Query psy15881
Match_columns 248
No_of_seqs 179 out of 1388
Neff 6.5
Searched_HMMs 13730
Date Sat Aug 17 00:01:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15881.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15881hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tdja2 d.58.18.2 (A:336-423) 31.3 8.7 0.00064 26.1 1.4 13 191-205 5-17 (88)
2 d1tdja3 d.58.18.2 (A:424-514) 19.8 15 0.0011 25.1 0.8 14 190-205 11-24 (91)
3 d2v0fa1 d.76.2.1 (A:2629-2715) 12.4 11 0.00081 25.7 -1.5 33 49-85 39-71 (87)
4 d1bu2a2 a.74.1.1 (A:149-250) V 12.4 16 0.0011 24.6 -0.7 15 191-205 12-26 (102)
5 d1ik7a_ a.77.1.2 (A:) Pelle de 10.1 1.7E+02 0.012 17.5 3.7 23 80-102 4-27 (52)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 9.9 64 0.0047 17.6 1.5 15 180-194 12-26 (34)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 9.2 54 0.0039 16.8 0.9 13 181-193 4-16 (27)
8 d1iqpa2 c.37.1.20 (A:2-232) Re 5.9 83 0.006 23.1 1.0 19 196-214 14-33 (231)
9 d2ckca1 d.76.2.1 (A:2563-2622) 5.6 24 0.0018 22.2 -2.1 14 48-61 26-39 (60)
10 d1ncwh1 b.1.1.1 (H:1-113) Immu 5.4 83 0.006 22.1 0.7 12 199-210 100-111 (119)
No 1
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=31.30 E-value=8.7 Score=26.07 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=11.0
Q ss_pred eeeecCCCccCCCcc
Q psy15881 191 IYITRFPECFFTGKV 205 (248)
Q Consensus 191 ~Y~~r~PEr~~PG~f 205 (248)
+|+..+||| ||.|
T Consensus 5 l~~v~iPEr--pGaf 17 (88)
T d1tdja2 5 LLAVTIPEE--KGSF 17 (88)
T ss_dssp EEEEECCBS--SSCS
T ss_pred EEEEEcCCC--ccHH
Confidence 688999995 9975
No 2
>d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.79 E-value=15 Score=25.06 Aligned_cols=14 Identities=36% Similarity=0.743 Sum_probs=10.9
Q ss_pred heeeecCCCccCCCcc
Q psy15881 190 LIYITRFPECFFTGKV 205 (248)
Q Consensus 190 ~~Y~~r~PEr~~PG~f 205 (248)
.+|+..|||| ||.|
T Consensus 11 ~l~~v~iPEr--pGal 24 (91)
T d1tdja3 11 RLYSFEFPES--PGAL 24 (91)
T ss_dssp EEEEEECCCC--TTHH
T ss_pred EEEEEECCCC--ccHH
Confidence 3788999996 8853
No 3
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.40 E-value=11 Score=25.66 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=22.7
Q ss_pred ccCCcccccCCccccccCCCCCHHHHHHHHhhhhhhh
Q psy15881 49 HEAPTHLQFNPYILSGYRGYLSTKMCIESIFWMTNET 85 (248)
Q Consensus 49 ~elP~~~~~N~yI~tGYR~~~s~~~cl~Slf~~hNEt 85 (248)
.+|..|++.|| +|-....+.+|.|+=+++-++-
T Consensus 39 ~~L~~WL~~nP----~y~V~P~w~~~vk~~g~lpe~~ 71 (87)
T d2v0fa1 39 KDLPRWLEENP----EFAVAPDWTDIVKQSGFVPESM 71 (87)
T ss_dssp GGHHHHHHHCT----TEEECHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHHHCC----CceeCccHHHHHhhcCcCcHHH
Confidence 58889999886 4544446778888766655543
No 4
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=12.39 E-value=16 Score=24.58 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=11.5
Q ss_pred eeeecCCCccCCCcc
Q psy15881 191 IYITRFPECFFTGKV 205 (248)
Q Consensus 191 ~Y~~r~PEr~~PG~f 205 (248)
..+.|+||.+||--|
T Consensus 12 c~alkipe~~wpql~ 26 (102)
T d1bu2a2 12 CNALKIPEDLWPQLY 26 (102)
T ss_dssp HHHTTCCTTSHHHHH
T ss_pred hhhccCcHHHhHHHH
Confidence 467899999988433
No 5
>d1ik7a_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=10.05 E-value=1.7e+02 Score=17.48 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=15.6
Q ss_pred hhhhhhHHHHHH-HHHHHHHHHHH
Q psy15881 80 WMTNETINIWSH-IFGWMLFLALT 102 (248)
Q Consensus 80 ~~hNEt~NiwTH-llg~i~~l~~~ 102 (248)
++.||.+|+|-| .=-.+.-++..
