BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15891
(899 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q27607|DPOG1_DROME DNA polymerase subunit gamma-1, mitochondrial OS=Drosophila
melanogaster GN=tam PE=1 SV=2
Length = 1145
Score = 849 bits (2194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/897 (48%), Positives = 570/897 (63%), Gaps = 81/897 (9%)
Query: 3 DESWTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLAT 62
D W SSLNSL EV++LYC G L K RNIFVEG+LE + ++ +L YCA D AT
Sbjct: 311 DLGWLEQSSLNSLVEVHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEAT 370
Query: 63 FEVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLA 122
+ ++ L+PL+ ERFPHP +LA
Sbjct: 371 HRI--------------------------------------LRVLYPLYAERFPHPASLA 392
Query: 123 GMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWL 182
GMLE+ +AYLPVN+NW +Y E+ T+ DL++E K L + ++ACSLL DD+Y+ +LWL
Sbjct: 393 GMLEMGSAYLPVNSNWERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWL 452
Query: 183 WDQDWSVKDLKLKKKANKTLSVDQETEEPEEFYEINKNGEDQTEDEFVKRRRELVEKFKP 242
WD+DWSV++LKLK+ + +P E+ +G E R L KF+
Sbjct: 453 WDEDWSVQELKLKQPPKR---------KPLPTVELKDSGNTPEE-------RRLQAKFQH 496
Query: 243 LMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAWIPGPSL 302
L + LP L GYP WYRKLC KP + D + + D E W PG S
Sbjct: 497 LYDQQALLPARRPLLPGYPLWYRKLCRKPPAKRADEI---------LEDDEEPWSPGASE 547
Query: 303 ISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLEQL--KQLYNN 360
IST MQI PKLLSL W+ PLH+ R GWG+LVP+ +D + D +P+EQL
Sbjct: 548 ISTGMQIAPKLLSLCWEGYPLHYEREQGWGFLVPFRSDSEGVD--RLPMEQLLAHCPVPE 605
Query: 361 ITKQDNCEANVDNAQNSLRDSVETNISFIDCSKSAKRLEVIANVLDKKKLAEASSTDTST 420
+ +A D A + L VE ++ + K+L L+ + +
Sbjct: 606 FARLSASKAESDMAFDMLPGQVEQHLGK---REHYKKLSQKQQRLETQYQGSGVWCNKVL 662
Query: 421 DDADTPREIGFIKLPHKDGEHLNVGNPLSRDFINKFSDNSLAGVDI---GAKRIIEISRM 477
DD F+KLPHK+G VGNPLS+DF+NKF++N L+ D A R+I+I+RM
Sbjct: 663 DDC-----CFFLKLPHKNGPSFRVGNPLSKDFLNKFAENVLSSGDPSCQAAARVIDIARM 717
Query: 478 LSYWRNNHERVKKQFVVWLNKKDLPRRLVENIESEGRDYGVILPQLIVSGTLTRRAVEAT 537
+SYWRNN +R+ Q VVWL+ + LP + + YG I PQ++ GTLTRRA+E T
Sbjct: 718 MSYWRNNRDRIMGQMVVWLDSQQLPNEFTGE-KCQPIAYGAICPQVVACGTLTRRAMEPT 776
Query: 538 WMTASNAVGERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGW 597
WMTASN+ +R+GSELR+M+QAP GY ++GADVDSQELWIASV+GD+Y EHGATPLGW
Sbjct: 777 WMTASNSRPDRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGW 836
Query: 598 MTLSGQKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDA 657
MTLSG KSN +DMHSITAKAVGISR+HAK+INYARIYGAG+ FAE LL+QFNP S S+A
Sbjct: 837 MTLSGSKSNGSDMHSITAKAVGISRDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEA 896
Query: 658 KSKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGG 717
K+KA KM+++TKGK++YRL++ +EL R YS YEA + N ++ ++F +P W GG
Sbjct: 897 KAKAMKMFSITKGKRVYRLREEFHDELEDRAYSSYEASRLAIQRNRTLAEVFHRPNWQGG 956
Query: 718 TESAMFNRLEEIATSLQPVTPFLNCRLSRALEPVS--EDDSKFIQTRINWVVQSGAVDFL 775
TESAMFNRLEEIAT QP TPFL RLSRALE + E + +F+ TRINWVVQSGAVDFL
Sbjct: 957 TESAMFNRLEEIATGSQPRTPFLGGRLSRALEADTGPEQEQRFLPTRINWVVQSGAVDFL 1016
Query: 776 HLMLVCMRWLVSRDTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTD 835
HLMLV MRWL+ RF +S HDE+RYLV +E + ALA+H+TNL+TR+FC+ ++ + D
Sbjct: 1017 HLMLVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTRSFCVSRIGLQD 1076
Query: 836 IPLSISFFSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANG 892
+P+S++FFS VE+D VLRKE DCKTPSNP+GL GYGI G+ L + + I+KA G
Sbjct: 1077 LPMSVAFFSSVEVDTVLRKECTMDCKTPSNPHGLRIGYGIQPGQSLSVAEAIEKAGG 1133
>sp|P54098|DPOG1_HUMAN DNA polymerase subunit gamma-1 OS=Homo sapiens GN=POLG PE=1 SV=1
Length = 1239
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/950 (42%), Positives = 539/950 (56%), Gaps = 126/950 (13%)
Query: 6 WTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEV 65
W ++SS+NSL+EV++LY G L+K R +FV+G+++DI N+ +LM YCA+D AT
Sbjct: 347 WLDISSVNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATH-- 404
Query: 66 IQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGML 125
EV Q PLFLER PHPVTLAGML
Sbjct: 405 ------------------------------------EVFQQQLPLFLERCPHPVTLAGML 428
Query: 126 ELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWLWDQ 185
E+ +YLPVN NW +Y E+ T+ +L EMK LMD + AC LL ++YK+ WLWD
Sbjct: 429 EMGVSYLPVNQNWERYLAEAQGTYEELQREMKKSLMDLANDACQLLSGERYKEDPWLWDL 488
Query: 186 DWSVKDLKLKKKANKTLSVDQETEEPEEFYEINKNGEDQT-------EDEFVK--RRREL 236
+W +++ K KK ++ P E + DQ E+EF + R
Sbjct: 489 EWDLQEFKQKKAKKVKKEPATASKLPIEGAGAPGDPMDQEDLGPCSEEEEFQQDVMARAC 548
Query: 237 VEKFKPLMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAW 296
++K K T + LP +L G+P WYRKLC + + D AW
Sbjct: 549 LQKLK---GTTELLPKRPQHLPGHPGWYRKLCPR------------------LDDP--AW 585
Query: 297 IPGPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTD--IKVPDAENI----- 349
PGPSL+S M++TPKL++LTW PLH+ HGWGYLVP D K+P +
Sbjct: 586 TPGPSLLSLQMRVTPKLMALTWDGFPLHYSERHGWGYLVPGRRDNLAKLPTGTTLESAGV 645
Query: 350 --PLEQLKQLY---------NNITKQDNCEAN----VDNAQ--------NSLRDSVETNI 386
P ++ LY + Q+ A DN+ + L E +
Sbjct: 646 VCPYRAIESLYRKHCLEQGKQQLMPQEAGLAEEFLLTDNSAIWQTVEELDYLEVEAEAKM 705
Query: 387 SFIDCSKSAKRLEVIANVLDKKKLAEASSTDTSTDDADTPREIGFIKLPHKDGEHLNVGN 446
+ + + L + A K + +D D P F KLPHKDG NVG+
