Query psy15882
Match_columns 149
No_of_seqs 135 out of 952
Neff 6.9
Searched_HMMs 29240
Date Sat Aug 17 00:02:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fbk_A DNA repair and telomere 8.7 76 0.0026 26.9 0.1 20 95-114 291-312 (472)
2 3t1i_A Double-strand break rep 8.7 96 0.0033 25.8 0.7 19 96-114 248-268 (431)
3 4fbw_A DNA repair protein RAD3 8.3 82 0.0028 26.1 0.1 19 96-114 229-249 (417)
4 3arc_J Photosystem II reaction 7.0 3.8E+02 0.013 14.8 3.1 16 80-95 17-32 (40)
5 3arc_T Photosystem II reaction 6.2 3.8E+02 0.013 14.1 2.6 14 86-99 12-25 (32)
6 2wq4_A Lectin; LUNG, pathogen, 5.9 61 0.0021 22.7 -1.5 15 89-105 72-86 (156)
7 3tho_B Exonuclease, putative; 5.4 1.6E+02 0.0056 23.3 0.5 19 96-114 193-213 (379)
8 4e8d_A Glycosyl hydrolase, fam 5.0 1.9E+02 0.0065 25.3 0.7 14 101-114 239-252 (595)
9 3msq_A Putative ubiquinone bio 5.0 2.2E+02 0.0075 21.4 1.0 13 111-123 124-136 (224)
10 3thd_A Beta-galactosidase; TIM 4.9 1.9E+02 0.0066 25.5 0.6 14 101-114 246-259 (654)
No 1
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=8.75 E-value=76 Score=26.89 Aligned_cols=20 Identities=30% Similarity=0.732 Sum_probs=15.9
Q ss_pred hcCCcccCCCccccC--CCchH
Q psy15882 95 TRFPECFFTGKVDYI--GSSHQ 114 (149)
Q Consensus 95 ~riPEr~~PG~FD~~--g~SHq 114 (149)
..+||.+.|..+|++ ||.|.
T Consensus 291 ~yipe~ll~~g~DyValGH~H~ 312 (472)
T 4fbk_A 291 SYLPESFIQDFYDFVLWGHEHE 312 (472)
T ss_dssp SSCCGGGSCTTCSEEEEESCCS
T ss_pred ccCChhhhhcCCCEEEecCccc
Confidence 346888889889997 88874
No 2
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=8.68 E-value=96 Score=25.79 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=15.5
Q ss_pred cCCcccCCCccccC--CCchH
Q psy15882 96 RFPECFFTGKVDYI--GSSHQ 114 (149)
Q Consensus 96 riPEr~~PG~FD~~--g~SHq 114 (149)
.+||.+.|..+|++ ||.|.
T Consensus 248 ~ip~~l~~~~~Dyv~lGH~H~ 268 (431)
T 3t1i_A 248 FIPEQFLDDFIDLVIWGHEHE 268 (431)
T ss_dssp SCCGGGSCTTCCEEEECSCCS
T ss_pred cCCHhHhhCCCCEEEeccccc
Confidence 47888888889986 88885
No 3
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=8.28 E-value=82 Score=26.10 Aligned_cols=19 Identities=32% Similarity=0.744 Sum_probs=14.7
Q ss_pred cCCcccCCCccccC--CCchH
Q psy15882 96 RFPECFFTGKVDYI--GSSHQ 114 (149)
Q Consensus 96 riPEr~~PG~FD~~--g~SHq 114 (149)
.+||.+.|..+|++ ||.|.
