Query psy15881
Match_columns 248
No_of_seqs 179 out of 1388
Neff 6.5
Searched_HMMs 29240
Date Sat Aug 17 00:01:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jmf_B Neurogenic locus notch 20.4 58 0.002 17.7 1.7 16 63-78 8-23 (26)
2 3pcv_A Leukotriene C4 synthase 9.7 6.3E+02 0.022 19.6 7.4 19 87-105 76-94 (156)
3 4f92_B U5 small nuclear ribonu 8.7 1.4E+02 0.0048 32.5 2.2 36 42-80 57-93 (1724)
4 1p4q_A CBP/P300-interacting tr 8.7 1.3E+02 0.0044 19.4 1.2 16 45-60 30-46 (52)
5 2ckc_A Chromodomain-helicase-D 7.0 24 0.00081 25.1 -3.2 12 49-60 47-58 (80)
6 2wq4_A Lectin; LUNG, pathogen, 6.7 1E+02 0.0036 23.6 0.0 13 187-199 71-83 (156)
7 1hbx_G ETS-domain protein ELK- 5.2 1.6E+02 0.0056 23.5 0.3 9 57-65 139-147 (157)
8 3arc_J Photosystem II reaction 4.6 3.4E+02 0.011 16.6 1.4 14 181-194 19-32 (40)
9 1r8u_A CBP/P300-interacting tr 4.5 2.3E+02 0.0079 18.0 0.7 16 45-60 18-34 (50)
10 3kyz_A Sensor protein PFES; AP 4.2 2.8E+02 0.0094 21.2 1.0 7 196-202 118-124 (125)
No 1
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=20.45 E-value=58 Score=17.74 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=12.7
Q ss_pred cccCCCCCHHHHHHHH
Q psy15881 63 SGYRGYLSTKMCIESI 78 (248)
Q Consensus 63 tGYR~~~s~~~cl~Sl 78 (248)
||-+.+.||.+|+|..
T Consensus 8 tgakqppsyedcik~~ 23 (26)
T 2jmf_B 8 TGAKQPPSYEDCIKXX 23 (26)
T ss_pred CCCCCCCCHHHHHHhh
Confidence 6777778999999864
No 2
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A* 3leo_A*
Probab=9.72 E-value=6.3e+02 Score=19.56 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15881 87 NIWSHIFGWMLFLALTLYD 105 (248)
Q Consensus 87 NiwTHllg~i~~l~~~~~~ 105 (248)
+.|+|++|.++.+....+.
T Consensus 76 ~~~a~~lg~~~~~gRily~ 94 (156)
T 3pcv_A 76 EGAAALCGLVYLFARLRYF 94 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577888777776655544
No 3
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=8.71 E-value=1.4e+02 Score=32.48 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=25.8
Q ss_pred CccccccccCCcccccCCccccccCCCCCH-HHHHHHHhh
Q psy15881 42 AITLLSYHEAPTHLQFNPYILSGYRGYLST-KMCIESIFW 80 (248)
Q Consensus 42 ~~~ll~~~elP~~~~~N~yI~tGYR~~~s~-~~cl~Slf~ 80 (248)
..+++.+.+||+|.| +.| .||...+.. ..|+..++.
