BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15890
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W751|PITX1_XENLA Pituitary homeobox 1 OS=Xenopus laevis GN=pitx1 PE=2 SV=1
Length = 305
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 19/80 (23%)
Query: 32 LDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFN 91
L+ ++++ CPY PP +PY++Y CN SS+ASLRLK+KQHS F
Sbjct: 244 LNSAMSSTGCPYGPPGSPYTVYRD-------------TCN---SSLASLRLKSKQHSTFG 287
Query: 92 YTSITPPVSSANNRAACQYS 111
Y+S+ P SS N ACQY+
Sbjct: 288 YSSLQSPASSLN---ACQYN 304
>sp|P56673|PITX1_CHICK Pituitary homeobox 1 OS=Gallus gallus GN=PITX1 PE=2 SV=1
Length = 311
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 25/112 (22%)
Query: 2 LPTGMTAPLTGSASPAGRRSAL--LMCLWVAELDGSVAAATCPYVPPTTPYSMYTHRPAS 59
+P+GM SA P S L + + + L+ ++++ CPY PP +PYS+Y
Sbjct: 223 MPSGMGH----SAVPGMANSGLNNINNISGSSLNSAMSSPACPYGPPGSPYSVYRD---- 274
Query: 60 SDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYS 111
CN SS+ASL LK+KQHS+F Y+S+ P SS N ACQY+
Sbjct: 275 ---------TCN---SSLASLALKSKQHSSFGYSSLQSPGSSLN---ACQYN 311
>sp|P70314|PITX1_MOUSE Pituitary homeobox 1 OS=Mus musculus GN=Pitx1 PE=2 SV=2
Length = 315
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 19/80 (23%)
Query: 32 LDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFN 91
L+ +++ CPY P +PYS+Y CN SS+ASLRLK+KQHS+F
Sbjct: 254 LNSAMSPGACPYGTPASPYSVYRD-------------TCN---SSLASLRLKSKQHSSFG 297
Query: 92 YTSITPPVSSANNRAACQYS 111
Y + P S N ACQY+
Sbjct: 298 YGGLQGPASGLN---ACQYN 314
>sp|Q99NA7|PITX1_RAT Pituitary homeobox 1 OS=Rattus norvegicus GN=Pitx1 PE=2 SV=1
Length = 315
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 19/80 (23%)
Query: 32 LDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFN 91
L+ +++ CPY P +PYS+Y CN SS+ASLRLK+KQHS+F
Sbjct: 254 LNSAMSPGACPYGTPASPYSVYRD-------------TCN---SSLASLRLKSKQHSSFG 297
Query: 92 YTSITPPVSSANNRAACQYS 111
Y + P S N ACQY+
Sbjct: 298 YGGLQGPASGLN---ACQYN 314
>sp|P78337|PITX1_HUMAN Pituitary homeobox 1 OS=Homo sapiens GN=PITX1 PE=1 SV=2
Length = 314
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 19/80 (23%)
Query: 32 LDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFN 91
L+ +++ CPY P +PYS+Y CN SS+ASLRLK+KQHS+F
Sbjct: 253 LNSAMSPGACPYGTPASPYSVYRD-------------TCN---SSLASLRLKSKQHSSFG 296
Query: 92 YTSITPPVSSANNRAACQYS 111
Y + P S N ACQY+
Sbjct: 297 YGGLQGPASGLN---ACQYN 313
>sp|P97474|PITX2_MOUSE Pituitary homeobox 2 OS=Mus musculus GN=Pitx2 PE=1 SV=2
Length = 317
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 41/71 (57%), Gaps = 20/71 (28%)
Query: 41 CPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVS 100
CPY PPT PY +R CN SS+ASLRLKAKQHS+F Y S+ P
Sbjct: 262 CPYAPPTPPY---VYRDT-----------CN---SSLASLRLKAKQHSSFGYASVQNP-- 302
Query: 101 SANNRAACQYS 111
A+N +ACQY+
Sbjct: 303 -ASNLSACQYA 312
>sp|Q99697|PITX2_HUMAN Pituitary homeobox 2 OS=Homo sapiens GN=PITX2 PE=1 SV=2
Length = 317
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 41/71 (57%), Gaps = 20/71 (28%)
Query: 41 CPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVS 100
