Query psy15891
Match_columns 899
No_of_seqs 293 out of 1286
Neff 4.7
Searched_HMMs 29240
Date Sat Aug 17 00:17:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ikm_A DNA polymerase subunit 100.0 1E-243 4E-248 2129.0 36.6 824 2-895 274-1165(1172)
2 3pv8_A DNA polymerase I; DNA p 100.0 7.9E-53 2.7E-57 489.1 21.9 321 439-849 239-589 (592)
3 4dfk_A DNA polymerase I, therm 100.0 1.6E-52 5.6E-57 482.0 21.4 256 514-848 263-535 (540)
4 2kfn_A Klenow fragment of DNA 100.0 1.6E-52 5.5E-57 487.7 18.0 255 515-848 328-601 (605)
5 1bgx_T TAQ DNA polymerase; DNA 100.0 6E-51 2.1E-55 488.6 18.2 318 439-846 479-825 (832)
6 1x9m_A DNA polymerase; DNA plo 100.0 2.6E-49 8.8E-54 467.5 17.8 308 440-847 326-693 (698)
7 3ikm_A DNA polymerase subunit 97.9 3.7E-06 1.3E-10 102.4 3.3 44 60-107 338-381 (1172)
8 1noy_A Protein (DNA polymerase 82.2 1.7 5.8E-05 48.1 6.5 52 14-73 286-341 (388)
9 3saf_A Exosome component 10; e 69.6 3.8 0.00013 46.3 4.9 54 13-73 223-277 (428)
10 2py5_A DNA polymerase; protein 68.5 1.9 6.4E-05 50.4 2.2 56 13-73 128-184 (575)
11 1qht_A Protein (DNA polymerase 64.3 5.9 0.0002 47.9 5.4 52 13-73 273-330 (775)
12 2hbj_A Exosome complex exonucl 58.2 9.2 0.00032 42.7 5.2 55 12-73 199-254 (410)
13 2e6m_A Werner syndrome ATP-dep 57.0 9.9 0.00034 37.7 4.7 56 11-73 137-195 (208)
14 1yt3_A Ribonuclease D, RNAse D 52.3 15 0.0005 40.3 5.5 56 11-73 114-170 (375)
15 3qex_A DNA polymerase, GP43; d 46.2 22 0.00076 43.9 6.2 52 14-73 289-344 (903)
16 1vk0_A Hypothetical protein; h 45.5 16 0.00055 37.1 4.2 51 12-70 152-204 (206)
17 2gv9_A DNA polymerase; polymer 45.4 23 0.00077 45.1 6.3 51 14-73 497-554 (1193)
18 3pv8_A DNA polymerase I; DNA p 44.3 11 0.00038 44.2 3.1 55 12-73 123-181 (592)
19 3k59_A POL II, DNA polymerase 43.2 23 0.0008 43.0 5.7 56 13-73 294-355 (786)
20 3iay_A DNA polymerase delta ca 42.2 24 0.00083 43.5 5.8 54 13-71 411-467 (919)
21 3cym_A Uncharacterized protein 41.8 19 0.00067 40.5 4.5 55 12-73 132-187 (440)
22 2kfn_A Klenow fragment of DNA 41.5 56 0.0019 38.2 8.4 58 12-73 132-193 (605)
23 3esl_A Checkpoint serine/threo 28.8 51 0.0017 33.9 4.6 51 137-187 32-89 (202)
24 1msw_D DNA-directed RNA polyme 26.2 7.6E+02 0.026 30.5 15.0 58 619-676 624-697 (883)
25 1s5j_A DNA polymerase I; repli 25.9 47 0.0016 40.5 4.5 51 14-73 343-397 (847)
26 2jek_A RV1873; structural geno 23.1 38 0.0013 33.1 2.4 52 28-84 89-140 (145)
No 1
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=100.00 E-value=1.3e-243 Score=2129.05 Aligned_cols=824 Identities=46% Similarity=0.803 Sum_probs=706.4
Q ss_pred CCCCcccccccc--cHHHHHHHhcCCccCCcccccccccCCHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhCCC
Q psy15891 2 TDESWTNVSSLN--SLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLFLERFPH 79 (899)
Q Consensus 2 ~~~~W~~~sS~N--sL~dV~~~~c~g~~~dK~~Rd~F~~~~~~~i~~~f~~Lm~YCA~DV~aT~~v~~~l~P~F~~~~~~ 79 (899)
++++|+++||+| ||+|||+|||++.+|||++||+||+|+++||++|||+||+|||+||.|||+||++|||+|
T Consensus 274 ~~~~W~~~sS~N~~SL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F------ 347 (1172)
T 3ikm_A 274 SSWDWLDISSVNSNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLF------ 347 (1172)
T ss_dssp --CCCCCCCCTTSHHHHHHHTCSSCSCS--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred cCCCcccccCCCcCCHHHHHHHhCCCcccChhhHhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------
Confidence 467899999999 999999999955699999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhccccccccCchhhHHHHHhhcchhhhcCCCcchhhhhhccccccccCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy15891 80 PVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSL 159 (899)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PHPvt~agml~mgs~~LPvn~~W~~y~~~ae~~y~~~~~~~~~~ 159 (899)
++||||||||||||||||+|||||+||++||++||.+|++++.+|+++
T Consensus 348 --------------------------------~ercPHPVsfAgml~mgs~~LPVn~~W~~Yi~~ae~~Y~~~~~ev~~~ 395 (1172)
T 3ikm_A 348 --------------------------------LERCPHPVTLAGMLEMGVSYLPVNQNWERYLAEAQGTYEELQREMKKS 395 (1172)
T ss_dssp --------------------------------HTTSCCSHHHHHHHHHHSCCCCCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------HHhCCCchhHHHHHHhCCccccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCccCCcccccCCCCchhhhhccccccccccCcccC-------CcchhhhhccCCCCchhHHHHHH
Q psy15891 160 LMDKCDQACSLLHDDKYKDSLWLWDQDWSVKDLKLKKKANKTLSVDQETE-------EPEEFYEINKNGEDQTEDEFVKR 232 (899)
Q Consensus 160 L~~~a~~a~~~~~~~~~~~DpWl~~ldWs~~~~k~~k~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~ 232 (899)
|+++|++||++++++.|++||||||||||+|++||||.+++||....... ++....+.+++|.+.+++++. .
T Consensus 396 L~~lA~~a~~l~~~~~yk~DpWL~qLDWs~q~~k~kk~~~~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~-~ 474 (1172)
T 3ikm_A 396 LMDLANDACQLLSGERYKEDPWLWDLEWDLQEFKQKKAKKVKKEPATASKLPIEGAGAPGDPMDQEDLGPCSEEEEFQ-Q 474 (1172)
T ss_dssp HHHHHHHHHHHCCCSCTTSTHHHHHHHHCCCSCCCCCCCSCSCCCCCSSCCCCCCCSSSCCCCCCCCCCCSSCCSSSS-H
T ss_pred HHHHHHHHHHhhccccccCCchHhhccCCcccccccccccccccccccccccccccCCcccccccccCCCchhhhhhh-c
Confidence 99999999999999999999999999999999999998765552222111 111112346678777766655 3
Q ss_pred HHHHHHhhccccccccCCCCCCCCCCCChhhhHhhhcCCCCCCchhhhhhhhcccCCCCCCCCCCCCCcccccccchhhh
Q psy15891 233 RRELVEKFKPLMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAWIPGPSLISTSMQITPK 312 (899)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~p~~~~~~~g~P~Wyr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~is~~~ri~P~ 312 (899)
......+|++|++|.+++|+++|+|||||+|||+||++... ++|.|||++||++|||+|+
T Consensus 475 ~~~~~~~~~~l~~t~~~~P~~~~~lpG~P~WYr~L~~~~~~--------------------~~w~~~~~~is~~~ri~P~ 534 (1172)
T 3ikm_A 475 DVMARACLQKLKGTTELLPKRPQHLPGHPGWYRKLCPRLDD--------------------PAWTPGPSLLSLQMRVTPK 534 (1172)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSSSSSSCCCCSSCCSSCCCC--------------------CCCCSSSCCTTTTSTTTTT
T ss_pred ccchhhhhhhhhhcccccchhccCCCCCCHHHHHHhccccc--------------------cccCCCcccccccccHHHH
Confidence 45567789999999999999999999999999999997643 7899999999999999999
Q ss_pred hhccccCCcceeEEcCcceEEeecCCCCCCCCCccCCchHHhhhh----hcccccc--------------cccccccchh
Q psy15891 313 LLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLEQLKQL----YNNITKQ--------------DNCEANVDNA 374 (899)
Q Consensus 313 LlrL~W~g~Pl~~~~~~GW~f~VP~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--------------~~~~~~~~~~ 374 (899)
||||+|+||||||+++|||||+||++.+++ .+.|++++.+. | |+++. ++...+.+++
T Consensus 535 LLrL~W~g~PL~~s~~~GW~flVP~~~d~~----~~~p~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (1172)