Sbjct: 706 ENLRAAVPGQPLALTARGGPKDTQPSYHHGNGPYNDVDIP-GCWFFKLPHKDGNSCNVGS 764
Query: 447 PLSRDFINKFSDNSLAGVDIGAK--RIIEISRMLSYWRNNHERVKKQFVVWLNKKDLPRR 504
P ++DF+ K D +L GA R +EI++M+S+WRN H+R+ Q VVWL + LPR
Sbjct: 765 PFAKDFLPKMEDGTLQAGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRA 824
Query: 505 LVE--NIESEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMIQAPDG 562
++ + + EG YG ILPQ++ +GT+TRRAVE TW+TASNA +RVGSEL+AM+QAP G
Sbjct: 825 VIRHPDYDEEGL-YGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPG 883
Query: 563 YSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDMHSITAKAVGISR 622
Y+++GADVDSQELWIA+V+GD++ A HG T GWMTL G+KS TD+HS TA VGISR
Sbjct: 884 YTLVGADVDSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISR 943
Query: 623 EHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKGKKLYRLKDGHLE 682
EHAKI NY RIYGAG+ FAERLL QFN +++ +A KA++MY TKG + YRL D E
Sbjct: 944 EHAKIFNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSD-EGE 1002
Query: 683 ELIKRVYSKYE---------------AREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLE 727
L++ + + RE ++ + W GGTES MFN+LE
Sbjct: 1003 WLVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLE 1062
Query: 728 EIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVS 787
IATS P TP L C +SRALEP S +F+ +R+NWVVQS AVD+LHLMLV M+WL
Sbjct: 1063 SIATSDIPRTPVLGCCISRALEP-SAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFE 1121
Query: 788 R---DTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFS 844
D RF ISIHDE+RYLV +E++Y ALAL +TNLLTR KL + D+P S++FFS
Sbjct: 1122 EFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFS 1181
Query: 845 GVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANGVI 894
V+ID+ LRKE DCKTPSNP G+ + YGIP GE LDIYQ I+ G +
Sbjct: 1182 AVDIDRCLRKEVTMDCKTPSNPTGMERRYGIPQGEALDIYQIIELTKGSL 1231
>sp|Q9QYV8|DPOG1_RAT DNA polymerase subunit gamma-1 OS=Rattus norvegicus GN=Polg PE=2 SV=1
Length = 1216
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/941 (43%), Positives = 539/941 (57%), Gaps = 113/941 (12%)
Query: 6 WTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEV 65
W ++SS N+L++V+ LY G L K R +FV+GS+ DI N+ +LM YCA+D AT
Sbjct: 329 WMDISSANNLADVHNLYVGGPRLAKEPRELFVKGSMRDIRENFQDLMEYCARDVWAT--- 385
Query: 66 IQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGML 125
FEV Q PLFLER PHPVTLAGML
Sbjct: 386 -----------------------------------FEVFQQQLPLFLERCPHPVTLAGML 410
Query: 126 ELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWLWDQ 185
E+ +YLPVN NW +Y E+ T+ +L EMK LM+ + AC LL ++YK+ WLWD
Sbjct: 411 EMGVSYLPVNQNWERYLTEAQSTYEELQREMKKSLMELANDACQLLSGERYKEDPWLWDL 470
Query: 186 DWSVKDLKLKKKANK--TLSVDQETEEPEEFYEINKNGEDQ---TEDEFVKRRRELVEKF 240
+W +++ K KK T S + E + + ED +E+E +++ +
Sbjct: 471 EWDLQEFKQKKAKKVKKTASASKLPIEGAGPFGDPMDQEDPGPPSEEEELQQNIMAHTRL 530
Query: 241 KPLMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAWIPGP 300
+ L T D LP +L G+P WYRKLC + + D AW PGP
Sbjct: 531 QQLKSTTDLLPKRPQHLPGHPGWYRKLCPR------------------LDDP--AWTPGP 570
Query: 301 SLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYS----TDIKVPDAE-----NIPL 351
SL+S M++TPKL++LTW PLH+ HGWGYLVP T++ V E P
Sbjct: 571 SLLSLQMRVTPKLMALTWDGFPLHYSDSHGWGYLVPGRRDNLTELPVSPTEESAAVTCPY 630
Query: 352 EQLKQLYN----NITKQDNCEANVDNAQNSL--RDSVETNISFIDCSKSAKRLEVIANVL 405
++ LY + KQ D A+ L ++ + + C V ++ L
Sbjct: 631 RAIESLYRRHCLDQGKQQLETQETDLAEEFLLTDSAMWQTVEELGCLDVEAEATVESSGL 690
Query: 406 DKKKL---AEASSTDTST--------DDADTPREIGFIKLPHKDGEHLNVGNPLSRDFIN 454
+ + A A T T +D D P F KLPHKDG + NVG+P ++DF+
Sbjct: 691 SQPLVPPTACAPKTSQPTYHHGNGPYNDVDIP-GCWFFKLPHKDGNNYNVGSPFAKDFLP 749
Query: 455 KFSDNSLAGVDIGAK--RIIEISRMLSYWRNNHERVKKQFVVWLNKKDLPRRLVENIE-S 511
K D +L GA+ R +EI++M+S+WRN H+R+ Q VVWL + LPR + +
Sbjct: 750 KMEDGTLQAGPGGARGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRAVTRHPSFD 809
Query: 512 EGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMIQAPDGYSIIGADVD 571
E YG ILPQ++ +GT+TRRAVE TW+TASNA +RVGSEL+AM+QAP GY ++GADVD
Sbjct: 810 EESHYGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYVLVGADVD 869
Query: 572 SQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDMHSITAKAVGISREHAKIINYA 631
SQELWIA+V+GD++ A HG T GWMTL G+KS TD+HS TA VGISREHAK+ NY
Sbjct: 870 SQELWIAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKVFNYG 929
Query: 632 RIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKGKKLYRLKDGHLEELIKRVYSK 691
RIYGAG+ FAERLL QFN +S+ +A KA++MY +TKG + YRL D E L+K++
Sbjct: 930 RIYGAGQSFAERLLMQFNHRLSRQEAADKAQQMYAVTKGLRRYRLSDDG-EWLVKQLNVP 988
Query: 692 YE---------------AREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEEIATSLQPV 736
+ RE ++ + W GGTES MFN+LE IA S P
Sbjct: 989 VDRTEDGWVSLQDLRKIRREASRKSRWKKWEVVTERAWTGGTESEMFNKLESIAMSDTPR 1048
Query: 737 TPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSR---DTRFV 793
TP L C +SRALEP S +F+ +R+NWVVQS AVD+LHLMLV M+WL D RF
Sbjct: 1049 TPVLGCCISRALEP-SVVQGEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFC 1107
Query: 794 ISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSGVEIDKVLR 853
ISIHDE+RYLV +E++Y ALAL +TNLLTR KL + D+P S++FFS V+ID+ LR
Sbjct: 1108 ISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDQCLR 1167
