Query psy15887
Match_columns 104
No_of_seqs 106 out of 1106
Neff 8.4
Searched_HMMs 29240
Date Sat Aug 17 00:08:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wi3_A DNA-binding protein SAT 99.9 1.1E-22 3.9E-27 114.9 2.8 60 45-104 3-63 (71)
2 1wh5_A ZF-HD homeobox family p 99.8 1E-21 3.5E-26 115.6 5.3 56 45-100 13-72 (80)
3 1wh7_A ZF-HD homeobox family p 99.8 2.1E-21 7.3E-26 114.2 4.9 56 45-101 13-73 (80)
4 2dmt_A Homeobox protein BARH-l 99.8 4.2E-21 1.4E-25 112.8 5.2 57 44-100 12-68 (80)
5 2kt0_A Nanog, homeobox protein 99.8 1E-20 3.5E-25 112.0 6.0 57 44-100 17-73 (84)
6 2da3_A Alpha-fetoprotein enhan 99.8 9.7E-21 3.3E-25 111.1 3.5 56 45-100 13-68 (80)
7 2cra_A Homeobox protein HOX-B1 99.8 1.7E-20 5.7E-25 107.7 4.1 55 46-100 4-58 (70)
8 2djn_A Homeobox protein DLX-5; 99.8 2.6E-20 9E-25 106.8 4.0 55 46-100 4-58 (70)
9 2da2_A Alpha-fetoprotein enhan 99.8 3.5E-20 1.2E-24 106.2 4.2 56 45-100 3-58 (70)
10 2dmu_A Homeobox protein goosec 99.8 3.3E-20 1.1E-24 106.4 3.9 55 46-100 4-58 (70)
11 1nk2_P Homeobox protein VND; h 99.8 4.8E-20 1.6E-24 107.6 4.4 56 45-100 5-60 (77)
12 2da1_A Alpha-fetoprotein enhan 99.8 3.2E-20 1.1E-24 106.4 2.7 55 46-100 4-58 (70)
13 2cue_A Paired box protein PAX6 99.8 6.8E-20 2.3E-24 107.6 4.2 55 46-100 4-58 (80)
14 2dms_A Homeobox protein OTX2; 99.8 6.9E-20 2.4E-24 107.6 4.1 55 46-100 4-58 (80)
15 2e1o_A Homeobox protein PRH; D 99.8 9.5E-20 3.3E-24 104.5 4.1 54 47-100 5-58 (70)
16 2dmq_A LIM/homeobox protein LH 99.8 9.3E-20 3.2E-24 107.0 4.1 55 46-100 4-58 (80)
17 2h1k_A IPF-1, pancreatic and d 99.8 5.2E-20 1.8E-24 103.6 2.9 53 48-100 2-54 (63)
18 2hdd_A Protein (engrailed home 99.8 4.5E-20 1.6E-24 103.2 2.6 53 48-100 2-54 (61)
19 1puf_A HOX-1.7, homeobox prote 99.8 1.3E-19 4.4E-24 105.7 4.5 55 46-100 10-64 (77)
20 2vi6_A Homeobox protein nanog; 99.8 4.7E-20 1.6E-24 103.4 2.5 53 48-100 2-54 (62)
21 1ig7_A Homeotic protein MSX-1; 99.8 1E-19 3.5E-24 100.7 3.4 51 50-100 1-51 (58)
22 1fjl_A Paired protein; DNA-bin 99.8 9.3E-20 3.2E-24 107.3 3.3 55 46-100 15-69 (81)
23 1bw5_A ISL-1HD, insulin gene e 99.8 1E-19 3.5E-24 103.2 3.2 53 48-100 2-54 (66)
24 3rkq_A Homeobox protein NKX-2. 99.8 1.2E-19 4.3E-24 100.2 3.4 52 49-100 2-53 (58)
25 3a01_A Homeodomain-containing 99.8 2.2E-19 7.4E-24 108.3 4.5 56 45-100 13-68 (93)
26 1zq3_P PRD-4, homeotic bicoid 99.8 1.3E-19 4.5E-24 103.4 3.2 52 49-100 2-53 (68)
27 2l7z_A Homeobox protein HOX-A1 99.8 2.1E-19 7.3E-24 103.8 4.1 55 46-100 4-58 (73)
28 2da4_A Hypothetical protein DK 99.8 7.6E-20 2.6E-24 107.4 1.8 55 46-100 5-63 (80)
29 1akh_A Protein (mating-type pr 99.8 9.9E-20 3.4E-24 101.7 2.2 54 47-100 3-56 (61)
30 2m0c_A Homeobox protein arista 99.8 2.6E-19 8.7E-24 103.7 3.9 55 46-100 6-60 (75)
31 1jgg_A Segmentation protein EV 99.8 1.9E-19 6.5E-24 100.3 2.9 51 50-100 2-52 (60)
32 1ahd_P Antennapedia protein mu 99.8 1.3E-19 4.4E-24 103.4 2.0 52 49-100 2-53 (68)
33 3nar_A ZHX1, zinc fingers and 99.8 2.1E-19 7.3E-24 108.8 2.8 56 45-100 21-76 (96)
34 1ftt_A TTF-1 HD, thyroid trans 99.8 2.7E-19 9.2E-24 102.1 3.1 52 49-100 2-53 (68)
35 2r5y_A Homeotic protein sex co 99.8 3.5E-19 1.2E-23 106.3 3.6 55 46-100 25-79 (88)
36 1yz8_P Pituitary homeobox 2; D 99.8 1.2E-19 4E-24 103.6 1.0 53 48-100 2-54 (68)
37 1b8i_A Ultrabithorax, protein 99.8 2.8E-19 9.7E-24 105.2 2.6 55 46-100 17-71 (81)
38 2k40_A Homeobox expressed in E 99.7 6.4E-19 2.2E-23 100.2 3.2 52 49-100 1-52 (67)
39 2ecc_A Homeobox and leucine zi 99.7 7.7E-19 2.6E-23 102.0 3.2 50 51-100 5-54 (76)
40 1b72_A Protein (homeobox prote 99.7 7.6E-19 2.6E-23 106.6 3.0 54 47-100 32-85 (97)
41 1x2n_A Homeobox protein pknox1 99.7 1.8E-18 6.2E-23 99.8 3.9 55 46-100 4-61 (73)
42 2dn0_A Zinc fingers and homeob 99.7 1.6E-18 5.4E-23 100.8 3.3 52 49-100 8-59 (76)
43 2ly9_A Zinc fingers and homeob 99.7 1.8E-18 6E-23 100.1 3.4 52 49-100 6-57 (74)
44 2da5_A Zinc fingers and homeob 99.7 2.5E-18 8.7E-23 99.8 3.8 50 51-100 9-58 (75)
45 2hi3_A Homeodomain-only protei 99.7 1.8E-18 6.3E-23 99.9 3.2 52 49-100 2-54 (73)
46 3a02_A Homeobox protein arista 99.7 1.3E-18 4.3E-23 97.0 2.3 49 52-100 2-50 (60)
47 1uhs_A HOP, homeodomain only p 99.7 2.5E-18 8.5E-23 99.0 3.2 51 50-100 2-53 (72)
48 1e3o_C Octamer-binding transcr 99.7 1.8E-18 6.3E-23 113.3 2.9 55 46-100 98-152 (160)
49 2cuf_A FLJ21616 protein; homeo 99.7 3.2E-18 1.1E-22 103.4 3.1 55 46-100 4-73 (95)
50 3a03_A T-cell leukemia homeobo 99.7 3.2E-18 1.1E-22 94.1 2.2 47 54-100 2-48 (56)
51 1du6_A PBX1, homeobox protein 99.7 3.7E-18 1.3E-22 96.1 2.4 54 48-101 2-58 (64)
52 1puf_B PRE-B-cell leukemia tra 99.7 6.3E-18 2.2E-22 97.5 3.3 52 49-100 1-55 (73)
53 2dmn_A Homeobox protein TGIF2L 99.7 9.5E-18 3.2E-22 99.1 3.9 55 46-100 4-61 (83)
54 1au7_A Protein PIT-1, GHF-1; c 99.7 6.9E-18 2.4E-22 109.2 3.3 55 46-100 84-138 (146)
55 1lfb_A Liver transcription fac 99.7 8.8E-18 3E-22 102.2 2.7 55 46-100 6-81 (99)
56 2da6_A Hepatocyte nuclear fact 99.7 1.7E-17 5.9E-22 101.1 3.8 55 46-100 3-78 (102)
57 2ecb_A Zinc fingers and homeob 99.7 2.4E-17 8.1E-22 98.5 4.2 46 55-100 17-62 (89)
58 1mnm_C Protein (MAT alpha-2 tr 99.7 8.6E-18 3E-22 100.0 2.2 54 47-100 25-81 (87)
59 3d1n_I POU domain, class 6, tr 99.7 1.9E-17 6.5E-22 107.6 3.8 55 46-100 90-144 (151)
60 2xsd_C POU domain, class 3, tr 99.7 6.4E-18 2.2E-22 111.2 1.5 55 46-100 96-150 (164)
61 1b72_B Protein (PBX1); homeodo 99.7 1.8E-17 6.1E-22 98.5 3.1 52 49-100 1-55 (87)
62 2cqx_A LAG1 longevity assuranc 99.7 7.9E-18 2.7E-22 97.0 1.1 51 50-100 9-60 (72)
63 2dmp_A Zinc fingers and homeob 99.7 5.8E-17 2E-21 96.9 4.5 46 55-100 19-64 (89)
64 1k61_A Mating-type protein alp 99.7 2.8E-17 9.5E-22 91.4 2.9 49 52-100 1-52 (60)
65 3l1p_A POU domain, class 5, tr 99.7 4.6E-17 1.6E-21 106.2 3.4 54 47-100 94-147 (155)
66 1le8_B Mating-type protein alp 99.6 5.4E-17 1.8E-21 95.8 2.9 51 50-100 3-56 (83)
67 2d5v_A Hepatocyte nuclear fact 99.6 4.9E-17 1.7E-21 106.8 2.8 55 46-100 94-148 (164)
68 2e19_A Transcription factor 8; 99.6 6.3E-17 2.2E-21 91.3 2.8 47 54-100 8-54 (64)
69 3nau_A Zinc fingers and homeob 99.6 4.5E-17 1.5E-21 91.8 1.9 44 57-100 12-55 (66)
70 2l9r_A Homeobox protein NKX-3. 99.6 1.9E-16 6.6E-21 90.5 2.8 47 54-100 9-55 (69)
71 1x2m_A LAG1 longevity assuranc 99.6 2.3E-16 7.9E-21 88.8 1.6 42 59-100 10-52 (64)
72 1ic8_A Hepatocyte nuclear fact 99.6 3.7E-16 1.3E-20 105.2 0.1 56 45-100 111-187 (194)
73 2h8r_A Hepatocyte nuclear fact 99.5 3.3E-15 1.1E-19 101.9 2.5 57 44-100 137-214 (221)
