RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15882
         (149 letters)



>d2f1la2 b.43.3.4 (A:7-95) 16S rRNA processing protein RimM,
           N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 89

 Score = 28.0 bits (62), Expect = 0.17
 Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 2/72 (2%)

Query: 78  RVMGMYGISGLAFLIYITRFPECFFTGKVDYIGSSHQWWHFFVVLALYYWHNTGIKYIEY 137
           +++ +YGI G   +   T   +     +   +    +     +V    +      K    
Sbjct: 7   KIVSVYGIRGEVKVYSFTDPLDNLLDYRRWTLRRDGEIRQAELVRGRLHGKVLAAKLKGL 66

Query: 138 RMRYMTHANKLR 149
             R    A    
Sbjct: 67  DDR--EEARTFT 76


>d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid
           herpesvirus 4, MuHV-4 [TaxId: 33708]}
          Length = 371

 Score = 25.4 bits (55), Expect = 3.6
 Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 19/69 (27%)

Query: 2   SQYCHQD-CQE---WQNFYLATVFAIFIACMILQIPRLNIHPDIKMLVFVCWAAYGV--V 55
           S++C  D C      +              M L  P        KM    C+  Y V  +
Sbjct: 216 SKFCEVDGCTAETGMEK-------------MSLLTPFGGPPQQAKMNTCPCYYKYSVSPL 262

Query: 56  PTVHWAVIM 64
           P +   ++ 
Sbjct: 263 PAMDHLILA 271


>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase
           IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 24.6 bits (53), Expect = 6.9
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 73  NMLLPRVMGMYGISGLAFLIYITRFPECFFTGKV-----DYIGSSH 113
           N LLP+ +GMY ++      Y+      F          D  GS+ 
Sbjct: 144 NTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLTVHRKYDLKGSTV 189


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.145    0.522 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 680,969
Number of extensions: 31034
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 14
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 49 (23.0 bits)