BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15889
(92 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9U637|PITX_BRABE Pituitary homeobox x OS=Branchiostoma belcheri GN=Ptx PE=2 SV=1
Length = 331
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 54/83 (65%), Gaps = 14/83 (16%)
Query: 3 ELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPD 57
E +A W RVRVWFKNRRAKWRKRERN + +FKNGF FNGLMQ F
Sbjct: 136 EEIAAWTNLTEARVRVWFKNRRAKWRKRERNQLG-------EFKNGFGPHFNGLMQPF-- 186
Query: 58 TDSLYTSAYSSYNNWASKVPSPL 80
D LY+ +YNNWA+KVPSPL
Sbjct: 187 DDGLYSGYSPAYNNWAAKVPSPL 209
>sp|O18400|PITX_DROME Pituitary homeobox homolog Ptx1 OS=Drosophila melanogaster GN=Ptx1
PE=2 SV=2
Length = 509
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 63/96 (65%), Gaps = 17/96 (17%)
Query: 3 ELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPD 57
E +A+W RVRVWFKNRRAKWRKRER AA AA DFK+GF TQF MQ F D
Sbjct: 295 EEIAMWTNLTEARVRVWFKNRRAKWRKRER-NAMNAAVAAADFKSGFGTQF---MQPFAD 350
Query: 58 TDSLYTSAYSSYNNWASKVPSPLGTI----GVNDLG 89
DSLY+S YNNW +KVPSPLGT VN LG
Sbjct: 351 -DSLYSSY--PYNNW-TKVPSPLGTKPFPWPVNPLG 382
>sp|Q6QU75|PITX3_DANRE Pituitary homeobox 3 OS=Danio rerio GN=pitx3 PE=2 SV=1
Length = 293
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 48/78 (61%), Gaps = 16/78 (20%)
Query: 3 ELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPD 57
E +A+W RVRVWFKNRRAKWRKRERN A KNGF QFNGLMQ + D
Sbjct: 91 EEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ------AELCKNGFGAQFNGLMQPYDD 144
Query: 58 TDSLYTSAYSSYNNWASK 75
S Y SYNNWA+K
Sbjct: 145 MYSGY-----SYNNWATK 157
>sp|Q9PWR3|PITX2_XENLA Pituitary homeobox 2 OS=Xenopus laevis GN=pitx2 PE=2 SV=1
Length = 326
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 49/78 (62%), Gaps = 16/78 (20%)
Query: 3 ELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPD 57
E +A+W RVRVWFKNRRAKWRKRERN A KNGF QFNGLMQ +
Sbjct: 125 EEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ------AELCKNGFGPQFNGLMQPY-- 176
Query: 58 TDSLYTSAYSSYNNWASK 75
D +Y S SYNNWA+K
Sbjct: 177 -DDMYPSY--SYNNWAAK 191
>sp|Q9W5Z2|PITX2_DANRE Pituitary homeobox 2 OS=Danio rerio GN=pitx2 PE=2 SV=1
Length = 314
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 47/78 (60%), Gaps = 16/78 (20%)
Query: 3 ELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPD 57
E +A+W RVRVWFKNRRAKWRKRERN A KNGF QFNGLMQ + D
Sbjct: 113 EEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ------AELCKNGFGPQFNGLMQPYDD 166
Query: 58 TDSLYTSAYSSYNNWASK 75
YT YNNWA+K
Sbjct: 167 MYPSYT-----YNNWAAK 179
>sp|Q99NA7|PITX1_RAT Pituitary homeobox 1 OS=Rattus norvegicus GN=Pitx1 PE=2 SV=1
Length = 315
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 56/90 (62%), Gaps = 18/90 (20%)
Query: 1 MGELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDF-KNGFSTQFNGLMQT 54
M E +A+W RVRVWFKNRRAKWRKRERN +D K G+ QF+GL+Q
Sbjct: 118 MREEIAVWTNLTEPRVRVWFKNRRAKWRKRERNQQ-------LDLCKGGYVPQFSGLVQP 170
Query: 55 FPDTDSLYTSAYSSYNNWASK--VPSPLGT 82
+ D +Y +A SYNNWA+K P+PL T
Sbjct: 171 YED---VYAAAGYSYNNWAAKSLAPAPLST 197
>sp|O93385|PITX2_CHICK Pituitary homeobox 2 OS=Gallus gallus GN=PITX2 PE=2 SV=1
Length = 333
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 47/78 (60%), Gaps = 16/78 (20%)
Query: 3 ELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPD 57
E +A+W RVRVWFKNRRAKWRKRERN A KNGF QFNGLMQ + D
Sbjct: 132 EEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ------AELCKNGFGPQFNGLMQPYDD 185