74 3k2a_A Homeobox protein MEIS2; 99.5 6.6E-15 2.3E-19 83.6 2.3 46 55-100 4-52 (67)
75 2da7_A Zinc finger homeobox pr 99.5 7.7E-15 2.6E-19 83.3 1.7 43 58-100 14-56 (71)
76 1mh3_A Maltose binding-A1 home 99.3 1.2E-12 3.9E-17 95.1 1.8 52 50-101 366-417 (421)
77 2lk2_A Homeobox protein TGIF1; 99.3 1.6E-12 5.4E-17 77.3 2.0 47 54-100 10-59 (89)
78 2nzz_A Penetratin conjugated G 97.7 3.4E-06 1.2E-10 42.0 -0.5 10 91-100 1-10 (37)
79 2ys9_A Homeobox and leucine zi 95.6 0.0033 1.1E-07 35.2 0.9 36 62-97 19-54 (70)
80 2elh_A CG11849-PA, LD40883P; s 89.1 0.17 5.7E-06 28.9 1.5 47 50-101 17-63 (87)
81 2rgt_A Fusion of LIM/homeobox 88.2 0.0037 1.3E-07 40.3 -6.7 30 47-76 134-163 (169)
82 1tc3_C Protein (TC3 transposas 83.9 0.52 1.8E-05 22.8 1.6 42 55-101 5-46 (51)
83 2glo_A Brinker CG9653-PA; prot 82.8 0.76 2.6E-05 24.0 2.0 48 53-101 3-50 (59)
84 4gek_A TRNA (CMO5U34)-methyltr 82.7 0.86 2.9E-05 31.0 2.7 24 77-102 226-249 (261)
85 2jn6_A Protein CGL2762, transp 74.4 1.4 4.9E-05 25.1 1.6 45 53-101 3-48 (97)
86 1hlv_A CENP-B, major centromer 71.4 2.7 9.4E-05 25.0 2.4 46 52-100 4-49 (131)
87 1jko_C HIN recombinase, DNA-in 67.6 1.8 6.2E-05 21.0 0.9 41 56-101 6-46 (52)
88 2k27_A Paired box protein PAX- 66.8 7.1 0.00024 24.0 3.7 42 55-101 25-66 (159)
89 1u78_A TC3 transposase, transp 66.2 2.6 9E-05 25.1 1.5 43 54-101 5-47 (141)
90 3ulq_B Transcriptional regulat 58.7 4.6 0.00016 22.9 1.6 40 52-97 26-65 (90)
91 3i5g_B Myosin regulatory light 56.2 31 0.0011 20.8 5.5 40 52-91 6-50 (153)
92 1pdn_C Protein (PRD paired); p 55.3 3.8 0.00013 23.7 0.9 41 55-100 17-57 (128)
93 1p4w_A RCSB; solution structur 50.1 11 0.00039 21.7 2.4 40 53-98 32-71 (99)
94 1k78_A Paired box protein PAX5 48.3 5.7 0.0002 24.1 0.9 43 54-101 31-73 (149)
95 1ku3_A Sigma factor SIGA; heli 47.6 8.7 0.0003 20.4 1.5 37 55-96 10-50 (73)
96 3fmy_A HTH-type transcriptiona 46.0 17 0.00058 19.2 2.5 39 54-99 9-47 (73)
97 3hug_A RNA polymerase sigma fa 43.4 11 0.00036 21.1 1.4 38 55-97 37-74 (92)
98 1iuf_A Centromere ABP1 protein 43.2 18 0.00061 22.1 2.6 46 50-98 6-58 (144)
99 2o8x_A Probable RNA polymerase 42.4 11 0.00039 19.4 1.4 38 55-97 15-52 (70)
100 2p7v_B Sigma-70, RNA polymeras 41.5 12 0.0004 19.6 1.3 41 55-96 5-45 (68)
101 1fse_A GERE; helix-turn-helix 41.1 12 0.00042 19.5 1.4 40 53-98 9-48 (74)
102 3dtn_A Putative methyltransfer 40.1 23 0.00078 22.6 2.9 30 71-102 189-218 (234)
103 2rn7_A IS629 ORFA; helix, all 39.7 12 0.00041 21.4 1.3 47 54-100 5-54 (108)
104 2yus_A SWI/SNF-related matrix- 39.4 45 0.0015 18.4 3.7 48 49-100 14-62 (79)
105 1je8_A Nitrate/nitrite respons 39.2 12 0.00041 20.5 1.2 39 54-98 20-58 (82)
106 3c57_A Two component transcrip 38.5 15 0.00051 20.7 1.6 38 54-97 26-63 (95)
107 2kvr_A Ubiquitin carboxyl-term 38.3 19 0.00064 22.0 2.1 19 79-97 72-90 (130)
108 1tty_A Sigma-A, RNA polymerase 38.2 15 0.0005 20.3 1.5 38 55-97 18-59 (87)
109 2x48_A CAG38821; archeal virus 38.0 9.5 0.00033 18.9 0.6 36 58-98 18-53 (55)
110 3o9x_A Uncharacterized HTH-typ 35.9 27 0.00093 20.6 2.5 37 56-99 71-107 (133)
111 2jpf_A Hypothetical protein; a 35.6 3.4 0.00012 24.3 -1.6 10 92-101 53-62 (127)
112 2qko_A Possible transcriptiona 32.3 12 0.00039 23.5 0.4 36 63-99 36-71 (215)
113 1x3u_A Transcriptional regulat 32.2 15 0.0005 19.5 0.8 36 56-97 17-52 (79)
114 1s7o_A Hypothetical UPF0122 pr 31.7 16 0.00054 21.6 0.9 39 55-98 22-60 (113)
115 2lv7_A Calcium-binding protein 28.0 54 0.0019 18.4 2.8 48 52-99 26-80 (100)
116 1xsv_A Hypothetical UPF0122 pr 26.9 24 0.00083 20.6 1.2 37 56-97 26-62 (113)
117 3mzy_A RNA polymerase sigma-H 26.1 20 0.00069 21.3 0.7 37 55-97 109-145 (164)
118 2pmy_A RAS and EF-hand domain- 25.4 11 0.00038 20.6 -0.6 46 54-99 19-69 (91)
119 3i5g_C Myosin catalytic light 25.3 72 0.0025 19.2 3.3 37 55-91 2-45 (159)
120 2q0o_A Probable transcriptiona 24.2 33 0.0011 22.4 1.5 41 53-99 173-213 (236)
121 2rnj_A Response regulator prot 24.1 22 0.00077 19.6 0.6 38 54-97 28-65 (91)
122 2lhi_A Calmodulin, serine/thre 23.6 67 0.0023 19.7 2.9 39 53-91 2-45 (176)
123 1l3l_A Transcriptional activat 22.8 42 0.0014 21.8 1.9 41 53-99 171-211 (234)
124 2jtd_A Myomesin-1, skelemin; i 22.6 0.49 1.7E-05 29.6 -7.1 44 55-99 18-61 (142)
125 1rzs_A Antirepressor, regulato 22.2 18 0.00061 18.6 -0.1 19 79-97 13-31 (61)
126 3fiw_A Putative TETR-family tr 21.7 18 0.0006 23.2 -0.2 48 51-99 20-68 (211)
127 1l4a_A Synaptobrevin; snare, s 20.8 18 0.00062 20.1 -0.3 9 94-102 72-80 (80)
128 2gqb_A Conserved hypothetical 20.6 65 0.0022 19.8 2.2 19 72-90 79-97 (130)
129 1fi6_A EH domain protein REPS1 20.2 38 0.0013 18.5 1.1 41 56-96 3-48 (92)
No 1
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=1.1e-22 Score=114.87 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=55.9
Q ss_pred CccCcCCCCCCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHcCCCcCccceeeecccccC
Q psy15887 45 NSKRQRRQRTHFTSQQLQELEATFAR-NRYPDMSTREEIAMWTNLTEALRETHAYSYNFLI 104 (104)
Q Consensus 45 ~~~~~rr~Rt~~t~~Q~~~L~~~F~~-~~~p~~~~r~~La~~l~l~~~~VqvWFQN~~~~~ 104 (104)
..+.+||.||.|+.+|+..|+..|+. ++||+...|+.||.++||++++|||||||..|.|
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 34568899999999999999999999 9999999999999999999999999999987754
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.85 E-value=1e-21 Score=115.56 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=52.8
Q ss_pred CccCcCCCCCCCCHHHHHHHHHHhhc----CCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 45 NSKRQRRQRTHFTSQQLQELEATFAR----NRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 45 ~~~~~rr~Rt~~t~~Q~~~L~~~F~~----~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
...++||.||.||..|+..|+..|+. ++||+..+|++||..|+|++++|||||||-
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNr 72 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNN 72 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCcccc
Confidence 34567889999999999999999999 999999999999999999999999999995
No 3
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.84 E-value=2.1e-21 Score=114.18 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=51.8
Q ss_pred CccCcCCCCCCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHcCCCcCccceeeeccc
Q psy15887 45 NSKRQRRQRTHFTSQQLQELEATFAR-----NRYPDMSTREEIAMWTNLTEALRETHAYSYN 101 (104)
Q Consensus 45 ~~~~~rr~Rt~~t~~Q~~~L~~~F~~-----~~~p~~~~r~~La~~l~l~~~~VqvWFQN~~ 101 (104)
...++||.||.||..|+..|+ .|.. ++||+..+|++||..|+|++++|||||||-.