Query: 854 KESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANGVI 894
KE DCKTPSNP G+ + YGIP GE LDIYQ I+ G +
Sbjct: 1168 KEVTMDCKTPSNPTGMERKYGIPQGEALDIYQIIELTKGSL 1208
>sp|P54099|DPOG1_MOUSE DNA polymerase subunit gamma-1 OS=Mus musculus GN=Polg PE=1 SV=2
Length = 1239
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/943 (43%), Positives = 535/943 (56%), Gaps = 120/943 (12%)
Query: 8 NVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQ 67
++SS N+L++V+ LY G L+K R +FV+GS+ DI N+ +LM YCA+D AT
Sbjct: 332 DISSANNLADVHNLYVGGPPLEKEPRELFVKGSMRDIRENFQDLMQYCARDVWAT----- 386
Query: 68 ALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGMLEL 127
FEV Q PLFLER PHPVTLAGMLE+
Sbjct: 387 ---------------------------------FEVFQQQLPLFLERCPHPVTLAGMLEM 413
Query: 128 STAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWLWDQDW 187
+YLPVN NW +Y E+ T+ +L EMK LMD + AC LL ++YK+ WLWD +W
Sbjct: 414 GVSYLPVNQNWERYLTEAQNTYEELQREMKKSLMDLANDACQLLSGERYKEDPWLWDLEW 473
Query: 188 SVKDLKLKKKANKTLSVDQETEEPEEFYEINKNGEDQ------TEDEFVKRRRELVEKFK 241
+++ K KK ++ P E + DQ +E+E ++R + +
Sbjct: 474 DLQEFKQKKAKKVKKPAS-ASKLPIEGAGPFGDPMDQEDPGPPSEEEELQRSVTAHNRLQ 532
Query: 242 PLMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAWIPGPS 301
L T D LP +L G+P WYR+LC + + D AW PGPS
Sbjct: 533 QLRSTTDLLPKRPQHLPGHPGWYRQLCPR------------------LDDP--AWAPGPS 572
Query: 302 LISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTD-IKVPD--------AENIPLE 352
L+S M++TPKL++LTW PLH+ HGWGYLVP D + P A P
Sbjct: 573 LLSLQMRVTPKLMALTWDGFPLHYSDSHGWGYLVPGRRDNLTEPPVSPTVESAAVTCPYR 632
Query: 353 QLKQLYNNIT----KQDNCEANVDNAQ------NSLRDSVETNISFIDCSKSAKR----- 397
++ LY KQ VD A+ NS + +D AK
Sbjct: 633 AIESLYRKHCLEQGKQQLEPQEVDLAEEFLLTDNSAMWQTVEELGCLDVEAEAKMENSGL 692
Query: 398 ---LEVIANVLDKKKLAEASSTDTSTDDADTPREIGFIKLPHKDGEHLNVGNPLSRDFIN 454
L + A K + +D + P F KLPHKDG + NVG+P ++DF+
Sbjct: 693 SQPLVLPAACAPKSSQPTYHHGNGPYNDVNIP-GCWFFKLPHKDGNNYNVGSPFAKDFLP 751
Query: 455 KFSDNSLAGVDIGAK--RIIEISRMLSYWRNNHERVKKQFVVWLNKKDLPRRLVEN--IE 510
K D +L GA R +EI++M+S+WRN H+R+ Q VVWL + LPR + + +
Sbjct: 752 KMEDGTLQAGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRVVTRHPAFD 811
Query: 511 SEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMIQAPDGYSIIGADV 570
EG YG ILPQ++ +GT+TRRAVE TW+TASNA +RVGSEL+AM+QAP GY ++GADV
Sbjct: 812 EEGH-YGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYVLVGADV 870
Query: 571 DSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDMHSITAKAVGISREHAKIINY 630
DSQELWIA+V+GD++ A HG T GWMTL G+KS TD+HS TA VGISREHAKI NY
Sbjct: 871 DSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTAATVGISREHAKIFNY 930
Query: 631 ARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKGKKLYRLK-DGHLEELIKRVY 689
RIYGAG+ FAERLL QFN +++ +A KA++MY +TKG + YRL DG E L+K++
Sbjct: 931 GRIYGAGQSFAERLLMQFNHRLTRQEAAEKAQQMYAVTKGLRRYRLSADG--EWLVKQLN 988
Query: 690 SKYE---------------AREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEEIATSLQ 734
+ RE ++ + W GGTES MFN+LE IA S
Sbjct: 989 LPVDRTEDGWVSLQDLRMIRREASRKSRWKKWEVAAERAWTGGTESEMFNKLESIAMSDT 1048
Query: 735 PVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSR---DTR 791
P TP L C +SRALEP S +FI +R+NWVVQS AVD+LHLMLV M+WL D R
Sbjct: 1049 PRTPVLGCCISRALEP-SVVQGEFITSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGR 1107
Query: 792 FVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSGVEIDKV 851
F ISIHDE+RYLV +E++Y ALAL +TNLLTR KL + D+P S++FFS V+ID+
Sbjct: 1108 FCISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDQC 1167
Query: 852 LRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANGVI 894
LRKE DCKTPSNP G+ + YGIP GE LDIYQ I+ G +
Sbjct: 1168 LRKEVTMDCKTPSNPTGMERRYGIPQGEALDIYQIIELTKGSL 1210
>sp|Q91684|DPOG1_XENLA DNA polymerase subunit gamma-1 OS=Xenopus laevis GN=polg PE=2 SV=1
Length = 1200
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/951 (42%), Positives = 532/951 (55%), Gaps = 133/951 (13%)
Query: 6 WTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEV 65
W N+SS+N+L++V+ LY G L+K R +FV+GS+ DI + LM YCA D AT
Sbjct: 321 WVNISSINNLADVHALYVGGPPLEKEARELFVKGSMSDIRTEFQELMRYCALDVQATH-- 378
Query: 66 IQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGML 125
EV Q FPLF+ER PHPVTL+GML
Sbjct: 379 ------------------------------------EVFQEQFPLFMERCPHPVTLSGML 402
Query: 126 ELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWLWDQ 185
E+ +YLPVN NW +Y +E+ ++ +L EMK LM + AC LL D YK+ WLWD
Sbjct: 403 EMGVSYLPVNQNWERYLDEAQTSYEELQKEMKKSLMKLANDACQLLTKDAYKEDPWLWDL 462
Query: 186 DWSVKDLKLKKKANKTLSVDQETEEPEEFYEINKNGEDQTEDEFVKRRRELVEKFKPLM- 244
+W +++ K KK + E E NK ED ED +E + +P M
Sbjct: 463 EWDIQESKQKKTKISKKQK-KANEAAESVG--NKLVEDHNEDPGPPTEKE---ESRPSMG 516
Query: 245 ---------QTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEA 295
+T LP + +L G+P WYRKLC K D
Sbjct: 517 KLYLEDLKLKTLPLLPKRNQHLPGHPGWYRKLCPKLEDPD-------------------- 556
Query: 296 WIPGPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAEN-----IP 350
W+PGP LIS M++TPKL+ LTW PLH+ HGWGYLVP + K+ + E P
Sbjct: 557 WLPGPGLISLQMRLTPKLMRLTWDGYPLHYSEKHGWGYLVPGRKNNKLNNEEEEEIIPCP 616
Query: 351 LEQLKQLYNNITK---QDNC--------EANVDNAQNSLRDSVETNISFIDCSKSAKRLE 399
