BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15887
(104 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O18400|PITX_DROME Pituitary homeobox homolog Ptx1 OS=Drosophila melanogaster GN=Ptx1
PE=2 SV=2
Length = 509
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 57/75 (76%), Gaps = 2/75 (2%)
Query: 17 IKTELSNHNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDM 76
IKTE N + S D S KN K +KRQRRQRTHFTSQQLQELE TF+RNRYPDM
Sbjct: 234 IKTE--NISSSGHDEPMTTSGEEPKNDKKNKRQRRQRTHFTSQQLQELEHTFSRNRYPDM 291
Query: 77 STREEIAMWTNLTEA 91
STREEIAMWTNLTEA
Sbjct: 292 STREEIAMWTNLTEA 306
>sp|Q9PWR3|PITX2_XENLA Pituitary homeobox 2 OS=Xenopus laevis GN=pitx2 PE=2 SV=1
Length = 326
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 62/87 (71%), Gaps = 10/87 (11%)
Query: 15 GNIKTELSNH---NDSIEDSSAKDSSSNSKNTKNS-------KRQRRQRTHFTSQQLQEL 64
G K+ L H + S D++ KD S +KN +S KRQRRQRTHFTSQQLQEL
Sbjct: 50 GECKSRLEVHTISDTSSPDTADKDKSHQTKNEDSSTDDPSKKKRQRRQRTHFTSQQLQEL 109
Query: 65 EATFARNRYPDMSTREEIAMWTNLTEA 91
EATF RNRYPDMSTREEIA+WTNLTEA
Sbjct: 110 EATFQRNRYPDMSTREEIAVWTNLTEA 136
>sp|O35160|PITX3_MOUSE Pituitary homeobox 3 OS=Mus musculus GN=Pitx3 PE=1 SV=1
Length = 302
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 24 HNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIA 83
H+DS E +SA + ++ K+QRRQRTHFTSQQLQELEATF RNRYPDMSTREEIA
Sbjct: 38 HSDS-EKASASLPGGSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIA 96
Query: 84 MWTNLTEA 91
+WTNLTEA
Sbjct: 97 VWTNLTEA 104
>sp|P81062|PITX3_RAT Pituitary homeobox 3 OS=Rattus norvegicus GN=Pitx3 PE=1 SV=2
Length = 302
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 24 HNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIA 83
H+DS E +SA + ++ K+QRRQRTHFTSQQLQELEATF RNRYPDMSTREEIA
Sbjct: 38 HSDS-EKASASLPGGSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIA 96
Query: 84 MWTNLTEA 91
+WTNLTEA
Sbjct: 97 VWTNLTEA 104
>sp|O75364|PITX3_HUMAN Pituitary homeobox 3 OS=Homo sapiens GN=PITX3 PE=1 SV=1
Length = 302
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 24 HNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIA 83
H+DS E +SA + ++ K+QRRQRTHFTSQQLQELEATF RNRYPDMSTREEIA
Sbjct: 38 HSDS-EKASASLPGGSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIA 96
Query: 84 MWTNLTEA 91
+WTNLTEA
Sbjct: 97 VWTNLTEA 104
>sp|Q9W5Z2|PITX2_DANRE Pituitary homeobox 2 OS=Danio rerio GN=pitx2 PE=2 SV=1
Length = 314
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/63 (76%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Query: 29 EDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNL 88
E +K+ SN +K KRQRRQRTHFTSQQLQELEATF RNRYPDMSTREEIA+WTNL
Sbjct: 63 EKGQSKNEDSNDDPSKK-KRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNL 121
Query: 89 TEA 91
TEA
Sbjct: 122 TEA 124
>sp|O93385|PITX2_CHICK Pituitary homeobox 2 OS=Gallus gallus GN=PITX2 PE=2 SV=1
Length = 333
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 50/63 (79%), Gaps = 7/63 (11%)
Query: 29 EDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNL 88
ED+ +D S KRQRRQRTHFTSQQLQELEATF RNRYPDMSTREEIA+WTNL
Sbjct: 88 EDAGPEDPSKK-------KRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNL 140
Query: 89 TEA 91
TEA
Sbjct: 141 TEA 143
>sp|Q9I8K3|PITX3_XENLA Pituitary homeobox 3 OS=Xenopus laevis GN=pitx3 PE=2 SV=1
Length = 292
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 54/68 (79%)
Query: 24 HNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIA 83
H+D+ + + SN ++ K+QRRQRTHFTSQQLQELEATF RNRYPDMSTREEIA
