RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15890
         (126 letters)



>3lop_A Substrate binding periplasmic protein; protein structure
          initiative II(PSI II), NYSGXRC, structural genomics;
          1.55A {Ralstonia solanacearum}
          Length = 364

 Score = 27.3 bits (61), Expect = 1.3
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 5  GMTAPLTGSASPAGRRSALLMCLWVAEL 32
            + PL+GS +  GR       L+   L
Sbjct: 9  IQSLPLSGSQAVTGRALNAGARLYFDWL 36


>1mk4_A Hypothetical protein YQJY; alpha-beta-alpha sandwich, structural
          genomics, PSI, protein structure initiative; 1.70A
          {Bacillus subtilis} SCOP: d.108.1.1
          Length = 157

 Score = 27.0 bits (60), Expect = 1.3
 Identities = 4/28 (14%), Positives = 10/28 (35%)

Query: 28 WVAELDGSVAAATCPYVPPTTPYSMYTH 55
          ++     S+      +   + P + Y H
Sbjct: 45 FITSEHNSMTGFLIGFQSQSDPETAYIH 72


>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31,
           cell membrane, disulfide bond, glycoprotein,
           glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A
           {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A*
           3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*
          Length = 875

 Score = 26.7 bits (59), Expect = 2.2
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 26  CLWVAELDGSVAAATCPYVPPTTPYSMYTHRPASSD---PSLSRVAECNVMSSSIASLRL 82
           C W  +  G+V+   C Y      Y +  +   ++      L  +    V  S++ ++ L
Sbjct: 31  CCWNPQ--GAVSVPWC-YYSKNHSYHVEGNLVNTNAGFTARLKNLPSSPVFGSNVDNVLL 87

Query: 83  KAKQHS-NFNYTSITPP 98
            A+  + N  +  +T  
Sbjct: 88  TAEYQTSNRFHFKLTDQ 104


>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport,
          respiratory chain, cell flavoprotein, FMN, iron,
          iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
          thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2*
          3m9s_2*
          Length = 181

 Score = 26.4 bits (59), Expect = 2.3
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 14/56 (25%)

Query: 16 PAGR-RSALLMCLWVA-ELDGSVAAATCPYV------PPT------TPYSMYTHRP 57
          P    R+A++  L    + +G +       +       PT      + YS Y   P
Sbjct: 19 PPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVP 74


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.7 bits (55), Expect = 3.7
 Identities = 4/21 (19%), Positives = 8/21 (38%), Gaps = 4/21 (19%)

Query: 29 VAELDGSVAAATCPYVPPTTP 49
          + +L  S+      Y   + P
Sbjct: 22 LKKLQASLK----LYADDSAP 38


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.2 bits (57), Expect = 4.4
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 74  SSSIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYSDESVTRCPQASPVYA 126
           + S   L L    H +  +  +   V +A+   A Q  ++     P+ +  +A
Sbjct: 3   AYSTRPLTL---SHGSLEH-VL--LVPTASFFIASQLQEQFNKILPEPTEGFA 49


>1xe0_A Nucleophosmin; drosophila nucleoplasmin-like protein (DNLP),
          nucleoplasmin (NP), histone binding, X-RAY
          crystallography, chaperone; 1.70A {Xenopus laevis}
          SCOP: b.121.3.1 PDB: 1xb9_A 2p1b_A
          Length = 114

 Score = 24.6 bits (53), Expect = 8.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 77 IASLRLKAKQHSNFNYTSITPPV 99
          +ASL+   +   +     ITPPV
Sbjct: 68 LASLKPSVQPTVSLGGFEITPPV 90


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.123    0.369 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,737,374
Number of extensions: 83786
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 10
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)