Query psy15882
Match_columns 149
No_of_seqs 135 out of 952
Neff 6.9
Searched_HMMs 46136
Date Sat Aug 17 00:02:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0748|consensus 100.0 6.2E-37 1.3E-41 250.2 12.8 142 1-146 137-283 (286)
2 PF03006 HlyIII: Haemolysin-II 100.0 1.2E-30 2.7E-35 203.3 11.9 120 1-126 98-220 (222)
3 TIGR01065 hlyIII channel prote 99.8 4.7E-18 1E-22 132.9 11.7 102 13-133 98-201 (204)
4 PRK15087 hemolysin; Provisiona 99.7 7E-16 1.5E-20 122.0 12.6 102 12-133 111-213 (219)
5 COG1272 Predicted membrane pro 99.7 4.5E-16 9.8E-21 123.6 9.2 106 12-134 116-221 (226)
6 KOG4243|consensus 97.3 8.2E-06 1.8E-10 65.2 -5.1 79 39-138 212-290 (298)
7 PF05875 Ceramidase: Ceramidas 92.2 5.1 0.00011 32.1 13.5 55 80-135 175-237 (262)
8 PF13965 SID-1_RNA_chan: dsRNA 73.6 58 0.0013 29.6 10.9 23 100-126 525-547 (570)
9 KOG3059|consensus 63.4 87 0.0019 26.1 12.0 96 32-144 103-225 (292)
10 PF05915 DUF872: Eukaryotic pr 60.7 20 0.00042 25.7 4.4 54 5-59 33-92 (115)
11 KOG4255|consensus 59.7 1E+02 0.0022 26.8 9.0 50 14-63 113-166 (439)
12 KOG2970|consensus 46.0 81 0.0018 26.5 6.3 32 104-139 283-314 (319)
13 PF02076 STE3: Pheromone A rec 43.9 94 0.002 25.5 6.4 35 74-109 28-62 (283)
14 PF03839 Sec62: Translocation 42.1 1.2E+02 0.0026 24.3 6.5 17 43-59 138-154 (224)
15 KOG2927|consensus 41.5 44 0.00095 28.7 4.1 19 38-56 211-230 (372)
16 PF10678 DUF2492: Protein of u 30.1 35 0.00075 22.9 1.5 37 111-148 5-47 (78)
17 KOG2310|consensus 29.6 14 0.0003 33.6 -0.7 18 97-114 230-249 (646)
18 cd04907 ACT_ThrD-I_2 Second of 29.4 12 0.00026 24.9 -0.9 13 92-106 3-15 (81)
19 TIGR03853 matur_matur probable 29.3 38 0.00082 22.7 1.5 38 111-148 3-45 (77)
20 PF02694 UPF0060: Uncharacteri 28.0 2.2E+02 0.0049 20.2 5.8 63 36-111 29-91 (107)
21 PF09796 QCR10: Ubiquinol-cyto 26.5 1.4E+02 0.0031 19.1 3.8 24 76-99 14-37 (64)
22 PF08492 SRP72: SRP72 RNA-bind 23.5 32 0.0007 21.8 0.4 7 98-104 45-51 (59)
23 PF04080 Per1: Per1-like ; In 23.4 4.2E+02 0.009 21.7 12.9 28 104-135 239-266 (267)
24 PRK02237 hypothetical protein; 21.6 3.1E+02 0.0067 19.6 6.0 63 37-111 31-93 (109)
25 PF09586 YfhO: Bacterial membr 21.0 4.9E+02 0.011 24.1 7.7 54 14-70 280-334 (843)
26 PF09604 Potass_KdpF: F subuni 20.2 1.5E+02 0.0033 15.4 2.9 11 91-101 15-25 (25)
No 1
>KOG0748|consensus
Probab=100.00 E-value=6.2e-37 Score=250.22 Aligned_cols=142 Identities=27% Similarity=0.434 Sum_probs=127.2
Q ss_pred CcccccCCchHHHHHHHHHHHHHHHHHHH-hcccccCcC--cchHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhHH
Q psy15882 1 MSQYCHQDCQEWQNFYLATVFAIFIACMI-LQIPRLNIH--PDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLP 77 (149)
Q Consensus 1 y~fyC~p~~~~~~~~Yl~~~~~l~~~~~~-~~~~~f~~~--r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~ 77 (149)
|+|+|+| .++.+|+.++++++++++. .+.++|++| |..|+.+|+.+|.++++|++|++...+|.+ +.+...+.