++ +Y +K +D C E + NS+ VE +S + S+ E
Sbjct: 617 YRAIEDIYAEYSKNKTKDGCLSQHSTIPEEFMLTDDNSMWQKVE-ELSRTEMDLSS---E 672
Query: 400 VIANVLDKKKLAEASST-------DTSTDDADTPREIG--------FIKLPHKDGEHLNV 444
V A KK+ + D+ D+ G F KLPHKDG NV
Sbjct: 673 VPATAKAKKRNNSSEHPVKLEMEFDSLPDNHHGNSPCGDVNVSGCWFYKLPHKDGNANNV 732
Query: 445 GNPLSRDFINKFSDNSLAGV--DIGAKRIIEISRMLSYWRNNHERVKKQFVVWLNKKDLP 502
G+P ++DF+ K D +L D A R +EI++M+S+WRN H+R+ Q VVW+ K +L
Sbjct: 733 GSPFAKDFLPKMEDGTLQASTGDSSATRALEINKMISFWRNAHKRISSQMVVWMKKNELH 792
Query: 503 RRLVENIE-SEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMIQAPD 561
R + + E E YG IL Q++ +GT+TRRAVE TW+TASNA +RVGSEL+AM+Q P
Sbjct: 793 RTITRDPEFDEENKYGAILAQVVSAGTITRRAVEPTWLTASNARADRVGSELKAMVQVPP 852
Query: 562 GYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDMHSITAKAVGIS 621
GY +IGADVDSQELWIA+++G+++ A HG T GWMTL G+KS+ TD+HS TA VGIS
Sbjct: 853 GYHLIGADVDSQELWIAAILGEAHFAGIHGCTAFGWMTLQGKKSSGTDLHSKTASTVGIS 912
Query: 622 REHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKGKKLYRL-KDGH 680
REHAK+ NY RIYGAG+ FAERLL QFN +++ A KA++MY +TKG + Y L K+G
Sbjct: 913 REHAKVFNYGRIYGAGQPFAERLLMQFNHRLTQEQAAEKAKQMYAVTKGIRRYILSKEG- 971
Query: 681 LEELIKRVYSKYEAREVCSAYNTSVDKI--------------FDKPQWYGGTESAMFNRL 726
E L++ + E E S + KI + W GGTES MFN+L
Sbjct: 972 -EWLVEELGISVERGEENSVNLQDLRKIQKDATKRSRRKWNLVSRRIWTGGTESQMFNKL 1030
Query: 727 EEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLV 786
E IA S P TP L CR+SRALEP + +FI +R+NWVVQS AVD+LHLMLV M+WL
Sbjct: 1031 ETIAMSPSPKTPVLGCRISRALEPTAV-KGEFITSRVNWVVQSSAVDYLHLMLVAMKWLF 1089
Query: 787 SR---DTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFF 843
D RF ISIHDE+RYLV +++Y ALAL +TNLLTR +L + D+P S++FF
Sbjct: 1090 EAYDIDGRFCISIHDEVRYLVHSKDRYRAALALQITNLLTRCMFASRLGIQDVPQSVAFF 1149
Query: 844 SGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANGVI 894
S V+IDK LRKE DC TPSNP G+ K YGIP GE LDIYQ + GV+
Sbjct: 1150 SAVDIDKCLRKEVTMDCSTPSNPNGMEKRYGIPQGEALDIYQILKVTKGVL 1200
>sp|Q92076|DPOG1_CHICK DNA polymerase subunit gamma-1 (Fragment) OS=Gallus gallus GN=POLG
PE=2 SV=1
Length = 647
Score = 561 bits (1446), Expect = e-159, Method: Compositional matrix adjust.
Identities = 296/652 (45%), Positives = 396/652 (60%), Gaps = 60/652 (9%)
Query: 294 EAWIPGPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTD-----IKVPDAEN 348
E W+PGPSLIS M++TPKL+ L W PLH+ HGWGYLVP D P+
Sbjct: 2 EGWVPGPSLISLQMRVTPKLMRLAWDGFPLHYSEKHGWGYLVPGRQDNLPAASAEPEGPV 61
Query: 349 IPLEQLKQLYNNITKQDNCEANVDNAQNSLRDSVETNISFIDCSKSAKRLEVIANV-LDK 407
P +++LY Q E + A VE + ++ S +++E ++ + LD
Sbjct: 62 CPHRAIERLYRQHCLQRGQEQPPEEA------GVEDELMVLEGSSMWQKVEELSQLELDM 115
Query: 408 KKLAEASSTDTSTDDA----------------DTPRE------IGFIKLPHKDGEHLNVG 445
++ A + +D + P F KLPHKDG NVG
Sbjct: 116 ERPGRAEQSQMQDEDGLPELVEESSQPSFHHGNGPYNDVNIPGCWFFKLPHKDGNENNVG 175
Query: 446 NPLSRDFINKFSDNSLAGVDIG---AKRIIEISRMLSYWRNNHERVKKQFVVWLNKKDLP 502
+P ++DF+ + D +L +G R +EI++M+S+WRN H+RV Q VVWL K +LP
Sbjct: 176 SPFAKDFLPRMEDGTLRAA-VGRTHGTRALEINKMVSFWRNAHKRVSSQVVVWLKKGELP 234
Query: 503 RRLVEN-IESEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMIQAPD 561
R + + SE DYG ILPQ++ +GT+TRRAVE TW+TASNA +RVGSEL+AM+Q P
Sbjct: 235 RAVTRHPAYSEEEDYGAILPQVVTAGTITRRAVEPTWLTASNARADRVGSELKAMVQVPP 294
Query: 562 GYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDMHSITAKAVGIS 621
GYS++GADVDSQELWIA+V+G+++ A HG T GWMTL G+KS+ TD+HS TA VGIS
Sbjct: 295 GYSLVGADVDSQELWIAAVLGEAHFAGMHGCTAFGWMTLQGKKSDGTDLHSKTAATVGIS 354
Query: 622 REHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKGKKLYRLKDGHL 681
REHAK+ NY RIYGAG+ FAERLL QFN +++ A+ KA++MY +TKG + + L +
Sbjct: 355 REHAKVFNYGRIYGAGQPFAERLLMQFNHRLTQQQAREKAQQMYAVTKGIRRFHLSE-EG 413
Query: 682 EELIKRVYSKYEAREVCSAYNTSVDKIFDKP----------------QWYGGTESAMFNR 725
E L+K + + E + V KI + W GGTES MFN+
Sbjct: 414 EWLVKELELAVDKAEDGTVSAQDVQKIQREAMRKSRRKKKWDVVAHRMWAGGTESEMFNK 473
Query: 726 LEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWL 785
LE IA S P TP L C +SRALEP +F+ +R+NWVVQS AVD+LHLMLV M+WL
Sbjct: 474 LESIALSASPQTPVLGCHISRALEPAVA-KGEFLTSRVNWVVQSSAVDYLHLMLVSMKWL 532
Query: 786 VSR---DTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISF 842
+ RF ISIHDE+RYLV ++++Y ALAL +TNLLTR KL + D+P S++F
Sbjct: 533 FEEYDINGRFCISIHDEVRYLVQEQDRYRAALALQITNLLTRCMFAYKLGLQDLPQSVAF 592
Query: 843 FSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANGVI 894
FS V+ID+ LRKE +C TPSNP G+ K YGIP GE LDIYQ I+ G +
Sbjct: 593 FSAVDIDRCLRKEVTMNCATPSNPTGMEKKYGIPRGEALDIYQIIEITKGSL 644
>sp|Q01941|DPOG_PICPA DNA polymerase gamma OS=Komagataella pastoris GN=MIP1 PE=3 SV=1
Length = 1012
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 295/894 (32%), Positives = 423/894 (47%), Gaps = 236/894 (26%)
Query: 1 MTDESWTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTL 60
+ D W N SSLNSL V + YC+ K L K RN F +++ N+ LM YCAKD
Sbjct: 284 LEDNPWINKSSLNSLERVAEFYCKIK-LKKDIRNSFATEDPDELRGNFDELMQYCAKDVF 342
Query: 61 ATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVT 120
AT + V Q ++P F + PHPVT
Sbjct: 343 ATGK--------------------------------------VFQKVYPKFKKLIPHPVT 364
Query: 121 LAGMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHD--DKYKD 178
LA + ++S+ LP W Y S + + + ++ L C++ L D +++