Query: 58 TDSLYTSAYSSYNNWASK 75
Y SYNNWA+K
Sbjct: 186 MYPGY-----SYNNWAAK 198
>sp|Q9R0W1|PITX2_RAT Pituitary homeobox 2 OS=Rattus norvegicus GN=Pitx2 PE=2 SV=1
Length = 324
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 47/78 (60%), Gaps = 16/78 (20%)
Query: 3 ELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPD 57
E +A+W RVRVWFKNRRAKWRKRERN A KNGF QFNGLMQ + D
Sbjct: 123 EEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ------AELCKNGFGPQFNGLMQPYDD 176
Query: 58 TDSLYTSAYSSYNNWASK 75
Y SYNNWA+K
Sbjct: 177 MYPGY-----SYNNWAAK 189
>sp|P56673|PITX1_CHICK Pituitary homeobox 1 OS=Gallus gallus GN=PITX1 PE=2 SV=1
Length = 311
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 54/90 (60%), Gaps = 20/90 (22%)
Query: 1 MGELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDF-KNGFSTQFNGLMQT 54
M E +A+W RVRVWFKNRRAKWRKRERN +D KNG+ QF+GLMQ
Sbjct: 117 MREEIAVWTNLTEPRVRVWFKNRRAKWRKRERNQQ-------MDLCKNGYVPQFSGLMQP 169
Query: 55 FPDTDSLYTSAYSSYNNWASK--VPSPLGT 82
+ D + Y YNNWA+K P+PL T
Sbjct: 170 YDDMYAGYP-----YNNWATKSLTPAPLST 194
>sp|Q9W751|PITX1_XENLA Pituitary homeobox 1 OS=Xenopus laevis GN=pitx1 PE=2 SV=1
Length = 305
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 55/90 (61%), Gaps = 20/90 (22%)
Query: 1 MGELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDF-KNGFSTQFNGLMQT 54
M E +A+W RVRVWFKNRRAKWRKRERN +D KNG+ QF+GLMQ
Sbjct: 107 MREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ-------MDLCKNGYVPQFSGLMQP 159
Query: 55 FPDTDSLYTSAYSSYNNWASK--VPSPLGT 82
+ D +Y A YNNWA+K P+PL T
Sbjct: 160 Y---DEMY--AGYPYNNWATKSLTPAPLST 184
>sp|P97474|PITX2_MOUSE Pituitary homeobox 2 OS=Mus musculus GN=Pitx2 PE=1 SV=2
Length = 317
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 47/78 (60%), Gaps = 16/78 (20%)
Query: 3 ELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPD 57
E +A+W RVRVWFKNRRAKWRKRERN A KNGF QFNGLMQ + D
Sbjct: 116 EEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ------AELCKNGFGPQFNGLMQPYDD 169
Query: 58 TDSLYTSAYSSYNNWASK 75
Y SYNNWA+K
Sbjct: 170 MYPGY-----SYNNWAAK 182
>sp|Q99697|PITX2_HUMAN Pituitary homeobox 2 OS=Homo sapiens GN=PITX2 PE=1 SV=2
Length = 317
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 47/78 (60%), Gaps = 16/78 (20%)
Query: 3 ELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPD 57
E +A+W RVRVWFKNRRAKWRKRERN A KNGF QFNGLMQ + D
Sbjct: 116 EEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ------AELCKNGFGPQFNGLMQPYDD 169
Query: 58 TDSLYTSAYSSYNNWASK 75
Y SYNNWA+K
Sbjct: 170 MYPGY-----SYNNWAAK 182
>sp|P70314|PITX1_MOUSE Pituitary homeobox 1 OS=Mus musculus GN=Pitx1 PE=2 SV=2
Length = 315
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 56/90 (62%), Gaps = 19/90 (21%)
Query: 1 MGELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDF-KNGFSTQFNGLMQT 54
M E +A+W RVRVWFKNRRAKWRKRERN +D K G+ QF+GL+Q
Sbjct: 119 MREEIAVWTNLTEPRVRVWFKNRRAKWRKRERNQQ-------LDLCKGGYVPQFSGLVQP 171
Query: 55 FPDTDSLYTSAYSSYNNWASK--VPSPLGT 82
+ D +Y + Y SYNNWA+K P+PL T
Sbjct: 172 YED---VYAAGY-SYNNWAAKSLAPAPLST 197
>sp|Q9I8K3|PITX3_XENLA Pituitary homeobox 3 OS=Xenopus laevis GN=pitx3 PE=2 SV=1
Length = 292
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 50/86 (58%), Gaps = 18/86 (20%)
Query: 3 ELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPD 57
E +A+W RVRVWFKNRRAKWRKRERN A KN F QFNGLMQ + D
Sbjct: 91 EEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ------AELCKNSFGAQFNGLMQPYDD 144