Sbjct: 35 HSDTEKSQQNQTDDSNPEDGILKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIA 94
Query: 84 MWTNLTEA 91
+WTNLTEA
Sbjct: 95 VWTNLTEA 102
>sp|Q6QU75|PITX3_DANRE Pituitary homeobox 3 OS=Danio rerio GN=pitx3 PE=2 SV=1
Length = 293
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 56/76 (73%), Gaps = 8/76 (10%)
Query: 16 NIKTELSNHNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPD 75
N TE S+ N + E SN ++ K+QRRQRTHFTSQQLQELEATF RNRYPD
Sbjct: 35 NSDTEKSHQNHTDE--------SNPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPD 86
Query: 76 MSTREEIAMWTNLTEA 91
MSTREEIA+WTNLTEA
Sbjct: 87 MSTREEIAVWTNLTEA 102
>sp|Q9W751|PITX1_XENLA Pituitary homeobox 1 OS=Xenopus laevis GN=pitx1 PE=2 SV=1
Length = 305
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/58 (74%), Positives = 46/58 (79%)
Query: 34 KDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
K N + K+QRRQRTHFTSQQLQELEATF RNRYPDMS REEIA+WTNLTEA
Sbjct: 63 KGEDGNGDDPSKKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEA 120
>sp|Q99697|PITX2_HUMAN Pituitary homeobox 2 OS=Homo sapiens GN=PITX2 PE=1 SV=2
Length = 317
Score = 90.1 bits (222), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/67 (67%), Positives = 52/67 (77%)
Query: 25 NDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAM 84
N+ + K+ +++ KRQRRQRTHFTSQQLQELEATF RNRYPDMSTREEIA+
Sbjct: 61 NEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAV 120
Query: 85 WTNLTEA 91
WTNLTEA
Sbjct: 121 WTNLTEA 127
>sp|P97474|PITX2_MOUSE Pituitary homeobox 2 OS=Mus musculus GN=Pitx2 PE=1 SV=2
Length = 317
Score = 89.7 bits (221), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/67 (67%), Positives = 52/67 (77%)
Query: 25 NDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAM 84
N+ + K+ +++ KRQRRQRTHFTSQQLQELEATF RNRYPDMSTREEIA+
Sbjct: 61 NEKDKGQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAV 120
Query: 85 WTNLTEA 91
WTNLTEA
Sbjct: 121 WTNLTEA 127
>sp|P78337|PITX1_HUMAN Pituitary homeobox 1 OS=Homo sapiens GN=PITX1 PE=1 SV=2
Length = 314
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/44 (90%), Positives = 42/44 (95%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
K+QRRQRTHFTSQQLQELEATF RNRYPDMS REEIA+WTNLTE
Sbjct: 87 KKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTE 130
>sp|P70314|PITX1_MOUSE Pituitary homeobox 1 OS=Mus musculus GN=Pitx1 PE=2 SV=2
Length = 315
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/44 (90%), Positives = 42/44 (95%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
K+QRRQRTHFTSQQLQELEATF RNRYPDMS REEIA+WTNLTE
Sbjct: 88 KKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTE 131
>sp|Q99NA7|PITX1_RAT Pituitary homeobox 1 OS=Rattus norvegicus GN=Pitx1 PE=2 SV=1
Length = 315
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/44 (90%), Positives = 42/44 (95%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
K+QRRQRTHFTSQQLQELEATF RNRYPDMS REEIA+WTNLTE
Sbjct: 87 KKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTE 130
>sp|P56673|PITX1_CHICK Pituitary homeobox 1 OS=Gallus gallus GN=PITX1 PE=2 SV=1
Length = 311
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/44 (90%), Positives = 42/44 (95%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
K+QRRQRTHFTSQQLQELEATF RNRYPDMS REEIA+WTNLTE
Sbjct: 86 KKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTE 129
>sp|Q9R0W1|PITX2_RAT Pituitary homeobox 2 OS=Rattus norvegicus GN=Pitx2 PE=2 SV=1
Length = 324
Score = 89.0 bits (219), Expect = 7e-18, Method: Composition-based stats.