T Consensus 137 y~f~c~~---~~~~iy~~~~~~lgi~~~~~~l~~~~~~~~~r~~R~~~f~~~~~~~i~P~~h~~~~~g~~~-~~~~~~~~ 212 (286)
T KOG0748|consen 137 YAFYCHP---FFRLIYLPIILVLGLLAIFVSLSDKFRTPKRRPLRAGVFLLLGLSGILPLLHRLILFGGRG-PEVVIALG 212 (286)
T ss_pred Hhcccch---HHHHHHHHHHHHHHHHHheeechhhhCCccchhhHHHHHHHHHHhhccHhhhheeeecCCc-cceehhhh
Confidence 7899999 9999999999999998765 456899766 699999999999999999999999877654 44566789
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccCCCccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCC
Q psy15882 78 RVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVVLALYYWHNTGIKYIEYRMRY--MTHAN 146 (149)
Q Consensus 78 ~~~~~~~~y~~G~~~Y~~riPEr~~PG~FD~~g~SHqi~Hi~v~~g~~~~~~~~i~~~~~r~~~--~C~~~ 146 (149)
++..|+++|++|+++|++|+||||+|||||++||||||||++|++|++.++...+.++++|++. +|+..
T Consensus 213 ~~~~~~~~yi~ga~fY~~riPER~~PGkfD~~G~SHQifHv~vv~~a~~~~~a~~~~~~~~~~~~~~~~~~ 283 (286)
T KOG0748|consen 213 YVILMAVLYLLGALFYATRIPERWFPGKFDIWGHSHQIFHVLVVLAALFHLEAVLLDYEWRHSHLCGCPVF 283 (286)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcccCCCccceeCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc
Confidence 9999999999999999999999999999999999999999999999997777777899999987 56654
No 2
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=99.97 E-value=1.2e-30 Score=203.30 Aligned_cols=120 Identities=33% Similarity=0.564 Sum_probs=105.6
Q ss_pred CcccccCCchHHHHHHHHHHHHHHHHHHHh-cccccCcC--cchHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhHH
Q psy15882 1 MSQYCHQDCQEWQNFYLATVFAIFIACMIL-QIPRLNIH--PDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLP 77 (149)
Q Consensus 1 y~fyC~p~~~~~~~~Yl~~~~~l~~~~~~~-~~~~f~~~--r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~ 77 (149)
|+++|++ .+++.|++.+.++++.++.. ..++++++ |..|+..|+++|+++++|+.|+....++.+++. . +.
T Consensus 98 ~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~~~~~~~~~~~--~-~~ 171 (222)
T PF03006_consen 98 YGFYCHP---WLGWFYLAFIWILALIGIVLSLFPCFSSPRFRWLRTIFFLLLGWSGIIPIFHRIFFLGGWGSPD--P-LW 171 (222)
T ss_pred hhccccc---hHHHHHHHHHHHHHHHhHHhhcchhhcCCccceeeehHhHHHHHHHHhhhHHHHHHhccccchH--H-HH
Confidence 5788999 99999999999999887754 44666554 799999999999999999999776666565544 4 78
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccCCCccccCCCchHHHHHHHHHHHHH
Q psy15882 78 RVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVVLALYY 126 (149)
Q Consensus 78 ~~~~~~~~y~~G~~~Y~~riPEr~~PG~FD~~g~SHqi~Hi~v~~g~~~ 126 (149)
+++.++++|++|+++|++|+|||++||+||++|+||||||++|++|+..