Query: 58 TDSLYTSAYSSYNNWASK--VPSPLG 81
S Y SYNNWA+K SPL
Sbjct: 145 MYSGY-----SYNNWATKGLATSPLS 165
>sp|P78337|PITX1_HUMAN Pituitary homeobox 1 OS=Homo sapiens GN=PITX1 PE=1 SV=2
Length = 314
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 56/90 (62%), Gaps = 19/90 (21%)
Query: 1 MGELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDF-KNGFSTQFNGLMQT 54
M E +A+W RVRVWFKNRRAKWRKRERN +D K G+ QF+GL+Q
Sbjct: 118 MREEIAVWTNLTEPRVRVWFKNRRAKWRKRERNQQ-------LDLCKGGYVPQFSGLVQP 170
Query: 55 FPDTDSLYTSAYSSYNNWASK--VPSPLGT 82
+ D +Y + Y SYNNWA+K P+PL T
Sbjct: 171 YED---VYAAGY-SYNNWAAKSLAPAPLST 196
>sp|P81062|PITX3_RAT Pituitary homeobox 3 OS=Rattus norvegicus GN=Pitx3 PE=1 SV=2
Length = 302
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 3 ELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPD 57
E +A+W RVRVWFKNRRAKWRKRER+ A K GF+ GL+ + +
Sbjct: 93 EEIAVWTNLTEARVRVWFKNRRAKWRKRERSQQ------AELCKGGFAAPLGGLVPPYEE 146
Query: 58 TDSLYTSAYSSYNNWASKVPSP 79
YT Y NW K +P
Sbjct: 147 VYPGYT-----YGNWPPKALAP 163
>sp|O35160|PITX3_MOUSE Pituitary homeobox 3 OS=Mus musculus GN=Pitx3 PE=1 SV=1
Length = 302
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 3 ELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPD 57
E +A+W RVRVWFKNRRAKWRKRER+ A K GF+ GL+ + +
Sbjct: 93 EEIAVWTNLTEARVRVWFKNRRAKWRKRERSQQ------AELCKGGFAAPLGGLVPPYEE 146
Query: 58 TDSLYTSAYSSYNNWASKVPSP 79
Y SY NW K +P
Sbjct: 147 VYPGY-----SYGNWPPKALAP 163
>sp|O75364|PITX3_HUMAN Pituitary homeobox 3 OS=Homo sapiens GN=PITX3 PE=1 SV=1
Length = 302
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 39/79 (49%), Gaps = 16/79 (20%)
Query: 3 ELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPD 57
E +A+W RVRVWFKNRRAKWRKRER+ A K F+ GL+ + +
Sbjct: 93 EEIAVWTNLTEARVRVWFKNRRAKWRKRERSQQ------AELCKGSFAAPLGGLVPPYEE 146
Query: 58 TDSLYTSAYSSYNNWASKV 76
Y SY NW K
Sbjct: 147 VYPGY-----SYGNWPPKA 160
>sp|P52906|UNC30_CAEEL Homeobox protein unc-30 OS=Caenorhabditis elegans GN=unc-30 PE=2
SV=2
Length = 323
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 3 ELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPD 57
E +A+W+ RVRVWFKNRRAKWRKRERN + L TFP
Sbjct: 143 EEIAVWISLTEPRVRVWFKNRRAKWRKRERNYVIDNGQGTTKVTAQSLDPLGSLQNTFPQ 202
Query: 58 T 58
T
Sbjct: 203 T 203
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 10 RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPDTDS 60
RV+VWF+NRRAKWRKRER +N F+T ++ + P TDS
Sbjct: 196 RVQVWFQNRRAKWRKRERYGKMQEG------RNPFTTAYD--ISVLPRTDS 238
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 10 RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPDTDS 60
RV+VWF+NRRAKWRKRER + +N F+ ++ + P TDS
Sbjct: 196 RVQVWFQNRRAKWRKRER------YGKIQEGRNPFTAAYD--ISVLPRTDS 238
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 10 RVRVWFKNRRAKWRKRERNAMNA 32
RV+VWF+NRRAKWRKRE+ + A
Sbjct: 258 RVQVWFQNRRAKWRKREKAGVQA 280
>sp|P29506|UNC4_CAEEL Homeobox protein unc-4 OS=Caenorhabditis elegans GN=unc-4 PE=1 SV=2
Length = 252
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 1 MGELMALWL-----RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTF 55
M E +A+ L RV+VWF+NRRAKWRKRE+N N ++ D T+ + TF
Sbjct: 117 MREALAMRLDLLESRVQVWFQNRRAKWRKREQN-RNGSSEIKKDDGEQMETK---ALPTF 172
Query: 56 P 56
P
Sbjct: 173 P 173
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
RV+VWF+NRRAKWRKRER
Sbjct: 243 RVQVWFQNRRAKWRKRER 260
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
RV+VWF+NRRAKWRKRER
