RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15881
(248 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 3e-04
Identities = 52/281 (18%), Positives = 83/281 (29%), Gaps = 99/281 (35%)
Query: 22 EAEAQTRRPGNSKSPSASPSAITLL---SYHEAPTHLQF------NPYI--LSG-YRGYL 69
A +RP + KS SA L A F + Y L Y+ Y
Sbjct: 128 TARIMAKRPFDKKSNSA------LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY- 180
Query: 70 STKMCIESIFWMTNETIN-----------IWSH---IFGWM---------LFLA------ 100
+ + + + ET++ +++ I W+ +L
Sbjct: 181 --HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 101 -------LTLYDLFL--LNFEASVFDKFIVGLLLGCFQICMVTSTLYHVFSCKSERHFH- 150
L Y + L F ++ G G Q +VT+ + S F
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKG-ATGHSQ-GLVTAVA--IAETDSWESFFV 294
Query: 151 ---NFLTFDLFGIAL-SLLGYTTCSRMLLPRVM--------G----MYGISGL--AFLI- 191
+T LF I + Y S L P ++ G M IS L +
Sbjct: 295 SVRKAITV-LFFIGVRCYEAYPNTS--LPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 192 YITRFPECFFTGKVDYI----GSSHQWWHFFVV----LALY 224
Y+ + GK I G+ + VV +LY
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKN-----LVVSGPPQSLY 387
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G
protein, signaling protein regulation; NMR {Homo
sapiens} SCOP: a.91.1.1
Length = 152
Score = 33.1 bits (75), Expect = 0.036
Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 7/135 (5%)
Query: 30 PGNSKSPSASPSAITLLSYHEAPTHLQFNPYILSGYRGYLSTKMCIESI-FWMTNETINI 88
PG S PS + S+ ++ L +P S +R +L T+ E++ FW+ E +
Sbjct: 2 PGISGGGGGIPSPEEVQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEELK- 60
Query: 89 WSHIFGWMLFLALTLYDLFLLN--FEASVFDKFIVGLLLGCFQ---ICMVTSTLYHVFSC 143
+ A +Y+ ++ + D + + Q +++
Sbjct: 61 AEANQHVVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTL 120
Query: 144 KSERHFHNFLTFDLF 158
+ FL+ +
Sbjct: 121 MHRDSYPRFLSSPTY 135
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 155
Score = 30.4 bits (68), Expect = 0.31
Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 6/130 (4%)
Query: 35 SPSASPSAITLLSYHEAPTHLQFNPYILSGYRGYLSTKMCIESI-FWMTNETIN-IWSHI 92
S +S + S+ + L +P + + +L + E+I FW E N + +H
Sbjct: 2 SSGSSGRERRVASWAVSFERLLQDPVGVRYFSDFLRKEFSEENILFWQACEYFNHVPAHD 61
Query: 93 FGWMLFLALTLYDLFLLN---FEASVFDK-FIVGLLLGCFQICMVTSTLYHVFSCKSERH 148
+ + A ++ FL + ++ + + +L M +F+
Sbjct: 62 KKELSYRAREIFSKFLCSKATTPVNIDSQAQLADDVLRAPHPDMFKEQQLQIFNLMKFDS 121
Query: 149 FHNFLTFDLF 158
+ FL L+
Sbjct: 122 YTRFLKSPLY 131
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 31.1 bits (71), Expect = 0.40
Identities = 14/117 (11%), Positives = 36/117 (30%), Gaps = 12/117 (10%)
Query: 86 INIWSHIFGWMLFLA-LTLYDLFLLNFEASVFDKFIVGLLLGCFQICMVTSTLYHVFSCK 144
+ S + G +L + E + + F + + + + +F +
Sbjct: 755 LWGMSVLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLF-LQISLTENWLIFITR 813
Query: 145 SERHFHN----------FLTFDLFGIALSLLGYTTCSRMLLPRVMGMYGISGLAFLI 191
+ F + D+ ++ G+ S + V+ ++ S F I
Sbjct: 814 ANGPFWSSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCI 870
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 29.9 bits (68), Expect = 0.80
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 128 FQICMVTSTLYHVFSCKSERH--FHNFLT--FDLFGIALSLL 165
F I +V + CK+ R+ F + +FG+
Sbjct: 927 FFISIVVVQWADLIICKTRRNSIFQQGMKNKILIFGLFEETA 968
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type
ATPase, membrane protein, hydrolase, aluminium fluoride,
ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A
Length = 1034
Score = 29.2 bits (66), Expect = 1.7