T Consensus 172 ~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD~~g~sHqi~Hi~v~~~~~~ 220 (222)
T PF03006_consen 172 LLILGGVLYLLGAVFYATRIPERWFPGKFDIWGHSHQIWHIFVVLAALC 220 (222)
T ss_pred HHHHHHHHHHHhHHHhhhccccccCCCCcCCCCccHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999985
No 3
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=99.77 E-value=4.7e-18 Score=132.89 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHhccccc--CcCcchHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHHH
Q psy15882 13 QNFYLATVFAIFIACMILQIPRL--NIHPDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAF 90 (149)
Q Consensus 13 ~~~Yl~~~~~l~~~~~~~~~~~f--~~~r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~ 90 (149)
++.++.++..++++++. .|.+ +++|++|+.+|+++|+++++|+.+.. .. . ....+.+.+.++++|++|+
T Consensus 98 ~~~~~~~iw~la~~gi~--~~~~~~~~~r~~r~~~y~~~G~~~v~~~~~~~-~~--~----~~~~~~~l~~gg~~Y~~G~ 168 (204)
T TIGR01065 98 GWTVLWIIWGLAIGGII--YKLFFHKRPRWLSLFLYLIMGWLVVLVIKPLY-HN--L----PGAGFSLLAAGGLLYTVGA 168 (204)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHccCCCchhHHHHHHHHHHHHHHHHHHHH-Hh--C----CHHHHHHHHHHhHHHHcch
Confidence 33345555555555554 2333 34589999999999999988766532 11 1 2245788899999999999
Q ss_pred HHHhhcCCcccCCCccccCCCchHHHHHHHHHHHHHHHHHHHH
Q psy15882 91 LIYITRFPECFFTGKVDYIGSSHQWWHFFVVLALYYWHNTGIK 133 (149)
Q Consensus 91 ~~Y~~riPEr~~PG~FD~~g~SHqi~Hi~v~~g~~~~~~~~i~ 133 (149)
+||++|+|||+.| |||||++|++|+.. |+.++.
T Consensus 169 ~fY~~~~p~~~~~---------H~iwH~fV~~g~~~-h~~~i~ 201 (204)
T TIGR01065 169 IFYALKWPIPFTY---------HAIWHLFVLGASAC-HFVAIL 201 (204)
T ss_pred HheeecCCCCCCc---------ChHHHHHHHHHHHH-HHHHHH
Confidence 9999999999754 99999999999994 666665
No 4
>PRK15087 hemolysin; Provisional
Probab=99.68 E-value=7e-16 Score=122.00 Aligned_cols=102 Identities=11% Similarity=0.197 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCcCcchHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHHHH
Q psy15882 12 WQNFYLATVFAIFIACMILQIPRLNIHPDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFL 91 (149)
Q Consensus 12 ~~~~Yl~~~~~l~~~~~~~~~~~f~~~r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~ 91 (149)
+.+..+..+..++++++....-..+++|++|+.+|++|||++++|+.|..... ....+.+++.+|++|++|++
T Consensus 111 ~~~~l~~~iW~~a~~Gi~~~~~~~~~~r~l~~~~Yl~mGw~~v~~~~~l~~~~-------~~~~l~~l~~GG~~Y~~G~~ 183 (219)
T PRK15087 111 LARGLMIVIWSLALLGILFKLAFAHRFKVLSLVTYLAMGWLSLIVIYQLAIKL-------AIGGVTLLAVGGVVYSLGVI 183 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhC-------CHHHHHHHHHHhHHHHhhHH
Confidence 34445555555666555432222244589999999999999999999876432 23457888999999999999
Q ss_pred HHhhc-CCcccCCCccccCCCchHHHHHHHHHHHHHHHHHHHH
Q psy15882 92 IYITR-FPECFFTGKVDYIGSSHQWWHFFVVLALYYWHNTGIK 133 (149)
Q Consensus 92 ~Y~~r-iPEr~~PG~FD~~g~SHqi~Hi~v~~g~~~~~~~~i~ 133 (149)
||+.| +|| ||||||+||++|+.. |+.++.
