Query psy15889
Match_columns 92
No_of_seqs 114 out of 1120
Neff 6.6
Searched_HMMs 29240
Date Sat Aug 17 00:11:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nzz_A Penetratin conjugated G 99.4 5.9E-14 2E-18 75.0 2.0 21 9-29 1-21 (37)
2 3a03_A T-cell leukemia homeobo 99.1 4.1E-12 1.4E-16 72.5 -1.0 25 1-25 26-55 (56)
3 2ecb_A Zinc fingers and homeob 99.1 2.6E-13 8.8E-18 84.9 -6.8 29 1-29 40-73 (89)
4 1x2m_A LAG1 longevity assuranc 99.1 1.4E-12 4.8E-17 77.2 -3.4 24 1-24 30-58 (64)
5 2cue_A Paired box protein PAX6 99.1 1.2E-11 4E-16 75.2 0.1 28 2-29 37-69 (80)
6 1puf_A HOX-1.7, homeobox prote 99.0 1.5E-11 5E-16 74.2 -0.4 27 2-28 43-74 (77)
7 3a01_A Homeodomain-containing 99.0 8.3E-12 2.9E-16 78.0 -1.6 32 1-32 46-82 (93)
8 3nau_A Zinc fingers and homeob 99.0 1.4E-11 4.7E-16 73.3 -0.8 25 1-25 33-62 (66)
9 1uhs_A HOP, homeodomain only p 99.0 1.2E-11 4.1E-16 73.7 -1.2 26 2-27 32-62 (72)
10 3a02_A Homeobox protein arista 99.0 7.3E-12 2.5E-16 72.2 -2.1 26 2-27 29-59 (60)
11 2hi3_A Homeodomain-only protei 99.0 1.5E-11 5.2E-16 73.5 -1.0 26 2-27 33-63 (73)
12 2cqx_A LAG1 longevity assuranc 99.0 7.3E-12 2.5E-16 75.1 -2.6 25 1-25 38-67 (72)
13 2h1k_A IPF-1, pancreatic and d 99.0 1.4E-11 4.9E-16 71.6 -1.6 25 2-26 33-62 (63)
14 1yz8_P Pituitary homeobox 2; D 99.0 2.2E-11 7.5E-16 71.8 -1.0 28 1-28 32-64 (68)
15 1nk2_P Homeobox protein VND; h 99.0 2.6E-11 8.9E-16 73.1 -0.7 27 2-28 39-70 (77)
16 1ahd_P Antennapedia protein mu 99.0 1.4E-11 4.9E-16 72.7 -1.9 26 2-27 32-62 (68)
17 2l9r_A Homeobox protein NKX-3. 99.0 7.2E-12 2.5E-16 74.9 -3.4 27 1-27 33-64 (69)
18 2ecc_A Homeobox and leucine zi 99.0 2.9E-11 9.9E-16 73.7 -1.2 27 1-27 32-63 (76)
19 1fjl_A Paired protein; DNA-bin 99.0 4.3E-11 1.5E-15 72.7 -0.5 26 2-27 48-78 (81)
20 2da4_A Hypothetical protein DK 99.0 3.4E-11 1.2E-15 73.0 -1.0 25 1-25 41-70 (80)
21 2dmq_A LIM/homeobox protein LH 99.0 4.4E-11 1.5E-15 72.4 -0.7 27 2-28 37-68 (80)
22 2dms_A Homeobox protein OTX2; 99.0 1.8E-11 6.2E-16 74.2 -2.4 27 2-28 37-68 (80)
23 1zq3_P PRD-4, homeotic bicoid 99.0 4.4E-11 1.5E-15 70.5 -0.7 27 2-28 32-63 (68)
24 1b8i_A Ultrabithorax, protein 99.0 1.7E-11 5.9E-16 74.7 -2.6 27 1-27 49-80 (81)
25 2dmp_A Zinc fingers and homeob 99.0 2.2E-12 7.5E-17 80.2 -6.8 29 1-29 42-75 (89)
26 2da5_A Zinc fingers and homeob 99.0 1.7E-11 5.9E-16 73.7 -2.7 26 2-27 37-67 (75)
27 2hdd_A Protein (engrailed home 98.9 3.2E-11 1.1E-15 69.6 -1.7 23 2-24 33-60 (61)
28 1ig7_A Homeotic protein MSX-1; 98.9 4.7E-11 1.6E-15 68.1 -1.2 23 2-24 30-57 (58)
29 2dmt_A Homeobox protein BARH-l 98.9 2.3E-11 7.9E-16 73.8 -2.6 26 1-26 46-76 (80)
30 1ftt_A TTF-1 HD, thyroid trans 98.9 3E-11 1E-15 71.2 -2.2 27 2-28 32-63 (68)
31 2e1o_A Homeobox protein PRH; D 98.9 6E-11 2E-15 70.3 -1.0 26 2-27 37-67 (70)
32 2kt0_A Nanog, homeobox protein 98.9 8.7E-12 3E-16 76.1 -4.8 26 2-27 52-82 (84)
33 2dmu_A Homeobox protein goosec 98.9 5.5E-11 1.9E-15 70.3 -1.2 26 2-27 37-67 (70)