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR 73 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNK 73 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTS
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccc
Confidence 345678899999999999999 8999 9999999999999999999999999999953
No 4
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.2e-21 Score=112.83 Aligned_cols=57 Identities=30% Similarity=0.380 Sum_probs=53.3
Q ss_pred cCccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 44 KNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 44 ~~~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
...++.+|.||.||..|+..|+..|..++||+..++.+||..++|++.+|+|||||-
T Consensus 12 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNR 68 (80)
T 2dmt_A 12 TKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNR 68 (80)
T ss_dssp CCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHH
Confidence 345667889999999999999999999999999999999999999999999999994
No 5
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1e-20 Score=111.99 Aligned_cols=57 Identities=26% Similarity=0.338 Sum_probs=53.3
Q ss_pred cCccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 44 KNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 44 ~~~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
....+.+|.||.||..|+..|+..|..++||+..++..||..+||++.+|+|||||-
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNR 73 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQ 73 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345667889999999999999999999999999999999999999999999999994
No 6
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=9.7e-21 Score=111.09 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=52.8
Q ss_pred CccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 45 ~~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
...+++|.||.||..|+..|+..|..++||+..++.+||..++|++.+|+|||||-
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 68 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNT 68 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHH
Confidence 35567889999999999999999999999999999999999999999999999994
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1.7e-20 Score=107.67 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=52.0
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..+.|+.||.||..|+..|+..|..++||+..++.+||..++|++.+|+|||||-
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNR 58 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNR 58 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhH
Confidence 4557889999999999999999999999999999999999999999999999994
No 8
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-20 Score=106.84 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=52.1
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..+.++.||.||..|+..|+..|..++||+..++.+||..++|++.+|+|||||-
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 58 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNK 58 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4557889999999999999999999999999999999999999999999999995
No 9
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-20 Score=106.23 Aligned_cols=56 Identities=27% Similarity=0.320 Sum_probs=52.5
Q ss_pred CccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 45 ~~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
...+.++.||.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNr 58 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNA 58 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhh
Confidence 34567889999999999999999999999999999999999999999999999994
No 10
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-20 Score=106.41 Aligned_cols=55 Identities=38% Similarity=0.534 Sum_probs=51.8
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..+.+|.||.||..|+..|+..|..++||+..++.+||..++|++.+|+|||||-
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNr 58 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNR 58 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccc
Confidence 3456889999999999999999999999999999999999999999999999994
No 11
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.79 E-value=4.8e-20 Score=107.57 Aligned_cols=56 Identities=29% Similarity=0.367 Sum_probs=52.6
Q ss_pred CccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 45 ~~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
...++++.||.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNR 60 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNH 60 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHh
Confidence 35567888999999999999999999999999999999999999999999999994
No 12
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=3.2e-20 Score=106.41 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=52.1
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..+.++.||.||..|+..|+..|+.++||+..++.+||..+||++.+|+|||||-
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNr 58 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNT 58 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhh
Confidence 4567889999999999999999999999999999999999999999999999994
No 13
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=6.8e-20 Score=107.63 Aligned_cols=55 Identities=35% Similarity=0.509 Sum_probs=51.9
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..+.+|.||.||..|+..|+..|..++||+..++.+||..++|++.+|+|||||-
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNR 58 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNR 58 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHH
Confidence 3456889999999999999999999999999999999999999999999999994
No 14
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=6.9e-20 Score=107.58 Aligned_cols=55 Identities=44% Similarity=0.591 Sum_probs=52.2
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..+.||.||.||..|+..|+..|+.++||+..++.+||..++|++.+|+|||||-
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNR 58 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNR 58 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHH
Confidence 4567889999999999999999999999999999999999999999999999994
No 15
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=9.5e-20 Score=104.48 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=51.0
Q ss_pred cCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 47 ~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.+.++.|+.||..|+..|+..|..++||+..++.+||..++|++.+|+|||||-
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 58 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNR 58 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhh
Confidence 446778999999999999999999999999999999999999999999999994
No 16
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.3e-20 Score=106.95 Aligned_cols=55 Identities=27% Similarity=0.367 Sum_probs=51.9
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..+.||.||.||..|+..|+..|+.++||+..++.+||..++|++.+|+|||||-
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 58 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNA 58 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHH
Confidence 3457889999999999999999999999999999999999999999999999994
No 17
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.78 E-value=5.2e-20 Score=103.60 Aligned_cols=53 Identities=36% Similarity=0.412 Sum_probs=48.9
Q ss_pred CcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 48 RQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 48 ~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
+.+|.||.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNr 54 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNR 54 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhh
Confidence 35789999999999999999999999999999999999999999999999994
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.78 E-value=4.5e-20 Score=103.20 Aligned_cols=53 Identities=30% Similarity=0.399 Sum_probs=47.2
Q ss_pred CcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 48 RQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 48 ~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.+||.||.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 54 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNK 54 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhh
Confidence 35789999999999999999999999999999999999999999999999994
No 19
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.78 E-value=1.3e-19 Score=105.72 Aligned_cols=55 Identities=31% Similarity=0.340 Sum_probs=52.0
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.++.++.||.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNR 64 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNR 64 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4557889999999999999999999999999999999999999999999999994
No 20
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.78 E-value=4.7e-20 Score=103.43 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=46.2
Q ss_pred CcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 48 RQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 48 ~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
++++.||.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNr 54 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQ 54 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHh
Confidence 46788999999999999999999999999999999999999999999999994
No 21
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=1e-19 Score=100.72 Aligned_cols=51 Identities=31% Similarity=0.415 Sum_probs=49.2
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 50 RRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 50 rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
|+.||.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 51 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 51 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHh
Confidence 578999999999999999999999999999999999999999999999994
No 22
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.77 E-value=9.3e-20 Score=107.25 Aligned_cols=55 Identities=49% Similarity=0.697 Sum_probs=51.2
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.++.+|.||.||..|+..|+..|..++||+..++..||..+||++.+|+|||||-
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNr 69 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNR 69 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999994
No 23
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.77 E-value=1e-19 Score=103.20 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=50.9
Q ss_pred CcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 48 RQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 48 ~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
+++|.||.||..|+..|+..|+.++||+..++..||..+||++.+|+|||||-
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 54 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNK 54 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHH
Confidence 46889999999999999999999999999999999999999999999999994
No 24
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.77 E-value=1.2e-19 Score=100.20 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=49.9
Q ss_pred cCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 49 QRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 49 ~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
+++.|+.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 53 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNR 53 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHh
Confidence 4678999999999999999999999999999999999999999999999994
No 25
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.77 E-value=2.2e-19 Score=108.30 Aligned_cols=56 Identities=27% Similarity=0.386 Sum_probs=52.4
Q ss_pred CccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 45 ~~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
...+.|+.||.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNR 68 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNR 68 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhh
Confidence 34567889999999999999999999999999999999999999999999999994
No 26
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.77 E-value=1.3e-19 Score=103.37 Aligned_cols=52 Identities=31% Similarity=0.361 Sum_probs=50.3
Q ss_pred cCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 49 QRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 49 ~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
+||.||.||..|+..|+..|..++||+..++..||..+||++.+|+|||||-
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNR 53 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNR 53 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHH
Confidence 5789999999999999999999999999999999999999999999999994
No 27
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.77 E-value=2.1e-19 Score=103.84 Aligned_cols=55 Identities=29% Similarity=0.365 Sum_probs=51.7
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..+.++.|+.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNR 58 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNR 58 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456889999999999999999999999999999999999999999999999994
No 28
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=7.6e-20 Score=107.39 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=52.2
