RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15887
(104 letters)
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 81.3 bits (201), Expect = 4e-22
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 29 EDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNL 88
ED S +S ++QRR RT F++ QL ELE F R +YPD+ TREE+A TNL
Sbjct: 1 EDISDCESEPGIAL---KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNL 57
Query: 89 TEA 91
TEA
Sbjct: 58 TEA 60
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Mus musculus}
Length = 80
Score = 78.6 bits (194), Expect = 5e-21
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
+ RR+RT FT QL LEA FA+ RYPD+ REE+A+ NL E+
Sbjct: 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPES 49
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 78.1 bits (193), Expect = 6e-21
Identities = 40/44 (90%), Positives = 42/44 (95%)
Query: 48 RQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
QRRQRTHFTSQQLQ+LEATF RNRYPDMSTREEIA+WTNLTEA
Sbjct: 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEA 45
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 77.0 bits (190), Expect = 1e-20
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 44 KNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
+ RR RT FT +QL+ LE F +YPD+ TRE++A +L E
Sbjct: 2 SSGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREE 49
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 73.6 bits (181), Expect = 5e-19
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
+ +R RT F QL+ +++ FA N PD +++A T LT+
Sbjct: 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKR 49
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 71.3 bits (175), Expect = 4e-18
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
+ +R RT FT +Q++ LE F R YPD+ RE +A +L EA
Sbjct: 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEA 49
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 80
Score = 71.4 bits (175), Expect = 4e-18
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 36 SSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
SS + +R +R RT T +QL+ L + + P + IA L +
Sbjct: 4 GSSGGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKR 59
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain
variant, DNA binding protein, developmental protein,
disease mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 70.8 bits (174), Expect = 4e-18
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 50 RRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
RR RT FT Q++ LE F N YP + E++A NL
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELD 43
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding
protein, homeodomain, LIM domain; NMR {Rattus
norvegicus} SCOP: a.4.1.1
Length = 66
Score = 70.5 bits (173), Expect = 6e-18
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 48 RQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
+ R RT +QL L +A N PD +E++ T L+
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPR 45
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 70.1 bits (172), Expect = 8e-18
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
+ R RT FT QL+ L+ F N YP E+++ NL
Sbjct: 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTR 49
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 69.2 bits (170), Expect = 2e-17
Identities = 23/40 (57%), Positives = 27/40 (67%)
Query: 52 QRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
FTS QL+ELE F+R YPD+ TREE+AM LTEA
Sbjct: 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEA 41
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor,
structural genomics, loop insertion, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 95
Score = 64.3 bits (156), Expect = 4e-15
Identities = 15/58 (25%), Positives = 22/58 (37%)
Query: 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRETHAYSYNFL 103
R R + + L +E+ F N+YPD + REEIA N +
Sbjct: 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERV 61
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 61.6 bits (150), Expect = 2e-14
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
+ +R RT T QL+ L F N P +E+A + L +
Sbjct: 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQK 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 60.9 bits (148), Expect = 4e-14
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
S + + +QL L+ +F RN++P S E + T L+
Sbjct: 5 SSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTR 50
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 59.4 bits (144), Expect = 2e-13
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 50 RRQRTHFTSQQLQELEATFAR-NRYPDMSTREEIAMWTNLTEA 91
+ + T Q++ LE F + N++PD +T IA LTE
Sbjct: 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEE 45
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 58.9 bits (143), Expect = 2e-13
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 50 RRQRTHFTSQQLQELEATFAR-NRYPDMSTREEIAMWTNLTEA 91
T Q++ LE F + N++PD +T IA LTE
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEE 44
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 61.4 bits (148), Expect = 3e-13
Identities = 12/65 (18%), Positives = 22/65 (33%)
Query: 30 DSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLT 89
+ + +K+ RR R + Q L + R + P RE + N
Sbjct: 96 AGQGGLIEEPTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRA 155
Query: 90 EALRE 94
E ++
Sbjct: 156 ECIQR 160
>1lfb_A Liver transcription factor (LFB1); transcription regulation;
2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 57.9 bits (139), Expect = 9e-13
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRE 94
+K+ RR R + Q L + R + P RE + N E ++
Sbjct: 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQR 54
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 60.4 bits (145), Expect = 1e-12
Identities = 16/74 (21%), Positives = 28/74 (37%)
Query: 21 LSNHNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTRE 80
L + + S S ++ + +K+ RR R + Q L + R + P RE
