RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15890
         (126 letters)



>d1m47a_ a.26.1.2 (A:) Interleukin-2 (IL-2) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 128

 Score = 25.6 bits (56), Expect = 1.5
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 79  SLRLKAKQH-SNFNYTSITPPVSSANNRAACQYSDESVT 116
           +  L+ +   SN N   +   +  +     C+Y+DE+ T
Sbjct: 72  NFHLRPRDLISNINVIVLE--LKGSETTFMCEYADETAT 108


>d1m4ua_ g.17.1.7 (A:) Noggin {Human (Homo sapiens) [TaxId: 9606]}
          Length = 206

 Score = 24.6 bits (53), Expect = 3.4
 Identities = 7/45 (15%), Positives = 13/45 (28%)

Query: 76  SIASLRLKAKQHSNFNYTSITPPVSSANNRAACQYSDESVTRCPQ 120
           +   LR     H +  + + +PP              E +    Q
Sbjct: 36  NETLLRSLLGGHYDPGFMATSPPEDRPGGGGGAAGGAEDLAELDQ 80


>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli
          [TaxId: 562]}
          Length = 346

 Score = 24.4 bits (51), Expect = 6.3
 Identities = 2/28 (7%), Positives = 9/28 (32%)

Query: 5  GMTAPLTGSASPAGRRSALLMCLWVAEL 32
           +   ++G  +  G          + ++
Sbjct: 6  AVVGAMSGPIAQWGDMEFNGARQAIKDI 33


>d1w0na_ b.18.1.28 (A:) Endo-1,4-beta-xylanase D {Paenibacillus
           polymyxa [TaxId: 1406]}
          Length = 120

 Score = 23.0 bits (49), Expect = 9.3
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 50  YSMYTHRPASSDPSLSRVAECNVMSSSIASLRLKAKQHSNFNYTSITPPVSSANN 104
           Y  Y+   A+S  ++S     +   ++   L +      +FN+T  TP V + +N
Sbjct: 34  YVSYSQYFANSTHNISVRGASSNAGTAKVDLVIGGVTVGSFNFTGKTPTVQTLSN 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.123    0.369 

Gapped
Lambda     K      H
   0.267   0.0391    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 411,280
Number of extensions: 14886
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 6
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.2 bits)