RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15882
         (149 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.6 bits (71), Expect = 0.090
 Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 47/131 (35%)

Query: 11  EWQNFYLATVFAI----FIACMILQI-PRLNIHPDIKMLVFVCWAAYGVVPTVHWAVIMG 65
            W++F+++   AI    FI     +  P  ++ P I   +         VP+        
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI---LEDSLENNEGVPS-------- 336

Query: 66  GWDNPIVNMLLPRVMGMYGISGL--AFLI-YITRFPECFFTGKVDYI----GSSHQWWHF 118
               P   ML         IS L    +  Y+ +       GK   I    G+ +     
Sbjct: 337 ----P---ML--------SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN----- 376

Query: 119 FVV----LALY 125
            VV     +LY
Sbjct: 377 LVVSGPPQSLY 387


>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT
           structural genomics, JCSG, protein structure initiative,
           PS unknown function; HET: UNL; 2.46A {Pseudomonas
           aeruginosa} SCOP: b.41.1.4 b.43.3.4
          Length = 187

 Score = 27.6 bits (62), Expect = 1.5
 Identities = 6/44 (13%), Positives = 16/44 (36%)

Query: 78  RVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVV 121
           +++ +YGI G   +   T   +     +   +    +     +V
Sbjct: 25  KIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELV 68


>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2,
           protein structure initiative, northeast structural
           genomics consortium, NESG; 2.70A {Haemophilus
           influenzae}
          Length = 177

 Score = 27.2 bits (61), Expect = 1.7
 Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 69  NPIVNMLLPRVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQW 115
           +  V   + ++   YGI G   +   T   E  F  +  ++    +W
Sbjct: 1   HIEV---VGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEW 44


>3npg_A Uncharacterized DUF364 family protein; protein with unknown
           function from DUF364 family, structural genomics; 2.70A
           {Pyrococcus horikoshii}
          Length = 249

 Score = 26.9 bits (59), Expect = 2.5
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 45  VFVCWAAYGVVPTVHWAVIMGGWDNPIVNMLLPRVMGMYGISGLAFLIYITR--FPECFF 102
            +     Y ++P V   +      + IVN  L  ++     + L  +   T    PE   
Sbjct: 152 TYSDTLEYHILPEVDGIIASA---SCIVNGTLDMILDRAKKAKLIVITGPTGQLLPEFLK 208

Query: 103 TGKVDYIGSSH 113
             KV ++ S  
Sbjct: 209 GTKVTHLASMK 219


>3p09_A Beta-lactamase; structural genomics, center for structural genomics
           of infec diseases, csgid, alpha-beta sandwich, cytosol;
           HET: MSE; 1.90A {Francisella tularensis subsp}
          Length = 290

 Score = 25.3 bits (55), Expect = 8.9
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 13/84 (15%)

Query: 15  FYLATVFAIFIACMIL-QIPRLNIHPDIKMLV-----------FVCWAAYGVVPTVHWAV 62
           F + +VF   +   IL          D K+ +            +     G   T+    
Sbjct: 60  FPICSVFKFLLVGAILDYDMHNQGFLDKKIPINQDDIGKLGYAPITAKNVGKTLTISQLN 119

Query: 63  IMGGW-DNPIVNMLLPRVMGMYGI 85
                 D+P  N+L+  + G+  +
Sbjct: 120 YAAILSDSPASNILVRELGGLQNL 143


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.334    0.145    0.522 

Gapped
Lambda     K      H
   0.267   0.0463    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,567,932
Number of extensions: 146160
Number of successful extensions: 528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 22
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.8 bits)