BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15882
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YEV|A Chain A, Structure Of Caa3-Type Cytochrome Oxidase
pdb|2YEV|D Chain D, Structure Of Caa3-Type Cytochrome Oxidase
Length = 791
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 8 DCQEWQNFYLATVFAIFIACMILQIPRLNIHPDIKMLVFVCWAAYGVV 55
+ W + AT+FA F+A L + P++ M VF+ AYG+V
Sbjct: 553 NSSFWPFYSAATLFAFFVAVAALPV------PNVWMWVFLALFAYGLV 594
>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing
Residues 1-317 Complex With Bound Tungstate
pdb|1CKJ|B Chain B, Casein Kinase I Delta Truncation Mutant Containing
Residues 1-317 Complex With Bound Tungstate
pdb|1CKI|A Chain A, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1-317
pdb|1CKI|B Chain B, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1-317
Length = 317
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 22 AIFIACMILQIPRLNIHPDI-KMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVM 80
AI + C+ + P+L+I I KM+ G+ PT+ W G ++ ++ +L P +
Sbjct: 36 AIKLECVKTKHPQLHIESKIYKMM----QGGVGI-PTIRWCGAEGDYNVMVMELLGPSLE 90
Query: 81 GMYGISGLAFLIYITRFPECFFTGKVDYIGSSH 113
++ F + +++YI S +
Sbjct: 91 DLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN 123
>pdb|3QKW|A Chain A, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
pdb|3QKW|B Chain B, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
pdb|3QKW|C Chain C, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
pdb|3QKW|D Chain D, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
Length = 332
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 17/85 (20%)
Query: 57 TVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWW 116
V V+ G WD+P + P +GL I+ PE F S + W
Sbjct: 146 NVSKTVVQGMWDHPTQAPMFP--------AGLKREIHFPGNPERF---------SFVKEW 188
Query: 117 HFFVVLALYYWHNTGIKYIEYRMRY 141
+ + L +Y W N + +++ Y
Sbjct: 189 KYDIPLKVYTWQNVELPQNVHKINY 213
>pdb|3RHZ|A Chain A, Structure And Functional Analysis Of A New Subfamily Of
Glycosyltransferases Required For Glycosylation Of
Serine-Rich Streptococcal Adhesions
pdb|3RHZ|B Chain B, Structure And Functional Analysis Of A New Subfamily Of
Glycosyltransferases Required For Glycosylation Of
Serine-Rich Streptococcal Adhesions
Length = 339
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 17/85 (20%)
Query: 57 TVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWW 116
V V+ G WD+P + P +GL I+ PE F S + W
Sbjct: 154 NVSKTVVQGMWDHPTQAPMFP--------AGLKREIHFPGNPERF---------SFVKEW 196
Query: 117 HFFVVLALYYWHNTGIKYIEYRMRY 141
+ + L +Y W N + +++ Y
Sbjct: 197 KYDIPLKVYTWQNVELPQNVHKINY 221
>pdb|3UYS|A Chain A, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|B Chain B, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|C Chain C, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|D Chain D, Crystal Structure Of Apo Human Ck1d
pdb|3UYT|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|C Chain C, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|D Chain D, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UZP|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
Form
pdb|3UZP|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
Form
pdb|4HNF|A Chain A, Crystal Structure Of Ck1d In Complex With Pf4800567
pdb|4HNF|B Chain B, Crystal Structure Of Ck1d In Complex With Pf4800567
pdb|4HGT|A Chain A, Crystal Structure Of Ck1d With Compound 13
pdb|4HGT|B Chain B, Crystal Structure Of Ck1d With Compound 13
Length = 296
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 22 AIFIACMILQIPRLNIHPDI-KMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVM 80
AI + C+ + P+L+I I KM+ G+ PT+ W G ++ ++ +L P +
Sbjct: 38 AIKLECVKTKHPQLHIESKIYKMM----QGGVGI-PTIRWCGAEGDYNVMVMELLGPSLE 92
Query: 81 GMYGISGLAFLIYITRFPECFFTGKVDYIGSSH 113
++ F + +++YI S +
Sbjct: 93 DLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN 125
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 25.8 bits (55), Expect = 9.8, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 90 FLIYITRFPECFFTGKVDYIGSSHQWWHFFVVLA 123
+ ++ T F F D++ H W F+VLA
Sbjct: 771 YSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLA 804
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.334 0.145 0.522
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,745,270
Number of Sequences: 62578
Number of extensions: 186349
Number of successful extensions: 461
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 7
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 47 (22.7 bits)