T 3ikm_A 535 LMALTWDGFPLHYSERHGWGYLVPGRRDNL----AKLPTGTTLESAGVVC-PYRAIESLYRKHCLEQGKQQLMPQEAGLA 609 (1172)
T ss_dssp TTTCCCTTSCSCCCSSSCBCCCCCCSSSCC----CCCSHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HhhcccCCcceeEECCCCceEecCCccccc----cccccchhhhcccccC-chhHHHhhhhhhhhhhccccccccccchh
Confidence 999999999999999999999999987753 36777776654 5 54431 1223455667
Q ss_pred hhhhhhcccccchhhhchhhhhhHHH--HH------------------hhhhhhhhcccCCCCCCCCCCCCCCeeEEEec
Q psy15891 375 QNSLRDSVETNISFIDCSKSAKRLEV--IA------------------NVLDKKKLAEASSTDTSTDDADTPREIGFIKL 434 (899)
Q Consensus 375 ~~~l~~~~~~~~~~~~~~~~~~~~~~--~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~kl 434 (899)
++.+.++....|..++++++++.... +. ....+|.+|+|+|+|||++ +++ |+||||
T Consensus 610 ~~~~~~~~~~~w~~~~~~~~~e~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~g~~~d~~---~~~-~~ffKL 685 (1172)
T 3ikm_A 610 EEFLLTDNSAIWQTVEELDYLEVEAEAKMENLRAAVPGQPLALTARGGPKDTQPSYHHGNGPYNDVD---IPG-CWFFKL 685 (1172)
T ss_dssp ---------------------------------CCSCSSHHHHHHSSCSCSSCCTTCSSCCTTTSCC---TTC-CCBCCC
T ss_pred hhhhhccccccchhhhhhhhhhhccccccccccccccccccccccccccccccccccccCCcccccc---CCC-ceEEeC
Confidence 77888887777877777666532211 00 0114677899999999987 777 999999
Q ss_pred cCCCCCCCCCCCCcchhhhhHhhcCCCCC--CchHHHHHHHHHhhhhhhhhhhhhhhcceeEecccCCCchhhhhcccc-
Q psy15891 435 PHKDGEHLNVGNPLSRDFINKFSDNSLAG--VDIGAKRIIEISRMLSYWRNNHERVKKQFVVWLNKKDLPRRLVENIES- 511 (899)
Q Consensus 435 PHkdG~~~nvg~plsK~fl~~fe~g~L~s--~~~~a~~~le~~~~~syW~s~r~Ri~~q~vv~~~~~~l~~~~~~~~~~- 511 (899)
|||||+++||||||||+|+++||+|+|+| ++++|++||+||++||||+|+|+||++|||||+++.++|+.+..++++
T Consensus 686 PHkdG~~~nvgsPLsK~fl~~fE~G~L~s~~~~~~A~~aLe~n~~~SYW~saRdRI~sQmVVw~~~~~~p~~~~~~~~~~ 765 (1172)
T 3ikm_A 686 PHKDGNSCNVGSPFAKDFLPKMEDGTLQAGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYD 765 (1172)
T ss_dssp CCTTTCSSCCCCSSCSTHHHHHHTSSCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSSSTTTTTTTTCCC
T ss_pred CCCCCCCCCcCCcccHHHHHHHHhCccccccCcHHHHHHHHHHHHhHHHHHHHHHhhhheEEeecccccccccccccccc
Confidence 99999999999999999999999999999 679999999999999999999999999999999999999888877765
Q ss_pred cCCCCCeEeeeeeeccccccccccCccceecCCCCCcccccccceEecCCCceEEEEeccchhhhhhhhccccccccccc
Q psy15891 512 EGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHG 591 (899)
Q Consensus 512 ~~~~dGrIhp~~~~~GTvTGRa~e~tWLSaSnP~~~~~GselRs~f~AppGy~~VgAD~SqiELRIlal~gDA~~s~~~g 591 (899)
+++..|+|||+++++||+||||+|+|||||+||+.+++|++||+||+||+||+|||||||||||||++++||+.+++.|+
T Consensus 766 ~~~~~g~I~p~v~~~GtvT~Ra~~~~~~tas~~~~~~~GreiR~aFva~~G~~lvsADySQIELRIAals~D~~l~~~~g 845 (1172)
T 3ikm_A 766 EEGLYGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG 845 (1172)
T ss_dssp SSSCCCBCCCCCCSSCTTTCCCCCTTGGGCCCCSSCSTTSCCHHHHCCCTTEEEEEEECTTHHHHHHHHHHHHHSSSTTC
T ss_pred ccccCceeeeeeeecCccccccccCCcceecCCCCChhhHHhHheEeCCCCCEEEEecccHHHHHHHHHcCChhhccccc
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred ccccccccccCccCCCCchhHHHHHHhccchhhhhHHHHHHhhcccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhChhh
Q psy15891 592 ATPLGWMTLSGQKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKGK 671 (899)
Q Consensus 592 ~~Afg~m~LeG~K~~GtDlHs~tAs~lGisR~~AKv~nyG~iYGaG~k~A~~La~q~n~~lS~eEA~~~~~~f~~~~pgv 671 (899)
++|||||+|+|++.+|+|||+.||+.+||+|+.||++|||+|||+|.+||.+|++++|+++|.+||++++++||+.|||+
T Consensus 846 ~~A~~~~~L~~af~~g~DIH~~TA~~vgi~Rr~AK~vNFGiIYG~g~~~a~gL~~ql~~~is~~eAk~~i~~yf~~y~gv 925 (1172)
T 3ikm_A 846 CTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGL 925 (1172)
T ss_dssp STTTTTTCSCCTTTCTHHHHHHHHHTTCCCSHHHHHHHHHHHHSCCTHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHCS
T ss_pred ccchhhhhhhhhhccCCcHHHHHHHHhCCChhhchheeeehhcCCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhh---HHHHHH------hcCeeecchhh-hhcccCC-----cccccCCCccccCCCchhhhhhhHHHhhccCCC
Q psy15891 672 KLYRLKDG---HLEELI------KRVYSKYEARE-VCSAYNT-----SVDKIFDKPQWYGGTESAMFNRLEEIATSLQPV 736 (899)
Q Consensus 672 ~~~~~~~e---~~~~a~------e~GyV~~~~~~-~~~~~~~-----~v~tl~GRrr~~gGteS~~Fn~LE~iA~~~~Pr 736 (899)
+.|++..+ +++++. +.|||++++.+ +++.+.+ .+ ++++||+|+|||||+|||+||+||.++.|+
T Consensus 926 ~~y~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~~~s~~~~~-~~~~r~~w~GGtES~mFNkLE~iA~s~~P~ 1004 (1172)
T 3ikm_A 926 RWYRLSDEGEWLVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKW-EVVAERAWKGGTESEMFNKLESIATSDIPR 1004 (1172)
T ss_dssp SSSCSSSCHHHHHHHHHSSSSCCCCSSCCCCCCCHHHHSCSSSCHHHHT-TTTTTHHHHHHHHHHHHSCSSSSSCCSSSC
T ss_pred hhhhhccccchhhhhccccccccccccchhhhhhhhhhccccccccccc-cccccceecCChhHHHHHHHHHHhccCCCC
Confidence 99976533 334433 68999987775 2333222 22 799999999999999999999999999999
Q ss_pred ccccccccccccCCCccccchhhhhhhhhhhchHHHHHHHHHHHHHHHhccCCc---eeEEEecceeEEecCcchHHHHH
Q psy15891 737 TPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSRDT---RFVISIHDEIRYLVPDEEKYETA 813 (899)
Q Consensus 737 tP~Lg~~i~~aL~~~~~~~~~~~rsavN~vIQGSAADilklamv~m~~L~~~~~---rlvlsVHDEI~~eVpee~~~~aA 813 (899)
||+|||+|++||++++ .++.|+|+|+||+||||||||+|++||+|+||++.|+ |+||||||||+|+|+++++||+|
T Consensus 1005 TP~LGc~It~AL~~~~-~~~~~~~sriNw~iQsSa~D~lhl~~v~m~~l~~~~~l~ar~~l~vHDEl~~~v~~~dkyRaA 1083 (1172)
T 3ikm_A 1005 TPVLGCCISRALEPSA-VQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAA 1083 (1172)
T ss_dssp CCC----------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCBCCCCBTTEEEEEEESTTHHHHH
T ss_pred CCcccchhhhhhCccc-cccchhhhhhchhccchHHHHHHHHHHHHHHHHHHhCCCceEEEEEcceEEEeccHHHHHHHH
Confidence 9999999999999998 7999999999999999999999999999999999886 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCcccccccccccccccccccCCCccCCCCccCCCccccCCCCcccCHHHHHHhcCCC
Q psy15891 814 LALHVTNLLTRAFCIKKLDMTDIPLSISFFSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANGV 893 (899)
Q Consensus 814 ~aLqianl~tramf~~~lg~~dlP~svAffs~vdid~vlRKEv~~dc~TPSnp~~~~~~y~Ip~Gesldi~~~l~~~~g~ 893 (899)
+||||+|||||||||+|+||+||||||||||+|||||||||||||||+|||||+||++||+|||||||||++||+||||+
T Consensus 1084 LALQIaNLwTRamFa~~lGi~DLPqsvAFFSaVDID~VLRKEVdmdCvTPSnp~gl~~~y~IP~GEsLdI~~lLekt~gs 1163 (1172)
T 3ikm_A 1084 LALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDRCLRKEVTMDCKTPSNPTGMERRYGIPQGEALDIYQIIELTKGS 1163 (1172)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCCHHHHTCSCCEEESSCCSSGGGCCCCSSSSCSCSSSCSCCCCCBCCHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccccccccchhhhhhhccCCcccCCCCCCccccCCCCCCCceecHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy15891 894 IG 895 (899)
Q Consensus 894 l~ 895 (899)
|.
