confidence 6778888889999998876544211 23356667777777544433
No 13
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=40.82 E-value=1.3e+02 Score=22.71 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=20.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q psy15881 80 WMTNETINIWSHIFGWMLFLALTLY 104 (248)
Q Consensus 80 ~~hNEt~NiwTHllg~i~~l~~~~~ 104 (248)
.-|....|...|++|..+.++....
T Consensus 13 ~~H~~~~n~~lH~igvp~~~~~~~~ 37 (95)
T PF06127_consen 13 SYHRNPINRALHFIGVPLIIFSLLL 37 (95)
T ss_pred HHcCCHhhHHHHHHHHHHHHHHHHH
Confidence 4699999999999998887765443
No 14
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=39.25 E-value=2.4e+02 Score=23.93 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=13.3
Q ss_pred hhhheeeecCCCccCCCccc
Q psy15881 187 LAFLIYITRFPECFFTGKVD 206 (248)
Q Consensus 187 ~G~~~Y~~r~PEr~~PG~fD 206 (248)
+..-.|..+-++++.|.+.-
T Consensus 131 ~~~w~~r~~~~~~~~~~~~~ 150 (186)
T PF12036_consen 131 LVSWLYRCRRRRRCYPPSWR 150 (186)
T ss_pred HHHHheecccCCccCChHHH
Confidence 33456766667788888653
No 15
>PHA02965 hypothetical protein; Provisional
Probab=36.15 E-value=21 Score=33.72 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=19.7
Q ss_pred CCCCCCccccccccCCcccccCCcc
Q psy15881 37 SASPSAITLLSYHEAPTHLQFNPYI 61 (248)
Q Consensus 37 ~~~~~~~~ll~~~elP~~~~~N~yI 61 (248)
+..+.....-+++|+|--+.||||.
T Consensus 31 ~~tanttntasfnelp~~fsd~pyy 55 (466)
T PHA02965 31 EDTANTTNTASFNELPFNFSDNPYY 55 (466)
T ss_pred cccccccccccccccceecCCCcce
Confidence 3344556677899999999999985
No 16
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=36.14 E-value=15 Score=26.69 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.9
Q ss_pred ccccccccCCcccccC
Q psy15881 43 ITLLSYHEAPTHLQFN 58 (248)
Q Consensus 43 ~~ll~~~elP~~~~~N 58 (248)
.||+.-+|||+|++.+
T Consensus 18 ~RLm~e~ELPe~~~~d 33 (74)
T PF14619_consen 18 SRLMEESELPEWYRED 33 (74)
T ss_pred ccccchhhchHHHHhc
Confidence 5999999999998753
No 17
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=24.14 E-value=48 Score=19.19 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=8.4
Q ss_pred hheeeecCCCcc
Q psy15881 189 FLIYITRFPECF 200 (248)
Q Consensus 189 ~~~Y~~r~PEr~ 200 (248)
-.+|+.=.||||
T Consensus 14 YL~~aLl~PErF 25 (25)
T PF09604_consen 14 YLFYALLRPERF 25 (25)
T ss_pred HHHHHHhCcccC
Confidence 345666789986
No 18
>KOG3614|consensus
Probab=23.60 E-value=4e+02 Score=29.78 Aligned_cols=81 Identities=17% Similarity=0.294 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHHHHHHHhhhccCCCC-cHH----HHHhchhcchh
Q psy15881 85 TINIWSHIFGWMLFLALTLYDLFL-LNFEASVFDKFIVGLLLGCFQICMVTSTLYHVFSCK-SER----HFHNFLTFDLF 158 (248)
Q Consensus 85 t~NiwTHllg~i~~l~~~~~~~~~-~~~~~~~~d~~~~~if~~~~~~~l~~StlyH~~~~~-S~~----~~~~~~~lD~~ 158 (248)
.+=.|.-.+..+.|+.++.|.+.. .....++.+.+ +..|.... +|--.=-++=.-.++ ..+ ....|..+|-.
T Consensus 792 IvkFw~~~l~yi~FL~lftYvlLv~~~~~Ps~~Ew~-~~~~iftl-~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ 869 (1381)
T KOG3614|consen 792 IVKFWLNVLSYIAFLLLFTYVLLVDFQPSPSMWEWI-LFAWIFTL-FLEEVRQIFISESGLLPQKVRVYFADFWNLIDLL 869 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHheeccCCCCCccchh-HHHHHHHH-HHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHH
Confidence 345677777777777765554321 11112333332 22333222 121111111111111 222 35688999999
Q ss_pred hHHHHHHHH
Q psy15881 159 GIALSLLGY 167 (248)
Q Consensus 159 gI~l~I~Gs 167 (248)
+|.++++|.
T Consensus 870 ai~~F~vG~ 878 (1381)
T KOG3614|consen 870 AILLFLVGP 878 (1381)
T ss_pred HHHHHhhhh
Confidence 999999984
No 19
>KOG3150|consensus
Probab=20.45 E-value=1.1e+02 Score=25.77 Aligned_cols=48 Identities=17% Similarity=0.076 Sum_probs=29.8
Q ss_pred CCCcHHHHHhchhcch----------hhHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhh
Q psy15881 142 SCKSERHFHNFLTFDL----------FGIALSLLGYT----TCSRMLLPRVMGMYGISGLAFL 190 (248)
Q Consensus 142 ~~~S~~~~~~~~~lD~----------~gI~l~I~GsY----t~~~~~lp~~~~~~~~~~~G~~ 190 (248)
+|||. +...+.++-| .++++++-|.| .++...+|.++..+++.+.+.+
T Consensus 117 NCHSh-VA~aLn~mry~~s~~WNmvnla~~~l~kGk~V~~~~~vks~LPfv~~lgI~l~~w~f 178 (182)
T KOG3150|consen 117 NCHSH-VANALNRMRYGGSTEWNMVNLAILLLIKGKWVNGTAFVKSWLPFVILLGIFLVGWPF 178 (182)
T ss_pred cHHHH-HHHHHHHhhcCCCCCchHHHHHHHHHhhceeeccchHHHHHhhHHHHHHHHHHHHHH
Confidence 36874 4555555555 35666777766 3778889976666655554443
Done!