T Consensus 229 yip~~l~~~~~DyvalGH~H~ 249 (417)
T 4fbw_A 229 YLPESFIQDFYDFVLWGHEHE 249 (417)
T ss_dssp SCCGGGSCTTCSEEEEESCCS
T ss_pred cCchhHhhcCCCEEEecCccc
Confidence 45888888889986 77774
No 4
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=7.01 E-value=3.8e+02 Score=14.79 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhh
Q psy15882 80 MGMYGISGLAFLIYIT 95 (149)
Q Consensus 80 ~~~~~~y~~G~~~Y~~ 95 (149)
....++-.+|.+||.+
T Consensus 17 ~G~~vi~~~giFfyGs 32 (40)
T 3arc_J 17 AGMGVIVIVGLFFYGA 32 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeeEEEeec
Confidence 3345566678899975
No 5
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=6.24 E-value=3.8e+02 Score=14.07 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=9.6
Q ss_pred HHHHHHHHhhcCCc
Q psy15882 86 SGLAFLIYITRFPE 99 (149)
Q Consensus 86 y~~G~~~Y~~riPE 99 (149)
..+|.+|+|.-+.|
T Consensus 12 ~tlgiiFFAI~FRe 25 (32)
T 3arc_T 12 CIIALFFFAIFFRE 25 (32)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhhhcC
Confidence 34577888877765
No 6
>2wq4_A Lectin; LUNG, pathogen, infection, sugar binding protein; HET: SFU; 1.42A {Burkholderia cenocepacia}
Probab=5.95 E-value=61 Score=22.68 Aligned_cols=15 Identities=33% Similarity=0.767 Sum_probs=11.7
Q ss_pred HHHHHhhcCCcccCCCc
Q psy15882 89 AFLIYITRFPECFFTGK 105 (149)
Q Consensus 89 G~~~Y~~riPEr~~PG~ 105 (149)
|.+-|.+|+||. .|+
T Consensus 72 g~ftysskipe~--sgr 86 (156)
T 2wq4_A 72 GCFTYSSKVPES--TGR 86 (156)
T ss_dssp EEEECSSSSCSS--CCC
T ss_pred cceeecccCCcc--cCc
Confidence 567899999995 454
No 7
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=5.35 E-value=1.6e+02 Score=23.35 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=14.3
Q ss_pred cCCcccCCCccccC--CCchH
Q psy15882 96 RFPECFFTGKVDYI--GSSHQ 114 (149)
Q Consensus 96 riPEr~~PG~FD~~--g~SHq 114 (149)
.++...+|..+|++ ||.|.
T Consensus 193 ~v~~~~~~~~~dyvalGH~H~ 213 (379)
T 3tho_B 193 IINRALIPSVVDYAALGHIHS 213 (379)
T ss_dssp CBCGGGSCTTSSEEEEESCSS
T ss_pred ccCHHHcCcCCCEEEcccccC
Confidence 35666778889997 88774
No 8
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A
Probab=5.05 E-value=1.9e+02 Score=25.27 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=11.8
Q ss_pred cCCCccccCCCchH
Q psy15882 101 FFTGKVDYIGSSHQ 114 (149)
Q Consensus 101 ~~PG~FD~~g~SHq 114 (149)
+++|+||.||..|.
T Consensus 239 f~~Gwfd~WG~~~~ 252 (595)
T 4e8d_A 239 FWDGWFNRWKEPII 252 (595)
T ss_dssp EECSCCCBTTSCCC
T ss_pred eccccccccCCCCC
Confidence 56899999998873
No 9
>3msq_A Putative ubiquinone biosynthesis protein; COQ4 superfamily, structural genomics, joint center for STRU genomics, JCSG; 2.85A {Nostoc punctiforme}
Probab=5.04 E-value=2.2e+02 Score=21.37 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=10.0
Q ss_pred CchHHHHHHHHHH
Q psy15882 111 SSHQWWHFFVVLA 123 (149)
Q Consensus 111 ~SHqi~Hi~v~~g 123 (149)
..|++||++.-.+
T Consensus 124 e~HD~~HvLtG~~ 136 (224)
T 3msq_A 124 STHDIYHVVAGFD 136 (224)
T ss_dssp HHHHHHHHHHTCC
T ss_pred cchhhhhhccCCC
Confidence 5899999986444
No 10
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A*
Probab=4.88 E-value=1.9e+02 Score=25.52 Aligned_cols=14 Identities=43% Similarity=0.800 Sum_probs=11.5
Q ss_pred cCCCccccCCCchH
Q psy15882 101 FFTGKVDYIGSSHQ 114 (149)
Q Consensus 101 ~~PG~FD~~g~SHq 114 (149)
+++|+||.||..|+
T Consensus 246 f~~Gwfd~WG~~~~ 259 (654)
T 3thd_A 246 FYTGWLDHWGQPHS 259 (654)
T ss_dssp EESSCCCCTTSCCC
T ss_pred cccccCCcCCCCCC
Confidence 45799999998873
Done!