34 2vi6_A Homeobox protein nanog; 98.9 2.2E-11 7.5E-16 70.5 -3.3 24 2-25 33-61 (62)
35 1jgg_A Segmentation protein EV 98.9 5.1E-11 1.7E-15 68.6 -1.8 24 2-25 31-59 (60)
36 2da3_A Alpha-fetoprotein enhan 98.9 5.4E-11 1.8E-15 71.8 -1.9 25 2-26 47-76 (80)
37 2ly9_A Zinc fingers and homeob 98.9 2.9E-11 9.9E-16 72.2 -3.4 26 2-27 36-66 (74)
38 3nar_A ZHX1, zinc fingers and 98.9 6.8E-11 2.3E-15 74.1 -2.1 30 1-30 54-88 (96)
39 2cra_A Homeobox protein HOX-B1 98.9 3.6E-11 1.2E-15 71.2 -3.2 25 2-26 37-66 (70)
40 2l7z_A Homeobox protein HOX-A1 98.9 6.5E-11 2.2E-15 70.7 -2.2 27 1-27 36-67 (73)
41 1b72_B Protein (PBX1); homeodo 98.9 1.2E-10 4E-15 71.5 -1.1 30 1-30 33-67 (87)
42 2da1_A Alpha-fetoprotein enhan 98.9 8.2E-11 2.8E-15 69.5 -1.9 26 2-27 37-67 (70)
43 2m0c_A Homeobox protein arista 98.9 2.9E-11 9.8E-16 72.1 -4.0 27 2-28 39-70 (75)
44 2da2_A Alpha-fetoprotein enhan 98.9 6.5E-11 2.2E-15 69.9 -2.7 25 2-26 37-66 (70)
45 1k61_A Mating-type protein alp 98.8 1.1E-10 3.7E-15 67.1 -1.9 24 2-25 31-59 (60)
46 3rkq_A Homeobox protein NKX-2. 98.8 1.1E-10 3.8E-15 66.2 -2.1 22 2-23 32-58 (58)
47 2e19_A Transcription factor 8; 98.8 5.2E-11 1.8E-15 69.9 -3.7 24 1-24 32-60 (64)
48 2djn_A Homeobox protein DLX-5; 98.8 5.6E-11 1.9E-15 70.4 -3.7 25 2-26 37-66 (70)
49 2dn0_A Zinc fingers and homeob 98.8 7.8E-11 2.7E-15 70.8 -3.3 27 1-27 37-68 (76)
50 1x2n_A Homeobox protein pknox1 98.8 2.5E-10 8.6E-15 68.0 -1.2 26 1-26 39-69 (73)
51 2k40_A Homeobox expressed in E 98.8 1.8E-10 6.3E-15 67.5 -1.9 26 2-27 31-61 (67)
52 1puf_B PRE-B-cell leukemia tra 98.8 3.8E-10 1.3E-14 67.1 -1.2 27 2-28 34-65 (73)
53 1bw5_A ISL-1HD, insulin gene e 98.8 1.2E-10 4.1E-15 68.1 -3.3 25 2-26 33-62 (66)
54 1le8_B Mating-type protein alp 98.7 3.2E-10 1.1E-14 69.3 -2.2 27 1-27 34-65 (83)
55 2dmn_A Homeobox protein TGIF2L 98.7 5.1E-10 1.8E-14 68.5 -1.3 27 1-27 39-70 (83)
56 1akh_A Protein (mating-type pr 98.7 3.3E-10 1.1E-14 65.2 -2.3 22 2-23 35-61 (61)
57 1du6_A PBX1, homeobox protein 98.7 1.6E-10 5.5E-15 67.1 -3.8 24 1-24 35-63 (64)
58 2da6_A Hepatocyte nuclear fact 98.7 1.2E-09 4.1E-14 69.8 -0.2 21 9-29 69-89 (102)
59 2xsd_C POU domain, class 3, tr 98.7 4.5E-10 1.5E-14 76.6 -2.5 27 1-27 128-159 (164)
60 3k2a_A Homeobox protein MEIS2; 98.7 7.1E-10 2.4E-14 65.4 -1.9 27 1-27 30-61 (67)
61 2cuf_A FLJ21616 protein; homeo 98.6 3.3E-09 1.1E-13 66.1 -0.7 20 9-28 64-83 (95)
62 2lk2_A Homeobox protein TGIF1; 98.5 1.2E-08 4E-13 63.8 -0.4 27 1-27 37-68 (89)
63 2d5v_A Hepatocyte nuclear fact 98.4 4.4E-09 1.5E-13 71.1 -3.7 28 1-28 126-158 (164)
64 1wi3_A DNA-binding protein SAT 98.2 5.8E-08 2E-12 58.1 -2.0 21 1-21 37-62 (71)
65 2da7_A Zinc finger homeobox pr 98.1 2E-07 6.7E-12 55.9 -1.7 19 2-20 35-58 (71)
66 1lfb_A Liver transcription fac 98.0 6.8E-08 2.3E-12 61.1 -4.6 21 9-29 72-92 (99)
67 1etf_B REV peptide; complex (R 31.5 19 0.00066 17.0 1.0 13 16-28 7-19 (26)