T Consensus 57 ~~~l~~i~~Lp~~~~-~~f--~g~~~ln~iQs~~~~~al~ 93 (1724)
T 4f92_B 57 EEQLLPVEKLPKYAQ-AGF--EGFKTLNRIQSKLYRAALE 93 (1724)
T ss_dssp SCCCCBTTTSCGGGS-TTC--TTCSBCCHHHHHTHHHHHT
T ss_pred cCCccchHhcCHHHH-Hhc--CCCCCCCHHHHHHHHHHHc
Confidence 356788899999987 444 688876665 357777664
No 4
>1p4q_A CBP/P300-interacting transactivator 2; helix, protein-protein complex, transcription/transferase complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=8.70 E-value=1.3e+02 Score=19.39 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=10.4
Q ss_pred ccccccCCcc-cccCCc
Q psy15881 45 LLSYHEAPTH-LQFNPY 60 (248)
Q Consensus 45 ll~~~elP~~-~~~N~y 60 (248)
|=+..|+|+- +-+|++
T Consensus 30 LdRv~ELPEL~LgqnEf 46 (52)
T 1p4q_A 30 LDRIKELPELWLGQNEF 46 (52)
T ss_dssp SSSCSSCCCCCSCCSTT
T ss_pred hHHHHHhHHHHhCcchh
Confidence 4467899985 445765
No 5
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=6.99 E-value=24 Score=25.14 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=9.2
Q ss_pred ccCCcccccCCc
Q psy15881 49 HEAPTHLQFNPY 60 (248)
Q Consensus 49 ~elP~~~~~N~y 60 (248)
.+|++|+++||=
T Consensus 47 KdL~dWLrqhP~ 58 (80)
T 2ckc_A 47 KDLVEWLKLHPT 58 (80)
T ss_dssp HHHHHHHHHCTT
T ss_pred cCHHHHHHHCCC
Confidence 578889998863
No 6
>2wq4_A Lectin; LUNG, pathogen, infection, sugar binding protein; HET: SFU; 1.42A {Burkholderia cenocepacia}
Probab=6.68 E-value=1e+02 Score=23.62 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=10.9
Q ss_pred hhhheeeecCCCc
Q psy15881 187 LAFLIYITRFPEC 199 (248)
Q Consensus 187 ~G~~~Y~~r~PEr 199 (248)
-|.+-|.+|+||.
T Consensus 71 ~g~ftysskipe~ 83 (156)
T 2wq4_A 71 DGCFTYSSKVPES 83 (156)
T ss_dssp EEEEECSSSSCSS
T ss_pred ecceeecccCCcc
Confidence 4778999999995
No 7
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=5.21 E-value=1.6e+02 Score=23.47 Aligned_cols=9 Identities=56% Similarity=0.689 Sum_probs=7.7
Q ss_pred cCCcccccc
Q psy15881 57 FNPYILSGY 65 (248)
Q Consensus 57 ~N~yI~tGY 65 (248)
+|+||++|-
T Consensus 139 rn~y~~sgl 147 (157)
T 1hbx_G 139 RNDYIHSGL 147 (157)
T ss_dssp GGGGGGSSS
T ss_pred hhhhHhccc
Confidence 599999984
No 8
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=4.60 E-value=3.4e+02 Score=16.61 Aligned_cols=14 Identities=21% Similarity=0.161 Sum_probs=9.4
Q ss_pred HHHHHhhhhheeee
Q psy15881 181 MYGISGLAFLIYIT 194 (248)
Q Consensus 181 ~~~~~~~G~~~Y~~ 194 (248)
..++..+|.+||.+
T Consensus 19 ~~vi~~~giFfyGs 32 (40)
T 3arc_J 19 MGVIVIVGLFFYGA 32 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhheeeEEEeec
Confidence 34566678888864
No 9
>1r8u_A CBP/P300-interacting transactivator 2; zinc-binding motifs, protein-protein complex, TAZ zinc finger, transcription/transcription activator complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=4.54 E-value=2.3e+02 Score=18.03 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=9.7
Q ss_pred ccccccCCcc-cccCCc
Q psy15881 45 LLSYHEAPTH-LQFNPY 60 (248)
Q Consensus 45 ll~~~elP~~-~~~N~y 60 (248)
|=+..|+|+- +-.|++
T Consensus 18 LdRv~ELPEL~LgqnEf 34 (50)
T 1r8u_A 18 LDRIKELPELWLGQNEF 34 (50)
T ss_dssp GGGCCSCCCCCTTSGGG
T ss_pred hHHHHHhHHHHhccchH
Confidence 4456788885 344554
No 10
>3kyz_A Sensor protein PFES; APC37897.4, the sensor domain of two-component sensor PFES, pseudomonas aeruginosa PA01, structural genomics, PSI-2; 1.50A {Pseudomonas aeruginosa}
Probab=4.25 E-value=2.8e+02 Score=21.19 Aligned_cols=7 Identities=29% Similarity=0.719 Sum_probs=2.6
Q ss_pred CCCccCC
Q psy15881 196 FPECFFT 202 (248)
Q Consensus 196 ~PEr~~P 202 (248)
+|+|+.|
T Consensus 118 LP~r~~P 124 (125)
T 3kyz_A 118 LPERLLP 124 (125)
T ss_dssp CCGGGCC
T ss_pred CccccCc
Confidence 3333333
Done!