T Consensus 184 fY~~~~~p~------------~H~IwH~fVl~ga~~-H~~ai~ 213 (219)
T PRK15087 184 FYVCKRIPY------------NHAIWHGFVLGGSVC-HFLAIY 213 (219)
T ss_pred HHccCCCCC------------chhHHHHHHHHHHHH-HHHHHH
Confidence 99995 776 799999999999995 666665
No 5
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=99.66 E-value=4.5e-16 Score=123.55 Aligned_cols=106 Identities=16% Similarity=0.235 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCcCcchHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHHHH
Q psy15882 12 WQNFYLATVFAIFIACMILQIPRLNIHPDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFL 91 (149)
Q Consensus 12 ~~~~Yl~~~~~l~~~~~~~~~~~f~~~r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~ 91 (149)
+++.++.++..++++++....-.-+++|++|+.+|++|||+++.|+.+..... ...++.+++.+|++|++|++
T Consensus 116 ~~~~~~~iiW~lal~Gi~~kl~~~~~~r~ls~~~yl~mGw~~v~~~~~l~~~l-------~~~~~~~l~~GGv~YsvG~i 188 (226)
T COG1272 116 LGWILLGLIWGLALAGILFKLFFKKRFRKLSLVLYLAMGWLGLIVIKPLIAKL-------GLIGLVLLALGGVLYSVGAI 188 (226)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhccCcCceeeehhhHHHHHHHHHHHHHHHHhC-------chHHHHHHHHHhHHheeeeE
Confidence 67888888899999888765433366799999999999999998888766432 22568899999999999999
Q ss_pred HHhhcCCcccCCCccccCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy15882 92 IYITRFPECFFTGKVDYIGSSHQWWHFFVVLALYYWHNTGIKY 134 (149)
Q Consensus 92 ~Y~~riPEr~~PG~FD~~g~SHqi~Hi~v~~g~~~~~~~~i~~ 134 (149)
||+.|+ |.++++|||||+||++|+.+ |+.++.+
T Consensus 189 fY~~~~---------~~~~~~H~iwH~fVv~ga~~-Hf~ai~~ 221 (226)
T COG1272 189 FYVLRI---------DRIPYSHAIWHLFVVGGAAC-HFIAILF 221 (226)
T ss_pred EEEEee---------ccCCchHHHHHHHHHHHHHH-HHHHHHH
Confidence 999998 66678999999999999994 7777763
No 6
>KOG4243|consensus
Probab=97.26 E-value=8.2e-06 Score=65.24 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=54.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHHHHHHhhcCCcccCCCccccCCCchHHHHH
Q psy15882 39 PDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHF 118 (149)
Q Consensus 39 r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~riPEr~~PG~FD~~g~SHqi~Hi 118 (149)
|.+.+.+|+.||.. |.+-... +.+..++.++..+|.+|.+|.+|+.+- |.-. -.|.|||+
T Consensus 212 K~lEt~~Ylvmg~g---Palvv~s-------m~~~~Gl~~l~~GG~~Y~lGvvFFK~D-------G~ip---fAHAIWHL 271 (298)
T KOG4243|consen 212 KVLETFFYLVMGFG---PALVVTS-------MNNTDGLQELATGGLFYCLGVVFFKSD-------GIIP---FAHAIWHL 271 (298)
T ss_pred HHHHHHHHHHHhcC---ceEEEEE-------eCCchhHHHHHhCCEEEEEEEEEEecC-------Ccee---hHHHHHHH
Confidence 78889999988874 3221111 112446788889999999999998542 2211 26999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15882 119 FVVLALYYWHNTGIKYIEYR 138 (149)
Q Consensus 119 ~v~~g~~~~~~~~i~~~~~r 138 (149)
||++|+-+ |+-|+...-+|
T Consensus 272 FV~l~A~c-HyYAi~~~Ly~ 290 (298)
T KOG4243|consen 272 FVALAAGC-HYYAIWKYLYR 290 (298)
T ss_pred HHHHHcch-hHHHHHHHHhC
Confidence 99999985 66667655454
No 7
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=92.19 E-value=5.1 Score=32.09 Aligned_cols=55 Identities=15% Similarity=0.307 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhhcCC--cccCC------CccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy15882 80 MGMYGISGLAFLIYITRFP--ECFFT------GKVDYIGSSHQWWHFFVVLALYYWHNTGIKYI 135 (149)
Q Consensus 80 ~~~~~~y~~G~~~Y~~riP--Er~~P------G~FD~~g~SHqi~Hi~v~~g~~~~~~~~i~~~ 135 (149)
..+.+.+.+|.++-..-.+ +.+.. ....+.-+-|-|||+++.+|++. .....++.
T Consensus 175 ~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~-~~~~~~~~ 237 (262)
T PF05875_consen 175 LFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYL-LIVFVAYL 237 (262)
T ss_pred HHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4566667777666654332 11111 12222335799999999999983 55444443
No 8
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=73.56 E-value=58 Score=29.57 Aligned_cols=23 Identities=39% Similarity=1.025 Sum_probs=18.1
Q ss_pred ccCCCccccCCCchHHHHHHHHHHHHH
Q psy15882 100 CFFTGKVDYIGSSHQWWHFFVVLALYY 126 (149)
Q Consensus 100 r~~PG~FD~~g~SHqi~Hi~v~~g~~~ 126 (149)
+..||-|| +|++||.+-++|...