Identities = 44/59 (74%), Positives = 49/59 (83%)
Query: 33 AKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
K+ +++ KRQRRQRTHFTSQQLQELEATF RNRYPDMSTREEIA+WTNLTEA
Sbjct: 76 GKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEA 134
>sp|P52906|UNC30_CAEEL Homeobox protein unc-30 OS=Caenorhabditis elegans GN=unc-30 PE=2
SV=2
Length = 323
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 25 NDSIEDSSAKDSSSN-SKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIA 83
++ ++ SS DS+ N S N ++ RRQRTHFTS QL ELE F+RNRYPDM+ REEIA
Sbjct: 87 DNHLDTSSPTDSTGNGSTNGGKIQKPRRQRTHFTSHQLTELENWFSRNRYPDMACREEIA 146
Query: 84 MWTNLTE 90
+W +LTE
Sbjct: 147 VWISLTE 153
>sp|Q9U637|PITX_BRABE Pituitary homeobox x OS=Branchiostoma belcheri GN=Ptx PE=2 SV=1
Length = 331
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/38 (92%), Positives = 37/38 (97%)
Query: 54 THFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
THFTSQQLQELEA+FARNRYPDM+TREEIA WTNLTEA
Sbjct: 110 THFTSQQLQELEASFARNRYPDMATREEIAAWTNLTEA 147
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 18 KTELSNHNDS----IEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRY 73
K E S HND EDS + S+S+ ++QRR RT FTS QL+ELE F + Y
Sbjct: 180 KDEESLHNDGDVKDGEDSVCLSAGSDSEEGMLKRKQRRYRTTFTSYQLEELERAFQKTHY 239
Query: 74 PDMSTREEIAMWTNLTEA 91
PD+ TREE+AM +LTEA
Sbjct: 240 PDVFTREELAMRLDLTEA 257
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 3 ERGRILPIEPLIGNIKTELSNHNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQ 62
E G + P E L+ + E + D EDS + S+S+ ++QRR RT FTS QL+
Sbjct: 285 EGGELSPKEELL--LHPEDAEGKDG-EDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLE 341
Query: 63 ELEATFARNRYPDMSTREEIAMWTNLTEA 91
ELE F + YPD+ TREE+AM +LTEA
Sbjct: 342 ELERAFQKTHYPDVFTREELAMRLDLTEA 370
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 3 ERGRILPIEPLIGNIKTELSNHNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQ 62
E G + P E L+ + E + D EDS + S+S+ ++QRR RT FTS QL+
Sbjct: 289 EGGELSPKEELL--LHPEDAEGKDG-EDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLE 345
Query: 63 ELEATFARNRYPDMSTREEIAMWTNLTEA 91
ELE F + YPD+ TREE+AM +LTEA
Sbjct: 346 ELERAFQKTHYPDVFTREELAMRLDLTEA 374
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 35/45 (77%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FT QQL+ LEA FA+ YPD+ TREE+AM NLTEA
Sbjct: 31 RKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEA 75
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 35/45 (77%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FT QQL+ LEA FA+ YPD+ TREE+AM NLTEA
Sbjct: 31 RKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEA 75
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 3 ERGRILPIEPLIGNIKTELSNHNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQ 62
E G + P E L+ + E + D EDS + S+S+ ++QRR RT FTS QL+
Sbjct: 287 EGGELSPKEELL--LHPEDAEGKDG-EDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLE 343
Query: 63 ELEATFARNRYPDMSTREEIAMWTNLTEA 91
ELE F + YPD+ TREE+AM +LTEA
Sbjct: 344 ELERAFQKTHYPDVFTREELAMRLDLTEA 372
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%)
Query: 37 SSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
SN+ + ++QRR RT FTS QL+ELE F + YPD+ TREE+AM +LTEA
Sbjct: 200 GSNAGDRPTKRKQRRYRTTFTSYQLEELERAFCKTHYPDVFTREELAMRVDLTEA 254
>sp|Q62798|DRGX_RAT Dorsal root ganglia homeobox protein OS=Rattus norvegicus GN=Drgx
PE=2 SV=1
Length = 263
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 34/45 (75%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT F QQL+ LEA FA+ YPD+ TREE+AM NLTEA
Sbjct: 31 RKQRRNRTTFALQQLEALEAVFAQTHYPDVFTREELAMKINLTEA 75
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FT++QL+ELE F R YPD+ TREE+A T LTEA
Sbjct: 215 RKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEA 259
>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
Length = 503
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FT++QL+ELE F R YPD+ TREE+A T LTEA
Sbjct: 213 RKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEA 257
>sp|Q566X8|DMX1B_DANRE Diencephalon/mesencephalon homeobox protein 1-B OS=Danio rerio
GN=dmbx1b PE=2 SV=1
Length = 369
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FT+QQL+ LE TF + YPD+ RE +AM TNL EA
Sbjct: 64 RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEA 108
>sp|Q91ZK4|DMBX1_MOUSE Diencephalon/mesencephalon homeobox protein 1 OS=Mus musculus
GN=Dmbx1 PE=1 SV=1
Length = 381
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FT+QQL+ LE TF + YPD+ RE +AM TNL EA
Sbjct: 69 RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEA 113
>sp|Q8JI10|DMX1A_DANRE Diencephalon/mesencephalon homeobox protein 1-A OS=Danio rerio
GN=dmbx1a PE=2 SV=1
Length = 388
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FT+QQL+ LE TF + YPD+ RE +AM TNL EA