Sbjct: 257 RVQVWFQNRRAKWRKRER 274
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
RV+VWF+NRRAKWRKRER
Sbjct: 245 RVQVWFQNRRAKWRKRER 262
>sp|Q63087|ALX1_RAT ALX homeobox protein 1 OS=Rattus norvegicus GN=Alx1 PE=2 SV=1
Length = 326
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 10 RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPDTDS 60
RV+VWF+NRRAKWRKRER A K+ F+ ++ + P TDS
Sbjct: 175 RVQVWFQNRRAKWRKRERYGQIQQA------KSHFAATYD--ISVLPRTDS 217
>sp|Q15699|ALX1_HUMAN ALX homeobox protein 1 OS=Homo sapiens GN=ALX1 PE=1 SV=2
Length = 326
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 10 RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPDTDS 60
RV+VWF+NRRAKWRKRER A K+ F+ ++ + P TDS
Sbjct: 175 RVQVWFQNRRAKWRKRERYGQIQQA------KSHFAATYD--ISVLPRTDS 217
>sp|Q8C8B0|ALX1_MOUSE ALX homeobox protein 1 OS=Mus musculus GN=Alx1 PE=1 SV=1
Length = 326
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 10 RVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPDTDS 60
RV+VWF+NRRAKWRKRER A K+ F+ ++ + P TDS
Sbjct: 175 RVQVWFQNRRAKWRKRERYGQIQQA------KSHFAATYD--ISVLPRTDS 217
>sp|Q91574|ALX1_XENLA ALX homeobox protein 1 OS=Xenopus laevis GN=alx1 PE=2 SV=1
Length = 335
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
RV+VWF+NRRAKWRKRER
Sbjct: 184 RVQVWFQNRRAKWRKRER 201
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 10 RVRVWFKNRRAKWRKRERNAMNAAAAA 36
RV+VWF+NRRAKWRK ER A + A
Sbjct: 76 RVQVWFQNRRAKWRKTERGASDQEPGA 102
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 15/18 (83%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
RV+VWF+NRRAKWRKRE+
Sbjct: 371 RVQVWFQNRRAKWRKREK 388
>sp|Q0P031|VSX1_XENLA Visual system homeobox 1 OS=Xenopus laevis GN=vsx1 PE=2 SV=1
Length = 344
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 14/18 (77%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
R++VWF+NRRAKWRKRE+
Sbjct: 193 RIQVWFQNRRAKWRKREK 210
>sp|A2T711|RAX2_PANTR Retina and anterior neural fold homeobox protein 2 OS=Pan
troglodytes GN=RAX2 PE=3 SV=1
Length = 184
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 9 LRVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQF 48
+RV+VWF+NRRAKWR++ER + A AA + F
Sbjct: 69 VRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPF 108
>sp|Q62798|DRGX_RAT Dorsal root ganglia homeobox protein OS=Rattus norvegicus GN=Drgx
PE=2 SV=1
Length = 263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 10 RVRVWFKNRRAKWRKRERNAMNAAAAA 36
RV+VWF+NRRAKWRK ER A + A
Sbjct: 76 RVQVWFQNRRAKWRKTERGASDQEPGA 102
>sp|Q96IS3|RAX2_HUMAN Retina and anterior neural fold homeobox protein 2 OS=Homo sapiens
GN=RAX2 PE=1 SV=1
Length = 184
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 9 LRVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQF 48
+RV+VWF+NRRAKWR++ER + A AA + F
Sbjct: 69 VRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPF 108
>sp|A1YG25|RAX2_PANPA Retina and anterior neural fold homeobox protein 2 OS=Pan paniscus
GN=RAX2 PE=3 SV=1
Length = 184
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 9 LRVRVWFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQF 48
+RV+VWF+NRRAKWR++ER + A AA + F
Sbjct: 69 VRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPF 108
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 15/18 (83%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
RV+VWF+NRRAKWRKRE+
Sbjct: 373 RVQVWFQNRRAKWRKREK 390
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 10 RVRVWFKNRRAKWRKRERNAMNAAAAA 36