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcC----CCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARN----RYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~----~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..+++|.||.||..|+..|+..|+.+ +||+..++.+||..+||++.+|+|||||-
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNr 63 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNR 63 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHH
Confidence 45678899999999999999999999 99999999999999999999999999995
No 29
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.76 E-value=9.9e-20 Score=101.73 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=44.2
Q ss_pred cCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 47 ~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.+.++.|+.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNr 56 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINK 56 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999994
No 30
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-19 Score=103.75 Aligned_cols=55 Identities=45% Similarity=0.651 Sum_probs=51.8
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.+++++.||.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 60 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNR 60 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHH
Confidence 4456788999999999999999999999999999999999999999999999994
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=1.9e-19 Score=100.34 Aligned_cols=51 Identities=35% Similarity=0.402 Sum_probs=48.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 50 RRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 50 rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
||.||.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 52 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNR 52 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHH
Confidence 578999999999999999999999999999999999999999999999994
No 32
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.76 E-value=1.3e-19 Score=103.43 Aligned_cols=52 Identities=35% Similarity=0.325 Sum_probs=50.1
Q ss_pred cCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 49 QRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 49 ~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
+||.||.||..|+..|+..|..++||+..++.+||..+||++++|+|||||-
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNR 53 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNR 53 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHH
Confidence 4788999999999999999999999999999999999999999999999994
No 33
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.76 E-value=2.1e-19 Score=108.85 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=48.8
Q ss_pred CccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 45 ~~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.....+|.|+.||..|+..|+..|..++||+..++.+||..+||++++|+|||||-
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNR 76 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDT 76 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhh
Confidence 34456678999999999999999999999999999999999999999999999994
No 34
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=2.7e-19 Score=102.08 Aligned_cols=52 Identities=27% Similarity=0.396 Sum_probs=50.1
Q ss_pred cCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 49 QRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 49 ~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
+|+.||.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNR 53 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNH 53 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHH
Confidence 5788999999999999999999999999999999999999999999999994
No 35
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.76 E-value=3.5e-19 Score=106.31 Aligned_cols=55 Identities=36% Similarity=0.338 Sum_probs=48.1
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..+.+|.||.||..|+..|+..|..++||+..++.+||..+||++++|+|||||-
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNR 79 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNR 79 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHH
Confidence 3456889999999999999999999999999999999999999999999999994
No 36
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.75 E-value=1.2e-19 Score=103.58 Aligned_cols=53 Identities=75% Similarity=0.992 Sum_probs=50.8
Q ss_pred CcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 48 RQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 48 ~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
++++.||.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 54 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR 54 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999994
No 37
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.75 E-value=2.8e-19 Score=105.24 Aligned_cols=55 Identities=31% Similarity=0.289 Sum_probs=47.2
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..+.+|.||.||..|+..|+..|..++||+..++.+||..+||++++|+|||||-
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNR 71 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNR 71 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHh
Confidence 3456789999999999999999999999999999999999999999999999994
No 38
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.74 E-value=6.4e-19 Score=100.19 Aligned_cols=52 Identities=33% Similarity=0.388 Sum_probs=49.8
Q ss_pred cCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 49 QRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 49 ~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.||.||.||..|+..|+..|..++||+..++..||..+||++.+|+|||||-
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 52 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNR 52 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhH
Confidence 3678999999999999999999999999999999999999999999999994
No 39
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=7.7e-19 Score=102.01 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 51 RQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 51 r~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.+|+.||.+|+..|+..|..++||+..++++||..+||++.+|+|||||-
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNr 54 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDT 54 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhh
Confidence 35667999999999999999999999999999999999999999999995
No 40
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=7.6e-19 Score=106.57 Aligned_cols=54 Identities=33% Similarity=0.353 Sum_probs=48.1
Q ss_pred cCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 47 ~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.+.++.||.||..|+..|+..|..++||+..++.+||..+||++++|+|||||-
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNR 85 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNR 85 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHH
Confidence 457888999999999999999999999999999999999999999999999994
No 41
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.8e-18 Score=99.82 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=51.4
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFAR---NRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..+.++.|+.|+..|+..|+..|.. ++||+..++.+||..+||++.+|+|||||.
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNr 61 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINA 61 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHH
Confidence 4557788999999999999999986 999999999999999999999999999995
No 42
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-18 Score=100.85 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=49.1
Q ss_pred cCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 49 QRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 49 ~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
+.+.|+.||..|+..|+..|..++||+..++.+||..+||++++|+|||||-
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNr 59 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDR 59 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHH
Confidence 3456899999999999999999999999999999999999999999999995
No 43
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-18 Score=100.08 Aligned_cols=52 Identities=23% Similarity=0.239 Sum_probs=50.0
Q ss_pred cCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 49 QRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 49 ~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.++.||.||..|+..|+..|..++||+..++.+||..+||++++|+|||||-
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 57 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDT 57 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhH
Confidence 5678999999999999999999999999999999999999999999999994
No 44
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-18 Score=99.79 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 51 RQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 51 r~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
++|+.||..|+..|+..|..++||+..++.+||..+||++++|+|||||-
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNR 58 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSER 58 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHH
Confidence 35667999999999999999999999999999999999999999999995
No 45
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=1.8e-18 Score=99.85 Aligned_cols=52 Identities=27% Similarity=0.188 Sum_probs=49.0
Q ss_pred cCCCCCCCCHHHHHHHHHHhh-cCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 49 QRRQRTHFTSQQLQELEATFA-RNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 49 ~rr~Rt~~t~~Q~~~L~~~F~-~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.++.||.||..|+..|+..|+ .++||+..++.+||..+||++++|+|||||-
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNR 54 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQR 54 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 356799999999999999999 4999999999999999999999999999994
No 46
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.72 E-value=1.3e-18 Score=96.98 Aligned_cols=49 Identities=47% Similarity=0.584 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 52 QRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 52 ~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
+||.||..|+..|+..|..++||+..++.+||..+||++.+|+|||||-
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 50 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNR 50 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhh
Confidence 5899999999999999999999999999999999999999999999994
No 47
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=2.5e-18 Score=99.03 Aligned_cols=51 Identities=27% Similarity=0.255 Sum_probs=48.4
Q ss_pred CCCCCCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 50 RRQRTHFTSQQLQELEATFAR-NRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 50 rr~Rt~~t~~Q~~~L~~~F~~-~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.+.|+.||..|+..|+..|+. ++||+..++.+||..+||++++|+|||||-
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNR 53 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQR 53 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHH
Confidence 457899999999999999996 999999999999999999999999999994
No 48
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.72 E-value=1.8e-18 Score=113.35 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=48.2
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..++||.||.||..|+..|+..|..++||+..++.+||..+||++++|+|||||-
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNR 152 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNR 152 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHh
Confidence 3467889999999999999999999999999999999999999999999999994
No 49
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=3.2e-18 Score=103.41 Aligned_cols=55 Identities=29% Similarity=0.329 Sum_probs=52.1
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcC---------------CCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTN---------------LTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~---------------l~~~~VqvWFQN~ 100 (104)
..+.+|.|+.||..|+..|+..|+.++||+..++++||..++ |++.+|++||||-
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNR 73 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANR 73 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999 9999999999994
No 50
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.70 E-value=3.2e-18 Score=94.12 Aligned_cols=47 Identities=30% Similarity=0.367 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 54 THFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 54 t~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
|.||..|+..|+..|..++||+..++.+||..+||++++|+|||||-
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNR 48 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNR 48 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHh
Confidence 67999999999999999999999999999999999999999999994
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=3.7e-18 Score=96.14 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=50.6
Q ss_pred CcCCCCCCCCHHHHHHHHHHh---hcCCCCCHHHHHHHHHHcCCCcCccceeeeccc
Q psy15887 48 RQRRQRTHFTSQQLQELEATF---ARNRYPDMSTREEIAMWTNLTEALRETHAYSYN 101 (104)
Q Consensus 48 ~~rr~Rt~~t~~Q~~~L~~~F---~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~~ 101 (104)
..++.|+.|+..|+..|+..| ..++||+..++.+||..+||++.+|++||||-.