T Consensus 1164 L~ 1165 (1172)
T 3ikm_A 1164 LE 1165 (1172)
T ss_dssp CS
T ss_pred cc
Confidence 86
No 2
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=100.00 E-value=7.9e-53 Score=489.13 Aligned_cols=321 Identities=18% Similarity=0.270 Sum_probs=250.1
Q ss_pred CCCCCCCCCcchhhhhHhhcCCCCC------CchHHHHHHHHHh----hhhhhhhhhhhhhcceeEecccCCCchhhhhc
Q psy15891 439 GEHLNVGNPLSRDFINKFSDNSLAG------VDIGAKRIIEISR----MLSYWRNNHERVKKQFVVWLNKKDLPRRLVEN 508 (899)
Q Consensus 439 G~~~nvg~plsK~fl~~fe~g~L~s------~~~~a~~~le~~~----~~syW~s~r~Ri~~q~vv~~~~~~l~~~~~~~ 508 (899)
|..+|.+||....-+ .|++..|.. ++++..++|+..+ .+.-.+.||+- .+....|.+ .|+..+
T Consensus 239 g~~fN~~Spkql~~~-Lf~~lgl~~~kktktg~st~~~vL~~l~~~~p~~~~ile~R~l-~kl~sty~~--~l~~~v--- 311 (592)
T 3pv8_A 239 GQEFNINSPKQLGVI-LFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQL-GKLQSTYIE--GLLKVV--- 311 (592)
T ss_dssp TSCCCTTCHHHHHHH-HHTTSCCCCCCEETTEECCCHHHHHHTTTTCTHHHHHHHHHHH-HHHHHHHTH--HHHHHS---
T ss_pred CCCCCCCCHHHHHHH-HHHHcCCCCCCCCCCCCCchHHHHHHHHhhcchHHHHHHHHHH-HHHHHHHHH--HHHHhh---
Confidence 556788888543322 255544432 3456666776322 23333344432 112223333 133221
Q ss_pred ccccCCCCCeEeeeeeeccccccccccCccceecCCCCCccc------ccccceEec-CCCceEEEEeccchhhhhhhhc
Q psy15891 509 IESEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVG------SELRAMIQA-PDGYSIIGADVDSQELWIASVI 581 (899)
Q Consensus 509 ~~~~~~~dGrIhp~~~~~GTvTGRa~e~tWLSaSnP~~~~~G------selRs~f~A-ppGy~~VgAD~SqiELRIlal~ 581 (899)
...+|||||+|+|+||+||| +|+++||.++++ +++|++|+| ++||+||+||||||||||+
T Consensus 312 ----~~~~gRih~~~~q~~t~TGR------lss~~PNlQniP~~~~~g~~iR~~Fv~~~~g~~lv~aDySqiElRil--- 378 (592)
T 3pv8_A 312 ----RPATKKVHTIFNQALTQTGR------LSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVL--- 378 (592)
T ss_dssp ----BTTTTEECCEEESSCCSSSC------CEEESSCCSSCCCSSHHHHGGGGGEECSSTTEEEEEEEETTHHHHHH---
T ss_pred ----ccCCCEECceeeeCCceeeC------cccccCCccccCcCchhhHhhhhEEEecCCCCEEEEechhhHHHHHH---
Confidence 13479999999999999999 999999987765 679999998 8999999999999999999
Q ss_pred ccccccc-cccccccccccccCccCCCCchhHHHHHHh-ccc--------hhhhhHHHHHHhhcccHHHHHHHHHHhCCC
Q psy15891 582 GDSYCAK-EHGATPLGWMTLSGQKSNATDMHSITAKAV-GIS--------REHAKIINYARIYGAGERFAERLLKQFNPE 651 (899)
Q Consensus 582 gDA~~s~-~~g~~Afg~m~LeG~K~~GtDlHs~tAs~l-Gis--------R~~AKv~nyG~iYGaG~k~A~~La~q~n~~ 651 (899)
||+|+ ..++++| .+|.|+|+.||+.+ |++ |+.||++|||++||+| +.+|++++|
T Consensus 379 --Ahls~D~~l~~af---------~~g~Dih~~tA~~~fg~~~~~vt~~~R~~aK~~~fg~~YG~~---~~~La~~l~-- 442 (592)
T 3pv8_A 379 --AHIAEDDNLMEAF---------RRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGIS---DYGLAQNLN-- 442 (592)
T ss_dssp --HHHHTCHHHHHHH---------HTTCCHHHHHHHHHHSCCTTTCCHHHHHHHHHHHHHHHTTCC---HHHHHHHHT--
T ss_pred --HHHcCCHHHHHHH---------hcCCCHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHhcCC---hHHHHHHcC--
Confidence 99999 8999999 78999999999987 874 9999999999999999 999999999
Q ss_pred CCHHHHHHHHHHHHHhChhhHHHHhhhhHHHHHHhcCeeecchhhhhcccCCcccccCCCccccCCCchhhhhhhHHHhh
Q psy15891 652 MSKSDAKSKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEEIAT 731 (899)
Q Consensus 652 lS~eEA~~~~~~f~~~~pgv~~~~~~~e~~~~a~e~GyV~~~~~~~~~~~~~~v~tl~GRrr~~gGteS~~Fn~LE~iA~ 731 (899)
+|.+||++++++||+.||+++.|++. ++++|+++|||+ |++||||+
T Consensus 443 i~~~eA~~~i~~~~~~~p~v~~~~~~--~~~~a~~~Gyv~---------------Tl~GRrr~----------------- 488 (592)
T 3pv8_A 443 ISRKEAAEFIERYFESFPGVKRYMEN--IVQEAKQKGYVT---------------TLLHRRRY----------------- 488 (592)
T ss_dssp CCHHHHHHHHHHHHHHCHHHHHHHHH--HHHHHHHHSEEE---------------CTTCCEEE-----------------
T ss_pred CCHHHHHHHHHHHHHHChhHHHHHHH--HHHHHHHcCCEE---------------CCCCCeee-----------------
Confidence 99999999999999999999999987 889999999998 99999999
Q ss_pred ccCCCccccccccccccCCCccccchhhhhhhhhhhchHHHHHHHHHHHHH-HHhccC--CceeEEEecceeEEecCcch
Q psy15891 732 SLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCM-RWLVSR--DTRFVISIHDEIRYLVPDEE 808 (899)
Q Consensus 732 ~~~PrtP~Lg~~i~~aL~~~~~~~~~~~rsavN~vIQGSAADilklamv~m-~~L~~~--~~rlvlsVHDEI~~eVpee~ 808 (899)
+|.++++... .++...|+++|++||||||||+|++|+.+ ++|.+. ..+++++||||++|+||+++
T Consensus 489 -----~p~i~s~n~~-------~r~~~eR~a~N~~iQGsaAdi~k~ami~i~~~l~~~~~~~~l~lqVHDElv~ev~~~~ 556 (592)
T 3pv8_A 489 -----LPDITSRNFN-------VRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE 556 (592)
T ss_dssp -----CGGGGCSSHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSEEEEEEEGGG
T ss_pred -----CCCccccchh-------hhhhhhhhhhchhhhhHHHHHHHHHHHHHHHHHHhcCCCceEEEEEcceeEEEeCHHH
Confidence 5666554321 35667899999999999999999999999 555442 24999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccccc
Q psy15891 809 KYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSGVEID 849 (899)
Q Consensus 809 ~~~aA~aLqianl~tramf~~~lg~~dlP~svAffs~vdid 849 (899)
+++++..++ ..|..+ +. .+||+.|..-.+.+|.
T Consensus 557 ~~~~~~~v~--~~Me~a-----~~-l~VPl~v~~~~G~~W~ 589 (592)
T 3pv8_A 557 MERLCRLVP--EVMEQA-----VT-LRVPLKVDYHYGSTWY 589 (592)
T ss_dssp HHHHHHHHH--HHHHTS-----SC-CSSCCCEEEEEESSTT
T ss_pred HHHHHHHHH--HHHhhc-----cc-CCCcEEEEecccCCHH
Confidence 998775543 344443 22 2678877655555543
No 3
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=100.00 E-value=1.6e-52 Score=482.00 Aligned_cols=256 Identities=22% Similarity=0.341 Sum_probs=222.0
Q ss_pred CCCCeEeeeeeeccccccccccCccceecCCCCCccc------ccccceEecCCCceEEEEeccchhhhhhhhccccccc
Q psy15891 514 RDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVG------SELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCA 587 (899)
Q Consensus 514 ~~dGrIhp~~~~~GTvTGRa~e~tWLSaSnP~~~~~G------selRs~f~AppGy~~VgAD~SqiELRIlal~gDA~~s 587 (899)
..+|||||+|+|+||+||| ||+++||.++++ .++|++|+|++||+||+||||||||||+ ||+|
T Consensus 263 ~~~gRih~~~~q~~t~TGR------lSs~~PNlQniP~~~~~g~~iR~~f~a~~G~~lv~aDySqiElRvl-----Ahls 331 (540)
T 4dfk_A 263 PRTGRLHTRFNQTATATGR------LSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVL-----AHLS 331 (540)
T ss_dssp TTTCSBCCEEESSCCSSSC------CEEESSCCSCCCCSSHHHHHHHTTEECCTTEEEEEEEETTHHHHHH-----HHHH
T ss_pred CCCCEEeeeeecCcccccC------ccccCCcceeeeccCcchHhhhheEeCCCCCEEEEecHHHHHHHHH-----HHHc
Confidence 3689999999999999999 999999988766 5799999999999999999999999999 9999