Sbjct: 114 LFLFPEFSQQSHGPGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEERE 173
Query: 81 EIAMWTNLTEALRE 94
+ N E L+
Sbjct: 174 ALVEECNRAECLQR 187
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 57.7 bits (139), Expect = 4e-12
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 22 SNHNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREE 81
+ N S + S + S+ NS + R+R++RT + LE +F N+ P
Sbjct: 74 AEANLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITL 133
Query: 82 IAMWTNLTE 90
IA N+ +
Sbjct: 134 IAEQLNMEK 142
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 56.2 bits (135), Expect = 1e-11
Identities = 14/63 (22%), Positives = 24/63 (38%)
Query: 29 EDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNL 88
+ + ++R++RT FT Q ++ L A F +N P E+A N
Sbjct: 73 LRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNY 132
Query: 89 TEA 91
Sbjct: 133 DRE 135
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 52.5 bits (126), Expect = 1e-10
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 33 AKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
SS + +K+ RR RT FT QL LE F + +Y R ++A L++
Sbjct: 1 GSSGSSGGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQ 58
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for
eukaryotic structural genomics; NMR {Homo sapiens}
Length = 84
Score = 52.1 bits (125), Expect = 1e-10
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 29 EDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNL 88
+ ++ ++S K K ++++ RT F+S QL L F R +Y + +E++ NL
Sbjct: 2 KQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNL 61
Query: 89 TE 90
+
Sbjct: 62 SY 63
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 51.3 bits (123), Expect = 1e-10
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
T +Q+ L+A+F ++++PD + + T L +
Sbjct: 2 AHHHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARS 46
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 51.9 bits (124), Expect = 6e-10
Identities = 11/56 (19%), Positives = 23/56 (41%)
Query: 35 DSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
+ ++ ++R+R++RT + LE F + P +A NL +
Sbjct: 73 VGALYNEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEK 128
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 48.6 bits (116), Expect = 2e-09
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
+ R+ RT ++S QL L+ F + +Y + R E+A LT+
Sbjct: 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQ 48
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 48.2 bits (115), Expect = 3e-09
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
++R++R FT Q ELE F + RY RE +A LT
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPT 51
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 50.0 bits (119), Expect = 4e-09
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 29 EDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNL 88
E S+ S +N R+R++RT LE+ F + P +A L
Sbjct: 79 ETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQL 138
Query: 89 TE 90
+
Sbjct: 139 EK 140
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein,
transcription regulation, NUC homeobox; 2.6A {Mus
musculus}
Length = 62
Score = 47.7 bits (114), Expect = 4e-09
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 48 RQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
+++ RT F+ QL L+ F + +Y + +E++ NL+
Sbjct: 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSY 44
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 47.2 bits (113), Expect = 6e-09
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 49 QRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
+R+ R F+ Q+ ELE F + RY R+++A LT
Sbjct: 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTS 43
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 46.9 bits (112), Expect = 8e-09
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 50 RRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
R+ RT FT+ QL LE F + +Y ++ R E + +LTE
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTE 41
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 69
Score = 47.0 bits (112), Expect = 8e-09
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 48 RQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
+H + Q+ ELE F+ +Y R +A LTE
Sbjct: 3 HHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTE 45
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1f43_A 1yrn_A*
Length = 61
Score = 46.4 bits (111), Expect = 1e-08
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 47 KRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
++ + ++ + Q LE F R + + +EE+A +T
Sbjct: 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITP 46
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 46.2 bits (110), Expect = 2e-08
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 49 QRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
+R++R F+ Q+ ELE F + +Y RE +A +LT
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTP 43
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 45.6 bits (108), Expect = 5e-08
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 43 TKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
+ ++++ RT FT Q+ ELE F + +Y + R +A +T+A
Sbjct: 11 NRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDA 59
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 44.7 bits (106), Expect = 8e-08
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
+ + + F++ Q ELE F +Y R+ +A L+E
Sbjct: 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSE 48
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 45.1 bits (106), Expect = 2e-07
Identities = 13/68 (19%), Positives = 27/68 (39%)
Query: 24 HNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIA 83
E + ++ SK+ + ++R+RT ++ LE F ++ P + IA
Sbjct: 71 EKWVEEADNNENLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIA 130
Query: 84 MWTNLTEA 91
L +
Sbjct: 131 NQLGLEKD 138
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 43.7 bits (103), Expect = 3e-07
Identities = 21/57 (36%), Positives = 26/57 (45%)