68 3cm8_B Peptide from RNA-direct 27.4 22 0.00074 17.3 0.8 10 79-88 2-11 (30)
69 3izc_q 60S ribosomal protein R 27.0 27 0.00093 16.2 1.1 11 19-29 2-12 (25)
70 2x7l_M HIV REV; nuclear export 25.3 58 0.002 20.6 2.8 14 16-29 38-51 (115)
71 3iz5_q 60S ribosomal protein L 25.1 31 0.0011 16.0 1.1 10 19-28 2-11 (25)
No 1
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=99.41 E-value=5.9e-14 Score=74.96 Aligned_cols=21 Identities=48% Similarity=1.107 Sum_probs=18.8
Q ss_pred cccccccccchhHHHHHHHHH
Q psy15889 9 LRVRVWFKNRRAKWRKRERNA 29 (92)
Q Consensus 9 ~qVkiWFQNRRaK~rr~~~~~ 29 (92)
+||+||||||||||||.+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999988764
No 2
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.11 E-value=4.1e-12 Score=72.47 Aligned_cols=25 Identities=40% Similarity=0.860 Sum_probs=22.4
Q ss_pred Chhhhhhh-----cccccccccchhHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKR 25 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~ 25 (92)
+|++||.. .+|+|||||||+||||+
T Consensus 26 ~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 26 ERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 36788888 99999999999999985
No 3
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.10 E-value=2.6e-13 Score=84.93 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=24.7
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRERNA 29 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~~~ 29 (92)
+|++||.. +||+|||||||+|||+.++..
T Consensus 40 ~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 40 ELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHhCcChHHCeecccccchHHHHHHHHh
Confidence 47888888 999999999999999866543
No 4
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.10 E-value=1.4e-12 Score=77.17 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.7
Q ss_pred Chhhhhhh-----cccccccccchhHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRK 24 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr 24 (92)
+|++||.+ +||||||||||+|+|+
T Consensus 30 ~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 30 RLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 37889988 9999999999999886
No 5
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.08 E-value=1.2e-11 Score=75.16 Aligned_cols=28 Identities=50% Similarity=0.919 Sum_probs=25.2
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRERNA 29 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~~~ 29 (92)
|++||.. .+|+|||||||+||||+.+..
T Consensus 37 r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 37 RERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 6788888 999999999999999988765
No 6
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.05 E-value=1.5e-11 Score=74.22 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=24.3
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRERN 28 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~~ 28 (92)
|++||.. .+|+|||||||+|||+..+.