Q ss_pred c-cccccccccccccCccCCCCchhHHHHHHh-cc--------chhhhhHHHHHHhhcccHHHHHHHHHHhCCCCCHHHH
Q psy15891 588 K-EHGATPLGWMTLSGQKSNATDMHSITAKAV-GI--------SREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDA 657 (899)
Q Consensus 588 ~-~~g~~Afg~m~LeG~K~~GtDlHs~tAs~l-Gi--------sR~~AKv~nyG~iYGaG~k~A~~La~q~n~~lS~eEA 657 (899)
+ ..++++| .+|.|+|+.||+.+ |+ .|+.||++|||++||+| +.+|++++| +|.+||
T Consensus 332 ~D~~l~~af---------~~g~Dih~~tA~~~fg~~~~~v~~~~R~~aK~~~fg~~YG~~---~~~La~~lg--is~~eA 397 (540)
T 4dfk_A 332 GDENLIRVF---------QEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMS---AHRLSQELA--IPYEEA 397 (540)
T ss_dssp CCHHHHHHH---------HTTCCHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHHHHTTCC---HHHHHHHHT--CCHHHH
T ss_pred CCHHHHHHH---------hcCCCHHHHHHHHHcCCChhhcCHHHHhHHHHHHHhhhhCCc---hhHHHHHcC--CCHHHH
Confidence 8 8999999 78999999999987 87 49999999999999999 999999999 999999
Q ss_pred HHHHHHHHHhChhhHHHHhhhhHHHHHHhcCeeecchhhhhcccCCcccccCCCccccCCCchhhhhhhHHHhhccCCCc
Q psy15891 658 KSKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEEIATSLQPVT 737 (899)
Q Consensus 658 ~~~~~~f~~~~pgv~~~~~~~e~~~~a~e~GyV~~~~~~~~~~~~~~v~tl~GRrr~~gGteS~~Fn~LE~iA~~~~Prt 737 (899)
++++++||+.||+++.|++. +++++.++|||+ |++||||+ +
T Consensus 398 ~~~i~~~~~~~p~v~~~~~~--~~~~a~~~Gyv~---------------Tl~GRrr~----------------------~ 438 (540)
T 4dfk_A 398 QAFIERYFQSFPKVRAWIEK--TLEEGRRRGYVE---------------TLFGRRRY----------------------V 438 (540)
T ss_dssp HHHHHHHHHHSTHHHHHHHH--HHHHHHHHSEEE---------------CTTCCEEE----------------------C
T ss_pred HHHHHHHHHhChhHHHHHHH--HHHHHHhCCcEE---------------CCCCCeec----------------------C
Confidence 99999999999999999987 889999999998 99999999 5
Q ss_pred cccccccccccCCCccccchhhhhhhhhhhchHHHHHHHHHHHHH-HHhccCCceeEEEecceeEEecCcchHHHHHHHH
Q psy15891 738 PFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCM-RWLVSRDTRFVISIHDEIRYLVPDEEKYETALAL 816 (899)
Q Consensus 738 P~Lg~~i~~aL~~~~~~~~~~~rsavN~vIQGSAADilklamv~m-~~L~~~~~rlvlsVHDEI~~eVpee~~~~aA~aL 816 (899)
|.++++... .++...|+++|++||||||||+|++|+.+ ++|.+...+++++||||++|+||++++++++..+
T Consensus 439 p~~~s~~~~-------~r~~aeR~a~N~~iQGsaAdi~K~ami~~~~~l~~~~~~l~lqVHDElv~ev~~~~~~~~~~~v 511 (540)
T 4dfk_A 439 PDLEARVKS-------VREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLA 511 (540)
T ss_dssp GGGGCSSHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSEEEEEEEGGGHHHHHHHH
T ss_pred CccccccHH-------HHhhhhhhHhhhhhHhHHHHHHHHHHHHHHHHHHhcCCeEEEEEcceEEEEeCHHHHHHHHHHH
Confidence 555544321 46677899999999999999999999999 5665545799999999999999999999887654
Q ss_pred HHHHHHHHHHhhccCCCCCCCccccccccccc
Q psy15891 817 HVTNLLTRAFCIKKLDMTDIPLSISFFSGVEI 848 (899)
Q Consensus 817 qianl~tramf~~~lg~~dlP~svAffs~vdi 848 (899)
+ ..|..+ +.+ +||+.|..-.+.+|
T Consensus 512 ~--~~Me~a-----~~l-~VPl~v~~~~G~~W 535 (540)
T 4dfk_A 512 K--EVMEGV-----YPL-AVPLEVEVGIGEDW 535 (540)
T ss_dssp H--HHHHTS-----SCC-SSCCCEEEEEESBH
T ss_pred H--HHHhcc-----cCC-CCceEEeeeecCCH
Confidence 4 333333 223 67877654444333
No 4
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=100.00 E-value=1.6e-52 Score=487.66 Aligned_cols=255 Identities=22% Similarity=0.354 Sum_probs=219.9
Q ss_pred CCCeEeeeeeeccccccccccCccceecCCCCCccc------ccccceEecCCCceEEEEeccchhhhhhhhcccccccc
Q psy15891 515 DYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVG------SELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAK 588 (899)
Q Consensus 515 ~dGrIhp~~~~~GTvTGRa~e~tWLSaSnP~~~~~G------selRs~f~AppGy~~VgAD~SqiELRIlal~gDA~~s~ 588 (899)
++|||||+|+++||+||| +|+++||.++++ +++|++|+|++||+||+||||||||||+ ||+|+
T Consensus 328 ~~grih~~~~~~~t~TGR------lss~~PnlQniP~r~~~g~~iR~~f~~~~g~~lv~aDysqiElRil-----A~ls~ 396 (605)
T 2kfn_A 328 KTGRVHTSYHQAVTATGR------LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIM-----AHLSR 396 (605)
T ss_dssp TTSSBCCEEESSCCSSSC------CEEESSCGGGSCSSSHHHHHHHHTBBCCTTEEEEEEEETTHHHHHH-----HHHTT
T ss_pred ccCeecceeEecccccCc------eecCCCCcccCCCCccchHhHhheeeCCCCCEEEEechhhhHHHHH-----HHHcC
Confidence 359999999999999999 999999987665 7899999999999999999999999999 99998
Q ss_pred -cccccccccccccCccCCCCchhHHHHHHh-ccc--------hhhhhHHHHHHhhcccHHHHHHHHHHhCCCCCHHHHH
Q psy15891 589 -EHGATPLGWMTLSGQKSNATDMHSITAKAV-GIS--------REHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAK 658 (899)
Q Consensus 589 -~~g~~Afg~m~LeG~K~~GtDlHs~tAs~l-Gis--------R~~AKv~nyG~iYGaG~k~A~~La~q~n~~lS~eEA~ 658 (899)
..++++| .+|.|+|+.||+.+ |++ |+.||++|||++||+| +.+|++++| +|.+||+
T Consensus 397 d~~l~~af---------~~g~Dih~~tA~~~f~~~~e~vt~~~R~~aK~~~fg~~YG~~---~~~la~~l~--i~~~ea~ 462 (605)
T 2kfn_A 397 DKGLLTAF---------AEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMS---AFGLARQLN--IPRKEAQ 462 (605)
T ss_dssp CHHHHHHH---------HTTCCHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTTCC---TTHHHHHHT--CCTTTHH
T ss_pred CHHHHHHH---------hcCCCHHHHHHHHHhCCChhhcCHHHHhhhhhhhccccccCC---HHHHHHHcC--CCHHHHH
Confidence 8999999 78999999999987 865 9999999999999999 999999999 9999999
Q ss_pred HHHHHHHHhChhhHHHHhhhhHHHHHHhcCeeecchhhhhcccCCcccccCCCccccCCCchhhhhhhHHHhhccCCCcc
Q psy15891 659 SKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEEIATSLQPVTP 738 (899)
Q Consensus 659 ~~~~~f~~~~pgv~~~~~~~e~~~~a~e~GyV~~~~~~~~~~~~~~v~tl~GRrr~~gGteS~~Fn~LE~iA~~~~PrtP 738 (899)
+++++||+.||+++.|++. +++++.+.|||+ |++||||+ +|
T Consensus 463 ~~i~~~~~~~p~v~~~~~~--~~~~a~~~g~v~---------------tl~GRrr~----------------------~p 503 (605)
T 2kfn_A 463 KYMDLYFERYPGVLEYMER--TRAQAKEQGYVE---------------TLDGRRLY----------------------LP 503 (605)
T ss_dssp HHHHHHHHHCHHHHHHHHH--HHHHHHHHSEEE---------------CTTCCEEE----------------------CT
T ss_pred HHHHHHHHHCccHHHHHHH--HHHHHHHcCcEE---------------CCCCCeEE----------------------CC
Confidence 9999999999999999977 889999999997 99999999 45
Q ss_pred ccccccccccCCCccccchhhhhhhhhhhchHHHHHHHHHHHHHH-HhccC--CceeEEEecceeEEecCcchHHHHHHH
Q psy15891 739 FLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMR-WLVSR--DTRFVISIHDEIRYLVPDEEKYETALA 815 (899)
Q Consensus 739 ~Lg~~i~~aL~~~~~~~~~~~rsavN~vIQGSAADilklamv~m~-~L~~~--~~rlvlsVHDEI~~eVpee~~~~aA~a 815 (899)
.+++... ..++...|+++|++||||||||+|++|+.+. +|.+. ..+++++||||++|+||++++++++..