RV+VWF+NRRAKWRK ER A + A
Sbjct: 76 RVQVWFQNRRAKWRKTERGASDQEPGA 102
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 15/18 (83%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
RV+VWF+NRRAKWRKRE+
Sbjct: 375 RVQVWFQNRRAKWRKREK 392
>sp|O08934|UNC4_MOUSE Homeobox protein unc-4 homolog OS=Mus musculus GN=Uncx PE=2 SV=2
Length = 530
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 5/31 (16%)
Query: 1 MGELMALWL-----RVRVWFKNRRAKWRKRE 26
M E +AL L RV+VWF+NRRAKWRK+E
Sbjct: 138 MREALALRLDLVESRVQVWFQNRRAKWRKKE 168
>sp|Q9I9A3|VSX2_ORYLA Visual system homeobox 2 OS=Oryzias latipes GN=vsx2 PE=2 SV=1
Length = 393
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 14/18 (77%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
R++VWF+NRRAKWRKRE+
Sbjct: 205 RIQVWFQNRRAKWRKREK 222
>sp|O42477|VSX2_DANRE Visual system homeobox 2 OS=Danio rerio GN=vsx2 PE=2 SV=3
Length = 393
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 14/18 (77%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
R++VWF+NRRAKWRKRE+
Sbjct: 208 RIQVWFQNRRAKWRKREK 225
>sp|Q9IAL1|VSX2_CHICK Visual system homeobox 2 OS=Gallus gallus GN=VSX2 PE=2 SV=1
Length = 377
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 14/18 (77%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
R++VWF+NRRAKWRKRE+
Sbjct: 210 RIQVWFQNRRAKWRKREK 227
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 15/18 (83%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
RV+VWF+NRRAKWRKRE+
Sbjct: 255 RVQVWFQNRRAKWRKREK 272
>sp|Q9GMA3|VSX1_BOVIN Visual system homeobox 1 OS=Bos taurus GN=VSX1 PE=2 SV=1
Length = 365
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 14/18 (77%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
R++VWF+NRRAKWRKRE+
Sbjct: 207 RIQVWFQNRRAKWRKREK 224
>sp|P58304|VSX2_HUMAN Visual system homeobox 2 OS=Homo sapiens GN=VSX2 PE=1 SV=1
Length = 361
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 14/18 (77%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
R++VWF+NRRAKWRKRE+
Sbjct: 191 RIQVWFQNRRAKWRKREK 208
>sp|A6NJT0|UNC4_HUMAN Homeobox protein unc-4 homolog OS=Homo sapiens GN=UNCX PE=2 SV=1
Length = 531
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 5/31 (16%)
Query: 1 MGELMALWL-----RVRVWFKNRRAKWRKRE 26
M E +AL L RV+VWF+NRRAKWRK+E
Sbjct: 134 MREALALRLDLVESRVQVWFQNRRAKWRKKE 164
>sp|Q61412|VSX2_MOUSE Visual system homeobox 2 OS=Mus musculus GN=Vsx2 PE=1 SV=1
Length = 361
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 14/18 (77%), Positives = 18/18 (100%)
Query: 10 RVRVWFKNRRAKWRKRER 27
R++VWF+NRRAKWRKRE+
Sbjct: 191 RIQVWFQNRRAKWRKREK 208
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 25/31 (80%), Gaps = 2/31 (6%)
Query: 9 LRVRVWFKNRRAKWRKRERNAMNAAAAAAVD 39
+RV+VWF+NRRAKWR++E+ M+A+A D
Sbjct: 184 VRVQVWFQNRRAKWRRQEK--MDASAVKLHD 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.129 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,454,827
Number of Sequences: 539616
Number of extensions: 1158574
Number of successful extensions: 3907
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3373
Number of HSP's gapped (non-prelim): 523
length of query: 92
length of database: 191,569,459
effective HSP length: 62
effective length of query: 30
effective length of database: 158,113,267
effective search space: 4743398010
effective search space used: 4743398010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)