T Consensus 525 Cil~~f~D----~HDiwH~~SA~alff 547 (570)
T PF13965_consen 525 CILLGFFD----WHDIWHFLSAIALFF 547 (570)
T ss_pred CcCcCccc----cHHHHHHHHHHHHHH
Confidence 33467777 799999999998774
No 9
>KOG3059|consensus
Probab=63.45 E-value=87 Score=26.09 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=56.3
Q ss_pred ccccCcC------cchHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH------------------HHHHH
Q psy15882 32 IPRLNIH------PDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGM------------------YGISG 87 (149)
Q Consensus 32 ~~~f~~~------r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~------------------~~~y~ 87 (149)
.|+.+.+ +.+++.+.+..++.++.|+.+.+......+ ..-.+..+..+.. .-.+.
T Consensus 103 ~~~~r~~sl~~~~~~lks~~~vt~~ly~lsPVl~TLt~SiSsD-sI~a~sv~l~L~~~ff~~y~~s~~~vs~~lS~na~v 181 (292)
T KOG3059|consen 103 SPRGRTLSLALLPEDLKSIFTVTLFLYGLSPVLKTLTKSISSD-SIWAMSVWLLLGNLFFHDYGISTIRVSGPLSLNAAV 181 (292)
T ss_pred ccccccCChhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcCCcc-hHHHHHHHHHHHHHhcccccccccccCCcchHHHHH
Confidence 3566543 478889999999999999999886432222 1111111111111 12455
Q ss_pred HHHHHHhhcCCcccCCCccccCCCchHHHHHHHHHHHHHHHHHHHH-HHHHHhc--CCCC
Q psy15882 88 LAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVVLALYYWHNTGIK-YIEYRMR--YMTH 144 (149)
Q Consensus 88 ~G~~~Y~~riPEr~~PG~FD~~g~SHqi~Hi~v~~g~~~~~~~~i~-~~~~r~~--~~C~ 144 (149)
.+.+++++|.|.+ +|+|.++-.. .|..++. ..+.|.+ .+|.
T Consensus 182 ~~sv~LaSRl~~~---------------~~vF~fllfa-i~~~al~p~~~~~i~~~~~~~ 225 (292)
T KOG3059|consen 182 SASVLLASRLEKS---------------IHVFNFLLFA-IQLFALLPNFRKRIKKVIPRS 225 (292)
T ss_pred HHHHHHHHhcCCc---------------hHHHHHHHHH-HHHHHHHHHHHHHhhcccccc
Confidence 6789999998885 3555555544 2444454 5666655 4453
No 10
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=60.65 E-value=20 Score=25.71 Aligned_cols=54 Identities=19% Similarity=0.391 Sum_probs=29.2
Q ss_pred ccCCch-HHHHHHHHHHHHHH-HHHHH----hcccccCcCcchHHHHHHHHHHHHHHHHHH
Q psy15882 5 CHQDCQ-EWQNFYLATVFAIF-IACMI----LQIPRLNIHPDIKMLVFVCWAAYGVVPTVH 59 (149)
Q Consensus 5 C~p~~~-~~~~~Yl~~~~~l~-~~~~~----~~~~~f~~~r~~R~~~f~~~g~~~~~P~~h 59 (149)
|+|.++ .|+.+.+++.+++. ++.++ +...... .+.-|...+.++|...++|=+.