CPY PPT PY +R CN SS+ASLRLKAKQHS+F Y S+ P
Sbjct: 262 CPYAPPTPPY---VYRDT-----------CN---SSLASLRLKAKQHSSFGYASVQNP-- 302
Query: 101 SANNRAACQYS 111
A+N +ACQY+
Sbjct: 303 -ASNLSACQYA 312
>sp|Q9W5Z2|PITX2_DANRE Pituitary homeobox 2 OS=Danio rerio GN=pitx2 PE=2 SV=1
Length = 314
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 41/71 (57%), Gaps = 20/71 (28%)
Query: 41 CPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVS 100
CPY PPT PY +R CN SS+ASLRLKAKQHS+F Y S+ P
Sbjct: 259 CPYAPPTPPY---VYRDT-----------CN---SSLASLRLKAKQHSSFGYASVQNP-- 299
Query: 101 SANNRAACQYS 111
A+N +ACQY+
Sbjct: 300 -ASNLSACQYA 309
>sp|Q9R0W1|PITX2_RAT Pituitary homeobox 2 OS=Rattus norvegicus GN=Pitx2 PE=2 SV=1
Length = 324
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 41/71 (57%), Gaps = 20/71 (28%)
Query: 41 CPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVS 100
CPY PPT PY +R CN SS+ASLRLKAKQHS+F Y S+ P
Sbjct: 269 CPYAPPTPPY---VYRDT-----------CN---SSLASLRLKAKQHSSFGYASVQNP-- 309
Query: 101 SANNRAACQYS 111
A+N +ACQY+
Sbjct: 310 -ASNLSACQYA 319
>sp|O93385|PITX2_CHICK Pituitary homeobox 2 OS=Gallus gallus GN=PITX2 PE=2 SV=1
Length = 333
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 39/70 (55%), Gaps = 20/70 (28%)
Query: 41 CPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVS 100
CPY PPT PY +R CN SS+ASLRLKAKQHS+F Y S+ P S
Sbjct: 278 CPYAPPTPPY---VYRDT-----------CN---SSLASLRLKAKQHSSFGYASVQNPAS 320
Query: 101 SANNRAACQY 110
N +ACQY
Sbjct: 321 ---NLSACQY 327
>sp|Q9PWR3|PITX2_XENLA Pituitary homeobox 2 OS=Xenopus laevis GN=pitx2 PE=2 SV=1
Length = 326
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 41/75 (54%), Gaps = 20/75 (26%)
Query: 36 VAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSI 95
V + CPY PPT PY +R CN SS+ASLRLKAKQHS+F Y ++
Sbjct: 266 VPTSACPYAPPTPPY---VYRDT-----------CN---SSLASLRLKAKQHSSFGYATV 308
Query: 96 TPPVSSANNRAACQY 110
P S N +ACQY
Sbjct: 309 QTPGS---NLSACQY 320
>sp|Q6QU75|PITX3_DANRE Pituitary homeobox 3 OS=Danio rerio GN=pitx3 PE=2 SV=1
Length = 293
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 20/77 (25%)
Query: 35 SVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTS 94
+V+AA CPY PY MY CN SS+ASLRLKAKQH+NF Y +
Sbjct: 232 AVSAAACPYATTAGPY-MYRD-------------TCN---SSLASLRLKAKQHANFAYPA 274
Query: 95 ITPPVSSANNRAACQYS 111
+ PVS N + CQY+
Sbjct: 275 VQNPVS---NLSPCQYA 288
>sp|Q9I8K3|PITX3_XENLA Pituitary homeobox 3 OS=Xenopus laevis GN=pitx3 PE=2 SV=1
Length = 292
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 20/79 (25%)
Query: 32 LDGSVAAATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFN 91
L +V+A+ CPY +PY MY CN SS+ASLRLKAKQH+NF
Sbjct: 228 LTSAVSASACPYASTASPY-MYRD-------------TCN---SSLASLRLKAKQHANFT 270
Query: 92 YTSITPPVSSANNRAACQY 110
Y ++ P A+N + CQY
Sbjct: 271 YPAVQTP---ASNLSPCQY 286
>sp|O75364|PITX3_HUMAN Pituitary homeobox 3 OS=Homo sapiens GN=PITX3 PE=1 SV=1
Length = 302
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 4/44 (9%)
Query: 70 CNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYSDE 113
CN SS+ASLRLKAKQH++F+Y ++ P +A N + CQY+ E