Sbjct: 365 LAALKDISSCILPTTTKWEDYIETSERLYQESRRMIEKNLHVICEETVKLKDDPTKPWEN 424
Query: 179 SLWLWDQDWSVKDLKLKKKANKTLSVDQETEEPEEFYEINKNGEDQTEDEFVKRRRELVE 238
WL DW++ ++L KK EI+KN
Sbjct: 425 DPWLSQLDWTIDPIRLTKKG-----------------EIHKN------------------ 449
Query: 239 KFKPLMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAWIP 298
+LP GYP WY++L VK EL
Sbjct: 450 ---------QKLP-------GYPNWYKQLIVK-----------NEL-------------- 468
Query: 299 GPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLEQLKQLY 358
++T + +P LL L W PL++I+ GW + KVP + E+L
Sbjct: 469 ---KLTTKTRTSPLLLKLAWNGNPLYWIQTQGWCF--------KVPKNKTEEYEKL---- 513
Query: 359 NNITKQDNCEANVDNAQNSLRDSVETNISFIDCSKSAKRLEVIANVLDKKKLAEASSTDT 418
+F+ ++ KKL+E ++
Sbjct: 514 ----------------------------NFV--------------MVSLKKLSEDPGFES 531
Query: 419 STDDADTPREIGFIKLPHKDGEHLNVGNPLSRDFINKFSDNSLAGVDIGAKRIIEISRML 478
A+ + F+K+PH DG V N +++ + F L AK ++++
Sbjct: 532 IR--AEDLKNFTFVKVPHPDGPSARVTNCMTKSCLGFFEKGFLNSQYPLAKDALQMAVAS 589
Query: 479 SYWRNNHERVKKQFVVWLNKKDLPRRLVENIESEGRDYGVILPQLIVSGTLTRRAVEATW 538
SYW ++ ER+ QFVV+ + D G ILPQ+I GT+TRRAVE TW
Sbjct: 590 SYWTSSRERIMNQFVVFED-----------------DMGYILPQIIPMGTITRRAVENTW 632
Query: 539 MTASNAVGERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWM 598
+TASNA R+GSEL+++I+AP GY +GADVDS+ELWIAS+IGDS K HG T +GWM
Sbjct: 633 LTASNAKKNRLGSELKSLIEAPKGYCFVGADVDSEELWIASLIGDS-VFKIHGGTAIGWM 691
Query: 599 TLSGQKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAK 658
TL G K+ TD+HS TAK +GISR AKI NY RIYGAG +F LLK+FNP +S ++AK
Sbjct: 692 TLEGTKNEGTDLHSKTAKILGISRNEAKIFNYGRIYGAGIKFTTTLLKKFNPALSDAEAK 751
Query: 659 SKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGT 718
+ A +YT TKG + +Y+ + + WYGG+
Sbjct: 752 ATANALYTATKG-----------------ISGRYDKKSI----------------WYGGS 778
Query: 719 ESAMFNRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLM 778
ES +FNRLE IA P TP L ++ L+ + + F+ +RINW +QS VD+LHL+
Sbjct: 779 ESIIFNRLEAIAEMAHPKTPVLGAGITAPLQKANLSTNNFLTSRINWAIQSSGVDYLHLL 838
Query: 779 LVCMRWLVSR---DTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTD 835
++ M +L+ D R I++HDEIRYLV +E+K+ A AL ++NL TRA ++L + +
Sbjct: 839 IISMDYLIKLFDIDARLCITVHDEIRYLVKEEDKFRAAYALQISNLWTRAMFCQQLGINE 898
Query: 836 IPLSISFFSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDK 889
+P S +FFS V++D VLRKE D DC TPSNP IP G+ LDIYQ + +
Sbjct: 899 VPQSCAFFSAVDLDFVLRKEVDLDCVTPSNP------DPIPCGKSLDIYQLLQQ 946
>sp|Q9Y767|DPOG_NEUCR DNA polymerase gamma, mitochondrial OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=mip-1 PE=3 SV=2
Length = 1456
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/465 (42%), Positives = 280/465 (60%), Gaps = 41/465 (8%)
Query: 431 FIKLPHKDGEHLNVGNPLSRDFINKFSDNSLAGVDIGAKRIIEISRMLSYWRNNHERVKK 490
+ KLPHKDG + NP+++ ++ F L+ AK +E++ SYW + ER+K
Sbjct: 601 YFKLPHKDGPNARCVNPMAKGYLPYFEKGILSSEYPYAKEALEMNASCSYWISARERIKN 660
Query: 491 QFVVWLNKKDLPRRLV-ENIESEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERV 549
Q VV+ ++ +R V ++ +S G +LPQ+I GT+TRRAVE TW+TASNA RV
Sbjct: 661 QMVVYEDQLPPSQRFVNKDADSNTPIGGFVLPQVIPMGTITRRAVERTWLTASNAKKNRV 720
Query: 550 GSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATD 609
GSEL+AM++AP GY +GADVDS+ELWIASV+GD+ K HG +G+MTL G KS TD
Sbjct: 721 GSELKAMVRAPPGYVFVGADVDSEELWIASVVGDA-TFKLHGGNAIGFMTLEGTKSQGTD 779
Query: 610 MHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTK 669
+HS TA +GI+R AK+ NY RIYGAG +FA +LL+QFNP +++++ + A K+Y TK
Sbjct: 780 LHSRTASILGITRNDAKVFNYGRIYGAGLKFASQLLRQFNPSLTEAETTAIATKLYDATK 839
Query: 670 GKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEEI 729
G K T+ ++ +P W GGTES +FN LEE
Sbjct: 840 GAK------------------------------TNRKSLYKRPFWRGGTESFVFNMLEEF 869
Query: 730 ATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSR- 788
A +P TP L ++ AL F+ +RINW +QS VD+LHL+++ M +L R
Sbjct: 870 AEQERPRTPVLGAGITEALMSRWVSKGGFLTSRINWAIQSSGVDYLHLLIIAMDYLTRRF 929
Query: 789 --DTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSGV 846
R I++HDEIRYL + +KY A+AL + NL TR +++ + D+P S +FFS V
Sbjct: 930 NLACRLAITVHDEIRYLAEEPDKYRVAMALQIANLWTRVMFAQQVGIQDLPQSCAFFSAV 989
Query: 847 EIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKAN 891
+ID VLRKE D DC TPSNP + GE +DI+Q ++K +
Sbjct: 990 DIDHVLRKEVDMDCITPSNPIPIAH------GESIDIFQILEKGD 1028
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 126/342 (36%), Gaps = 111/342 (32%)
Query: 6 WTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEV 65
W + SS+NSL +V + + K+ DK R++F E I N +L+TYCA D T +V
Sbjct: 326 WVDKSSINSLRDVAQFHLNVKI-DKDIRDVFAETDRNVILNQLDDLLTYCAADVQVTHQV 384
Query: 66 IQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGML 125
Q +FP FL PHPV+ A + L
Sbjct: 385 YQVVFPNFLGVCPHPVSFAALRHL------------------------------------ 408
Query: 126 ELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHD-DKYKDSLWLWD 184
++ LPVN W Y + T+ + ++ L ++ D +KY WL
Sbjct: 409 --ASVILPVNKTWDTYIETAEATYLQMLHGVQERLFTLMERTLDYKADPEKYLSDPWLSQ 466
Query: 185 QDWSVKDLKLKKKANKTLSVDQETEEPEEFYEINKNGEDQTEDEFVKRRRELVEKFKPLM 244
DWS +++K+ K K G+ VE+
Sbjct: 467 LDWSGQEIKMAKP--------------------KKKGD--------------VER----- 487
Query: 245 QTKDRLPVNSSYLIGYPEWYRKLCVK----------PHSADKDAVSKQELIHDGISDTSE 294