T Consensus 33 c~P~~k~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~-~~~~~~~~llilG~L~fIPG~Y 92 (115)
T PF05915_consen 33 CHPKVKIPWKSIALAVFLLIFGTVLIIIGLLLFFGHID-GDRDRGWALLILGILCFIPGFY 92 (115)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCcccchHHHHHHHHHhccHH
Confidence 666111 16677776655433 22221 1223322 4566777888888887777443
No 11
>KOG4255|consensus
Probab=59.71 E-value=1e+02 Score=26.79 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHH---hcccccCc-CcchHHHHHHHHHHHHHHHHHHHHHH
Q psy15882 14 NFYLATVFAIFIACMI---LQIPRLNI-HPDIKMLVFVCWAAYGVVPTVHWAVI 63 (149)
Q Consensus 14 ~~Yl~~~~~l~~~~~~---~~~~~f~~-~r~~R~~~f~~~g~~~~~P~~h~~~~ 63 (149)
+-++.....+++++.. ...|.-.+ |...-...|+.+|+++++|.+-.+.+
T Consensus 113 ~afl~L~F~LAivdc~SnVtFLPFMs~lpp~fL~afFvG~GLSaLlPsllaLaQ 166 (439)
T KOG4255|consen 113 WAFLSLLFGLAIVDCTSNVTFLPFMSQLPPAFLNAFFVGMGLSALLPSLLALAQ 166 (439)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhhhCChHHHHHHHHhccHHHHHHHHHHHHc
Confidence 4455566666665432 23343322 33334459999999999999877654
No 12
>KOG2970|consensus
Probab=45.99 E-value=81 Score=26.53 Aligned_cols=32 Identities=16% Similarity=0.375 Sum_probs=21.4
Q ss_pred CccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15882 104 GKVDYIGSSHQWWHFFVVLALYYWHNTGIKYIEYRM 139 (149)
Q Consensus 104 G~FD~~g~SHqi~Hi~v~~g~~~~~~~~i~~~~~r~ 139 (149)
+-+| +|.+||+..+--+.++.-.-..+.+.|.
T Consensus 283 ~~iD----AHALWHlaTIplt~~~~~Fv~~d~~~~t 314 (319)
T KOG2970|consen 283 WLID----AHALWHLATIPLTILWYDFVSDDYDFAT 314 (319)
T ss_pred hhcc----hHHHHHhhcCccHHHHHHHhhchhhhhc
Confidence 6677 8999999877655545554445655553
No 13
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=43.95 E-value=94 Score=25.50 Aligned_cols=35 Identities=11% Similarity=-0.079 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCcccCCCccccC
Q psy15882 74 MLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYI 109 (149)
Q Consensus 74 ~~~~~~~~~~~~y~~G~~~Y~~riPEr~~PG~FD~~ 109 (149)
...-|...+-+.+.+-+++..-.. |.++||++|+-
T Consensus 28 ~li~Wl~l~nl~~~INaiIW~~n~-~~~~~~wCDI~ 62 (283)
T PF02076_consen 28 SLIFWLFLSNLIYFINAIIWRDND-INWWPVWCDIS 62 (283)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCC-CccCceeeeeh
Confidence 345677777888888999999998 88899999983
No 14
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=42.06 E-value=1.2e+02 Score=24.27 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15882 43 MLVFVCWAAYGVVPTVH 59 (149)
Q Consensus 43 ~~~f~~~g~~~~~P~~h 59 (149)
.+.|++++..|++-++-
T Consensus 138 gv~YlS~~~lgll~~~~ 154 (224)
T PF03839_consen 138 GVYYLSVGALGLLGLFF 154 (224)
T ss_pred eeehhHHHHHHHHHHHH
Confidence 34677777666555443
No 15
>KOG2927|consensus
Probab=41.52 E-value=44 Score=28.70 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=9.6
Q ss_pred CcchH-HHHHHHHHHHHHHH
Q psy15882 38 HPDIK-MLVFVCWAAYGVVP 56 (149)
Q Consensus 38 ~r~~R-~~~f~~~g~~~~~P 56 (149)
||.+| .+.|+++|..|++-
T Consensus 211 P~~mR~gvyY~sig~~gfl~ 230 (372)
T KOG2927|consen 211 PRRMRQGVYYLSIGAGGFLA 230 (372)
T ss_pred cHHHhcceeeeecchhHHHH
Confidence 44333 34566666655544
No 16
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=30.09 E-value=35 Score=22.90 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=23.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHH-HHHHHHh-----cCCCCCCcc
Q psy15882 111 SSHQWWHFFVVLALYYWHNTGI-KYIEYRM-----RYMTHANKL 148 (149)
Q Consensus 111 ~SHqi~Hi~v~~g~~~~~~~~i-~~~~~r~-----~~~C~~~~~ 148 (149)
|.|++.|+++.-+..+ -...+ ..+..+- -++|+++.+
T Consensus 5 HgHeVL~mmi~~~~~~-t~~~L~~ai~~~FG~~arFhTCSae~m 47 (78)
T PF10678_consen 5 HGHEVLNMMIESGNPY-TKEELKAAIIEKFGEDARFHTCSAEGM 47 (78)