T Consensus 4 SPt~elL~~Wg~q~NHTi~eLF~l 27 (52)
T d1ik7a_ 4 SASNEFLNIWGGQYNHTVQTLFAL 27 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCcccccHHHHHHH
Confidence 468999999988 45555544433
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.90 E-value=64 Score=17.62 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=10.3
Q ss_pred HHHHHHhhhhheeee
Q psy15881 180 GMYGISGLAFLIYIT 194 (248)
Q Consensus 180 ~~~~~~~~G~~~Y~~ 194 (248)
+..++..+|.+||.+
T Consensus 12 G~~vi~~vG~FfYGs 26 (34)
T d2axtj1 12 GMGVIVIVGLFFYGA 26 (34)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred hhhhHhheeeeeeee
Confidence 445666778888864
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.23 E-value=54 Score=16.79 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=6.8
Q ss_pred HHHHHhhhhheee
Q psy15881 181 MYGISGLAFLIYI 193 (248)
Q Consensus 181 ~~~~~~~G~~~Y~ 193 (248)
+.++.++|+.||+
T Consensus 4 gli~~tl~glf~a 16 (27)
T d2e74g1 4 GLVFATLGGLFYA 16 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHH
Confidence 3344455666665
No 8
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=5.88 E-value=83 Score=23.14 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=14.3
Q ss_pred CCCccCCCcc-cccCchhHH
Q psy15881 196 FPECFFTGKV-DYIGSSHQW 214 (248)
Q Consensus 196 ~PEr~~PG~f-D~~g~SHqi 214 (248)
+-||+.|..| |++|+.+.+
T Consensus 14 w~~ky~P~~~~diig~~~~~ 33 (231)
T d1iqpa2 14 WVEKYRPQRLDDIVGQEHIV 33 (231)
T ss_dssp HHHHTCCCSTTTCCSCHHHH
T ss_pred HHHHhCCCCHHHccCcHHHH
Confidence 3477889888 899987644
No 9
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.56 E-value=24 Score=22.18 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=10.5
Q ss_pred cccCCcccccCCcc
Q psy15881 48 YHEAPTHLQFNPYI 61 (248)
Q Consensus 48 ~~elP~~~~~N~yI 61 (248)
..+|..|+++||-.
T Consensus 26 ~~~L~~WL~~hP~y 39 (60)
T d2ckca1 26 NKDLVEWLKLHPTY 39 (60)
T ss_dssp HHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHCCCc
Confidence 35888899998743
No 10
>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}
Probab=5.45 E-value=83 Score=22.06 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=0.0
Q ss_pred ccCCCcccccCc
Q psy15881 199 CFFTGKVDYIGS 210 (248)
Q Consensus 199 r~~PG~fD~~g~ 210 (248)
++.+|.||+||+
T Consensus 100 ~~~~~~~d~WGq 111 (119)
T d1ncwh1 100 LWYDGGAGSWGQ 111 (119)
T ss_dssp ETTTSCSCEECC
T ss_pred cccCCCCcccCC
Done!