T Consensus 43 r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 43 RYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 6788888 99999999999999998764
No 7
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.05 E-value=8.3e-12 Score=78.02 Aligned_cols=32 Identities=34% Similarity=0.686 Sum_probs=25.5
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRERNAMNA 32 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~~~~~~ 32 (92)
+|++||.. .+|+|||||||+|||++.....+.
T Consensus 46 ~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~ 82 (93)
T 3a01_A 46 ERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREA 82 (93)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHH
Confidence 37788888 999999999999999988765443
No 8
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.04 E-value=1.4e-11 Score=73.33 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=22.6
Q ss_pred Chhhhhhh-----cccccccccchhHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKR 25 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~ 25 (92)
+|++||.. ++|+|||||||+|||+.
T Consensus 33 er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 33 EVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 47889988 99999999999999974
No 9
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.03 E-value=1.2e-11 Score=73.66 Aligned_cols=26 Identities=38% Similarity=0.638 Sum_probs=23.4
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
|++||.. .+|+|||||||+||||..+
T Consensus 32 r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 32 LCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 6788888 9999999999999999764
No 10
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.03 E-value=7.3e-12 Score=72.16 Aligned_cols=26 Identities=58% Similarity=1.117 Sum_probs=20.5
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
|++||.. .+|+|||||||+||||+++
T Consensus 29 r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 29 REELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 6788888 9999999999999999765
No 11
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.03 E-value=1.5e-11 Score=73.45 Aligned_cols=26 Identities=38% Similarity=0.638 Sum_probs=23.5
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
|++||.. .+|+|||||||+||||..+
T Consensus 33 r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 33 LCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 6788888 9999999999999999775
No 12
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.02 E-value=7.3e-12 Score=75.14 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=22.1
Q ss_pred Chhhhhhh-----cccccccccchhHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKR 25 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~ 25 (92)
+|++||.+ ++|+|||||||+|||+.
T Consensus 38 ~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 38 RLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 37889888 99999999999999863
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.01 E-value=1.4e-11 Score=71.60 Aligned_cols=25 Identities=40% Similarity=0.934 Sum_probs=22.3
Q ss_pred hhhhhhh-----cccccccccchhHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRE 26 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~ 26 (92)
|++||.. .+|+|||||||+||||.+
T Consensus 33 r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 33 RVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 6788888 999999999999999863
No 14
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.00 E-value=2.2e-11 Score=71.78 Aligned_cols=28 Identities=71% Similarity=1.260 Sum_probs=24.4
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRERN 28 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~~ 28 (92)
+|++||.. .+|+|||||||+|||+.++.
T Consensus 32 ~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 32 TREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp TTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 47788888 99999999999999997763
No 15
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.00 E-value=2.6e-11 Score=73.11 Aligned_cols=27 Identities=30% Similarity=0.612 Sum_probs=23.8
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRERN 28 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~~ 28 (92)
|++||.. .+|+|||||||+|+|+....
T Consensus 39 r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 39 REHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 6788888 99999999999999997664
No 16
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.00 E-value=1.4e-11 Score=72.75 Aligned_cols=26 Identities=35% Similarity=0.815 Sum_probs=23.3
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
|++||.. .+|+|||||||+|||+..+
T Consensus 32 r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 32 RIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 6788888 9999999999999999765
No 17
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.99 E-value=7.2e-12 Score=74.88 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=23.4
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
+|++||.+ ++|+|||||||+||||+..
T Consensus 33 ~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 33 ERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred HHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 37788888 9999999999999998654
No 18
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.98 E-value=2.9e-11 Score=73.67 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=23.7
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
+|++||.. +||+|||||||+|||+..-
T Consensus 32 er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 32 DYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 47889988 9999999999999998643
No 19
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=98.97 E-value=4.3e-11 Score=72.71 Aligned_cols=26 Identities=46% Similarity=0.810 Sum_probs=23.4
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
|++||.. .+|+|||||||+||||+.+
T Consensus 48 r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 48 REELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 6788888 9999999999999999765
No 20
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3.4e-11 Score=72.97 Aligned_cols=25 Identities=40% Similarity=0.437 Sum_probs=22.2
Q ss_pred Chhhhhhh-----cccccccccchhHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKR 25 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~ 25 (92)
+|++||.+ .+|+|||||||+|||+.
T Consensus 41 ~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 41 KIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 36788888 99999999999999984
No 21
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=4.4e-11 Score=72.36 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.8
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRERN 28 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~~ 28 (92)
|++||.. .+|+|||||||+||||+...