T ss_pred HHHHHHHHHHHcCCCc-CHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 7899999998887653 22333 2333332 278998875
No 17
>KOG2310|consensus
Probab=29.62 E-value=14 Score=33.57 Aligned_cols=18 Identities=33% Similarity=0.661 Sum_probs=15.2
Q ss_pred CCcccCCCcccc--CCCchH
Q psy15882 97 FPECFFTGKVDY--IGSSHQ 114 (149)
Q Consensus 97 iPEr~~PG~FD~--~g~SHq 114 (149)
+||.+.|+-+|+ |||-|+
T Consensus 230 lpE~flp~F~DlviWGHEHE 249 (646)
T KOG2310|consen 230 LPEQFLPDFLDLVIWGHEHE 249 (646)
T ss_pred CcHhHhhhhhhheeeccccc
Confidence 699999999997 688886
No 18
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.39 E-value=12 Score=24.86 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=9.9
Q ss_pred HHhhcCCcccCCCcc
Q psy15882 92 IYITRFPECFFTGKV 106 (149)
Q Consensus 92 ~Y~~riPEr~~PG~F 106 (149)
+++..+||| ||.|
T Consensus 3 ~~~v~iPEr--pGal 15 (81)
T cd04907 3 LFRFEFPER--PGAL 15 (81)
T ss_pred EEEEEcCCC--CCHH
Confidence 456789996 9975
No 19
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=29.32 E-value=38 Score=22.69 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=24.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCCcc
Q psy15882 111 SSHQWWHFFVVLALYYWHNTGIKYIEYRM-----RYMTHANKL 148 (149)
Q Consensus 111 ~SHqi~Hi~v~~g~~~~~~~~i~~~~~r~-----~~~C~~~~~ 148 (149)
|.|++.|+++.-+.-+-...-...+.-+- -++|+++.+
T Consensus 3 HgHeVL~mml~~~~~~t~~~L~~~i~~~FG~~arFhTCSa~~m 45 (77)
T TIGR03853 3 HGHEVLNLMLASGEPYTRESLKAAIEQKFGEDARFHTCSAEGM 45 (77)
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHHHHhCCCceEeecccccC
Confidence 68999999988876532322222333332 278998875
No 20
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=28.04 E-value=2.2e+02 Score=20.19 Aligned_cols=63 Identities=19% Similarity=0.108 Sum_probs=38.9
Q ss_pred CcCcchHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHHHHHHhhcCCcccCCCccccCCC
Q psy15882 36 NIHPDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGS 111 (149)
Q Consensus 36 ~~~r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~riPEr~~PG~FD~~g~ 111 (149)
+++.++-..--++++.++.+|.+|.- ..| + -....+-+|.+.++..... =|+..|-+.|+.|.
T Consensus 29 ~k~~~~~~~G~~~L~lfg~l~Tl~p~--~fG------R----vYAAYGGvfI~~Sl~W~w~-vdg~~Pd~~D~iGa 91 (107)
T PF02694_consen 29 GKSPWWLLPGALSLALFGWLLTLQPA--AFG------R----VYAAYGGVFIVASLLWGWL-VDGVRPDRWDWIGA 91 (107)
T ss_pred CCCeeeHhhHHHHHHHHHHHhhcCcc--cch------h----HHHHhhhhHHHHHHHHHhh-hcCcCCChHHHHhH
Confidence 34446666666777788888887641 111 1 1133455666666666655 46678999999885
No 21
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=26.52 E-value=1.4e+02 Score=19.15 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCc
Q psy15882 76 LPRVMGMYGISGLAFLIYITRFPE 99 (149)
Q Consensus 76 ~~~~~~~~~~y~~G~~~Y~~riPE 99 (149)
.......|...++|+++|...+|-
T Consensus 14 ~p~~a~wG~aa~~~v~~f~~~vPr 37 (64)
T PF09796_consen 14 GPNLALWGGAAGAAVLFFTSGVPR 37 (64)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcH
Confidence 344556667778899999999884
No 22
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=23.47 E-value=32 Score=21.77 Aligned_cols=7 Identities=29% Similarity=0.648 Sum_probs=5.7
Q ss_pred CcccCCC
Q psy15882 98 PECFFTG 104 (149)
Q Consensus 98 PEr~~PG 104 (149)
||||.|-
T Consensus 45 PERWLP~ 51 (59)
T PF08492_consen 45 PERWLPK 51 (59)
T ss_pred ccccCch
Confidence 8999884
No 23
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=23.39 E-value=4.2e+02 Score=21.72 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=20.5
Q ss_pred CccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy15882 104 GKVDYIGSSHQWWHFFVVLALYYWHNTGIKYI 135 (149)
Q Consensus 104 G~FD~~g~SHqi~Hi~v~~g~~~~~~~~i~~~ 135 (149)
+.+| +|.+||...+--+..|+.-.+.|.