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR 58 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKR 58 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357889999999999999999 999999999999999999999999999999953
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.70 E-value=6.3e-18 Score=97.52 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=49.7
Q ss_pred cCCCCCCCCHHHHHHHHHHh---hcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 49 QRRQRTHFTSQQLQELEATF---ARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 49 ~rr~Rt~~t~~Q~~~L~~~F---~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
+||.|+.||..|+..|+..| ..++||+..++..||..+||++.+|+|||||-
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNr 55 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNK 55 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 36789999999999999999 99999999999999999999999999999995
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.70 E-value=9.5e-18 Score=99.12 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=50.8
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFAR---NRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..++++.|+.|+..|+..|+..|.. ++||+..++.+||..+||++.||+|||||.
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNr 61 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINA 61 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhh
Confidence 3456788999999999999999987 699999999999999999999999999995
No 54
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.69 E-value=6.9e-18 Score=109.15 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=49.0
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..++||.||.||..|+..|+..|..++||+..++.+||..+||++++|+|||||-
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNR 138 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNR 138 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhh
Confidence 4567788999999999999999999999999999999999999999999999994
No 55
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.68 E-value=8.8e-18 Score=102.24 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=46.8
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH------------------cC---CCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMW------------------TN---LTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~------------------l~---l~~~~VqvWFQN~ 100 (104)
.++.||.|+.||..|+..|+..|+.++||+...|++||.. || |++.+|+|||||-
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNR 81 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANR 81 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHH
Confidence 4567889999999999999999999999999999999999 88 9999999999994
No 56
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-17 Score=101.07 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=51.7
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHc---------------------CCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWT---------------------NLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l---------------------~l~~~~VqvWFQN~ 100 (104)
.++.||.||.|+..|+..|+..|+.++||+..+|++||..+ .+++.+|+|||||-
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNR 78 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 78 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecch
Confidence 45678899999999999999999999999999999999999 79999999999994
No 57
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=2.4e-17 Score=98.51 Aligned_cols=46 Identities=20% Similarity=0.129 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 55 HFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.||.+|+..|+..|..++||+..+|.+||..|||+++||+|||||-
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNR 62 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEK 62 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeeccccc
Confidence 7899999999999999999999999999999999999999999994
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.68 E-value=8.6e-18 Score=100.01 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=50.6
Q ss_pred cCcCCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 47 KRQRRQRTHFTSQQLQELEATFAR---NRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 47 ~~~rr~Rt~~t~~Q~~~L~~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.++++.|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||||-
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNr 81 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNR 81 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 445667999999999999999999 999999999999999999999999999995
No 59
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.68 E-value=1.9e-17 Score=107.56 Aligned_cols=55 Identities=25% Similarity=0.348 Sum_probs=52.1
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..++||.||.||..|+..|+..|..++||+..++.+||..+||++++|+|||||-
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNr 144 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNR 144 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999994
No 60
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.68 E-value=6.4e-18 Score=111.19 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=44.3
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..++||.||.||..|+..|+..|..++||+..+|.+||..++|++++|+|||||-
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNR 150 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNR 150 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHh
Confidence 4567889999999999999999999999999999999999999999999999994
No 61
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.67 E-value=1.8e-17 Score=98.55 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=48.6
Q ss_pred cCCCCCCCCHHHHHHHHHHh---hcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 49 QRRQRTHFTSQQLQELEATF---ARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 49 ~rr~Rt~~t~~Q~~~L~~~F---~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
+||.|+.|+..|+..|+..| ..++||+..++..||..+||++.+|++||||-
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNr 55 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNK 55 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 36789999999999999999 89999999999999999999999999999995
No 62
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=7.9e-18 Score=97.04 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=47.0
Q ss_pred CCCCCCCCHHHHHHHHHHh-hcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 50 RRQRTHFTSQQLQELEATF-ARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 50 rr~Rt~~t~~Q~~~L~~~F-~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.+.|.+++..|+..||..| ..++||+..++.+||..+||++++|+|||||-
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNR 60 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHR 60 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhc
Confidence 4456677888999999999 99999999999999999999999999999994
No 63
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.8e-17 Score=96.88 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 55 HFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.||..|+..|+..|..++||+..++.+||..++|++++|+|||||-
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNR 64 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSER 64 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhH
Confidence 4899999999999999999999999999999999999999999994
No 64
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.66 E-value=2.8e-17 Score=91.44 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 52 QRTHFTSQQLQELEATFAR---NRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 52 ~Rt~~t~~Q~~~L~~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.|+.||..|+..|+..|.. ++||+..++..||..+||++.+|++||||-
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNr 52 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNR 52 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3688999999999999999 999999999999999999999999999994
No 65
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.65 E-value=4.6e-17 Score=106.19 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=51.4
Q ss_pred cCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 47 ~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.++||.||.|+..|+..|+..|..++||+..++.+||..+||++++|+|||||-
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNR 147 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNR 147 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccc
Confidence 456788999999999999999999999999999999999999999999999994
No 66
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=5.4e-17 Score=95.82 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=46.8
Q ss_pred CCCCCCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 50 RRQRTHFTSQQLQELEATFAR---NRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 50 rr~Rt~~t~~Q~~~L~~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
++.|++|+..|+..|+..|.. ++||+..++..||..+||++.+|+|||||-
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNr 56 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAAR 56 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHH
Confidence 345667999999999999999 999999999999999999999999999994
No 67
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.64 E-value=4.9e-17 Score=106.79 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=48.2
Q ss_pred ccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 46 ~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..++||.||.||..|+..|+..|+.++||+..++..||..+||++++|+|||||-
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNr 148 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNA 148 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhh
Confidence 4567889999999999999999999999999999999999999999999999995
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.3e-17 Score=91.27 Aligned_cols=47 Identities=21% Similarity=0.099 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 54 THFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 54 t~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
...+.+|+..|+..|..++||+..+|.+||..+||++++|+|||||-
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNR 54 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKM 54 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcc
Confidence 34578999999999999999999999999999999999999999994
No 69
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.64 E-value=4.5e-17 Score=91.83 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 57 TSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 57 t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
|..|+..|+..|..++||+..++.+||..+||++++|++||||-
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNR 55 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDH 55 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccc
Confidence 78999999999999999999999999999999999999999994
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-16 Score=90.48 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 54 THFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 54 t~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..+|..|+..|+..|..++||+..+|.+||..+||++++|+|||||-
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNR 55 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNR 55 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhh
Confidence 46799999999999999999999999999999999999999999994
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=2.3e-16 Score=88.76 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=39.4
Q ss_pred HHHHHHHHHh-hcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 59 QQLQELEATF-ARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 59 ~Q~~~L~~~F-~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.|+.+||..| ..++||+..+|.+||..|+|+++||||||||=
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNR 52 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQR 52 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3799999999 67999999999999999999999999999994
No 72
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.55 E-value=3.7e-16 Score=105.15 Aligned_cols=56 Identities=23% Similarity=0.255 Sum_probs=48.8
Q ss_pred CccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcC---------------------CCcCccceeeecc
Q psy15887 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTN---------------------LTEALRETHAYSY 100 (104)
Q Consensus 45 ~~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~---------------------l~~~~VqvWFQN~ 100 (104)
..++.||.|+.|+..|+..|+..|+.++||+...|++||..++ |++.+|++||||-
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNR 187 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANR 187 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhh
Confidence 4466789999999999999999999999999999999999999 9999999999994
No 73
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.52 E-value=3.3e-15 Score=101.88 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=49.6
Q ss_pred cCccCcCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcC---------------------CCcCccceeeecc
Q psy15887 44 KNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTN---------------------LTEALRETHAYSY 100 (104)
Q Consensus 44 ~~~~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~---------------------l~~~~VqvWFQN~ 100 (104)
+..++.||.|+.|+..|+..|+..|+.++||+..+|++||..++ |++.+|++||||-
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNR 214 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 214 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHH
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHh
Confidence 34567789999999999999999999999999999999999887 8899999999994
No 74
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=6.6e-15 Score=83.58 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHhh---cCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 55 HFTSQQLQELEATFA---RNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~---~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.|+..|+..|+..|. .++||+..++.+||..+||++.||++||||.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNr 52 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINA 52 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHH
Confidence 689999999999999 9999999999999999999999999999995
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=7.7e-15 Score=83.28 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 58 SQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 58 ~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.+|+..|++.|..+++|+..++..||..+||+.++|||||||-
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNr 56 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQR 56 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhc
Confidence 4689999999999999999999999999999999999999994
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.25 E-value=1.2e-12 Score=95.06 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=48.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeeccc
Q psy15887 50 RRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSYN 101 (104)
Q Consensus 50 rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~~ 101 (104)
++.++.++..|+..|++.|+.++||+..+|++||.++||+++||||||||-.