Sbjct: 260 CN---SSLASLRLKAKQHASFSYPAVHGPPPAA-NLSPCQYAVE 299
>sp|O18400|PITX_DROME Pituitary homeobox homolog Ptx1 OS=Drosophila melanogaster GN=Ptx1
PE=2 SV=2
Length = 509
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 14/84 (16%)
Query: 38 AATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYT---S 94
A CPY P PY MY ++++P + MSSSIA+LRLKAKQH++ + S
Sbjct: 432 GAPCPYTTPANPY-MYR---SAAEP-----CMSSSMSSSIATLRLKAKQHASAGFGSPYS 482
Query: 95 ITPPVSSANNRA--ACQYSDESVT 116
PVS +N+ ACQY+ VT
Sbjct: 483 APSPVSRSNSAGLSACQYTGVGVT 506
>sp|O35160|PITX3_MOUSE Pituitary homeobox 3 OS=Mus musculus GN=Pitx3 PE=1 SV=1
Length = 302
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Query: 70 CNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYSDE 113
CN SS+ASLRLKAKQH++F+Y ++ A N + CQY+ E
Sbjct: 260 CN---SSLASLRLKAKQHASFSYPAVP-GPPPAANLSPCQYAVE 299
>sp|P81062|PITX3_RAT Pituitary homeobox 3 OS=Rattus norvegicus GN=Pitx3 PE=1 SV=2
Length = 302
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Query: 70 CNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYSDE 113
CN SS+ASLRLKAKQH++F+Y ++ A N + CQY+ E
Sbjct: 260 CN---SSLASLRLKAKQHASFSYPAVP-GPPPAANLSPCQYAVE 299
>sp|Q9U637|PITX_BRABE Pituitary homeobox x OS=Branchiostoma belcheri GN=Ptx PE=2 SV=1
Length = 331
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 38/78 (48%), Gaps = 26/78 (33%)
Query: 39 ATCPYVPPTTPYSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQH-----SNFNYT 93
A CPY P PY+ +CN SSIA+LRLKAKQH S+F+Y
Sbjct: 270 APCPYASPGQPYAYR--------------EQCN---SSIAALRLKAKQHSTSVASSFSYP 312
Query: 94 SITPPVSSANNRAACQYS 111
S PV +ACQY+
Sbjct: 313 S---PVRQ-QTLSACQYA 326
>sp|O31762|BBEX_BACSU Bacillibactin exporter OS=Bacillus subtilis (strain 168) GN=ymfD
PE=1 SV=2
Length = 402
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 9 PLTGSASPA-GRRSALLMCLWVAELDGSVAAATCPYVPPTTPYSM 52
P+ G S GR+ LL CL +A L G+VAA Y+ PY+M
Sbjct: 55 PIAGYLSDRFGRKKILLPCLLIAGLGGAVAAFASTYM--KNPYAM 97
>sp|Q9IKD1|SPIKE_CVRSD Spike glycoprotein OS=Rat coronavirus (strain 681) GN=S PE=3 SV=1
Length = 1360
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 30 AELDGSVAAATCPYVPPTTPYSMYTHRPASSD-PSLSRVAECNVMSSSIAS 79
AE +V A+ CP P+T YS T +P S++ P+ + ECNV +S S
Sbjct: 468 AEACFTVGASYCPCAKPSTVYSCVTGKPKSANCPTGTSNRECNVQASGFKS 518
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 67 VAECNVMSSSIASLRLKAKQH 87
+ + N SSSIASLR+KAK+H
Sbjct: 303 LEDTNQRSSSIASLRMKAKEH 323
>sp|P40974|PUO_KOCRO Putrescine oxidase OS=Kocuria rosea GN=puo PE=1 SV=1
Length = 478
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 1 MLPTGMTAPLTGSASPAGRRSALLMCLWVAELDGSVA--AATCPYVPP 46
+ P G TGS PAG + + M VA LDG VA AT P+ P
Sbjct: 100 LAPDGTRHTYTGSMFPAGESTIVEMEKLVALLDGLVAEIGATEPWAHP 147
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.123 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,235,752
Number of Sequences: 539616
Number of extensions: 1447172
Number of successful extensions: 4265
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 4217
Number of HSP's gapped (non-prelim): 58
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)