T Consensus 239 ~~lD----AHALWHl~Tip~~~~wy~Fl~~D~ 266 (267)
T PF04080_consen 239 WLLD----AHALWHLATIPPTYLWYDFLIDDA 266 (267)
T ss_pred ccch----HHHHHHHHHhhHHHHHHHHHHHhc
Confidence 4677 899999998877665666555553
No 24
>PRK02237 hypothetical protein; Provisional
Probab=21.63 E-value=3.1e+02 Score=19.55 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=37.7
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHHHHHHhhcCCcccCCCccccCCC
Q psy15882 37 IHPDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGS 111 (149)
Q Consensus 37 ~~r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~~~~~~~~~~~~~~~~y~~G~~~Y~~riPEr~~PG~FD~~g~ 111 (149)
++.++-..-.++++.++.+|.+|-.. . ..+ -....+-+|.+.++..... =|...|-+.|..|.
T Consensus 31 ks~~~~~pg~~~L~lfg~llTl~p~~-~------~GR----vYAAYGGvyI~~Sl~W~w~-vdg~~Pd~~D~iGa 93 (109)
T PRK02237 31 KSAWWLLPGALSLALFGWLLTLQPDA-A------FGR----VYAAYGGVYVAGSLLWLWV-VDGVRPDRWDWIGA 93 (109)
T ss_pred CchhHHHHHHHHHHHHHHHHhcCCch-h------hhh----HHHHhhhHHHHHHHHHHHH-hcCcCCChhHHHhH
Confidence 33466666677777778888766421 0 111 1233445566666666544 46678999998885
No 25
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=21.04 E-value=4.9e+02 Score=24.12 Aligned_cols=54 Identities=13% Similarity=0.275 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhcccccCcC-cchHHHHHHHHHHHHHHHHHHHHHHhhCCCch
Q psy15882 14 NFYLATVFAIFIACMILQIPRLNIH-PDIKMLVFVCWAAYGVVPTVHWAVIMGGWDNP 70 (149)
Q Consensus 14 ~~Yl~~~~~l~~~~~~~~~~~f~~~-r~~R~~~f~~~g~~~~~P~~h~~~~~~g~~~~ 70 (149)
+.|.+++.++.+..... ..+.+++ |...+++.+++.++..+|.+..++ +|.+.+
T Consensus 280 ~~y~g~l~li~~~~~~~-~~~~~~~~k~~~~~i~l~~~l~~~~p~~~~i~--~gf~~p 334 (843)
T PF09586_consen 280 NLYCGLLPLILVILYFF-FKKIKKKEKLLFLLILLLLLLSFFIPPLNSIW--NGFSYP 334 (843)
T ss_pred cHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCccc
Confidence 45555554444433322 2333332 333344444455556788888775 355544
No 26
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=20.23 E-value=1.5e+02 Score=15.44 Aligned_cols=11 Identities=45% Similarity=0.646 Sum_probs=7.6
Q ss_pred HHHhhcCCccc
Q psy15882 91 LIYITRFPECF 101 (149)
Q Consensus 91 ~~Y~~riPEr~ 101 (149)
.+|+.-.||||
T Consensus 15 L~~aLl~PErF 25 (25)
T PF09604_consen 15 LFYALLRPERF 25 (25)
T ss_pred HHHHHhCcccC
Confidence 45666669986
Done!