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r 417 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKR 417 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcc
Confidence 4567889999999999999999999999999999999999999999999953
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.25 E-value=1.6e-12 Score=77.32 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 54 THFTSQQLQELEATFAR---NRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 54 t~~t~~Q~~~L~~~F~~---~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..|+..++..|+..|.. ++||+..++.+||..+||++.||++||||.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~Nr 59 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINA 59 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 46899999999999987 999999999999999999999999999996
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=97.72 E-value=3.4e-06 Score=41.98 Aligned_cols=10 Identities=0% Similarity=-0.320 Sum_probs=8.8
Q ss_pred Cccceeeecc
Q psy15887 91 ALRETHAYSY 100 (104)
Q Consensus 91 ~~VqvWFQN~ 100 (104)
+||+|||||-
T Consensus 1 rQVkIWFQNR 10 (37)
T 2nzz_A 1 RQIKIWFQNR 10 (37)
T ss_dssp CCTTTTTTCS
T ss_pred CCceeccHHH
Confidence 5899999995
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.63 E-value=0.0033 Score=35.24 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=34.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceee
Q psy15887 62 QELEATFARNRYPDMSTREEIAMWTNLTEALRETHA 97 (104)
Q Consensus 62 ~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWF 97 (104)
..|+..|.....+.......|+.+..|+..||+.||
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwF 54 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWF 54 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHH
Confidence 569999999999999999999999999999999999
No 80
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=89.06 E-value=0.17 Score=28.87 Aligned_cols=47 Identities=9% Similarity=0.037 Sum_probs=33.3
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeeccc
Q psy15887 50 RRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSYN 101 (104)
Q Consensus 50 rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~~ 101 (104)
++.+..|+.++.......+... . ...++|..+|++...|.-|...|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4456678888866555555432 2 245789999999999999987664
No 81
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=88.15 E-value=0.0037 Score=40.31 Aligned_cols=30 Identities=7% Similarity=-0.024 Sum_probs=21.7
Q ss_pred cCcCCCCCCCCHHHHHHHHHHhhcCCCCCH
Q psy15887 47 KRQRRQRTHFTSQQLQELEATFARNRYPDM 76 (104)
Q Consensus 47 ~~~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~ 76 (104)
.+.||.||.|+.+|++.|++.|+.++||+.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456889999999999999999999999864
No 82
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=83.92 E-value=0.52 Score=22.80 Aligned_cols=42 Identities=7% Similarity=-0.049 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeeccc
Q psy15887 55 HFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSYN 101 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~~ 101 (104)
.++..+...+...+... + ...++|..+|++...|.-|...|.
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 45677665555555433 2 255889999999999999987664
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=82.78 E-value=0.76 Score=23.98 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeeccc
Q psy15887 53 RTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSYN 101 (104)
Q Consensus 53 Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~~ 101 (104)
|..|+.+........+... ........++|..+|++...|.-|-..|.
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3468888776664444433 22111245889999999999999977653
No 84
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=82.71 E-value=0.86 Score=30.99 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCCcCccceeeecccc
Q psy15887 77 STREEIAMWTNLTEALRETHAYSYNF 102 (104)
Q Consensus 77 ~~r~~La~~l~l~~~~VqvWFQN~~~ 102 (104)
.+-..+....|. ..|.+|||++||
T Consensus 226 ~~~~~~L~~AGF--~~ve~~fq~~nF 249 (261)
T 4gek_A 226 ETHKARLHKAGF--EHSELWFQCFNF 249 (261)
T ss_dssp HHHHHHHHHHTC--SEEEEEEEETTE
T ss_pred HHHHHHHHHcCC--CeEEEEEEeccE
Confidence 334455666675 468999999998
No 85
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=74.41 E-value=1.4 Score=25.07 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHcCCCcCccceeeeccc
Q psy15887 53 RTHFTSQQLQELEATFARN-RYPDMSTREEIAMWTNLTEALRETHAYSYN 101 (104)
Q Consensus 53 Rt~~t~~Q~~~L~~~F~~~-~~p~~~~r~~La~~l~l~~~~VqvWFQN~~ 101 (104)
|..||.++....-..+... .. ....+|..+|++...|.-|...|.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHHHh
Confidence 3568888776655554322 22 256889999999999999987664
No 86
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=71.36 E-value=2.7 Score=25.01 Aligned_cols=46 Identities=17% Similarity=0.108 Sum_probs=34.0
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 52 QRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 52 ~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
+|..||.++...+-..+....... ..++|..+|++...|.-|..++
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~ 49 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNK 49 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhch
Confidence 577899999888777764444443 2368999999998888887654
No 87
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=67.63 E-value=1.8 Score=21.01 Aligned_cols=41 Identities=5% Similarity=0.080 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeeccc
Q psy15887 56 FTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSYN 101 (104)
Q Consensus 56 ~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~~ 101 (104)
++.++...+...+... . ...++|..+|++...|.-|+..+.
T Consensus 6 ~~~~~~~~i~~l~~~g-~----s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-H----PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT-C----CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC-C----CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 3444555444444433 1 345789999999999988987664
No 88
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=66.79 E-value=7.1 Score=24.03 Aligned_cols=42 Identities=7% Similarity=-0.050 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeeccc
Q psy15887 55 HFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSYN 101 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~~ 101 (104)
.++.++...+...+.... ...++|..++++...|.-|...|.
T Consensus 25 ~~s~e~r~~ii~l~~~G~-----s~~~IA~~lgis~~TV~rwl~r~~ 66 (159)
T 2k27_A 25 PLPEVVRQRIVDLAHQGV-----RPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp SSCHHHHHHHHHHHHHTC-----CHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 578887776666665432 245789999999999999998874
No 89
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=66.21 E-value=2.6 Score=25.12 Aligned_cols=43 Identities=7% Similarity=-0.043 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeeccc
Q psy15887 54 THFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSYN 101 (104)
Q Consensus 54 t~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~~ 101 (104)
..++.++...+...+.... ...++|..+|++...|.-|+..|.
T Consensus 5 ~~~s~~~r~~i~~~~~~G~-----s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred ccCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHccc
Confidence 3577887777766665432 245789999999999999988764
No 90
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=58.69 E-value=4.6 Score=22.92 Aligned_cols=40 Identities=20% Similarity=0.090 Sum_probs=28.4
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceee
Q psy15887 52 QRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHA 97 (104)
Q Consensus 52 ~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWF 97 (104)
....+|..+..+|.-..+-. ...++|..++++...|+...
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~ 65 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSL 65 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHH
Confidence 45568999999988766332 36688999999998887543
No 91
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=56.17 E-value=31 Score=20.84 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHcCCCcC
Q psy15887 52 QRTHFTSQQLQELEATFAR-----NRYPDMSTREEIAMWTNLTEA 91 (104)
Q Consensus 52 ~Rt~~t~~Q~~~L~~~F~~-----~~~p~~~~r~~La~~l~l~~~ 91 (104)
+|..+|..|+..|...|.. +-+.+..+...+.+.+|....
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 4567999999999999963 457888887777788876654
No 92
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=55.33 E-value=3.8 Score=23.72 Aligned_cols=41 Identities=7% Similarity=-0.035 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeecc
Q psy15887 55 HFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
.++.++...+...+... + ...++|..++++...|.-|...|
T Consensus 17 ~~s~~~r~~i~~~~~~g-~----s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADG-I----RPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 47777776666666533 2 24578999999999999998776
No 93
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=50.13 E-value=11 Score=21.69 Aligned_cols=40 Identities=13% Similarity=-0.023 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeee
Q psy15887 53 RTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAY 98 (104)
Q Consensus 53 Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQ 98 (104)
...+|..+...|.-.++-. .-.++|..++++...|+.+.+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ 71 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKK 71 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 4568999999987765433 246899999999988876654
No 94
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=48.26 E-value=5.7 Score=24.10 Aligned_cols=43 Identities=7% Similarity=-0.039 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeeccc
Q psy15887 54 THFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSYN 101 (104)
Q Consensus 54 t~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN~~ 101 (104)
..++.++.......+... + ...++|..+|++...|.-|...|.
T Consensus 31 ~~~s~e~r~~iv~~~~~G-~----s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQG-V----RPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp SCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357887777666666533 2 245789999999999999987763
No 95
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=47.58 E-value=8.7 Score=20.40 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHhh----cCCCCCHHHHHHHHHHcCCCcCcccee
Q psy15887 55 HFTSQQLQELEATFA----RNRYPDMSTREEIAMWTNLTEALRETH 96 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~----~~~~p~~~~r~~La~~l~l~~~~VqvW 96 (104)
.+++.+...+...|. ... .-.++|..+|++...|+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~-----s~~eIA~~l~is~~tV~~~ 50 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH-----TLEEVGAYFGVTRERIRQI 50 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC-----CHHHHHHHHTCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCC-----CHHHHHHHHCCCHHHHHHH
Confidence 467888888888774 221 2458999999999888765
No 96
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=46.01 E-value=17 Score=19.20 Aligned_cols=39 Identities=3% Similarity=-0.077 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeec
Q psy15887 54 THFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYS 99 (104)
Q Consensus 54 t~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN 99 (104)
..++...+..+......+ ..+||..+|++...|.-|=++
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTT
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcC
Confidence 357788777776554433 568899999998888777544
No 97
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=43.37 E-value=11 Score=21.07 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceee
Q psy15887 55 HFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHA 97 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWF 97 (104)
.++..+...|.-.|.... .-.++|..+|++...|+.+.