P + L GYP+WY+ L VK P ++ ++ E I+
Sbjct: 488 ------PALNQKLPGYPQWYKDLFVKVPKELSGLDEPDKEQENRKARHEFIN-------- 533
Query: 295 AWIPGPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVP 336
++ +I P LL L+W+ PL + GW + VP
Sbjct: 534 --------LTVRSRIAPLLLKLSWEGYPLFWSDQFGWTFQVP 567
>sp|Q12704|DPOG_SCHPO DNA polymerase gamma OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mip1 PE=3 SV=2
Length = 1018
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/465 (42%), Positives = 279/465 (60%), Gaps = 46/465 (9%)
Query: 431 FIKLPHKDGEHLNVGNPLSRDFINKFSDNSLAGVDIGAKRIIEISRMLSYWRNNHERVKK 490
F K+PHKDG G+PLS+ + F + L AK+ +E+S SYW + +R++
Sbjct: 549 FFKVPHKDGPEARCGSPLSKSYQRYFEEGILQSDYEVAKKALEMSASCSYWSSARDRIRS 608
Query: 491 QFVVWLNKKDLPRRLVENIESEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVG 550
Q VVW +L + S +G+ILP +I GT+TRRAVE TW+TASN+ R+G
Sbjct: 609 QMVVWDKDAEL------GVPSSVDGFGIILPCIIPMGTVTRRAVENTWLTASNSKKNRLG 662
Query: 551 SELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDM 610
SEL+AMI+APDGY+ +GADVDS+ELWI +++GDS + HGAT LG MTL G+KS TD+
Sbjct: 663 SELKAMIRAPDGYTFVGADVDSEELWIVALMGDSQF-RLHGATALGMMTLEGKKSEGTDL 721
Query: 611 HSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKG 670
HS TA +G+SR+ AK+ NY R+YGAG + LL Q NP + ++AK A+K+Y TKG
Sbjct: 722 HSKTAAILGVSRDSAKVFNYGRLYGAGLKHTTLLLMQMNPTLKTAEAKELAKKLYASTKG 781
Query: 671 ---KKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLE 727
K RL++ L +L W GTES +FN+LE
Sbjct: 782 VKSKMSKRLQEMGLPKLTF---------------------------WSQGTESFVFNKLE 814
Query: 728 EIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVS 787
+A P TP L+ +++AL + + F+ +R+NW +QS AVD+LHL+LV M L+
Sbjct: 815 AMAQLPSPRTPVLDAGITQALSSKNLSKNSFMTSRVNWAIQSSAVDYLHLLLVSMNHLIK 874
Query: 788 R---DTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFS 844
+ + R +++HDE+RYL D++KY A AL V NL TRAF ++L + ++P S++FFS
Sbjct: 875 KYYLEARLSLTVHDEVRYLSSDKDKYRVAFALQVANLWTRAFFCQRLGINELPQSVAFFS 934
Query: 845 GVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDK 889
V+ID VLRK+ DC TPSN IP GE L I ++K
Sbjct: 935 SVDIDHVLRKDVKMDCVTPSN------KVPIPPGEELTIESVLEK 973
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 91/207 (43%), Gaps = 43/207 (20%)
Query: 1 MTDESWTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTL 60
+ E W SS+NSL +V K +C LDK+ R+ F E I + L+TYCA DT
Sbjct: 299 LKQEPWLAHSSVNSLKDVAKFHC-NITLDKSKRDDFASLEKEPILQKLNELITYCAHDTY 357
Query: 61 ATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVT 120
+T +V + +FP FLE PHP T + ML L +
Sbjct: 358 STHQVFKKVFPQFLEVCPHPATFSAMLSLGS----------------------------- 388
Query: 121 LAGMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLH--DDKYKD 178
+LPVN++W +Y N + + + + L ++A L++ D KD
Sbjct: 389 ---------VFLPVNHSWTRYINGVEEQYQQMIQLVDQKLSQYAEKAKDLINTKDTVLKD 439
Query: 179 SLWLWDQDWSVKDLKLK-KKANKTLSV 204
WL DW+ +L K KKA + + V
Sbjct: 440 P-WLRQLDWTPCNLYRKLKKATQEVPV 465
>sp|P15801|DPOG_YEAST DNA polymerase gamma OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MIP1 PE=1 SV=3
Length = 1254
Score = 362 bits (928), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 193/473 (40%), Positives = 278/473 (58%), Gaps = 48/473 (10%)
Query: 431 FIKLPHKDGEHLNVGNPLSRDFINKFSDNSLAGVDIGAKRIIEISRMLSYWRNNHERVKK 490
K+PH +G N N L++ + + F L A + ++I+ SYW + ER++
Sbjct: 551 LFKVPHPNGPTFNCTNLLTKSYNHFFEKGVLKSESELAHQALQINSSGSYWMSARERIQS 610
Query: 491 QFVVWLNK-----KDLPRRLVENIESEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAV 545
QFVV K + L + N E + D +I+P+++ GT+TRRAVE W+TASNA
Sbjct: 611 QFVVPSCKFPNEFQSLSAKSSLNNE-KTNDLAIIIPKIVPMGTITRRAVENAWLTASNAK 669
Query: 546 GERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKS 605
R+GSEL+ ++AP GY +GADVDS+ELWIAS++GDS HG T +GWM L G K+
Sbjct: 670 ANRIGSELKTQVKAPPGYCFVGADVDSEELWIASLVGDS-IFNVHGGTAIGWMCLEGTKN 728
Query: 606 NATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMY 665
TD+H+ TA+ +G SR AKI NY RIYGAG +FA +LLK+FNP ++ + K A K+Y
Sbjct: 729 EGTDLHTKTAQILGCSRNEAKIFNYGRIYGAGAKFASQLLKRFNPSLTDEETKKIANKLY 788
Query: 666 TLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNR 725
TKGK T K+F K WYGG+ES +FN+
Sbjct: 789 ENTKGK-------------------------------TKRSKLFKK-FWYGGSESILFNK 816
Query: 726 LEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWL 785
LE IA P TP L C ++ +L + + F+ +RINW +QS VD+LHL+ M ++
Sbjct: 817 LESIAEQETPKTPVLGCGITYSLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCSMEYI 876
Query: 786 VSR---DTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISF 842
+ + + R ISIHDEIR+LV +++KY A+AL ++N+ TRA +++ + ++P + +F
Sbjct: 877 IKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQISNIWTRAMFCQQMGINELPQNCAF 936
Query: 843 FSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANGVIG 895
FS V+ID V+RKE + DC TPSN IP GE LDI Q +DK+N +G
Sbjct: 937 FSQVDIDSVIRKEVNMDCITPSN------KTAIPHGEALDINQLLDKSNSKLG 983
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 128/337 (37%), Gaps = 117/337 (34%)
Query: 3 DESWTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLAT 62
D+ W NVS+LNSL +V K +C+ LDKTDR+ F I N+ L+ YCA D AT
Sbjct: 293 DDPWLNVSALNSLKDVAKFHCKID-LDKTDRDFFASTDKSTIIENFQKLVNYCATDVTAT 351
Query: 63 FEVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLA 122
