RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15881
(248 letters)
>gnl|CDD|217315 pfam03006, HlyIII, Haemolysin-III related. Members of this family
are integral membrane proteins. This family includes a
protein with hemolytic activity from Bacillus cereus. It
has been proposed that YOL002c encodes a Saccharomyces
cerevisiae protein that plays a key role in metabolic
pathways that regulate lipid and phosphate metabolism.
In eukaryotes, members are seven-transmembrane pass
molecules found to encode functional receptors with a
broad range of apparent ligand specificities, including
progestin and adipoQ receptors, and hence have been
named PAQR proteins. The mammalian members include
progesterone binding proteins. Unlike the case with GPCR
receptor proteins, the evolutionary ancestry of the
members of this family can be traced back to the
Archaea.
Length = 207
Score = 71.1 bits (175), Expect = 5e-15
Identities = 53/202 (26%), Positives = 73/202 (36%), Gaps = 58/202 (28%)
Query: 79 FWMTNETINIWSHIFGWMLFLALTLYDLFLLNFEASVFDKFIVGLLLGCFQICMVTSTLY 138
F + NET NIW+H+ G +LF+ L ++ L L + S ++ + + ++ STLY
Sbjct: 1 FSLHNETANIWTHLIGAILFIVLLIFLLVLASLGGSPWEVVPFSIYGLSLFLLLLVSTLY 60
Query: 139 HVFSCKSERHFHNFL-TFDLFGIALSLLG-YTTCS------------------------- 171
H+FSC SE L D GI L + G YT
Sbjct: 61 HLFSCHSEGRAKYVLRKLDHSGIYLLIAGSYTPFLLYALCGPLGWILLIFIWGLALLGIL 120
Query: 172 ------------RMLLPRVMGMYGISGLAFLIYITRFPE-------------------CF 200
R +L +MG GI + LI
Sbjct: 121 LKLFWLKRFRWLRTVLYLLMGWLGIIPIKHLILALGGGGLVLLVLGGVLYTLGAIFYALR 180
Query: 201 FTGKVDYIGSSHQWWHFFVVLA 222
F G D G SHQ +H FVVL
Sbjct: 181 FPGPFDIWGHSHQIFHLFVVLG 202
>gnl|CDD|224191 COG1272, COG1272, Predicted membrane protein, hemolysin III homolog
[General function prediction only].
Length = 226
Score = 43.4 bits (103), Expect = 4e-05
Identities = 39/218 (17%), Positives = 61/218 (27%), Gaps = 63/218 (28%)
Query: 58 NPYILSGYRGYLSTKMCIESIFWMTNETINIWSHIFGWMLFLALTLYDLFLLNFEASVFD 117
N YI G R + E N +H+ G +L + + L S
Sbjct: 4 NNYIAEGKRSKSYSW---------HEEIANAITHLIGAILAIVGLVLLLVYALITGSALA 54
Query: 118 KFIVGLLLGCFQICMVTSTLYHVFSCKSERH---------------------------FH 150
+ + + + STLYH ++ +
Sbjct: 55 VIVFSIYGLSLFLLFLVSTLYHSIP-NGQKAKAILRKFDHSGIYVLIAGSYTPFLLVGLY 113
Query: 151 NFLTFDLFGI--ALSLLGYTTCS---------RMLLPRVMGMYGISGLAFLIYITRFPE- 198
L + L G+ L+L G ++L MG G+ + LI
Sbjct: 114 GPLGWILLGLIWGLALAGILFKLFFKKRFRKLSLVLYLAMGWLGLIVIKPLIAKLGLIGL 173
Query: 199 -CFFTG-------------KVDYIGSSHQWWHFFVVLA 222
G ++D I SH WH FVV
Sbjct: 174 VLLALGGVLYSVGAIFYVLRIDRIPYSHAIWHLFVVGG 211
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 33.4 bits (76), Expect = 0.12
Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 11 DKERLSDSDSDEAEAQTRRPGNSKSPSAS-PSAITLLSYHEAPTHLQFNPYILS 63
D SDS+ + EA P P A P T + QF P LS
Sbjct: 3040 DSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEAGARESPSSQFGPPPLS 3093
>gnl|CDD|236635 PRK09928, PRK09928, choline transport protein BetT; Provisional.
Length = 679
Score = 31.2 bits (71), Expect = 0.50
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 76 ESIFWMTNETINIWSHIFGWMLFLALTLYDLFLLNFEASVFDKFIVG 122
S W+ N T+N S FGW LA TLY +F++ S F +G
Sbjct: 40 FSNRWI-NRTLNWVSKTFGWYYLLAATLYIVFVIFIACSRFGSIKLG 85
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 29.4 bits (66), Expect = 1.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 12 KERLSDSDSDEAEAQTRRPGNSKSPSAS 39
K R S S SD+ + R +S S S
Sbjct: 106 KRRRSSSPSDDEDEAERPSKRPRSDSIS 133
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 28.9 bits (64), Expect = 2.4
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 1 MNRSEKSQKHDKERLSDSDSDE---AEAQTRRPGNSK 34
M SE ++ E SD D DE + + R+ ++K
Sbjct: 241 METSESEEEESSESESDEDEDEDNKGKIRKRKTDDAK 277
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 28.4 bits (64), Expect = 3.3
Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 8/124 (6%)
Query: 113 ASVFDKFIVGLLLGCFQICMVTSTLYHVFSCKSERHFHNFLTFDLFGIALSLLGYTTCSR 172
A V K +V L + Q + +Y + R F L L +A S LG +
Sbjct: 95 AYVLAKILVELPISLLQAIIFLLIVYFMVGLPVSRFFLFLLVLLLTALAASGLGLFIAAL 154
Query: 173 MLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVVLALYYWHNTGIK 232
G L L+ +G + S W + L + ++
Sbjct: 155 APSFEDASQIGPLLLLPLL--------LLSGFFIPVDSMPGWLQWIYYLNPLTYAIEALR 206
Query: 233 YIEY 236
E+
Sbjct: 207 ANEF 210
>gnl|CDD|235115 PRK03317, PRK03317, histidinol-phosphate aminotransferase;
Provisional.