T Consensus 37 r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 37 LKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 6788888 99999999999999997653
No 22
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.96 E-value=1.8e-11 Score=74.22 Aligned_cols=27 Identities=56% Similarity=0.852 Sum_probs=23.9
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRERN 28 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~~ 28 (92)
|++||.. .+|+|||||||+|||++.+.
T Consensus 37 r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 37 REEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred HHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 6788888 99999999999999997653
No 23
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.96 E-value=4.4e-11 Score=70.55 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=23.9
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRERN 28 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~~ 28 (92)
|++||.. .+|+|||||||+|+|++...
T Consensus 32 r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 32 LADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 6788888 99999999999999997764
No 24
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=98.96 E-value=1.7e-11 Score=74.69 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=22.9
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
+|++||.. .+|+|||||||+||||+.+
T Consensus 49 ~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 49 RRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 37788888 9999999999999998643
No 25
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=2.2e-12 Score=80.17 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=24.6
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRERNA 29 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~~~ 29 (92)
+|++||.. ++|+|||||||+|||+.++..
T Consensus 42 ~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 42 ELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred HHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 37788888 999999999999999876643
No 26
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.7e-11 Score=73.72 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.3
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
|++||.. ++|+|||||||+|||++.+
T Consensus 37 r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 37 LDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred HHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 6788888 9999999999999999665
No 27
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=98.95 E-value=3.2e-11 Score=69.64 Aligned_cols=23 Identities=35% Similarity=0.741 Sum_probs=21.1
Q ss_pred hhhhhhh-----cccccccccchhHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRK 24 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr 24 (92)
|++||.. .+|+|||||||+||||
T Consensus 33 r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 33 RQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 6788888 9999999999999987
No 28
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=98.94 E-value=4.7e-11 Score=68.14 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=21.1
Q ss_pred hhhhhhh-----cccccccccchhHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRK 24 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr 24 (92)
|++||.. .+|+|||||||+|+||
T Consensus 30 r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 30 RAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 6788888 9999999999999997
No 29
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2.3e-11 Score=73.82 Aligned_cols=26 Identities=38% Similarity=0.713 Sum_probs=22.7
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRE 26 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~ 26 (92)
+|++||.. .+|+|||||||+||||..
T Consensus 46 ~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 46 DRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 37788888 999999999999999854
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.93 E-value=3e-11 Score=71.25 Aligned_cols=27 Identities=30% Similarity=0.689 Sum_probs=23.8
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRERN 28 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~~ 28 (92)
|++||.. .+|+|||||||+|||+..+.
T Consensus 32 r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 32 REHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 6788888 99999999999999997653
No 31
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.93 E-value=6e-11 Score=70.25 Aligned_cols=26 Identities=42% Similarity=0.855 Sum_probs=22.9
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
|++||.. .+|+|||||||+|||+...
T Consensus 37 r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 37 RKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 6788888 9999999999999999653
No 32
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=98.93 E-value=8.7e-12 Score=76.11 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=22.9
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
|++||.. .+|+|||||||+||||..+
T Consensus 52 r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 52 MQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 6788888 9999999999999998653
No 33
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=5.5e-11 Score=70.32 Aligned_cols=26 Identities=54% Similarity=0.903 Sum_probs=22.8
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
|++||.. .+|+|||||||+||||...
T Consensus 37 r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 37 REQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHCCCHHHeehccccccccccccCC
Confidence 6788888 9999999999999998543
No 34
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=98.91 E-value=2.2e-11 Score=70.54 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.7
Q ss_pred hhhhhhh-----cccccccccchhHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKR 25 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~ 25 (92)
|++||.. .+|+|||||||+||||.
T Consensus 33 r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 33 MQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 6788888 99999999999999984
No 35
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.91 E-value=5.1e-11 Score=68.55 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.7
Q ss_pred hhhhhhh-----cccccccccchhHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKR 25 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~ 25 (92)
|++||.. .+|+|||||||+|+||+
T Consensus 31 r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 31 RCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6788888 99999999999999985
No 36
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.90 E-value=5.4e-11 Score=71.79 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=22.3
Q ss_pred hhhhhhh-----cccccccccchhHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRE 26 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~ 26 (92)
|++||.. .+|+|||||||+||||+.