+V +FP+FL++ PHPV+ AG+ LS LP L
Sbjct: 352 SQVFDEIFPVFLKKCPHPVSFAGLKSLSKCILPTKL------------------------ 387
Query: 123 GMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHD--DKYKDSL 180
N+W Y N S + V+++S ++ + + LL D D Y
Sbjct: 388 -------------NDWNDYLNSSESLYQQSKVQIESKIV-QIIKDIVLLKDKPDFYLKDP 433
Query: 181 WLWDQDWSVKDLKLKKKANKTLSVDQETEEPEEFYEINKNGEDQTEDEFVKRRRELVEKF 240
WL DW+ K L+L KK
Sbjct: 434 WLSQLDWTTKPLRLTKKG------------------------------------------ 451
Query: 241 KPLMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAWIPGP 300
+P L G+PEWYR+L KD V +
Sbjct: 452 ---------VPAKCQKLPGFPEWYRQLF-----PSKDTVEPK------------------ 479
Query: 301 SLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPY 337
I+ +I P L L+W++ P+ + + GW + VP+
Sbjct: 480 --ITIKSRIIPILFKLSWENSPVIWSKESGWCFNVPH 514
>sp|Q9RAA9|DPO1_RICFE DNA polymerase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=polA PE=3 SV=1
Length = 922
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 102/268 (38%), Gaps = 72/268 (26%)
Query: 550 GSELRAMIQAPDGYSIIGADVDSQELWIASVIGD------SYCAKEHGATPLGWMTLSGQ 603
G+++R A +GY +I AD EL I S I + ++ K+ T + Q
Sbjct: 682 GNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQ 741
Query: 604 KSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARK 663
K T H R AK IN+ IYG A L KQ N
Sbjct: 742 KHELTSEH----------RRKAKAINFGIIYGIS---AFGLAKQLN-------------- 774
Query: 664 MYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMF 723
+ +G E IK+ +++Y+ V + ++ + + + +
Sbjct: 775 ------------VSNGEASEYIKKYFAEYKG----------VQEYMEQTKAFASSNGYVI 812
Query: 724 NRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMR 783
N + P ++ + L+ +E + IN +Q D + + ++ +
Sbjct: 813 NFF-----GRKCFVPLIH---DKKLKQFAE------RAAINAPIQGTNADIIKIAMINLD 858
Query: 784 WLVSRD---TRFVISIHDEIRYLVPDEE 808
+ ++ TR V+ IHDE+ + VP++E
Sbjct: 859 QEIEKNNLKTRLVLQIHDELLFEVPEDE 886
>sp|Q92GB7|DPO1_RICCN DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=polA PE=3 SV=1
Length = 875
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 99/271 (36%), Gaps = 78/271 (28%)
Query: 550 GSELRAMIQAPDGYSIIGADVDSQELWIASVIGD------SYCAKEHGATPLGWMTLSGQ 603
G+++R A +GY +I AD EL I S I + ++ K+ T + Q
Sbjct: 635 GNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQ 694
Query: 604 KSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARK 663
K T H R AK IN+ IYG A L KQ N
Sbjct: 695 KHELTSEH----------RRKAKAINFGIIYGIS---AFGLAKQLN-------------- 727
Query: 664 MYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMF 723
+ +G E IK+ +++Y+ G + M
Sbjct: 728 ------------VTNGEASEYIKKYFAEYK-----------------------GVQEYM- 751
Query: 724 NRLEEIATSLQPVTPFLNCRLSRALEPVSEDD--SKFIQ-TRINWVVQSGAVDFLHLMLV 780
+ + A+S VT NC + P+ D +F + IN +Q D + + ++
Sbjct: 752 EQTKAFASSNGYVT---NCFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNTDIIKIAMI 808
Query: 781 CMRWLVSR---DTRFVISIHDEIRYLVPDEE 808
+ + + TR V+ IHDE+ + P +E
Sbjct: 809 NLDQEIEKRKLKTRLVLQIHDELLFEAPIDE 839
>sp|Q9RLB6|DPO1_RICHE DNA polymerase I OS=Rickettsia helvetica GN=polA PE=3 SV=1
Length = 921
Score = 42.4 bits (98), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 100/272 (36%), Gaps = 80/272 (29%)
Query: 550 GSELRAMIQAPDGYSIIGADVDSQELWIASVIGD------SYCAKEHGATPLGWMTLSGQ 603
G+++R A +GY +I AD EL I S I + ++ K+ T + Q
Sbjct: 681 GNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQ 740
Query: 604 KSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARK 663
K T+ H R AK IN+ IYG A L KQ N
Sbjct: 741 KHELTNEH----------RRKAKAINFGIIYGIS---AFGLAKQLN-------------- 773
Query: 664 MYTLTKGKKLYRLKDGHLEELIKRVYSKY----EAREVCSAYNTSVDKIFDKPQWYGGTE 719
+ +G E IK+ +++Y E E A+ +S G
Sbjct: 774 ------------VTNGEASEYIKKYFAEYKGVQEYMEQTKAFASS-----------NGYV 810
Query: 720 SAMFNRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLML 779
+ F R + P ++ + L+ +E + IN +Q D + + +
Sbjct: 811 TNFFGR--------KCFVPLIH---DKKLKQFAE------RAAINAPIQGTNADIIKIAM 853
Query: 780 VCMRWLVSR---DTRFVISIHDEIRYLVPDEE 808
+ + + + TR V+ IHDE+ + P +E
Sbjct: 854 INLDQEIEKRKLKTRLVLQIHDELLFEAPIDE 885
>sp|Q55971|DPO1_SYNY3 DNA polymerase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=polA PE=3 SV=1
Length = 986
Score = 41.2 bits (95), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 51/246 (20%)
Query: 609 DMHSITAKAV-------GISREHAKIINYARIYGAG-ERFAERLLKQFNPEMSKSDAKSK 660
D+H +TAK + R K IN+ IYG G +RFA + S
Sbjct: 776 DVHGVTAKLLFGKEDITPAERNLGKTINFGVIYGMGAQRFA------------RETGISA 823
Query: 661 ARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTES 720
+ + + Y +LE + K EA + Y T+ I + +++
Sbjct: 824 VEGREFIDRYHRTYAQVFDYLETM------KLEA--IAKGYVTT---IVGRRRYFNFVTE 872
Query: 721 AMFNRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLV 780
A+ + T L V +N +D++ +++ N +Q + D + + +V
Sbjct: 873 ALRQLRGKTVTELDLVDVKMNY-----------NDAQLLRSAANAPIQGSSADIIKIAMV 921
Query: 781 CM-RWLVSRDTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLS 839
+ + L S TR ++ +HDE+ + +P EE E LA + N + +A + +PL
Sbjct: 922 KLAKLLESYQTRMLLQVHDELIFEMPPEEWEE--LAPLIQNTMEQALTLS------VPLV 973
Query: 840 ISFFSG 845
+ G
Sbjct: 974 VEMHRG 979
>sp|Q9HT80|DPO1_PSEAE DNA polymerase I OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=polA PE=3 SV=1