T Consensus 504 ~~~s~~~-------~~r~~~~r~a~N~~iQgsaaDi~k~am~~~~~~l~~~~~~~~~~l~vHDEl~~ev~~~~~~~~~~~ 576 (605)
T 2kfn_A 504 DIKSSNG-------ARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQ 576 (605)
T ss_dssp TTTCSSH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEEETTEEEEEEETTTHHHHHHH
T ss_pred cccCCCc-------hhhhhhhhhHhhHHhHHHHHHHHHHHHHHHHHHHHhcCCCceeeEEeccEEEEEcCHHHHHHHHHH
Confidence 5444332 1356678999999999999999999999994 45432 249999999999999999998887654
Q ss_pred HHHHHHHHHHHhhccCCCCCCCccccccccccc
Q psy15891 816 LHVTNLLTRAFCIKKLDMTDIPLSISFFSGVEI 848 (899)
Q Consensus 816 Lqianl~tramf~~~lg~~dlP~svAffs~vdi 848 (899)
+ .++|..++ . .+||+.|..-.+.+|
T Consensus 577 v--~~~M~~~~---~---l~vpl~v~~~~g~~W 601 (605)
T 2kfn_A 577 I--HQLMENCT---R---LDVPLLVEVGSGENW 601 (605)
T ss_dssp H--HHHHHHSS---C---SSSCCCEEEEEESBH
T ss_pred H--HHHHhccC---C---CCCeEEEecccCCCh
Confidence 3 35555553 2 268888765444443
No 5
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=6e-51 Score=488.56 Aligned_cols=318 Identities=21% Similarity=0.333 Sum_probs=240.6
Q ss_pred CCCCCCCCCcchhhhhHhhcCCCC-------CC-chHHHHHHHHHh----hhhhhhhhhhhhhcceeEecccCCCchhhh
Q psy15891 439 GEHLNVGNPLSRDFINKFSDNSLA-------GV-DIGAKRIIEISR----MLSYWRNNHERVKKQFVVWLNKKDLPRRLV 506 (899)
Q Consensus 439 G~~~nvg~plsK~fl~~fe~g~L~-------s~-~~~a~~~le~~~----~~syW~s~r~Ri~~q~vv~~~~~~l~~~~~ 506 (899)
|..+|++||..-.=+ .|++..|. ++ +++..++|+.-+ .+.-.+.+|+- .+....|.+ .|+..+
T Consensus 479 g~~fN~~Spkql~~~-Lf~~lglp~~kkt~ktG~~sT~~~vL~~l~~~~p~~~~ile~R~l-~Kl~sty~~--~l~~~v- 553 (832)
T 1bgx_T 479 GHPFNLNSRDQLERV-LFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYREL-TKLKSTYID--PLPDLI- 553 (832)
T ss_dssp SSCCCCSCHHHHTTT-TTTSCCCCCCCSSCCSSSSGGGTSTTTTGGGTCSTTHHHHTHHHH-SCSBTTBCC--CTTTSS-
T ss_pred CCCcCCCCHHHHHHH-HHHhcCCCCcccccccCCccchHHHHHHhHhcCcHHHHHHHHHHH-HHHHHHHHH--HHHHhh-
Confidence 556777777432211 14443332 22 355555665321 23334444442 333334443 244321
Q ss_pred hcccccCCCCCeEeeeeeeccccccccccCccceecCCCCCcc------cccccceEecCCCceEEEEeccchhhhhhhh
Q psy15891 507 ENIESEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERV------GSELRAMIQAPDGYSIIGADVDSQELWIASV 580 (899)
Q Consensus 507 ~~~~~~~~~dGrIhp~~~~~GTvTGRa~e~tWLSaSnP~~~~~------GselRs~f~AppGy~~VgAD~SqiELRIlal 580 (899)
...+|||||+|+|+||+||| +|+++||.+++ |+++|++|+|++||+||+||||||||||+
T Consensus 554 ------~~~~gRih~~~~q~~t~TGR------lSs~~PNLQNiP~~~~~g~~iR~~Fva~~G~~lv~aDySqiElRil-- 619 (832)
T 1bgx_T 554 ------HPRTGRLHTRFNQTATATGR------LSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVL-- 619 (832)
T ss_dssp ------CTTTCSBCCEEESSCCSSSC------CEEESSCTTSCCCSSTTTTTTGGGBCCCSSCCEEEEEESSHHHHHH--
T ss_pred ------CCCCCEEeeeeEecccceee------eecCCccccccccCchhhHHhhheEeCCCCCEEEEechhhhHHHHH--
Confidence 23679999999999999999 99999987655 46899999999999999999999999999
Q ss_pred cccccccc-cccccccccccccCccCCCCchhHHHHHHh-ccc--------hhhhhHHHHHHhhcccHHHHHHHHHHhCC
Q psy15891 581 IGDSYCAK-EHGATPLGWMTLSGQKSNATDMHSITAKAV-GIS--------REHAKIINYARIYGAGERFAERLLKQFNP 650 (899)
Q Consensus 581 ~gDA~~s~-~~g~~Afg~m~LeG~K~~GtDlHs~tAs~l-Gis--------R~~AKv~nyG~iYGaG~k~A~~La~q~n~ 650 (899)
||+|+ ..++++| .+|.|+|+.||+.+ |++ |+.||++|||++||+| +.+|++++|
T Consensus 620 ---Ahls~D~~l~~af---------~~g~Dih~~tA~~~fg~~~e~vt~~~R~~aK~~nfgi~YG~~---~~gLa~~lg- 683 (832)
T 1bgx_T 620 ---AHLSGDENLIRVF---------QEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMS---AHRLSQELA- 683 (832)
T ss_dssp ---HHTTTCTTHHHHH---------HHTCCHHHHHHHHHHTCCTTSCCTTHHHHHHHHHHHTTSCCC---HHHHHHHSS-
T ss_pred ---HHHcCCHHHHHHH---------hcCCCHHHHHHHHHhCCChhhcCHHHHHHHHHHHHhhhcCCc---hhHHHHHcC-
Confidence 99998 8999999 78999999999877 874 9999999999999999 999999999
Q ss_pred CCCHHHHHHHHHHHHHhChhhHHHHhhhhHHHHHHhcCeeecchhhhhcccCCcccccCCCccccCCCchhhhhhhHHHh
Q psy15891 651 EMSKSDAKSKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEEIA 730 (899)
Q Consensus 651 ~lS~eEA~~~~~~f~~~~pgv~~~~~~~e~~~~a~e~GyV~~~~~~~~~~~~~~v~tl~GRrr~~gGteS~~Fn~LE~iA 730 (899)
+|.+||++++++||++||+++.|++. ++++|.++|||+ |++||||+
T Consensus 684 -is~~eA~~~i~~~~~~~p~v~~~~~~--~~~~a~~~Gyv~---------------Tl~GRrr~---------------- 729 (832)
T 1bgx_T 684 -IPYEEAQAFIERYFQSFPKVRAWIEK--TLEEGRRRGYVE---------------TLFGRRRY---------------- 729 (832)
T ss_dssp -CCHHHHHHHHHHHHHHCHHHHHHHHH--HTHHHHTTSSCC---------------CSSCCCCC----------------
T ss_pred -CCHHHHHHHHHHHHHHCccHHHHHHH--HHHHHHHCCeEE---------------ecCCCEEE----------------
Confidence 99999999999999999999999977 889999999997 99999999
Q ss_pred hccCCCccccccccccccCCCccccchhhhhhhhhhhchHHHHHHHHHHHHH-HHhccCCceeEEEecceeEEecCcchH
Q psy15891 731 TSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCM-RWLVSRDTRFVISIHDEIRYLVPDEEK 809 (899)
Q Consensus 731 ~~~~PrtP~Lg~~i~~aL~~~~~~~~~~~rsavN~vIQGSAADilklamv~m-~~L~~~~~rlvlsVHDEI~~eVpee~~ 809 (899)
+|.+++.... .++...|+++|++||||||||+|+||+.+ ++|.+...+++++||||++|+||++++
T Consensus 730 ------~p~i~s~~~~-------~r~~~eR~a~N~~iQGsAADiik~Ami~~~~~l~~~~~~lvlqVHDElv~evp~~~~ 796 (832)
T 1bgx_T 730 ------VPDLEARVKS-------VREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERA 796 (832)
T ss_dssp ------CGGGSCSSHH-------HHHHHHHHHTTHHHHTHHHHHHHTHHHHHHHHHHHHTCEEEEEETTEEEEEC----C
T ss_pred ------CCcccCCCcc-------hhhhhhhhhccHhhHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeccEEEEEcCHHHH
Confidence 5655544321 35667899999999999999999999999 555443459999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCccccccccc
Q psy15891 810 YETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSGV 846 (899)
Q Consensus 810 ~~aA~aLqianl~tramf~~~lg~~dlP~svAffs~v 846 (899)
++++..++ .+|..++ .+ +||+.|..-.+.