Length = 368
Score = 28.3 bits (64), Expect = 3.6
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 7/30 (23%)
Query: 21 DEAEAQTRRPGNSKSPSASPSAITLLSYHE 50
DEA A+ RR G +PSA+TLL +
Sbjct: 196 DEAYAEFRRSG-------TPSALTLLPEYP 218
>gnl|CDD|180323 PRK05951, ubiA, prenyltransferase; Reviewed.
Length = 296
Score = 27.8 bits (62), Expect = 4.7
Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 11/133 (8%)
Query: 97 LFLALTLYDLFLLNFEASVFDKFIVGLLLGCFQICMVTSTLYHVFSCK-SERHFHNFLTF 155
L AL L FLL+ +VF+ + +L C + + + + H
Sbjct: 40 LLGALMLLGYFLLHASLNVFNDYK-DYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIA 98
Query: 156 DLFGIALSLLGYTTCSRMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQW- 214
L IAL L R + + + G+ FL P F K ++G +
Sbjct: 99 -LGAIALQLGWSLVLDRGIGAVTLALLGV----FLWTCYMGPPFFL--KYRWLGEHLVFY 151
Query: 215 -WHFFVVLALYYW 226
W +V+ L Y
Sbjct: 152 AWSHMLVMGLIYV 164
>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport. This family represents 5
transmembrane helices.
Length = 175
Score = 27.6 bits (62), Expect = 4.8
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 30/142 (21%)
Query: 85 TINIWSHIFG---WMLFLALTLYDLFLLNFEASVFDKFIVGLLLGCFQICMVTSTLYHVF 141
+ + I + + L ++ L LL F S +V S L++
Sbjct: 47 SRKLLRRILLQGLLIAIVTLLVFFLGLLGFGISESGLAQ-----TMAFNTLVLSQLFNAL 101
Query: 142 SCKSERHFHNFLTFDLFGIALSLLGYTTCSRMLLPRVMGMYGISGLAFLIYITRFPECFF 201
+ +S R + LF +++LL V+ + +IY+ F
Sbjct: 102 NARSLR--RSLFKIGLFS-----------NKLLLLAVLLS--LLLQLLIIYVPGLQAVFG 146
Query: 202 TGKVDYIGSSHQWWHFFVVLAL 223
T + + +VL L
Sbjct: 147 TTPLS-------LEQWLIVLGL 161
>gnl|CDD|219910 pfam08570, DUF1761, Protein of unknown function (DUF1761). Family
of conserved fungal and bacterial membrane proteins with
unknown function.
Length = 126
Score = 26.8 bits (60), Expect = 5.3
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 96 MLFLALTLYDLFLLNFEASVFDKFIVGLLLGCFQICMVTSTLYHVFSCKSERHF-----H 150
L A L L ++ ++GLL+ + T ++F + + F +
Sbjct: 54 SLLQAYVLAALLAATGIDTLKAGALLGLLIWLGFV-APTLGSNYLFEGRPLKLFLIDAGY 112
Query: 151 NFLTFDLFGIALSL 164
+ F + G+ L L
Sbjct: 113 WLVAFVIMGLVLGL 126
>gnl|CDD|113836 pfam05081, DUF682, Protein of unknown function (DUF682). This
family consists if several uncharacterized baculovirus
proteins.
Length = 152
Score = 26.9 bits (60), Expect = 8.1
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 97 LFLALTLYDLFLLNFEASVFDKFIVGLLLGCFQICMVTSTLYHVFSCKS 145
L AL +Y ++ + S F K I+ C +I VT + +F +S
Sbjct: 78 LLDALLMYKTYVELVDDSAFGKNILNS---CEEI--VTYI-FELFRLQS 120
>gnl|CDD|179508 PRK02944, PRK02944, OxaA-like protein precursor; Validated.
Length = 255
Score = 27.0 bits (60), Expect = 8.5
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 115 VFDKFIVGLLLGCFQICMVTSTL---YHVFSCKSERHFHNFLTFDL 157
+F K V L GC I + L YH SE H+FL FDL
Sbjct: 120 LFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSEISKHSFLWFDL 165
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.140 0.458
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,552,823
Number of extensions: 1186710
Number of successful extensions: 1635
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1628
Number of HSP's successfully gapped: 68
Length of query: 248
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 154
Effective length of database: 6,768,326
Effective search space: 1042322204
Effective search space used: 1042322204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.1 bits)