T Consensus 47 r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 47 LDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 6788888 999999999999999854
No 37
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.89 E-value=2.9e-11 Score=72.19 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=23.0
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
|++||.. .+|+|||||||+||||.+.
T Consensus 36 r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 36 IIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 6788888 9999999999999998654
No 38
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=98.88 E-value=6.8e-11 Score=74.10 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=24.7
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRERNAM 30 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~~~~ 30 (92)
+|++||.. .+|+|||||||+||||+...-.
T Consensus 54 ~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~~ 88 (96)
T 3nar_A 54 EYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWY 88 (96)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHhCCCHHHeeecchhhhhHhhhhcccHH
Confidence 36788888 9999999999999999764433
No 39
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.88 E-value=3.6e-11 Score=71.23 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.3
Q ss_pred hhhhhhh-----cccccccccchhHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRE 26 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~ 26 (92)
|++||.. .+|+|||||||+||||..
T Consensus 37 r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 37 RRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 6788888 999999999999999854
No 40
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=98.88 E-value=6.5e-11 Score=70.74 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.1
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
+|++||.. .+|+|||||||+||||...
T Consensus 36 ~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 36 KRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp HHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 36788888 9999999999999998543
No 41
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=98.88 E-value=1.2e-10 Score=71.45 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=25.4
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRERNAM 30 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~~~~ 30 (92)
+|++||.. .||+|||||||+|+|+......
T Consensus 33 ~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 33 AKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccccc
Confidence 36788888 9999999999999999776543
No 42
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.87 E-value=8.2e-11 Score=69.50 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.8
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
|++||.. .+|+|||||||+||||..+
T Consensus 37 r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 37 IKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 6788888 9999999999999998643
No 43
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.87 E-value=2.9e-11 Score=72.11 Aligned_cols=27 Identities=67% Similarity=1.143 Sum_probs=23.5
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRERN 28 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~~ 28 (92)
|++||.. .+|+|||||||+||||.++.
T Consensus 39 r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 39 REQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 6788887 99999999999999996653
No 44
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.85 E-value=6.5e-11 Score=69.95 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.2
Q ss_pred hhhhhhh-----cccccccccchhHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRE 26 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~ 26 (92)
|++||.. .+|+|||||||+||||..
T Consensus 37 r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 37 FEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 6788888 999999999999999854
No 45
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=98.84 E-value=1.1e-10 Score=67.09 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.4
Q ss_pred hhhhhhh-----cccccccccchhHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKR 25 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~ 25 (92)
|++||.. .+|+|||||||+|+|+.
T Consensus 31 r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 31 LENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 6788888 99999999999999873
No 46
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=98.83 E-value=1.1e-10 Score=66.20 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=19.7
Q ss_pred hhhhhhh-----cccccccccchhHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWR 23 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~r 23 (92)
|++||.. .+|+|||||||+|+|
T Consensus 32 r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 32 RDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 6788888 999999999999985
No 47
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=5.2e-11 Score=69.94 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=20.6
Q ss_pred Chhhhhhh-----cccccccccchhHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRK 24 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr 24 (92)
+|++||.+ ++|+|||||||+|.++
T Consensus 32 ~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 32 ELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 37788888 9999999999998654
No 48
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=5.6e-11 Score=70.36 Aligned_cols=25 Identities=32% Similarity=0.635 Sum_probs=22.1
Q ss_pred hhhhhhh-----cccccccccchhHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRE 26 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~ 26 (92)
|++||.. .+|+|||||||+||||..
T Consensus 37 r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 37 RAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 6788888 999999999999998853
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=7.8e-11 Score=70.83 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.5
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
+|++||.. .+|+|||||||+||||..+
T Consensus 37 ~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 37 EVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred HHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 37788888 9999999999999998654
No 50
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.81 E-value=2.5e-10 Score=67.95 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.7
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRE 26 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~ 26 (92)
+|++||.. .||+|||||||+|+|+..
T Consensus 39 ~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 39 EKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 36788888 999999999999999854
No 51
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=98.80 E-value=1.8e-10 Score=67.51 Aligned_cols=26 Identities=42% Similarity=0.703 Sum_probs=22.8
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
|++||.. .+|+|||||||+|+|+..+
T Consensus 31 r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 31 LEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 6788888 9999999999999998654
No 52
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=98.78 E-value=3.8e-10 Score=67.14 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.5
Q ss_pred hhhhhhh-----cccccccccchhHHHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRERN 28 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~~~ 28 (92)
|++||.. .+|+|||||||+|+|+....