T Consensus 797 ~~~~~~v~--~~M~~a~---~l---~VPl~v~~~~G~ 825 (832)
T 1bgx_T 797 EAVARLAK--EVMEGVY---PL---AVPLEVEVGIGE 825 (832)
T ss_dssp HHHHHHHH--HHHHSSS---CC---SSCCCEECCEES
T ss_pred HHHHHHHH--HHHhccC---CC---CCeEEEecccCC
Confidence 87765433 3333331 22 578777543333
No 6
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=100.00 E-value=2.6e-49 Score=467.54 Aligned_cols=308 Identities=19% Similarity=0.142 Sum_probs=235.8
Q ss_pred CCCCCCCCcchhhhhHhhcCCCCC------C-chHHHHHHHHH-----------hhhhhhhhhhhhhhcceeEecccCCC
Q psy15891 440 EHLNVGNPLSRDFINKFSDNSLAG------V-DIGAKRIIEIS-----------RMLSYWRNNHERVKKQFVVWLNKKDL 501 (899)
Q Consensus 440 ~~~nvg~plsK~fl~~fe~g~L~s------~-~~~a~~~le~~-----------~~~syW~s~r~Ri~~q~vv~~~~~~l 501 (899)
..+|.+||..-.-+ .|+-| |.. + +++.+++|+.- +.+..|+...+++. +++. ....+
T Consensus 326 ~~fn~~S~~ql~~~-L~~lg-l~~~~~t~~G~~st~~~vL~~l~~~~~~~~p~~~~lle~r~l~kl~s-ty~~--~~~~l 400 (698)
T 1x9m_A 326 VVFNPSSRDHIQKK-LQEAG-WVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIG-QSAE--GDKAW 400 (698)
T ss_dssp ECCCTTCHHHHHHH-HHHTT-CCCCCBCTTSCBCCSHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH-HHTT--STTCH
T ss_pred cccCCCCHHHHHHH-HHHCC-CCCCCcCCCCCcCCCHHHHHHHHhhcccCChHHHHHHHHHHHHHHHH-hhhh--hHHHH
Confidence 56899998643322 14433 432 2 25666777633 34566666666654 5431 11233
Q ss_pred chhhhhcccccCCCCCeEeeeeeeccccccccccCccceecCCCCCcccc-------cccceEec--------CCCceEE
Q psy15891 502 PRRLVENIESEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGS-------ELRAMIQA--------PDGYSII 566 (899)
Q Consensus 502 ~~~~~~~~~~~~~~dGrIhp~~~~~GTvTGRa~e~tWLSaSnP~~~~~Gs-------elRs~f~A--------ppGy~~V 566 (899)
+.. ...+|||||+++++||+||| +|+++||.+++++ ++|+||+| |||++||
T Consensus 401 ~~~--------v~~dgrih~~~~~~gt~TGR------lSs~~PNlQniP~~~~~~g~~iR~~F~a~~~~~~~~~~G~~lv 466 (698)
T 1x9m_A 401 LRY--------VAEDGKIHGSVNPNGAVTGR------ATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQA 466 (698)
T ss_dssp HHH--------CCTTSEECCEEETTCSTTSC------CEEESSCTTCCCCTTSTTHHHHHHTBSGGGSBCTTTCCBCEEE
T ss_pred HHh--------cCCCCeEeeeEEeccccccc------cccCCccceeecccccccchhhhheeecCcccccCCCCCCEEE
Confidence 332 23579999999999999999 9999999876665 89999999 9999999
Q ss_pred EEeccchhhhhhhhccccccc---c-cccccccccccccCccCCCCchhHHHHHHhccc-hhhhhHHHHHHhhcccHHHH
Q psy15891 567 GADVDSQELWIASVIGDSYCA---K-EHGATPLGWMTLSGQKSNATDMHSITAKAVGIS-REHAKIINYARIYGAGERFA 641 (899)
Q Consensus 567 gAD~SqiELRIlal~gDA~~s---~-~~g~~Afg~m~LeG~K~~GtDlHs~tAs~lGis-R~~AKv~nyG~iYGaG~k~A 641 (899)
+||||||||||+ ||+| + ..++++| .+| |||+.||+.+|++ |+.||++|||++||+| +
T Consensus 467 ~aDySqiElRil-----Ahls~~~~D~~l~~af---------~~g-DiH~~tA~~~gv~~R~~aK~~nfg~~YG~g---~ 528 (698)
T 1x9m_A 467 GIDASGLELRCL-----AHFMARFDNGEYAHEI---------LNG-DIHTKNQIAAELPTRDNAKTFIYGFLYGAG---D 528 (698)
T ss_dssp EEEETTHHHHHH-----HHHHHHHHTTHHHHHH---------HHS-CHHHHHHHHSCCSSHHHHHHHHHHHHTTCC---H
T ss_pred EEehhhhHHHHH-----HHHhhhcCcHHHHHHH---------hCC-CHhHHHHHHhCCchHhhhHHHHHccccCCC---H
Confidence 999999999999 9999 7 8899999 677 9999999977997 9999999999999999 9
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhChhhHHHHhh------------hhHHHHHHhcCeeecchhhhhcccCCcccccC
Q psy15891 642 ERLLKQFNPEMSKSDAKSKARKMYTLTKGKKLYRLK------------DGHLEELIKRVYSKYEAREVCSAYNTSVDKIF 709 (899)
Q Consensus 642 ~~La~q~n~~lS~eEA~~~~~~f~~~~pgv~~~~~~------------~e~~~~a~e~GyV~~~~~~~~~~~~~~v~tl~ 709 (899)
.+|++++| +|.+||++++++||+.||+++.|+.. +++++++.+.|||+ |++
T Consensus 529 ~~La~~lg--is~~eA~~~i~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~a~~~gyv~---------------tl~ 591 (698)
T 1x9m_A 529 EKIGQIVG--AGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIK---------------GLD 591 (698)
T ss_dssp HHHHTTTT--CCHHHHHHHHHHHHHTCHHHHHHHHHHHHTTBC----------CCBSCSEEE---------------CTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHHCcCHHHHHHHhHhhhhhhhhHHHHHHHHHHhCCeEE---------------ccC
Confidence 99999998 99999999999999999999999422 11455566788886 999
Q ss_pred CCccccCCCchhhhhhhHHHhhccCCCccccccccccccCCCccccchhhhhhhhhhhchHHHHHHHHHHHHH-HHhccC
Q psy15891 710 DKPQWYGGTESAMFNRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCM-RWLVSR 788 (899)
Q Consensus 710 GRrr~~gGteS~~Fn~LE~iA~~~~PrtP~Lg~~i~~aL~~~~~~~~~~~rsavN~vIQGSAADilklamv~m-~~L~~~ 788 (899)
||||++ ++ .|+++|++||||||||+|+||+.+ ++|.+.
T Consensus 592 GRrr~~---------------------------------------r~--~r~a~N~~iQGsaAdi~k~am~~i~~~l~~~ 630 (698)
T 1x9m_A 592 GRKVHV---------------------------------------RS--PHAALNTLLQSAGALICKLWIIKTEEMLVEK 630 (698)
T ss_dssp SCEEEC---------------------------------------SC--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeeec---------------------------------------cc--hhhHhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 999982 12 578999999999999999999999 556442
Q ss_pred -C-------ceeEEEecceeEEecCcch-HHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccc
Q psy15891 789 -D-------TRFVISIHDEIRYLVPDEE-KYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSGVE 847 (899)
Q Consensus 789 -~-------~rlvlsVHDEI~~eVpee~-~~~aA~aLqianl~tramf~~~lg~~dlP~svAffs~vd 847 (899)
+ .+++++|||||+|+||+++ +++++..++ ..|.++..- +. .+||+.|..-.+.+
T Consensus 631 ~~~~~~~~~~~lvl~VHDElv~ev~~~~~~~~~~~~~~--~~M~~a~~~--~~-l~vPl~~~~~~G~~ 693 (698)
T 1x9m_A 631 GLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQ--EAMRWVGDH--WN-FRCLLDTEGKMGPN 693 (698)
T ss_dssp TCCBSTTSSEEEEEEETTEEEEEESSHHHHHHHHHHHH--HHHHHHHHH--TT-CSSCCCEEEEEESS
T ss_pred CCCcccCcceeEEEEeccEEEEEecchhHHHHHHHHHH--HHHHhhhhc--cC-CCeeEEEecccCcC
Confidence 2 3999999999999999998 888776655 344444211 12 25788775443333
No 7
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=97.90 E-value=3.7e-06 Score=102.42 Aligned_cols=44 Identities=32% Similarity=0.450 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhhhhCCCcchhhhhhccccccccCchhhHHHHHhh
Q psy15891 60 LATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQAL 107 (899)
Q Consensus 60 ~aT~~v~~~l~P~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (899)
.+...||-..+-.| ||||||||||+||.+|||||++|.+||+..
T Consensus 338 ~V~~kl~P~F~erc----PHPVsfAgml~mgs~~LPVn~~W~~Yi~~a 381 (1172)
T 3ikm_A 338 EVFQQQLPLFLERC----PHPVTLAGMLEMGVSYLPVNQNWERYLAEA 381 (1172)
T ss_dssp HHHHHHHHHHHTTS----CCSHHHHHHHHHHSCCCCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC----CCchhHHHHHHhCCccccCCccHHHHHHHH
Confidence 46778999999999 999999999999999999999999998764
No 8
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=82.22 E-value=1.7 Score=48.08 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=39.1
Q ss_pred cHHHHHHHhcCCccC--CcccccccccCCHHHHHHHHHHHHHHhHHhHHHHHHHHHH--HHHHh
Q psy15891 14 SLSEVYKLYCEGKVL--DKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQA--LFPLF 73 (899)
Q Consensus 14 sL~dV~~~~c~g~~~--dK~~Rd~F~~~~~~~i~~~f~~Lm~YCA~DV~aT~~v~~~--l~P~F 73 (899)
||..|++..++-.+. +++.-+.|. ++.+.|..||..||..|.++|.+ ++|..
T Consensus 286 sL~~Va~~~Lg~~K~d~~~~i~~~~~--------~~~~~l~~Y~~~D~~l~~~L~~kl~~l~~~ 341 (388)
T 1noy_A 286 SLESVAQHETKKGKLPYDGPINKLRE--------TNHQRYISYNIIDVESVQAIDKIRGFIDLV 341 (388)
T ss_dssp SHHHHHHHHHSCCCCCCSSCGGGHHH--------HHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CHHHHHHHHhCCCCCCcHHHHHHHHH--------hCHHHHHHHHHHHHHHHHHHHHHHChHHHH
Confidence 599999888832233 233333332 67889999999999999999999 78877
No 9
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=69.59 E-value=3.8 Score=46.31 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=42.9
Q ss_pred ccHHHHHHHhcCCccCCccc-ccccccCCHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q psy15891 13 NSLSEVYKLYCEGKVLDKTD-RNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLF 73 (899)
Q Consensus 13 NsL~dV~~~~c~g~~~dK~~-Rd~F~~~~~~~i~~~f~~Lm~YCA~DV~aT~~v~~~l~P~F 73 (899)
.||+++..-|| |..++|.. +..|..-++. .+.+.|+|.||.++.++|.+|.+..
T Consensus 223 ~gL~~Lv~~~L-g~~l~K~~~~sdW~~rpLs------~~q~~YAA~DA~~ll~L~~~L~~~L 277 (428)
T 3saf_A 223 HSLDHLLKLYC-NVDSNKQYQLADWRIRPLP------EEMLSYARDDTHYLLYIYDKMRLEM 277 (428)
T ss_dssp CSHHHHHHHHH-CCCCCCTTTTSCTTCSSCC------HHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHc-CCCCCccccccccccCCCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999 99999864 3334433432 2346899999999999999999998
No 10
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=68.50 E-value=1.9 Score=50.44 Aligned_cols=56 Identities=11% Similarity=-0.066 Sum_probs=35.1
Q ss_pred ccHHHHHHHhcCCccCCcccccccccCCHHHH-HHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q psy15891 13 NSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDI-ENNWHNLMTYCAKDTLATFEVIQALFPLF 73 (899)
Q Consensus 13 NsL~dV~~~~c~g~~~dK~~Rd~F~~~~~~~i-~~~f~~Lm~YCA~DV~aT~~v~~~l~P~F 73 (899)
-||+.|++..+ ... . +..|--.-++.+ .+.-+++..||..||..|++|+.+.|+..
