Query psy15890
Match_columns 126
No_of_seqs 43 out of 45
Neff 1.8
Searched_HMMs 29240
Date Sat Aug 17 00:15:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f06_A Extracellular ligand-bi 19.1 28 0.00097 25.4 0.4 34 4-37 8-41 (371)
2 2ll2_A GAP junction alpha-1 pr 14.7 54 0.0018 18.6 0.0 11 80-90 5-15 (26)
3 4gnr_A ABC transporter substra 8.5 80 0.0027 22.4 0.1 31 4-34 10-40 (353)
4 2f8e_A VPG protein; RNA-depend 8.1 92 0.0032 17.7 0.3 8 79-86 12-19 (26)
5 3a7p_A Autophagy protein 16; c 7.7 86 0.0029 23.6 0.0 20 73-92 3-22 (152)
6 3td9_A Branched chain amino ac 7.6 1.1E+02 0.0036 21.8 0.4 31 4-34 19-49 (366)
7 1jdp_A NPR-C, atrial natriuret 5.4 2.8E+02 0.0096 20.4 1.7 32 4-35 12-43 (441)
8 4f11_A Gamma-aminobutyric acid 4.8 2.2E+02 0.0075 20.9 0.8 32 4-35 17-50 (433)
9 3m4w_E Sigma-E factor negative 4.7 2.6E+02 0.0089 19.5 1.1 16 3-18 14-29 (96)
10 3l7h_A RE64145P, roadblock; LC 4.4 2.1E+02 0.0073 19.2 0.4 13 76-88 66-78 (97)
No 1
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=19.12 E-value=28 Score=25.38 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=25.0
Q ss_pred CCCccccccCCCcchhhHHHHHhhhhhhccCcCC
Q psy15890 4 TGMTAPLTGSASPAGRRSALLMCLWVAELDGSVA 37 (126)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~~l~~a~l~~avs 37 (126)
-|+..||||..+..|+....-.-|++.+.|+.+.
T Consensus 8 IG~~~plSG~~a~~G~~~~~g~~la~~~~nggi~ 41 (371)
T 4f06_A 8 VGVIGTMSGPYALFGKNYKMGIDAWVAEHGNKVA 41 (371)
T ss_dssp EEEEECCSSTTHHHHHHHHHHHHHHHHHHCSEET
T ss_pred EEEEeCCcCchHHhHHHHHHHHHHHHHHhCCCCC
Confidence 4788999999988887655555567777776544
No 2
>2ll2_A GAP junction alpha-1 protein; membrane protein; NMR {Homo sapiens}
Probab=14.65 E-value=54 Score=18.63 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=8.4
Q ss_pred ceecccccCCC
Q psy15890 80 LRLKAKQHSNF 90 (126)
Q Consensus 80 LRLKAKQHs~f 90 (126)
=|+|-||+..|
T Consensus 5 drvKGk~~P~~ 15 (26)
T 2ll2_A 5 DRVKGKSDPYH 15 (26)
Confidence 38999998843
No 3
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=8.48 E-value=80 Score=22.37 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=21.9
Q ss_pred CCCccccccCCCcchhhHHHHHhhhhhhccC
Q psy15890 4 TGMTAPLTGSASPAGRRSALLMCLWVAELDG 34 (126)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~~l~~a~l~~ 34 (126)
-|+..||||..+..|+...--.-|+..++|.