T Consensus 34 r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 34 KEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6788888 99999999999999986654
No 53
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.78 E-value=1.2e-10 Score=68.13 Aligned_cols=25 Identities=40% Similarity=0.670 Sum_probs=21.9
Q ss_pred hhhhhhh-----cccccccccchhHHHHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWRKRE 26 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~rr~~ 26 (92)
|++||.. .+|+|||||||+|||+..
T Consensus 33 r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 33 KEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 6788888 999999999999998853
No 54
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.75 E-value=3.2e-10 Score=69.31 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.3
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
+|++||.. .||+|||||||+|||+...
T Consensus 34 ~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 34 GLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 36788888 9999999999999998654
No 55
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=98.74 E-value=5.1e-10 Score=68.48 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.3
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
+|++||.. .||+|||||||+|+|+...
T Consensus 39 ~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 39 EKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 37888888 9999999999999988654
No 56
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=98.74 E-value=3.3e-10 Score=65.15 Aligned_cols=22 Identities=45% Similarity=0.709 Sum_probs=19.1
Q ss_pred hhhhhhh-----cccccccccchhHHH
Q psy15889 2 GELMALW-----LRVRVWFKNRRAKWR 23 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRaK~r 23 (92)
|++||.. .+|+|||||||+|+|
T Consensus 35 r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 35 KEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 6788888 999999999999986
No 57
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.73 E-value=1.6e-10 Score=67.14 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.1
Q ss_pred Chhhhhhh-----cccccccccchhHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRK 24 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr 24 (92)
+|++||.. .||+|||||||+|+||
T Consensus 35 ~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 35 AKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 36788888 9999999999999886
No 58
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.2e-09 Score=69.80 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=18.3
Q ss_pred cccccccccchhHHHHHHHHH
Q psy15889 9 LRVRVWFKNRRAKWRKRERNA 29 (92)
Q Consensus 9 ~qVkiWFQNRRaK~rr~~~~~ 29 (92)
++|+|||||||+|+|++.+..
T Consensus 69 ~~V~~WFqNRR~k~kr~~~~~ 89 (102)
T 2da6_A 69 VRVYNWFANRRKEEAFRQKLA 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeeecchHHHHHHhhHhh
Confidence 389999999999999987755
No 59
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=98.71 E-value=4.5e-10 Score=76.61 Aligned_cols=27 Identities=37% Similarity=0.330 Sum_probs=23.8
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
+|++||.. ++|+|||||||+||||+.+
T Consensus 128 ~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 128 EITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred HHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 37788888 9999999999999999665
No 60
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.69 E-value=7.1e-10 Score=65.41 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=22.7
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
+|++||.. .||+|||||||+|+|+...
T Consensus 30 ~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 30 QKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 37788888 9999999999999998544
No 61
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.61 E-value=3.3e-09 Score=66.12 Aligned_cols=20 Identities=40% Similarity=0.778 Sum_probs=17.9
Q ss_pred cccccccccchhHHHHHHHH
Q psy15889 9 LRVRVWFKNRRAKWRKRERN 28 (92)
Q Consensus 9 ~qVkiWFQNRRaK~rr~~~~ 28 (92)
.+|+|||||||+|+|++.+.
T Consensus 64 ~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 64 LKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 67999999999999997764
No 62
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.50 E-value=1.2e-08 Score=63.78 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.3
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRER 27 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~ 27 (92)
+|++||.. +||++||||||+|+++...
T Consensus 37 ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 37 EKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 47788888 8999999999999988654
No 63
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=98.44 E-value=4.4e-09 Score=71.14 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=22.3
Q ss_pred Chhhhhhh-----cccccccccchhHHHHHHHH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAKWRKRERN 28 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK~rr~~~~ 28 (92)
+|++||.. ++|+|||||||+|+|+....