Query: 34 KDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
K + + +RQRT +T Q ELE F NRY R EIA +LTE
Sbjct: 13 KRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTE 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 42.9 bits (101), Expect = 4e-07
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 44 KNSKRQRRQRTHFTSQQLQELEATFAR-NRYPDMSTREEIAMWTNLTE 90
+ R RT + + L L++ YPD ++ +L +
Sbjct: 2 SSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPK 49
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 42.3 bits (100), Expect = 5e-07
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 50 RRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
RR RT FT QL LE F + Y R E+A NL E
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPE 42
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 41.9 bits (99), Expect = 6e-07
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 49 QRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
++R RT F+S+QL L+ F NRY R++++ L E
Sbjct: 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNE 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 42.6 bits (100), Expect = 8e-07
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 36 SSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
+ + RT+FT++QL ELE F N+Y + R EIA L E
Sbjct: 21 PKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNE 75
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 41.9 bits (98), Expect = 1e-06
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 36 SSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
SS +S + Q+ + T Q++ LE +F ++ +P + + + + T L+
Sbjct: 2 SSGSSGAYPDFAPQKFKEK--TQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRR 55
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 42.1 bits (98), Expect = 2e-06
Identities = 9/63 (14%), Positives = 21/63 (33%)
Query: 29 EDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNL 88
+ + + T +QL L++ F R ++P +++A + L
Sbjct: 5 HHHHSSGLEVLFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGL 64
Query: 89 TEA 91
Sbjct: 65 ART 67
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double
helix, helix-turn-helix; NMR {Drosophila melanogaster}
SCOP: a.4.1.1
Length = 68
Score = 40.9 bits (96), Expect = 2e-06
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 49 QRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
RR RT FTS Q+ ELE F + RY +++ L
Sbjct: 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGT 43
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 40.6 bits (95), Expect = 3e-06
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 42 NTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
++ +S + + +QL+ LE++FA+N P + + T +T
Sbjct: 2 SSGSSGPTKYKER--APEQLRALESSFAQNPLPLDEELDRLRSETKMTR 48
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 40.0 bits (94), Expect = 3e-06
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 54 THFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
T F+ Q+ ELE F R +Y + R +A +T+A
Sbjct: 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDA 39
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 40.6 bits (95), Expect = 3e-06
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 41 KNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
+ +RR R +T Q ELE F N Y R E+A +LTE
Sbjct: 12 AIAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTE 61
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 39.8 bits (93), Expect = 7e-06
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
+ R++R ++ QL+ELE +A N++ R +I+ T+L+E
Sbjct: 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSE 48
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain;
protein-DNA complex, transcription/DNA complex; 2.42A
{Mesocricetus auratus}
Length = 63
Score = 38.9 bits (91), Expect = 1e-05
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 50 RRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
+R RT +T QL ELE F N+Y R E+A+ NLTE
Sbjct: 4 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTE 44
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 38.8 bits (90), Expect = 2e-05
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 49 QRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
Q+ + T++QL+ L+A+F + + T LT
Sbjct: 13 QKFKEK--TAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRR 53
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens}
PDB: 2ld5_A*
Length = 73
Score = 38.3 bits (89), Expect = 3e-05
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 45 NSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
+ R++R +T QL+ELE +A N++ R I+ TNL+E
Sbjct: 3 HMLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSE 48
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA;
NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 38.2 bits (89), Expect = 3e-05
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 49 QRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
++R R +T Q ELE F NRY R EIA +LTE
Sbjct: 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTE 43
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 38.7 bits (89), Expect = 7e-05
Identities = 14/71 (19%), Positives = 21/71 (29%)
Query: 20 ELSNHNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTR 79
E S +A ++ R FT Q + L A F N+ P +
Sbjct: 68 EPEFQRMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQ 127
Query: 80 EEIAMWTNLTE 90
I+ L
Sbjct: 128 ITISQQLGLEL 138
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA
complex, HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 36.4 bits (84), Expect = 1e-04
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 37 SSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTE 90
++ + N +++ R++R +T Q ELE F N Y R E+A NLTE
Sbjct: 1 NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTE 54
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 37.2 bits (85), Expect = 1e-04
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 46 SKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEALRE 94
S R R + Q L + R + P RE + N E L+
