RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15889
(92 letters)
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 40.2 bits (94), Expect = 1e-06
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 10 RVRVWFKNRRAKWRKRER 27
R++VWF NRRAKWR+ E+
Sbjct: 44 RIQVWFSNRRAKWRREEK 61
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 39.8 bits (93), Expect = 1e-06
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 10 RVRVWFKNRRAKWRKRER 27
+RVWF+N+R K +KR
Sbjct: 46 VIRVWFQNKRCKDKKRSI 63
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 39.6 bits (92), Expect = 2e-06
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 10 RVRVWFKNRRAKWRKRER 27
+V++WF+NRR K +KRER
Sbjct: 70 QVKIWFQNRRMKQKKRER 87
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 39.0 bits (91), Expect = 3e-06
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 10 RVRVWFKNRRAKWRKRERN 28
+V++WF+NRR K +K ++
Sbjct: 56 QVKIWFQNRRMKMKKINKD 74
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 38.9 bits (90), Expect = 4e-06
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 10 RVRVWFKNRRAKWRKRERNAM 30
+V WF NRR + ++R A
Sbjct: 58 KVYNWFANRRKEIKRRANIAA 78
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 38.0 bits (88), Expect = 6e-06
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 10 RVRVWFKNRRAKWRKRERNAMN 31
+V++WFKNRR + + + +
Sbjct: 44 QVKIWFKNRRRRHKIQSDQHKD 65
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 37.6 bits (87), Expect = 1e-05
Identities = 6/19 (31%), Positives = 15/19 (78%)
Query: 10 RVRVWFKNRRAKWRKRERN 28
+V++WF+N R K +++ ++
Sbjct: 45 QVKIWFQNHRYKMKRQAKD 63
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 36.7 bits (85), Expect = 2e-05
Identities = 8/15 (53%), Positives = 14/15 (93%)
Query: 10 RVRVWFKNRRAKWRK 24
++++WF+NRR KW+K
Sbjct: 40 QIKIWFQNRRMKWKK 54
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 36.4 bits (84), Expect = 2e-05
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 10 RVRVWFKNRRAKWRKR 25
++VWF+NRR K +++
Sbjct: 42 TIKVWFQNRRMKDKRQ 57
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 36.4 bits (84), Expect = 2e-05
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 10 RVRVWFKNRRAKWRK 24
++ +WF+NRR K +K
Sbjct: 44 QITIWFQNRRVKEKK 58
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 36.4 bits (84), Expect = 3e-05
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 10 RVRVWFKNRRAKWRKRER 27
R++VWF+NRRA+ RK+
Sbjct: 45 RIQVWFQNRRARLRKQHT 62
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 36.0 bits (83), Expect = 3e-05
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 10 RVRVWFKNRRAKWRK 24
+V+ WF+NRRAKWR+
Sbjct: 43 QVKTWFQNRRAKWRR 57
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 36.5 bits (84), Expect = 3e-05
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 10 RVRVWFKNRRAKWRKRERN 28
+ + WFK R A+WR+ E
Sbjct: 45 QTQKWFKQRLAEWRRSEGL 63
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 36.1 bits (83), Expect = 3e-05
Identities = 17/17 (100%), Positives = 17/17 (100%)
Query: 10 RVRVWFKNRRAKWRKRE 26
RVRVWFKNRRAKWRKRE
Sbjct: 44 RVRVWFKNRRAKWRKRE 60
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 36.0 bits (83), Expect = 4e-05
Identities = 8/15 (53%), Positives = 14/15 (93%)
Query: 10 RVRVWFKNRRAKWRK 24
+V++WF+NRRAK ++
Sbjct: 43 QVKIWFQNRRAKAKR 57
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 35.5 bits (82), Expect = 5e-05
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 10 RVRVWFKNRRAKWRK 24
++ WF+ RR + +
Sbjct: 37 SIQRWFRQRRNQEKP 51
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 35.1 bits (80), Expect = 1e-04
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 10 RVRVWFKNRRAKWRKRER 27
RV WF NRR + R +
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 34.6 bits (79), Expect = 2e-04
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 10 RVRVWFKNRRAKWRKRERNAMNAA 33
+V WF N+R +++K A
Sbjct: 47 QVSNWFGNKRIRYKKNIGKFQEEA 70
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 32.7 bits (74), Expect = 0.001
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 10 RVRVWFKNRRAKWRKRER 27
+V++WF+N R K ++ +
Sbjct: 52 QVKIWFQNHRYKTKRAQN 69
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 32.4 bits (74), Expect = 0.001
Identities = 4/14 (28%), Positives = 11/14 (78%)
Query: 10 RVRVWFKNRRAKWR 23
+++ WF++RR + +
Sbjct: 45 KIQCWFRHRRNQDK 58
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 31.8 bits (72), Expect = 0.001
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 10 RVRVWFKNRRAKWR 23
+VRVWF N+R + +
Sbjct: 40 QVRVWFINKRMRSK 53