T Consensus 126 ~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 126 LQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred HHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 37788888 99999999999999986553
No 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.21 E-value=5.8e-08 Score=58.13 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=18.1
Q ss_pred Chhhhhhh-----cccccccccchhH
Q psy15889 1 MGELMALW-----LRVRVWFKNRRAK 21 (92)
Q Consensus 1 ~R~eLA~~-----~qVkiWFQNRRaK 21 (92)
+|++||.+ .+|||||||||.-
T Consensus 37 ~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 37 AIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHhhccceee
Confidence 37889888 9999999999964
No 65
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=2e-07 Score=55.94 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=16.2
Q ss_pred hhhhhhh-----cccccccccchh
Q psy15889 2 GELMALW-----LRVRVWFKNRRA 20 (92)
Q Consensus 2 R~eLA~~-----~qVkiWFQNRRa 20 (92)
+++||.. ..|||||||||+
T Consensus 35 i~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 35 LLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHhhccc
Confidence 5667777 999999999997
No 66
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.02 E-value=6.8e-08 Score=61.10 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=16.2
Q ss_pred cccccccccchhHHHHHHHHH
Q psy15889 9 LRVRVWFKNRRAKWRKRERNA 29 (92)
Q Consensus 9 ~qVkiWFQNRRaK~rr~~~~~ 29 (92)
++|+|||||||+|+++..+.+
T Consensus 72 ~qV~vWFqNRR~k~k~k~~~~ 92 (99)
T 1lfb_A 72 VRVYNWFANRRKEEAFRHKLA 92 (99)
T ss_dssp HHHHHHHHHHHHTTSCCC---
T ss_pred ceeeeccHHHHHHHHHhchhh
Confidence 789999999999988766544
No 67
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=31.51 E-value=19 Score=17.00 Aligned_cols=13 Identities=54% Similarity=1.252 Sum_probs=9.5
Q ss_pred ccchhHHHHHHHH
Q psy15889 16 KNRRAKWRKRERN 28 (92)
Q Consensus 16 QNRRaK~rr~~~~ 28 (92)
.|||-+||..+..
T Consensus 7 RnRRRRWR~Rq~q 19 (26)
T 1etf_B 7 RNRRRRWRERQRA 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4888899876653
No 68
>3cm8_B Peptide from RNA-directed RNA polymerase catalytic subunit; protein-peptide complex, nucleotide-binding, nucleotidyltransferase; 2.90A {Influenza a virus}
Probab=27.39 E-value=22 Score=17.33 Aligned_cols=10 Identities=50% Similarity=0.916 Sum_probs=8.1
Q ss_pred CCCCCCCCCC
Q psy15889 79 PLGTIGVNDL 88 (92)
Q Consensus 79 P~~~~~~~~~ 88 (92)
||++|++||.
T Consensus 2 ~~~~m~inp~ 11 (30)
T 3cm8_B 2 PLGSMDVNPT 11 (30)
T ss_pred CccccccCcc
Confidence 7888888874
No 69
>3izc_q 60S ribosomal protein RPL41 (L41E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_q 3u5e_n 3u5i_n 4b6a_n
Probab=26.99 E-value=27 Score=16.21 Aligned_cols=11 Identities=55% Similarity=1.060 Sum_probs=6.4
Q ss_pred hhHHHHHHHHH
Q psy15889 19 RAKWRKRERNA 29 (92)
Q Consensus 19 RaK~rr~~~~~ 29 (92)
|.||++.....
T Consensus 2 r~KWrKKR~rR 12 (25)
T 3izc_q 2 RAKWRKKRTRR 12 (26)
T ss_dssp CCSHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 56777655433
No 70
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=25.29 E-value=58 Score=20.59 Aligned_cols=14 Identities=50% Similarity=1.168 Sum_probs=11.0
Q ss_pred ccchhHHHHHHHHH
Q psy15889 16 KNRRAKWRKRERNA 29 (92)
Q Consensus 16 QNRRaK~rr~~~~~ 29 (92)
.|||-+||..++.-
T Consensus 38 RNRRRRWR~RQrQI 51 (115)
T 2x7l_M 38 RNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 68999999877654
No 71
>3iz5_q 60S ribosomal protein L41 (L41E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_q
Probab=25.06 E-value=31 Score=16.01 Aligned_cols=10 Identities=50% Similarity=1.069 Sum_probs=5.9
Q ss_pred hhHHHHHHHH
Q psy15889 19 RAKWRKRERN 28 (92)
Q Consensus 19 RaK~rr~~~~ 28 (92)
|.||++....
T Consensus 2 r~KW~KKR~r 11 (25)
T 3iz5_q 2 RAKWKKKRMR 11 (26)
T ss_dssp CCSHHHHHHH
T ss_pred chHHHHHHHH
Confidence 5677765543
Done!