Sbjct: 69 RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEA 113
>sp|Q8NFW5|DMBX1_HUMAN Diencephalon/mesencephalon homeobox protein 1 OS=Homo sapiens
GN=DMBX1 PE=1 SV=1
Length = 382
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FT+QQL+ LE TF + YPD+ RE +AM TNL EA
Sbjct: 69 RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEA 113
>sp|Q9XSK0|CRX_BOVIN Cone-rod homeobox protein OS=Bos taurus GN=CRX PE=2 SV=1
Length = 299
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR+RT FT QL+ELEA FA+ +YPD+ REE+A+ NL E+
Sbjct: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPES 81
>sp|Q8SQ03|CRX_CANFA Cone-rod homeobox protein OS=Canis familiaris GN=CRX PE=2 SV=1
Length = 299
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR+RT FT QL+ELEA FA+ +YPD+ REE+A+ NL E+
Sbjct: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPES 81
>sp|O43186|CRX_HUMAN Cone-rod homeobox protein OS=Homo sapiens GN=CRX PE=1 SV=1
Length = 299
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR+RT FT QL+ELEA FA+ +YPD+ REE+A+ NL E+
Sbjct: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPES 81
>sp|O54751|CRX_MOUSE Cone-rod homeobox protein OS=Mus musculus GN=Crx PE=2 SV=1
Length = 299
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR+RT FT QL+ELEA FA+ +YPD+ REE+A+ NL E+
Sbjct: 37 RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPES 81
>sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila melanogaster GN=prd PE=1
SV=1
Length = 613
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT F++ QL ELE F R +YPD+ TREE+A TNLTEA
Sbjct: 211 RKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEA 255
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FTS QL+ELE FA YPD+ TREE+A+ +LTEA
Sbjct: 96 RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEA 140
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FTS QL+ELE FA YPD+ TREE+A+ +LTEA
Sbjct: 96 RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEA 140
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 29 EDSSAKDSSS---NSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMW 85
+D ++ D S + + N ++RR RT FTS QL+ELE F + YPD+ RE++AM
Sbjct: 177 QDRASADLPSPMEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMR 236
Query: 86 TNLTEA 91
T+LTEA
Sbjct: 237 TDLTEA 242
>sp|P09083|GSBN_DROME Protein gooseberry-neuro OS=Drosophila melanogaster GN=gsb-n PE=1
SV=2
Length = 449
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FT++QL+ LE F+R +YPD+ TREE+A T LTEA
Sbjct: 180 RKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEA 224
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/45 (62%), Positives = 34/45 (75%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FTS QL+ELE F+R YPD+ TREE+AM LTEA
Sbjct: 83 RKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEA 127
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 44 KNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
KN ++RR RT F++ QL+ELE F + YPD+ RE++A+ T+LTEA
Sbjct: 148 KNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEA 195
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FTS QL+ELE FA YPD+ TREE+A+ +LTEA
Sbjct: 88 RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEA 132
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FTS QL+ELE FA YPD+ TREE+A+ +LTEA
Sbjct: 88 RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEA 132
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FTS QL+ELE FA YPD+ TREE+A+ +LTEA
Sbjct: 88 RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEA 132
>sp|Q9GMA3|VSX1_BOVIN Visual system homeobox 1 OS=Bos taurus GN=VSX1 PE=2 SV=1
Length = 365
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 27 SIEDSSAKDSSSNSKNTKNSKRQ-RRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMW 85
S EDS ++D S + SKR+ RR RT FT+ QL+ELE F+ YPD+ RE +AM
Sbjct: 141 SDEDSPSEDRSDRKASPAPSKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAMK 200
Query: 86 TNLTE 90
T L E
Sbjct: 201 TELPE 205
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 29 EDSSAKDSSS---NSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMW 85
+D ++ D S + + N ++RR RT FTS QL+ELE F + YPD+ RE++AM
Sbjct: 191 QDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMR 250
Query: 86 TNLTEA 91
T+LTEA
Sbjct: 251 TDLTEA 256
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++QRR RT FT++QL+ELE F R YPD+ TREE+A LTEA
Sbjct: 194 RKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEA 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.124 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,429,070
Number of Sequences: 539616
Number of extensions: 1091176
Number of successful extensions: 9445
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 8403
Number of HSP's gapped (non-prelim): 1082
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)