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 31.7 bits (72), Expect = 0.001
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 10 RVRVWFKNRRAKWRK 24
+++ W NRR K +
Sbjct: 44 QIKNWVSNRRRKEKT 58
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 31.0 bits (70), Expect = 0.003
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 10 RVRVWFKNRRAKWRKRE 26
VRVWF NRR + ++ +
Sbjct: 42 VVRVWFCNRRQREKRVK 58
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 31.1 bits (70), Expect = 0.004
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 10 RVRVWFKNRRAKWRKR 25
VRVWF NRR K ++
Sbjct: 51 VVRVWFCNRRQKGKRS 66
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 30.6 bits (69), Expect = 0.004
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 10 RVRVWFKNRRAK 21
++++WF+N RAK
Sbjct: 42 QIKIWFQNARAK 53
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 30.9 bits (69), Expect = 0.004
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 3 ELMALWLRVRVWFKNRRAKWRKRER 27
+ + WF ++ +E
Sbjct: 40 QTKLTRREIDAWFTEKKKSKALKEE 64
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 30.1 bits (67), Expect = 0.010
Identities = 3/16 (18%), Positives = 8/16 (50%)
Query: 10 RVRVWFKNRRAKWRKR 25
+ +F+N+R +
Sbjct: 51 TIIKFFQNQRYHVKHS 66
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 30.0 bits (67), Expect = 0.012
Identities = 2/16 (12%), Positives = 6/16 (37%)
Query: 10 RVRVWFKNRRAKWRKR 25
+++W N +
Sbjct: 64 VLKIWMHNNKNSGPSS 79
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 28.2 bits (63), Expect = 0.045
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 10 RVRVWFKNRRAKWRK 24
+V WF N R + +
Sbjct: 48 QVNNWFINARRRILQ 62
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 27.6 bits (61), Expect = 0.055
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 10 RVRVWFKNRRAKWRK 24
+RVWF NRR K ++
Sbjct: 41 VIRVWFSNRRQKEKR 55
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 27.4 bits (60), Expect = 0.097
Identities = 3/31 (9%), Positives = 7/31 (22%)
Query: 1 MGELMALWLRVRVWFKNRRAKWRKRERNAMN 31
+ WF + R + +
Sbjct: 37 EQITGLPRPEIIQWFGDTRYALKHGQLKWFR 67
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 26.4 bits (58), Expect = 0.14
Identities = 4/10 (40%), Positives = 5/10 (50%)
Query: 10 RVRVWFKNRR 19
V +F N R
Sbjct: 41 TVSNFFMNAR 50
>d1sraa_ a.39.1.3 (A:) C-terminal (EC) domain of
BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId:
9606]}
Length = 151
Score = 24.6 bits (53), Expect = 1.8
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 3 ELMALWLRVRVWFKNR-RAKWRKRERN 28
EL LR+R W KN + + E N
Sbjct: 7 ELTEFPLRMRDWLKNVLVTLYERDEDN 33
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus
thermophilus [TaxId: 274]}
Length = 59
Score = 23.1 bits (50), Expect = 2.9
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 16 KNRRAKWRKRERNAMNAAAAAAV 38
K + +K R+ R + +A +
Sbjct: 7 KKKTSKARRDARRSHHALTPPTL 29
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 58
Score = 22.7 bits (49), Expect = 3.7
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 16 KNRRAKWRKRERNAMNAAAAAAV 38
K + +K ++ R + +A A +
Sbjct: 7 KKKTSKSKRDMRRSHHALTAPNL 29
>d2ibaa2 d.96.1.4 (A:137-295) Urate oxidase (uricase) {Aspergillus
flavus [TaxId: 5059]}
Length = 159
Score = 23.2 bits (50), Expect = 5.1
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 20 AKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPDTDSL 61
A W+ + + + + F ++T ++TF + +S
Sbjct: 48 ATWQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDNSA 89
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP
oxidase) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 205
Score = 22.9 bits (48), Expect = 6.8
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 3/74 (4%)
Query: 14 WFKNRRAKWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPDTDSLYTSAYSSYNNWA 73
WF + R+ A+ ++ + +G + L + S + +
Sbjct: 19 WFNEAKEDPRETLPEAI---TFSSAELPSGRVSSRILLFKELDHRGFTIYSNWGTSRKAH 75
Query: 74 SKVPSPLGTIGVND 87
+P I
Sbjct: 76 DIATNPNAAIVFFW 89
>d1n1ta1 b.29.1.15 (A:413-634) Trypanosoma sialidase, C-terminal
domain {Trypanosoma rangeli [TaxId: 5698]}
Length = 222
Score = 23.1 bits (50), Expect = 7.2
Identities = 11/51 (21%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 21 KWRKRERNAMNAAAAAAVDFKNGFSTQFNGLMQTFPDTDSLYTSAYSSYNN 71
W ++A A A NG G +P T Y N
Sbjct: 23 VWED-VYRCVDANVANAERVPNGLKFNGVGGGAVWPVARQGQTRRYQFANY 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.129 0.408
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 349,214
Number of extensions: 13132
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 50
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)