Query psy15882
Match_columns 149
No_of_seqs 135 out of 952
Neff 6.9
Searched_HMMs 13730
Date Sat Aug 17 00:02:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15882.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15882hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tdja2 d.58.18.2 (A:336-423) 50.1 1.3 9.6E-05 27.6 -0.4 13 92-106 5-17 (88)
2 d1tdja3 d.58.18.2 (A:424-514) 35.0 2.5 0.00018 26.5 -0.9 13 92-106 12-24 (91)
3 d1bu2a2 a.74.1.1 (A:149-250) V 21.2 11 0.00079 23.1 0.3 14 91-104 11-24 (102)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 16.5 67 0.0049 15.9 3.1 16 80-95 11-26 (34)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 10.5 94 0.0068 14.3 2.6 12 84-95 6-17 (27)
6 d1t1ra3 c.2.1.3 (A:275-300) 1- 9.9 66 0.0048 15.1 1.4 15 91-105 5-19 (26)
7 d1sxjb2 c.37.1.20 (B:7-230) Re 6.7 76 0.0055 21.0 1.1 18 99-116 7-25 (224)
8 d1iqpa2 c.37.1.20 (A:2-232) Re 6.6 70 0.0051 21.2 0.8 18 97-114 14-32 (231)
9 d1sxjc2 c.37.1.20 (C:12-238) R 6.1 76 0.0055 20.9 0.8 22 97-118 4-26 (227)
10 d1ncwh1 b.1.1.1 (H:1-113) Immu 5.0 89 0.0064 19.8 0.5 13 100-112 100-112 (119)
No 1
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=50.07 E-value=1.3 Score=27.64 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=10.4
Q ss_pred HHhhcCCcccCCCcc
Q psy15882 92 IYITRFPECFFTGKV 106 (149)
Q Consensus 92 ~Y~~riPEr~~PG~F 106 (149)
+++..|||| ||.|
T Consensus 5 l~~v~iPEr--pGaf 17 (88)
T d1tdja2 5 LLAVTIPEE--KGSF 17 (88)
T ss_dssp EEEEECCBS--SSCS
T ss_pred EEEEEcCCC--ccHH
Confidence 467889996 9986
No 2
>d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.99 E-value=2.5 Score=26.50 Aligned_cols=13 Identities=38% Similarity=0.856 Sum_probs=10.2
Q ss_pred HHhhcCCcccCCCcc
Q psy15882 92 IYITRFPECFFTGKV 106 (149)
Q Consensus 92 ~Y~~riPEr~~PG~F 106 (149)
+|+..|||| ||.|
T Consensus 12 l~~v~iPEr--pGal 24 (91)
T d1tdja3 12 LYSFEFPES--PGAL 24 (91)
T ss_dssp EEEEECCCC--TTHH
T ss_pred EEEEECCCC--ccHH
Confidence 577789996 9864
No 3
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=21.19 E-value=11 Score=23.12 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=11.8
Q ss_pred HHHhhcCCcccCCC
Q psy15882 91 LIYITRFPECFFTG 104 (149)
Q Consensus 91 ~~Y~~riPEr~~PG 104 (149)
+..+.|+||.+||.
T Consensus 11 ~c~alkipe~~wpq 24 (102)
T d1bu2a2 11 LCNALKIPEDLWPQ 24 (102)
T ss_dssp HHHHTTCCTTSHHH
T ss_pred hhhhccCcHHHhHH
Confidence 46789999999983
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.49 E-value=67 Score=15.87 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhh
Q psy15882 80 MGMYGISGLAFLIYIT 95 (149)
Q Consensus 80 ~~~~~~y~~G~~~Y~~ 95 (149)
...+++-.+|.+||.+
T Consensus 11 ~G~~vi~~vG~FfYGs 26 (34)
T d2axtj1 11 AGMGVIVIVGLFFYGA 26 (34)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhhhhHhheeeeeeee
Confidence 4456667778999974
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.54 E-value=94 Score=14.31 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhh
Q psy15882 84 GISGLAFLIYIT 95 (149)
Q Consensus 84 ~~y~~G~~~Y~~ 95 (149)
+.-.+|..||+.
T Consensus 6 i~~tl~glf~aa 17 (27)
T d2e74g1 6 VFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 334445556653
No 6
>d1t1ra3 c.2.1.3 (A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}
Probab=9.93 E-value=66 Score=15.06 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=11.1
Q ss_pred HHHhhcCCcccCCCc
Q psy15882 91 LIYITRFPECFFTGK 105 (149)
Q Consensus 91 ~~Y~~riPEr~~PG~ 105 (149)
+-|+.-+|||.--|.
T Consensus 5 IA~aLa~PeRi~sgv 19 (26)
T d1t1ra3 5 IAHTMAWPNRVNSGV 19 (26)
T ss_dssp HHHHHHTTSCCCCCC
T ss_pred hhhhccCccccccCC
Confidence 457777899987663
No 7
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.73 E-value=76 Score=20.96 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=12.8
Q ss_pred cccCCCcc-ccCCCchHHH
Q psy15882 99 ECFFTGKV-DYIGSSHQWW 116 (149)
Q Consensus 99 Er~~PG~F-D~~g~SHqi~ 116 (149)
|++.|.+| |++||.+.+=
T Consensus 7 eKyrP~~~~d~ig~~~~~~ 25 (224)
T d1sxjb2 7 EKYRPQVLSDIVGNKETID 25 (224)
T ss_dssp HHTCCSSGGGCCSCTHHHH
T ss_pred hHhCCCCHHHhcCCHHHHH
Confidence 78888775 5678876553
No 8
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=6.56 E-value=70 Score=21.18 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=12.7
Q ss_pred CCcccCCCcc-ccCCCchH
Q psy15882 97 FPECFFTGKV-DYIGSSHQ 114 (149)
Q Consensus 97 iPEr~~PG~F-D~~g~SHq 114 (149)
+-||+.|.+| |++|+.+.
T Consensus 14 w~~ky~P~~~~diig~~~~ 32 (231)
T d1iqpa2 14 WVEKYRPQRLDDIVGQEHI 32 (231)
T ss_dssp HHHHTCCCSTTTCCSCHHH
T ss_pred HHHHhCCCCHHHccCcHHH
Confidence 3478889887 66787644
No 9
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.11 E-value=76 Score=20.88 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=15.1
Q ss_pred CCcccCCCcc-ccCCCchHHHHH
Q psy15882 97 FPECFFTGKV-DYIGSSHQWWHF 118 (149)
Q Consensus 97 iPEr~~PG~F-D~~g~SHqi~Hi 118 (149)
+-|++.|.+| |++|+.+.+=.+
T Consensus 4 w~ekyrP~~~~divg~~~~~~~L 26 (227)
T d1sxjc2 4 WVEKYRPETLDEVYGQNEVITTV 26 (227)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHH
T ss_pred hhhhhCCCCHHHccCcHHHHHHH
Confidence 3478888876 577887765444
No 10
>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}
Probab=5.05 E-value=89 Score=19.76 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=0.0
Q ss_pred ccCCCccccCCCc
Q psy15882 100 CFFTGKVDYIGSS 112 (149)
Q Consensus 100 r~~PG~FD~~g~S 112 (149)
+..++.||+||+.
T Consensus 100 ~~~~~~~d~WGqG 112 (119)
T d1ncwh1 100 LWYDGGAGSWGQG 112 (119)
T ss_dssp ETTTSCSCEECCC
T ss_pred cccCCCCcccCCC
Done!