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l 74 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRL 74 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHH
Confidence 356777777766543332 35689999999998887654
No 98
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=43.17 E-value=18 Score=22.10 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=31.5
Q ss_pred CCCCCCCCHHHHHHHHHHh-hcCCCCCHHHHHHHHH----Hc--CCCcCccceeee
Q psy15887 50 RRQRTHFTSQQLQELEATF-ARNRYPDMSTREEIAM----WT--NLTEALRETHAY 98 (104)
Q Consensus 50 rr~Rt~~t~~Q~~~L~~~F-~~~~~p~~~~r~~La~----~l--~l~~~~VqvWFQ 98 (104)
++.|.++|.+|...+-..+ +.++-.. ...||. .+ +++...|.-|..
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~---q~~la~wa~~~f~~~is~stis~ilk 58 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSG---QQDLIEWFREKFGKDISQPSVSQILS 58 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCC---HHHHHHHHHHHHSSCCSSSSTTHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHCCCCcHHHHHHHHh
Confidence 6788999999999998888 5555443 334566 66 566666655543
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=42.41 E-value=11 Score=19.36 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceee
Q psy15887 55 HFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHA 97 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWF 97 (104)
.+++.+...+...|.... .-.++|..+|++...|+.+.
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~ 52 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRV 52 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHH
Confidence 467778888876654332 35688999999998876654
No 100
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=41.54 E-value=12 Score=19.57 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCcccee
Q psy15887 55 HFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETH 96 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvW 96 (104)
.+++.+...|...|....+-. ..-.++|..+|++...|+.+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~ 45 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQI 45 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHH
Confidence 367888888887772211101 12468899999999887654
No 101
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=41.07 E-value=12 Score=19.47 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeee
Q psy15887 53 RTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAY 98 (104)
Q Consensus 53 Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQ 98 (104)
-..+++.+...|...++.. .-.++|..+|++...|+.+..
T Consensus 9 ~~~L~~~e~~il~~~~~g~------s~~eIA~~l~is~~tV~~~~~ 48 (74)
T 1fse_A 9 KPLLTKREREVFELLVQDK------TTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp CCCCCHHHHHHHHHHTTTC------CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHH
Confidence 3457888988887743322 345789999999988776544
No 102
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=40.13 E-value=23 Score=22.58 Aligned_cols=30 Identities=10% Similarity=0.019 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHcCCCcCccceeeecccc
Q psy15887 71 NRYPDMSTREEIAMWTNLTEALRETHAYSYNF 102 (104)
Q Consensus 71 ~~~p~~~~r~~La~~l~l~~~~VqvWFQN~~~ 102 (104)
....+..+-..+....|+ ..|++||++++|
T Consensus 189 ~~~~~~~~~~~ll~~aGF--~~v~~~~~~~~~ 218 (234)
T 3dtn_A 189 DKDIEMNQQLNWLKEAGF--RDVSCIYKYYQF 218 (234)
T ss_dssp CCCCBHHHHHHHHHHTTC--EEEEEEEEETTE
T ss_pred ccccCHHHHHHHHHHcCC--Cceeeeeeecce
Confidence 344555666677888885 467899999987
No 103
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=39.75 E-value=12 Score=21.41 Aligned_cols=47 Identities=17% Similarity=0.056 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHhhcC--CCCCH-HHHHHHHHHcCCCcCccceeeecc
Q psy15887 54 THFTSQQLQELEATFARN--RYPDM-STREEIAMWTNLTEALRETHAYSY 100 (104)
Q Consensus 54 t~~t~~Q~~~L~~~F~~~--~~p~~-~~r~~La~~l~l~~~~VqvWFQN~ 100 (104)
..||.++....-..+... .|++. .....+|..+|++...|..|-.-|
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 468888776554444222 12221 245689999999999999997654
No 104
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=39.38 E-value=45 Score=18.41 Aligned_cols=48 Identities=13% Similarity=0.031 Sum_probs=32.5
Q ss_pred cCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcC-CCcCccceeeecc
Q psy15887 49 QRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTN-LTEALRETHAYSY 100 (104)
Q Consensus 49 ~rr~Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~-l~~~~VqvWFQN~ 100 (104)
....+..+|.++-..|....+... ..+ ..+|..++ =+..||+.=|+||
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G--~~W--~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK--DDW--NKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS--SCH--HHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC--CCH--HHHHHHcCCCCHHHHHHHHHHh
Confidence 334567899999998888776533 333 35666664 5566777777776
No 105
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=39.16 E-value=12 Score=20.49 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeee
Q psy15887 54 THFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAY 98 (104)
Q Consensus 54 t~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQ 98 (104)
..++..+...|.-.++.. .-.++|..+|++...|+.+..
T Consensus 20 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~ 58 (82)
T 1je8_A 20 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVK 58 (82)
T ss_dssp GGSCHHHHHHHHHHTTTC------CHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 357888888887754322 356899999999988876543
No 106
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=38.52 E-value=15 Score=20.72 Aligned_cols=38 Identities=21% Similarity=0.058 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceee
Q psy15887 54 THFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHA 97 (104)
Q Consensus 54 t~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWF 97 (104)
..++..+...|.-.++.. ...++|..+|++...|+.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l 63 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYV 63 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHH
Confidence 357888988888764433 24688999999998887654
No 107
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=38.33 E-value=19 Score=22.02 Aligned_cols=19 Identities=0% Similarity=-0.046 Sum_probs=16.8
Q ss_pred HHHHHHHcCCCcCccceee
Q psy15887 79 REEIAMWTNLTEALRETHA 97 (104)
Q Consensus 79 r~~La~~l~l~~~~VqvWF 97 (104)
...+|..+|++..+++.|.
T Consensus 72 ~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEE
T ss_pred HHHHHHHhCCCcccEEEEE
Confidence 4578999999999999996
No 108
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=38.23 E-value=15 Score=20.31 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHhh----cCCCCCHHHHHHHHHHcCCCcCccceee
Q psy15887 55 HFTSQQLQELEATFA----RNRYPDMSTREEIAMWTNLTEALRETHA 97 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~----~~~~p~~~~r~~La~~l~l~~~~VqvWF 97 (104)
.+++.+...+...|. ... .-.++|..+|++...|+.+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~-----s~~EIA~~lgis~~tV~~~~ 59 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK-----TLEEVGQYFNVTRERIRQIE 59 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC-----CHHHHHHHHTCCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCCC-----CHHHHHHHHCCCHHHHHHHH
Confidence 367788888877764 221 35688999999998887653
No 109
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=38.01 E-value=9.5 Score=18.90 Aligned_cols=36 Identities=11% Similarity=-0.072 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeee
Q psy15887 58 SQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAY 98 (104)
Q Consensus 58 ~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQ 98 (104)
..+...+...+.... ...++|..+|++...|..|..
T Consensus 18 ~~~~~~i~~l~~~g~-----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMGY-----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTTC-----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
Confidence 555555555444332 355889999999988887754
No 110
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=35.86 E-value=27 Score=20.58 Aligned_cols=37 Identities=3% Similarity=-0.078 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeec
Q psy15887 56 FTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYS 99 (104)
Q Consensus 56 ~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN 99 (104)
++..++..+......+ ..+||..+|++...|.-|=++
T Consensus 71 ~~~~~l~~~R~~~gls-------q~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 71 VAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp CCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCC-------HHHHHHHHCCCHHHHHHHHCC
Confidence 4555555554443322 557899999999888877554
No 111
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=35.57 E-value=3.4 Score=24.27 Aligned_cols=10 Identities=0% Similarity=-0.203 Sum_probs=7.6
Q ss_pred ccceeeeccc
Q psy15887 92 LRETHAYSYN 101 (104)
Q Consensus 92 ~VqvWFQN~~ 101 (104)
-||||.||..
T Consensus 53 dvkvwmqnle 62 (127)
T 2jpf_A 53 DVKVWMQNLE 62 (127)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 4789999853
No 112
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=32.32 E-value=12 Score=23.52 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=25.8
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeec
Q psy15887 63 ELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYS 99 (104)
Q Consensus 63 ~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN 99 (104)
.....|....|-... ...+|...|++...+--+|.|
T Consensus 36 aa~~lf~~~G~~~~t-v~~IA~~agvs~~t~Y~~F~s 71 (215)
T 2qko_A 36 AAIEVLAREGARGLT-FRAVDVEANVPKGTASNYFPS 71 (215)
T ss_dssp HHHHHHHHTCTTTCC-HHHHHHHSSSTTTCHHHHCSC
T ss_pred HHHHHHHHhChhhcc-HHHHHHHcCCCcchHHHhCCC
Confidence 344557777765444 447899999999888777765
No 113
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=32.20 E-value=15 Score=19.49 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceee
Q psy15887 56 FTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHA 97 (104)
Q Consensus 56 ~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWF 97 (104)
+++.+...|.-.++.. ...++|..+|++...|+.+.