Length = 913
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 97/258 (37%), Gaps = 66/258 (25%)
Query: 550 GSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATD 609
G +R AP GY ++ AD EL I ++ AK+ G L ++ A +
Sbjct: 671 GRRIRQAFVAPQGYKLLAADYSQIELRIM-----AHLAKDDGLLDAFRHDLDVHRATAAE 725
Query: 610 MHSITAKAV-GISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLT 668
+ + + V G R AK IN+ IYG A L KQ E ++ A
Sbjct: 726 VFGVPLEDVSGDQRRSAKAINFGLIYGMS---AFGLAKQIGVERKEAQA----------- 771
Query: 669 KGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNR--- 725
I R +++Y AY +++ + G E+ +F R
Sbjct: 772 ---------------YIDRYFARYPG---VLAY---MERTRAQAAEQGFVET-LFGRRLY 809
Query: 726 LEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCM-RW 784
L EI + N + +A E +T IN +Q A D + +V + W
Sbjct: 810 LPEIHSK--------NGAMRKAAE----------RTAINAPMQGTAADIMKRAMVAVDNW 851
Query: 785 LVSR--DTRFVISIHDEI 800
L D R ++ +HDE+
Sbjct: 852 LQESGLDARVILQVHDEL 869
>sp|C1DA02|SYL_LARHH Leucine--tRNA ligase OS=Laribacter hongkongensis (strain HLHK9)
GN=leuS PE=3 SV=1
Length = 866
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 20/147 (13%)
Query: 636 AGERFAERLLKQFNPEMSKSDAKSKARKMYT--LTKGKKLYRLKDGHLEELIKRVYSKYE 693
AG A R LK+ +S+ A A + LT +K RLK L I++V +
Sbjct: 672 AGVEGAYRFLKRLYKIVSEYVAGGVAERFVAGELTADEKALRLK---LHTTIQKVSDDFG 728
Query: 694 AREVCSAYNTSVDKIFDKPQWYGGTESAMFNR---LEEIATSLQPVTPFLNCRLSRALEP 750
R+ +NT++ + + + TE++ R LE + L P+ P + L AL+P
Sbjct: 729 VRQ---QFNTAIAAVMELLNLFDRTEASRAVRQEVLESVVVLLSPIVPHICETLWSALKP 785
Query: 751 VSE---------DDSKFIQTRINWVVQ 768
SE D + +Q I VVQ
Sbjct: 786 GSELLAQRWPEVDPAALVQDEIELVVQ 812
>sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=polA PE=3 SV=1
Length = 930
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 41/182 (22%)
Query: 500 DLPRRLVEN--IESEGRDYGVILPQLIVSGTLT-----RRAVEATWMTASN-------AV 545
+LP+ LV++ + Y LPQ++ S T +AV AT +S+ +
Sbjct: 625 ELPKILVKHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPI 684
Query: 546 GERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKS 605
G +R A +GYSI+ AD EL I ++ + + G L S
Sbjct: 685 RNEEGRHIRQAFIAREGYSIVAADYSQIELRIM-----AHLSGDQG--------LINAFS 731
Query: 606 NATDMHSITAKAV-GIS--------REHAKIINYARIYGAGERFAERLLKQFNPEMSKSD 656
D+H TA + G+S R +AK IN+ IYG R L +S++D
Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLG-----ISRAD 786
Query: 657 AK 658
A+
Sbjct: 787 AQ 788
>sp|Q05254|DPOL_BPML5 DNA polymerase OS=Mycobacterium phage L5 GN=44 PE=3 SV=1
Length = 595
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 582 GDSYCAKEHGATPLGWMT-LSGQKS------NATDMHSITAKAVGISREHAKIINYARIY 634
GD + ++ A L + LSG ++ N D+H +TA A + R+ K N+ ++Y
Sbjct: 384 GDVMASVDYQAQELRVLAALSGDRNMIEAFENGADLHQMTADAAQVPRKVGKTANFQKVY 443
Query: 635 GAGER 639
G G +
Sbjct: 444 GGGAK 448
>sp|Q0P651|CD029_HUMAN Uncharacterized protein C4orf29 OS=Homo sapiens GN=C4orf29 PE=2
SV=1
Length = 414
Score = 33.5 bits (75), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 92 AYLPDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAY--------LPVNNNWVKYFN 143
Y P + + + L + +P P+ L L STA + +VK+F
Sbjct: 189 GYGPLGMTGISMGGHMASLAVSNWPKPMPLIPCLSWSTASGVFTTTDSFKMGQEFVKHFT 248
Query: 144 ESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKY---KDSLWLWDQDWSVKDLKLKKKANK 200
S +LN+ ++L +D +Q S D + K S+ + ++D K+ N+
Sbjct: 249 SSADKLTNLNLVSRTLNLDISNQVVSQKPADCHNSSKTSVSATSEGLLLQDTSKMKRFNQ 308
Query: 201 TLSVDQE---TEEPEEFYEINK 219
TLS ++ + P+ ++ ++K
Sbjct: 309 TLSTNKSGYTSRNPQSYHLLSK 330
>sp|P54325|XKDE_BACSU Phage-like element PBSX protein XkdE OS=Bacillus subtilis (strain
168) GN=xkdE PE=3 SV=2
Length = 495
Score = 33.1 bits (74), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 628 INYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKGKKLY-------RLKDGH 680
+ Y R+ GAGE + + N +M + + + RK + GKK++ R D
Sbjct: 150 VKYMRVCGAGEPVEVSFVYEENGKMKRIKRQKRFRKYVQMINGKKVFFKEYGDPRKMDIR 209
Query: 681 LEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYG 716
E + + KY+A E S ++ P+W G
Sbjct: 210 TGEYVNTLAEKYQANEAIHLKIGS--GVYGVPRWIG 243
>sp|A5A3E0|POTEF_HUMAN POTE ankyrin domain family member F OS=Homo sapiens GN=POTEF PE=1
SV=2
Length = 1075
Score = 33.1 bits (74), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 18/119 (15%)
Query: 168 CSLLHDDKYKDSLWLWDQDWSV-KDLKLKKKANKTLSVDQETEEPEEFY---EINKNGED 223
C LL D K K L + ++ + +DLKL + E +PE+ EINK+G+
Sbjct: 354 CQLLSDYKEKQMLKISSENSNPEQDLKLTSEEESQRFKGSENSQPEKMSQEPEINKDGDR 413
Query: 224 QTEDEFVKRRRELVEKFKPLM--------------QTKDRLPVNSSYLIGYPEWYRKLC 268
+ E+E K V + L Q K R P N + E Y ++C
Sbjct: 414 EVEEEMKKHESNNVGLLENLTNGVTAGNGDNGLIPQRKSRTPENQQFPDNESEEYHRIC 472
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 342,533,394
Number of Sequences: 539616
Number of extensions: 14861980
Number of successful extensions: 42947
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 42828
Number of HSP's gapped (non-prelim): 93
length of query: 899
length of database: 191,569,459
effective HSP length: 127
effective length of query: 772
effective length of database: 123,038,227
effective search space: 94985511244
effective search space used: 94985511244
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)