Sbjct: 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQR 51
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing
factor, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.4.1.1
Length = 76
Score = 33.8 bits (77), Expect = 0.001
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 51 RQRTHFTSQQLQELEATFARNRYPDMSTREEIAMWTNLTEA 91
T +QL L++ F + ++ +++ T L
Sbjct: 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRP 45
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.019
Identities = 6/27 (22%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 59 QQLQELEAT---FARNRYPDMSTREEI 82
Q L++L+A+ +A + P ++ + +
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 30.4 bits (68), Expect = 0.066
Identities = 11/60 (18%), Positives = 22/60 (36%)
Query: 22 SNHNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREE 81
S + S ++ S ++ Q + +T FT ++LQ L F + +
Sbjct: 54 SAAPQGSDSSDSELELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDT 113
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.12
Identities = 6/40 (15%), Positives = 18/40 (45%)
Query: 33 AKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNR 72
D++S + ++ ++ + +Q +++E NR
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens}
SCOP: a.39.1.5
Length = 224
Score = 26.1 bits (57), Expect = 2.0
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 24 HNDSIEDSSAKDSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREE 81
D IED + + + Q +T+FT ++LQ L F + E
Sbjct: 19 SKDKIED---ELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEET 73
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
a.4.1.1
Length = 80
Score = 24.9 bits (54), Expect = 2.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 35 DSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFAR 70
SS S + + +R RT FT++Q +++ A R
Sbjct: 3 SGSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAER 38
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger
homeobox family protein, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: a.4.1.1
Length = 80
Score = 25.0 bits (54), Expect = 3.3
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 35 DSSSNSKNTKNSKRQRRQRTHFTSQQLQELEATFA 69
SS S ++R RT FT++Q + + A A
Sbjct: 3 SGSSGSSAEAGGGIRKRHRTKFTAEQKERMLA-LA 36
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION
transport, ionic channel, membrane, PO potassium
channel, potassium transport, transport; 3.00A {Mus
musculus} PDB: 2e6w_A
Length = 229
Score = 25.6 bits (56), Expect = 3.6
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 38 SNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMS-TREE 81
+ ++ + ++ FT ++LQ L F +N P E
Sbjct: 43 ATVRHRPEALELLEAQSKFTKKELQILYRGF-KNECPSGVVNEET 86
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 25.2 bits (55), Expect = 3.8
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 37 SSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMSTREE 81
+ SK +K+ +Q T+F +++Q+ F R+ RE+
Sbjct: 3 AKTSKLSKDDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQLARED 47
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer,
post-fusion, viral PR; HET: NAG; 3.05A {Human
parainfluenza virus 3}
Length = 490
Score = 25.4 bits (55), Expect = 4.0
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 5 GRILPIEPLIGNIKTELSNHNDSIEDSSAKDSSSNSK 41
+ ++P+ +I EL+ +E+S SN K
Sbjct: 428 NNSVALDPI--DISIELNKAKSDLEESKEWIRRSNQK 462
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 25.2 bits (55), Expect = 4.3
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 37 SSNSKNTKNSKRQRRQRTHFTSQQLQELEATF 68
SNSK + ++T+FT +++Q+ F
Sbjct: 3 KSNSKLKPEVVEELTRKTYFTEKEVQQWYKGF 34
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta,
chaperone, DNA-binding, RE transcription, transcription
regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Length = 110
Score = 25.0 bits (54), Expect = 4.5
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 3/21 (14%)
Query: 70 RNRYPDMSTREEIAMWTNLTE 90
RYP R E+A W +
Sbjct: 85 AGRYP---KRAELARWFGIPL 102
>1g5g_A Fusion protein; NDV, paramyxovirus; HET: NAG BMA; 3.30A {Newcastle
disease virus} SCOP: f.12.1.1 h.3.2.1 PDB: 3maw_A*
Length = 481
Score = 25.4 bits (55), Expect = 4.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 5 GRILPIEPLIGNIKTELSNHNDSIEDSSAKDSSSNSK 41
+++ L +I TEL N N+SI ++ K SNSK
Sbjct: 422 SQVIVTGNL--DISTELGNVNNSISNALDKLEESNSK 456
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos
taurus} SCOP: a.39.1.5
Length = 193
Score = 24.8 bits (54), Expect = 6.3
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 37 SSNSKNTKNSKRQRRQRTHFTSQQLQELEATFARNRYPDMS-TREE 81
NSK + + T FT ++QE F P + EE
Sbjct: 3 KQNSKLRPEVMQDLLESTDFTEHEIQEWYKGF-LRDCPSGHLSMEE 47
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 24.9 bits (55), Expect = 6.9
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 7/24 (29%)
Query: 71 NRYPDMSTREEIAMWTNLTEALRE 94
NRYP+ E L + L
Sbjct: 64 NRYPERDAVE-------LRDELAA 80
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent
transferase-like, structural genomics, joint C
structural genomics, JCSG; HET: TLA; 2.60A
{Burkholderia pseudomallei}
Length = 337
Score = 24.4 bits (54), Expect = 8.6
Identities = 6/26 (23%), Positives = 8/26 (30%), Gaps = 7/26 (26%)
Query: 71 NRYPDMSTREEIAMWTNLTEALRETH 96
NRYP + + L E
Sbjct: 46 NRYPFDAEPR-------VMRKLAEHF 64
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 23.8 bits (50), Expect = 9.4
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 43 TKNSKRQRRQRTHFTSQQLQELEATFAR 70
+ S + RT F+ + L L+ +
Sbjct: 2 SSGSSGALQDRTQFSDRDLATLKKYWDN 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.124 0.338
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,413,537
Number of extensions: 61458
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 94
Length of query: 104
Length of database: 6,701,793
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,775,244
Effective search space: 167133540
Effective search space used: 167133540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)