T Consensus 128 ~SL~~~a~~f~-~~~-~---K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~f~~~ 184 (575)
T 2py5_A 128 FPVKKIAKDFK-LTV-L---KGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQFKQG 184 (575)
T ss_dssp SCHHHHHHHTT-CCC-C---SSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhC-Ccc-c---CCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 59999998887 221 1 122210000000 02456789999999999999999876544
No 11
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=64.33 E-value=5.9 Score=47.87 Aligned_cols=52 Identities=27% Similarity=0.446 Sum_probs=37.7
Q ss_pred ccHHHHHHHhcCCccCCcccccccccCCHHHHHH------HHHHHHHHhHHhHHHHHHHHHHHHHHh
Q psy15891 13 NSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIEN------NWHNLMTYCAKDTLATFEVIQALFPLF 73 (899)
Q Consensus 13 NsL~dV~~~~c~g~~~dK~~Rd~F~~~~~~~i~~------~f~~Lm~YCA~DV~aT~~v~~~l~P~F 73 (899)
-||..|++.+| |. .|.. -+.++|.+ .++.|+.||..||..|..++.+++|.-
T Consensus 273 ysL~~Va~~~L-g~--~K~d------v~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~~~ 330 (775)
T 1qht_A 273 YTLEAVYEAVF-GK--PKEK------VYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFPME 330 (775)
T ss_dssp CCHHHHHHHHH-CC--CCCC------CCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHh-CC--CCCc------cCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 48999998888 43 1211 12333333 358899999999999999999988865
No 12
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=58.17 E-value=9.2 Score=42.74 Aligned_cols=55 Identities=13% Similarity=0.055 Sum_probs=43.5
Q ss_pred cccHHHHHHHhcCCccCCccccc-ccccCCHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q psy15891 12 LNSLSEVYKLYCEGKVLDKTDRN-IFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLF 73 (899)
Q Consensus 12 ~NsL~dV~~~~c~g~~~dK~~Rd-~F~~~~~~~i~~~f~~Lm~YCA~DV~aT~~v~~~l~P~F 73 (899)
-.||.++.+-|| |..++|..+- .|..-++.+ +.+.|+|.||.+++++|.+|....
T Consensus 199 ~~~L~~L~~~~l-g~~l~K~~~~sdW~~rpL~~------~q~~YAa~Da~~ll~L~~~L~~~L 254 (410)
T 2hbj_A 199 RHSLAYLLENFA-NFKTSKKYQLADWRIRPLSK------PMTAAARADTHFLLNIYDQLRNKL 254 (410)
T ss_dssp CCSHHHHHHHHS-CCCCCCTTTTSCTTCSSCCH------HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHc-CCCCCccccccCCCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999 8888987542 443333332 367999999999999999999998
No 13
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=56.96 E-value=9.9 Score=37.72 Aligned_cols=56 Identities=27% Similarity=0.134 Sum_probs=39.7
Q ss_pred ccccHHHHHHHhcCCccCCcccccccc---cCCHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q psy15891 11 SLNSLSEVYKLYCEGKVLDKTDRNIFV---EGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLF 73 (899)
Q Consensus 11 S~NsL~dV~~~~c~g~~~dK~~Rd~F~---~~~~~~i~~~f~~Lm~YCA~DV~aT~~v~~~l~P~F 73 (899)
+-.||.++++-|+ |..+.|.....|. .-+++ ++...|+|.||.+++++|.+|.+..
T Consensus 137 ~~~~L~~L~~~~l-~~~~~K~k~~~~s~W~~~~L~------~~q~~YAa~Da~~~~~L~~~L~~~L 195 (208)
T 2e6m_A 137 ETWSLNGLVKHVL-GKQLLKDKSIRCSNWSNFPLT------EDQKLYAATDAYAGLIIYQKLGNLG 195 (208)
T ss_dssp CCCCHHHHHHHHH-SCBCCCCHHHHTSCTTSSSCC------HHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CChhHHHHHHHHc-CCCcCCCCCeeeCCCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4568999999999 7777553222332 21222 2357999999999999999998775
No 14
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=52.31 E-value=15 Score=40.29 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=42.7
Q ss_pred ccccHHHHHHHhcCCccCCcccc-cccccCCHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q psy15891 11 SLNSLSEVYKLYCEGKVLDKTDR-NIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLF 73 (899)
Q Consensus 11 S~NsL~dV~~~~c~g~~~dK~~R-d~F~~~~~~~i~~~f~~Lm~YCA~DV~aT~~v~~~l~P~F 73 (899)
+-.||+++.+-|| |..++|..+ ..|..-++++ +...|+|.||.+++++|.++.+..
T Consensus 114 ~~~~L~~L~~~~l-~~~l~K~~~~sdw~~rpL~~------~q~~YAa~Da~~l~~L~~~L~~~L 170 (375)
T 1yt3_A 114 MSWGFASMVEEYS-GVTLDKSESRTDWLARPLTE------RQCEYAAADVWYLLPITAKLMVET 170 (375)
T ss_dssp TTCCHHHHHHHHH-CCCCCCTTTTSCTTSSSCCH------HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHc-CCCCCCCcccCCCCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999 888888654 2343322221 357899999999999999999887
No 15
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=46.17 E-value=22 Score=43.87 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=37.2
Q ss_pred cHHHHHHHhcCCc--cCCcccccccccCCHHHHHHHHHHHHHHhHHhHHHHHHHHHH--HHHHh
Q psy15891 14 SLSEVYKLYCEGK--VLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQA--LFPLF 73 (899)
Q Consensus 14 sL~dV~~~~c~g~--~~dK~~Rd~F~~~~~~~i~~~f~~Lm~YCA~DV~aT~~v~~~--l~P~F 73 (899)
||..|++...+-. .++.+.-+.| .++.+.|..||-+||..|.++|.+ ++|..
T Consensus 289 sLd~VA~~lLg~~K~d~~~~I~~~~--------~~d~~~L~~Ycl~Da~Lt~~L~~Kl~li~~~ 344 (903)
T 3qex_A 289 SLDYISEFELNVGKLKYDGPISKLR--------ESNHQRYISYNIIAVYRVLQIDAKRQFINLS 344 (903)
T ss_dssp CHHHHHHHHHCCCCCCCSSCGGGHH--------HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CHHHHHHHHcCCCccccHHHHHHHH--------hcCHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7999987777322 2332222222 256789999999999999999998 77765
No 16
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=45.52 E-value=16 Score=37.14 Aligned_cols=51 Identities=10% Similarity=-0.042 Sum_probs=37.6
Q ss_pred cccHHHHHHHhcCCccC-Ccc-cccccccCCHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q psy15891 12 LNSLSEVYKLYCEGKVL-DKT-DRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALF 70 (899)
Q Consensus 12 ~NsL~dV~~~~c~g~~~-dK~-~Rd~F~~~~~~~i~~~f~~Lm~YCA~DV~aT~~v~~~l~ 70 (899)
--||+++.+-++ |..+ +|+ .+..... .+.+ +=+.|.|.||.+.++||.+|.
T Consensus 152 ~~gL~~Lv~~~l-g~~lK~k~~~~SdW~~-pLs~------~Qi~YAA~Da~~l~~l~~~L~ 204 (206)
T 1vk0_A 152 FLGTRELAHRVL-WSDLGQLDSIEAKWEK-AGPE------EQLEAAAIEGWLIVNVWDQLS 204 (206)
T ss_dssp GCCHHHHHHHHH-CCCCHHHHHHHHTGGG-SCHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHh-CCcCCCCCcccCCCCC-cCCH------HHHHHHHHHHHHHHHHHHHHH
Confidence 358999999898 8999 333 3444444 4432 336899999999999999985
No 17
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=45.37 E-value=23 Score=45.07 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=35.6
Q ss_pred cHHHHHHHhcCCccCCcccccccccCCHHHHHHH-------HHHHHHHhHHhHHHHHHHHHHHHHHh
Q psy15891 14 SLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENN-------WHNLMTYCAKDTLATFEVIQALFPLF 73 (899)
Q Consensus 14 sL~dV~~~~c~g~~~dK~~Rd~F~~~~~~~i~~~-------f~~Lm~YCA~DV~aT~~v~~~l~P~F 73 (899)
||..|++..++..+.| -+.++|.+- ...|..||-.||..|.++|.+++|.+
T Consensus 497 sL~~Va~~~Lg~~K~d---------v~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl~~~l 554 (1193)
T 2gv9_A 497 KLNAVAEAVLKDKKKD---------LSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKFLPHL 554 (1193)
T ss_dssp CHHHHHHHTSCCCCCC---------CCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CHHHHHHHHhccCCCC---------CCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999998888322221 122333333 34688999999999999999998866
No 18
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=44.29 E-value=11 Score=44.25 Aligned_cols=55 Identities=9% Similarity=0.218 Sum_probs=41.8
Q ss_pred cccHHHHHHHhcCCccCCcccccccccCC----HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q psy15891 12 LNSLSEVYKLYCEGKVLDKTDRNIFVEGS----LEDIENNWHNLMTYCAKDTLATFEVIQALFPLF 73 (899)
Q Consensus 12 ~NsL~dV~~~~c~g~~~dK~~Rd~F~~~~----~~~i~~~f~~Lm~YCA~DV~aT~~v~~~l~P~F 73 (899)
-.+|.++++-|+ |..+++.. +++.+|. +.+ .....|+|.||.+|++++.+|.|..