T Consensus 10 IG~~~plsG~~a~~G~~~~~g~~lAv~~iN~ 40 (353)
T 4gnr_A 10 IGFNFEESGSLAAYGTAEQKGAQLAVDEINA 40 (353)
T ss_dssp EEEEECCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCcCchhHhHHHHHHHHHHHHHHHHh
Confidence 3788999999998887554444555666654
No 4
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=8.12 E-value=92 Score=17.71 Aligned_cols=8 Identities=50% Similarity=0.671 Sum_probs=6.1
Q ss_pred hceecccc
Q psy15890 79 SLRLKAKQ 86 (126)
Q Consensus 79 SLRLKAKQ 86 (126)
-||+|||-
T Consensus 12 plkvkak~ 19 (26)
T 2f8e_A 12 PLKVKAKL 19 (26)
T ss_pred cceeeecc
Confidence 58888883
No 5
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=7.71 E-value=86 Score=23.59 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=0.0
Q ss_pred ccccchhceecccccCCCcc
Q psy15890 73 MSSSIASLRLKAKQHSNFNY 92 (126)
Q Consensus 73 msSSIASLRLKAKQHs~f~Y 92 (126)
|..||..=|+||||.-.-.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (152)
T 3a7p_A 3 MGNFIITERKKAKEERSNPQ 22 (152)
T ss_dssp --------------------
T ss_pred cchHHHHHHHHHHHhhcCCc
Confidence 66899999999999643333
No 6
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=7.62 E-value=1.1e+02 Score=21.77 Aligned_cols=31 Identities=23% Similarity=0.150 Sum_probs=22.3
Q ss_pred CCCccccccCCCcchhhHHHHHhhhhhhccC
Q psy15890 4 TGMTAPLTGSASPAGRRSALLMCLWVAELDG 34 (126)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~~l~~a~l~~ 34 (126)
-|+..||||..+..|+...--.-+...++|.
T Consensus 19 iG~~~plsG~~a~~g~~~~~g~~~a~~~in~ 49 (366)
T 3td9_A 19 IAVILPMTGGISAFGRMVWEGIQIAHEEKPT 49 (366)
T ss_dssp EEEEECCSSTTHHHHHHHHHHHHHHHHHCCE
T ss_pred EEEEECCcCcchhcCHHHHHHHHHHHHHhhh
Confidence 3788999999988887655445555566664
No 7
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=5.39 E-value=2.8e+02 Score=20.42 Aligned_cols=32 Identities=13% Similarity=0.006 Sum_probs=21.9
Q ss_pred CCCccccccCCCcchhhHHHHHhhhhhhccCc
Q psy15890 4 TGMTAPLTGSASPAGRRSALLMCLWVAELDGS 35 (126)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~l~~l~~a~l~~a 35 (126)
-|+..|+||...-.|++...-+-|...++|..
T Consensus 12 IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~ 43 (441)
T 1jdp_A 12 VLVLLPQDDSYLFSLTRVRPAIEYALRSVEGN 43 (441)
T ss_dssp EEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-
T ss_pred EEEEcCCCCCcccchhhhHHHHHHHHHHHHhC
Confidence 47788999988777776555555666667643
No 8
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=4.85 E-value=2.2e+02 Score=20.87 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=23.2
Q ss_pred CCCccccccCCC--cchhhHHHHHhhhhhhccCc
Q psy15890 4 TGMTAPLTGSAS--PAGRRSALLMCLWVAELDGS 35 (126)
Q Consensus 4 ~~~~~~~~~~~~--~~~~~~~~l~~l~~a~l~~a 35 (126)
-|+..||||..+ ..|+....-+-|...++|..
T Consensus 17 IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~ 50 (433)
T 4f11_A 17 IMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE 50 (433)
T ss_dssp EEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc
Confidence 477889999877 77776665666666777754
No 9
>3m4w_E Sigma-E factor negative regulatory protein; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli}
Probab=4.68 E-value=2.6e+02 Score=19.54 Aligned_cols=16 Identities=44% Similarity=0.640 Sum_probs=11.0
Q ss_pred CCCCccccccCCCcch
Q psy15890 3 PTGMTAPLTGSASPAG 18 (126)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (126)
|.--|-|+.|+++|..
T Consensus 14 PVLqTlP~~GsasPVS 29 (96)
T 3m4w_E 14 PVFNTLPMMGKASPVS 29 (96)
T ss_dssp GGGCSSCTTCTTCCCC
T ss_pred ceeeeeccCCccccee
Confidence 4445778888888753
No 10
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=4.36 E-value=2.1e+02 Score=19.23 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=10.9
Q ss_pred cchhceecccccC
Q psy15890 76 SIASLRLKAKQHS 88 (126)
Q Consensus 76 SIASLRLKAKQHs 88 (126)
-+--||++-|.|-
T Consensus 66 el~fLRiRTkk~E 78 (97)
T 3l7h_A 66 DMTFLRVRSKKHE 78 (97)
T ss_dssp CEEEEEEEESSCE
T ss_pred CeEEEEEEeCCcE
Confidence 5668999999984
Done!