T Consensus 17 L~~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~~ 52 (79)
T 1x3u_A 17 LSERERQVLSAVVAGL------PNKSIAYDLDISPRTVEVHR 52 (79)
T ss_dssp HCHHHHHHHHHHTTTC------CHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHH
Confidence 5666777776643222 24588999999988876554
No 114
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=31.68 E-value=16 Score=21.56 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeee
Q psy15887 55 HFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAY 98 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQ 98 (104)
.+++.+...+.-.|.... .-.++|..+|++...|+.|.+
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ 60 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIK 60 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
Confidence 367777777776644332 356899999999988877653
No 115
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=27.97 E-value=54 Score=18.39 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHcC--CCcCccceeeec
Q psy15887 52 QRTHFTSQQLQELEATFAR-----NRYPDMSTREEIAMWTN--LTEALRETHAYS 99 (104)
Q Consensus 52 ~Rt~~t~~Q~~~L~~~F~~-----~~~p~~~~r~~La~~l~--l~~~~VqvWFQN 99 (104)
....++.+++..|...|.. +-+.+..+...+...+| ++...|+.+|+.
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3456788999999999863 45788888777777776 455667666654
No 116
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=26.87 E-value=24 Score=20.64 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceee
Q psy15887 56 FTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHA 97 (104)
Q Consensus 56 ~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWF 97 (104)
+++.+...+.-.|.... .-.++|..+|++...|+.+.
T Consensus 26 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l 62 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNI 62 (113)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHH
Confidence 56677777766543332 35688999999998887654
No 117
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=26.10 E-value=20 Score=21.28 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceee
Q psy15887 55 HFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHA 97 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWF 97 (104)
.+++.+...+. .|... ..-.++|..+|++...|+.+.
T Consensus 109 ~L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~ 145 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTI 145 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHH
Confidence 35566666666 33222 235689999999998887653
No 118
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=25.42 E-value=11 Score=20.60 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHcCCCcCccceeeec
Q psy15887 54 THFTSQQLQELEATFAR-----NRYPDMSTREEIAMWTNLTEALRETHAYS 99 (104)
Q Consensus 54 t~~t~~Q~~~L~~~F~~-----~~~p~~~~r~~La~~l~l~~~~VqvWFQN 99 (104)
..++..+...|...|.. +-+.+..+...+...+|++...|+.+|..
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~ 69 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQR 69 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHH
Confidence 45788888888888853 44677777777778888877777766654
No 119
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=25.33 E-value=72 Score=19.23 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHhhc-----C--CCCCHHHHHHHHHHcCCCcC
Q psy15887 55 HFTSQQLQELEATFAR-----N--RYPDMSTREEIAMWTNLTEA 91 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~~-----~--~~p~~~~r~~La~~l~l~~~ 91 (104)
.+|.+|+..|+..|.. + -+.+..+...+.+.+|+.+.
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t 45 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPT 45 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCC
Confidence 5799999999998852 2 36666666666777876543
No 120
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=24.17 E-value=33 Score=22.37 Aligned_cols=41 Identities=10% Similarity=-0.005 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeec
Q psy15887 53 RTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYS 99 (104)
Q Consensus 53 Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN 99 (104)
...+|+.+...|.-..+-. .-+++|..+++++..|+...+|
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~ 213 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDK 213 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 3458888888887654322 3568899999999988866543
No 121
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.14 E-value=22 Score=19.61 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceee
Q psy15887 54 THFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHA 97 (104)
Q Consensus 54 t~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWF 97 (104)
..++..+...|.-.++... -.++|..+|++...|+.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l 65 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGYS------NQEIASASHITIKTVKTHV 65 (91)
T ss_dssp GGCCSHHHHHHHHHHTTCC------TTHHHHHHTCCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHH
Confidence 3578888888877543322 4478999999998887654
No 122
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=23.59 E-value=67 Score=19.71 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHcCCCcC
Q psy15887 53 RTHFTSQQLQELEATFAR-----NRYPDMSTREEIAMWTNLTEA 91 (104)
Q Consensus 53 Rt~~t~~Q~~~L~~~F~~-----~~~p~~~~r~~La~~l~l~~~ 91 (104)
++.+|.+|+..|+..|.. +-+.+..+-..+...+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 467889999999999863 346777777777777776543
No 123
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=22.84 E-value=42 Score=21.79 Aligned_cols=41 Identities=15% Similarity=0.009 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeec
Q psy15887 53 RTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYS 99 (104)
Q Consensus 53 Rt~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN 99 (104)
...+|..+...|.-..+-. .-.++|..+++++..|+...+|
T Consensus 171 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~ 211 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVGK------TMEEIADVEGVKYNSVRVKLRE 211 (234)
T ss_dssp CCCCCHHHHHHHHHHTTTC------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 4568999998887654322 3568899999999888765443
No 124
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=22.58 E-value=0.49 Score=29.57 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeec
Q psy15887 55 HFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYS 99 (104)
Q Consensus 55 ~~t~~Q~~~L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN 99 (104)
.++.+.+..|.+.-+.-++|..+.+.+|+..+ |..-+|+.|.|=
T Consensus 18 tl~eeeL~rLl~lSheik~P~IpLksel~vEi-LEkG~VRfWlQa 61 (142)
T 2jtd_A 18 SHMEEEMKRLLALSQEHKFPTVPTKSELAVEI-LEKGQVRFWMQA 61 (142)
T ss_dssp ---CCCSHHHHHCCCCCCCSSCSSSCEEEEEE-ETTTEEEEEEEC
T ss_pred eeCHHHHHHHHHhhhhccCCcccchhhhhHHH-HhcCcEEEEEEh
Confidence 45556677788888888999988887776655 345589999984
No 125
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.19 E-value=18 Score=18.64 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=16.7
Q ss_pred HHHHHHHcCCCcCccceee
Q psy15887 79 REEIAMWTNLTEALRETHA 97 (104)
Q Consensus 79 r~~La~~l~l~~~~VqvWF 97 (104)
..+||..+|++..-|--|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 5689999999998888887
No 126
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=21.72 E-value=18 Score=23.17 Aligned_cols=48 Identities=6% Similarity=-0.052 Sum_probs=27.4
Q ss_pred CCCCCCCHHHHHH-HHHHhhcCCCCCHHHHHHHHHHcCCCcCccceeeec
Q psy15887 51 RQRTHFTSQQLQE-LEATFARNRYPDMSTREEIAMWTNLTEALRETHAYS 99 (104)
Q Consensus 51 r~Rt~~t~~Q~~~-L~~~F~~~~~p~~~~r~~La~~l~l~~~~VqvWFQN 99 (104)
+.|...|.+++.. ....|...-|-... ...||..+|++...+--+|.|
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~G~~~~s-~~~IA~~aGvs~~tlY~~F~~ 68 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEVGLDGVS-TRRLAKRLGVEQPSLYWYFRT 68 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHHCGGGCC-HHHHHHHHTSCTHHHHTTCSS
T ss_pred ccccccCHHHHHHHHHHHHHhcCcccCC-HHHHHHHhCCChhHHHHHcCC
Confidence 3444556665543 34446665554333 447899999998777666654
No 127
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=20.79 E-value=18 Score=20.10 Aligned_cols=9 Identities=0% Similarity=-0.171 Sum_probs=2.5
Q ss_pred ceeeecccc
Q psy15887 94 ETHAYSYNF 102 (104)
Q Consensus 94 qvWFQN~~~ 102 (104)
+.|+|||.+
T Consensus 72 k~wwkn~K~ 80 (80)
T 1l4a_A 72 KFWWKNCKM 80 (80)
T ss_dssp HCC------
T ss_pred HHHHHHhcC
Confidence 789999863
No 128
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=20.58 E-value=65 Score=19.81 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHcCCCc
Q psy15887 72 RYPDMSTREEIAMWTNLTE 90 (104)
Q Consensus 72 ~~p~~~~r~~La~~l~l~~ 90 (104)
--.+...|++||..|+++.
T Consensus 79 lDsSl~~RkeLA~eL~~~~ 97 (130)
T 2gqb_A 79 IDSSLSARKELAKELGYSG 97 (130)
T ss_dssp CCCSHHHHHHHHHHHTCCC
T ss_pred CCccHHHHHHHHHHhCCCC
Confidence 3467789999999999874
No 129
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.18 E-value=38 Score=18.51 Aligned_cols=41 Identities=20% Similarity=0.070 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHcCCCcCcccee
Q psy15887 56 FTSQQLQELEATFAR-----NRYPDMSTREEIAMWTNLTEALRETH 96 (104)
Q Consensus 56 ~t~~Q~~~L~~~F~~-----~~~p~~~~r~~La~~l~l~~~~VqvW 96 (104)
++.++...+...|.. +-+.+..+-..+...++++...++-+
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i 48 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHI 48 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHH
Confidence 467777888887753 33456666556566667766554433
Done!