T Consensus 123 ~~~L~~La~~yL-g~~l~~~e-e~~gkg~~~~~~~~-----e~~~~YAa~DA~~l~~L~~~L~~~L 181 (592)
T 3pv8_A 123 VDDVAAAAKMKQ-YEAVRPDE-AVYGKGAKRAVPDE-----PVLAEHLVRKAAAIWELERPFLDEL 181 (592)
T ss_dssp CCSHHHHHGGGT-CCSSCCHH-HHHCSGGGCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHc-CCCCchHH-HhcCccccccCccH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999 88776542 3343331 111 5578999999999999999999988
No 19
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=43.16 E-value=23 Score=42.98 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=36.3
Q ss_pred ccHHHHHHHhcCCccCCcccccccccCCHHHHHHH----HHHHHHHhHHhHHHHHHHHHH--HHHHh
Q psy15891 13 NSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENN----WHNLMTYCAKDTLATFEVIQA--LFPLF 73 (899)
Q Consensus 13 NsL~dV~~~~c~g~~~dK~~Rd~F~~~~~~~i~~~----f~~Lm~YCA~DV~aT~~v~~~--l~P~F 73 (899)
-+|..|++..++..+.+ -+.+ .+.++|-+- -+.|..||-+||..|.++|.+ ++|..
T Consensus 294 ysL~~Va~~~Lg~~K~~---~~~~--~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl~ll~~~ 355 (786)
T 3k59_A 294 FSLETVAQELLGEGKSI---DNPW--DRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKTEIMPFL 355 (786)
T ss_dssp CSHHHHHHHHHCCCCC----CCHH--HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHhCCCCcc---cCcc--ccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 38999998888322221 0000 012444333 358999999999999999999 46755
No 20
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=42.24 E-value=24 Score=43.53 Aligned_cols=54 Identities=17% Similarity=0.296 Sum_probs=35.1
Q ss_pred ccHHHHHHHhcCCccC--C-cccccccccCCHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q psy15891 13 NSLSEVYKLYCEGKVL--D-KTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFP 71 (899)
Q Consensus 13 NsL~dV~~~~c~g~~~--d-K~~Rd~F~~~~~~~i~~~f~~Lm~YCA~DV~aT~~v~~~l~P 71 (899)
-+|..|++.+++..+. + ++.-+.|. ++. ++.+.|+.||..||..|.++|.++-.
T Consensus 411 ysL~~Va~~~Lg~~K~dv~~~~I~~l~~-~~~----~~~~~L~~Y~~~Da~l~~~L~~kl~~ 467 (919)
T 3iay_A 411 YTLNAVSAHFLGEQKEDVHYSIISDLQN-GDS----ETRRRLAVYCLKDAYLPLRLMEKLMA 467 (919)
T ss_dssp CCHHHHHHHHHCCC------CCHHHHHT-SCH----HHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CCHHHHHHHhcccCCCCCCHHHHHHHHh-cCh----hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3789999888832222 1 12222232 122 24678999999999999999999743
No 21
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=41.82 E-value=19 Score=40.54 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=42.8
Q ss_pred cccHHHHHHHhcCCccCCcccc-cccccCCHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q psy15891 12 LNSLSEVYKLYCEGKVLDKTDR-NIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLF 73 (899)
Q Consensus 12 ~NsL~dV~~~~c~g~~~dK~~R-d~F~~~~~~~i~~~f~~Lm~YCA~DV~aT~~v~~~l~P~F 73 (899)
-.+|.++..-|| |..++|..+ ..|..-++++ +...|+|.||.++.++|.+|....
T Consensus 132 ~~gL~~L~~~~l-g~~~~K~~~~sdw~~rpLs~------~q~~YAa~Da~~Ll~L~~~L~~~L 187 (440)
T 3cym_A 132 RFGLAAVTEHFL-GLTLAKEHSAADWSYRPLPR------DWRNYAALDVELLIELETKMRAEL 187 (440)
T ss_dssp SCSHHHHHHHHH-CEECCCCCTTCCTTCSSCCH------HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHh-CCCcccccccCCCcCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999 888888654 2454323222 357999999999999999999988
No 22
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=41.53 E-value=56 Score=38.20 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=37.4
Q ss_pred cccHHHHHHHhcCCccCCcccccccccC----CHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHh
Q psy15891 12 LNSLSEVYKLYCEGKVLDKTDRNIFVEG----SLEDIENNWHNLMTYCAKDTLATFEVIQALFPLF 73 (899)
Q Consensus 12 ~NsL~dV~~~~c~g~~~dK~~Rd~F~~~----~~~~i~~~f~~Lm~YCA~DV~aT~~v~~~l~P~F 73 (899)
-.+|.++++-|+ |....+ ..+++.+| +..++ ...+...||+.||.+|.++|.+|.+..
T Consensus 132 ~~~L~~La~~~L-g~~~i~-~~~~~gKg~~~~~~~~~--~le~~~~yAa~Da~~~~~L~~~L~~~L 193 (605)
T 2kfn_A 132 RHDMDSLAERWL-KHKTIT-FEEIAGKGKNQLTFNQI--ALEEAGRYAAEDADVTLQLHLKMWPDL 193 (605)
T ss_dssp CCSHHHHHHHHS-CCCCCC-HHHHHCSSTTCCCGGGS--CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhc-CCCccc-HHHHhCCCcccCCcccC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999998 544321 01122222 11110 013467999999999999999999987
No 23
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=28.77 E-value=51 Score=33.87 Aligned_cols=51 Identities=10% Similarity=0.359 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh-ccCCCccCCc-----ccccCCC
Q psy15891 137 NWVKYFNESCQTFNDLNVEMKSLLM-DKCDQACSL-LHDDKYKDSL-----WLWDQDW 187 (899)
Q Consensus 137 ~W~~y~~~ae~~y~~~~~~~~~~L~-~~a~~a~~~-~~~~~~~~Dp-----Wl~~ldW 187 (899)
-|.+||.=.++.|-......+..|. .+-+.+.+. .+++.|++|| ||+=.|.
T Consensus 32 ~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~ 89 (202)
T 3esl_A 32 LFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINL 89 (202)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh
Confidence 5999999999999876654455555 666666554 4678999997 8776665
No 24
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Probab=26.18 E-value=7.6e+02 Score=30.48 Aligned_cols=58 Identities=16% Similarity=0.015 Sum_probs=36.0
Q ss_pred ccchhhhhHHHHHHhhcccHHHH-HHHHHHhCC---------CC-CH-H----HHHHHHHHHHHhChhhHHHHh
Q psy15891 619 GISREHAKIINYARIYGAGERFA-ERLLKQFNP---------EM-SK-S----DAKSKARKMYTLTKGKKLYRL 676 (899)
Q Consensus 619 GisR~~AKv~nyG~iYGaG~k~A-~~La~q~n~---------~l-S~-e----EA~~~~~~f~~~~pgv~~~~~ 676 (899)
+|+|+..|...-=.+||.+...+ .++.+++.. .. .. + -|+.+.+.+.+.||+....+.
T Consensus 624 ~i~RKvvKqtVMT~vYGvT~~Ga~~qI~~~l~~~~~~~~~~~~~~~~~~~a~yla~~i~~ai~~~f~~a~~im~ 697 (883)
T 1msw_D 624 GVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMN 697 (883)
T ss_dssp CCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCCHHHhccceeeeeeCCcchhhHHHHHHHHhhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999994433 244444310 00 00 1 135556677777888776543
No 25
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=25.86 E-value=47 Score=40.54 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=33.4
Q ss_pred cHHHHHHHhcCCccCCcccccccccCCHHHHHHHHHHHHHHhHHhHHHHHHHHH----HHHHHh
Q psy15891 14 SLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQ----ALFPLF 73 (899)
Q Consensus 14 sL~dV~~~~c~g~~~dK~~Rd~F~~~~~~~i~~~f~~Lm~YCA~DV~aT~~v~~----~l~P~F 73 (899)
||..|++.+++-.+.|-. +.+... +.+.|..||-.||..|.+++. .++|..
T Consensus 343 sL~~Va~~~Lg~~K~dv~--~~i~~~-------~~~~l~~Ycl~Da~lt~~L~~~~~~~~~~~~ 397 (847)
T 1s5j_A 343 NLDAVAKALLGTSKVKVD--TLISFL-------DVEKLIEYNFRDAEITLQLTTFNNDLTMKLI 397 (847)
T ss_dssp SHHHHHHHHHCCCCC--S--SCTTTC-------CHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCcchh--Hhhhhc-------cHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 799999999942222211 111111 478899999999999999953 345554
No 26
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=23.07 E-value=38 Score=33.14 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=37.5
Q ss_pred CCcccccccccCCHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhCCCcchhh
Q psy15891 28 LDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLFLERFPHPVTLA 84 (899)
Q Consensus 28 ~dK~~Rd~F~~~~~~~i~~~f~~Lm~YCA~DV~aT~~v~~~l~P~F~~~~~~~~~~~ 84 (899)
-+++.++|| |++++. +|+..|+--+. |.-...||+.++..|..=-|+|.|+.
T Consensus 89 ~~~sa~~If--G~~D~~--KlrSsMTLFa~-a~~~~~~F~~vL~~~f~G~~D~~Tl~ 140 (145)
T 2jek_A 89 QGRSIEEIF--GPPDDL--KLCSSMTLFAR-ATDANQDFVALLAKYYGGGEDRRTVA 140 (145)
T ss_dssp CSCCHHHHS--CTTHHH--HHHHHHHHHHH-HCSCCHHHHHHHHHHSTTCCCHHHHH
T ss_pred cCCCHHHHc--CChhHH--HHHhHHHHHHH-cCCCchHHHHHHHHHcCCCCCHHHHH
Confidence 368999999 668777 69999997764 33346799999999933335555543
Done!