Identities = 29/212 (13%), Positives = 48/212 (22%), Gaps = 54/212 (25%)
Query: 22 EAEAQTRRPGNSKSPSASPSAITLLSYHEAPTHLQFNPYILSGYRGYLSTKMCIESIFW- 80
E++ RP N K + SY G + + F
Sbjct: 838 ESDIMHLRPRNPKRDRLVNEPLAAYSY---------------FQIGAIQSFAGFTDYFTA 882
Query: 81 MTNETINIWSHIFGWMLFLALTLYDLFLLNFEASVFDKFIVGLLLGC--FQICMVTSTLY 138
M E + + L DL + F + + F I + +
Sbjct: 883 MAQEGWFPLLCVGLRPQWENHHLQDLQDSYGQEWTFGQRLYQQYTCYTVFFISIEMCQIA 942
Query: 139 HVFSCKSERH-------FHNFLTFDLFGIALSLLGYTTCSRMLLPRVMGMYGISGLAFLI 191
V K+ R F N + I + FL
Sbjct: 943 DVLIRKTRRLSAFQQGFFRNRILV--IAIVFQVC--------------------IGCFLC 980
Query: 192 YITRFPECFFTGKVDYIGSSHQWWHFFVVLAL 223
Y P F + + + V +
Sbjct: 981 YCPGMPNIFNFMPIR-------FQWWLVPMPF 1005
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT
structural genomics, JCSG, protein structure initiative,
PS unknown function; HET: UNL; 2.46A {Pseudomonas
aeruginosa} SCOP: b.41.1.4 b.43.3.4
Length = 187
Score = 28.4 bits (64), Expect = 1.7
Identities = 6/44 (13%), Positives = 16/44 (36%)
Query: 177 RVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVV 220
+++ +YGI G + T + + + + +V
Sbjct: 25 KIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELV 68
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 150
Score = 26.5 bits (58), Expect = 5.5
Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 7/132 (5%)
Query: 33 SKSPSASPSAITLLSYHEAPTHLQFNPYILSGYRGYLSTKMCIESI-FWMTNETINIWSH 91
+ + S L + ++ L N Y L+ ++ +L ++ E++ FW+ E
Sbjct: 10 KPAKTQKTSLDEALQWRDSLDKLLQNNYGLASFKSFLKSEFSEENLEFWIACEDYKKIKS 69
Query: 92 IFGWMLFLALTLYDLFL-----LNFEASVFDKFIVGLLLGCFQICMVTSTLYHVFSCKSE 146
M A +Y+ F+ F K I L + + + +
Sbjct: 70 PAK-MAEKAKQIYEEFIQTEAPKEVNIDHFTKDITMKNLVEPSLSSFDMAQKRIHALMEK 128
Query: 147 RHFHNFLTFDLF 158
F+ + +
Sbjct: 129 DSLPRFVRSEFY 140
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.70A {Haemophilus
influenzae}
Length = 177
Score = 26.4 bits (59), Expect = 6.5
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 177 RVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQW 214
++ YGI G + T E F + ++ +W
Sbjct: 7 KLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEW 44
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 27.2 bits (61), Expect = 6.6
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 11/43 (25%)
Query: 131 CMVTSTLYHVFSCKSERH-------FHN-FLTFDLFGIALSLL 165
+VT + + + SE + N +L L I LS+
Sbjct: 904 VLVTIEMCNALNSLSENQSLMRMPPWVNIWL---LGSICLSMS 943
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human
RGS17(Z2), regulator of G-protein signali opioid
receptor interacting protein; 2.40A {Homo sapiens}
Length = 158
Score = 26.1 bits (57), Expect = 9.1
Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 7/133 (5%)
Query: 32 NSKSPSASPSAITLLSYHEAPTHLQFNPYILSGYRGYLSTKMCIESI-FWMTNETINIWS 90
N S +P+A +LS+ + + P + +R +L T+ E++ FW+ E +
Sbjct: 17 NLYFQSMNPTAEEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQ 76
Query: 91 HIFGWMLFLALTLYDLFLLN--FEASVFDKFIVGLLLGCFQ---ICMVTSTLYHVFSCKS 145
+ + A +Y+ ++ + D + ++ M +++
Sbjct: 77 NKKV-IEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMH 135
Query: 146 ERHFHNFLTFDLF 158
F FL ++
Sbjct: 136 RDSFPRFLNSQIY 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.458
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,815,301
Number of extensions: 214543
Number of successful extensions: 435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 15
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.7 bits)