RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15881
         (248 letters)



>d2f1la2 b.43.3.4 (A:7-95) 16S rRNA processing protein RimM,
           N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 89

 Score = 27.2 bits (60), Expect = 0.56
 Identities = 6/44 (13%), Positives = 16/44 (36%)

Query: 177 RVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVV 220
           +++ +YGI G   +   T   +     +   +    +     +V
Sbjct: 7   KIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELV 50


>d1eyfa_ g.48.1.1 (A:) Ada DNA repair protein, N-terminal domain
           (N-Ada 10) {Escherichia coli [TaxId: 562]}
          Length = 92

 Score = 27.1 bits (60), Expect = 0.68
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 126 GCFQICMVTSTLYHVFSCKSER-HFHNFLTFDLFGIALSLLGYTTCSR 172
           G F   + T+ ++   SC++      N   +     AL+  G+  C R
Sbjct: 25  GEFVFAVRTTGIFCRPSCRARHALRENVSFYANASEALA-AGFRPCKR 71


>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 25.0 bits (54), Expect = 9.1
 Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 19/132 (14%)

Query: 110 NFEASVFDKFIVGLLLGCFQICMVTSTLYHVFSCKSERHFHNFLTFDLFGIALSLLGYTT 169
           +FE    + F     +      +VT  + +  +  SE    + +    +           
Sbjct: 360 HFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSEN--QSLMRMPPWV---------- 407

Query: 170 CSRMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVVLALYYWHNT 229
            +  LL  +     +S    ++Y+   P  F    +D      QW     +       + 
Sbjct: 408 -NIWLLGSICLS--MSLHFLILYVDPLPMIFKLKALDL----TQWLMVLKISLPVIGLDE 460

Query: 230 GIKYIEYRMNHG 241
            +K+I      G
Sbjct: 461 ILKFIARNYLEG 472


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.458 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 980,070
Number of extensions: 43924
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 12
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.0 bits)