RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15891
(899 letters)
>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment)
{Escherichia coli [TaxId: 562]}
Length = 410
Score = 46.0 bits (108), Expect = 1e-05
Identities = 53/300 (17%), Positives = 101/300 (33%), Gaps = 68/300 (22%)
Query: 550 GSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATD 609
G +R AP+ Y I+ AD EL I ++ +++ G ++ A +
Sbjct: 168 GRRIRQAFIAPEDYVIVSADYSQIELRIM-----AHLSRDKGLLTAFAEGKDIHRATAAE 222
Query: 610 MHSITAKAVGISRE-HAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLT 668
+ + + V + AK IN+ IYG A L +Q N + + +A+ +
Sbjct: 223 VFGLPLETVTSEQRRSAKAINFGLIYGMS---AFGLARQLN--IPRKEAQKYMDLYFERY 277
Query: 669 KGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEE 728
G V E + V+ + + + +S+ R
Sbjct: 278 PG-----------------VLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGAR--- 317
Query: 729 IATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHL-MLVCMRWLVS 787
+ + IN +Q A D + M+ WL +
Sbjct: 318 --------------------------RAAAERAAINAPMQGTAADIIKRAMIAVDAWLQA 351
Query: 788 R--DTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSG 845
R ++ +HDE+ + V ++ A+A + L+ + D+PL + SG
Sbjct: 352 EQPRVRMIMQVHDELVFEVHKDD--VDAVAKQIHQLMENCTRL------DVPLLVEVGSG 403
>d1x9ma2 e.8.1.1 (A:211-704) T7 phage DNA polymerase {Bacteriophage
T7 [TaxId: 10760]}
Length = 494
Score = 37.4 bits (85), Expect = 0.007
Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 18/117 (15%)
Query: 743 RLSRALEPVSEDDSKFIQTR-----INWVVQSGAVDFLHLMLV---------CMRWLVSR 788
++ + D + + R +N ++QS L ++ ++
Sbjct: 375 QVKWKRRWIKGLDGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDG 434
Query: 789 DTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSG 845
D ++ +HDEI+ EE + + L G
Sbjct: 435 DFAYMAWVHDEIQVGCRTEE-IAQVVIETAQEAMRWVGDHWNF---RCLLDTEGKMG 487
>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment)
{Thermus aquaticus [TaxId: 271]}
Length = 409
Score = 36.5 bits (83), Expect = 0.015
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 756 SKFIQTRINWVVQSGAVDFLHL-MLVCMRWLVSRDTRFVISIHDEIRYLVPDEEKYETAL 814
+ N VQ A D + L M+ L R ++ +HDE+ P E A+
Sbjct: 320 EAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKER--AEAV 377
Query: 815 ALHVTNLLTRAFCIKKLDMTDIPLSISFFSG 845
A ++ + + +PL + G
Sbjct: 378 ARLAKEVMEGVYPL------AVPLEVEVGIG 402
>d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment)
{Bacillus stearothermophilus, newly identified strain as
yet unnamed [TaxId: 1422]}
Length = 408
Score = 36.1 bits (82), Expect = 0.016
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 761 TRINWVVQSGAVDFLHL-MLVCMRWLVSR--DTRFVISIHDEIRYLVPDEEKYETALALH 817
+N +Q A D + M+ L ++ +HDE+ P EE L
Sbjct: 322 MAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE--MERLCRL 379
Query: 818 VTNLLTRAFCIKKLDMTDIPLSISFFSG 845
V ++ +A + +PL + + G
Sbjct: 380 VPEVMEQAVTL------RVPLKVDYHYG 401
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 30.1 bits (67), Expect = 0.59
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 15/118 (12%)
Query: 539 MTAS---NAVGERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPL 595
MT S ++V +R+ ELR ++ + D D D+ W+A++ G E L
Sbjct: 1 MTTSKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKL 60
Query: 596 GWMTLSGQKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMS 653
S + T + + +G + L + +
Sbjct: 61 TLEFPSDYPYKPPVVKFTT------------PCWHPNVDQSGNICLDILKENWTASYD 106
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 30.3 bits (68), Expect = 0.60
Identities = 14/73 (19%), Positives = 27/73 (36%)
Query: 351 LEQLKQLYNNITKQDNCEANVDNAQNSLRDSVETNISFIDCSKSAKRLEVIANVLDKKKL 410
LE K +Y ++ K N + + N+L +++ N + V +V
Sbjct: 24 LETQKNMYESMAKTTNLGDLLGTSTNTLANNLPDNWKEVYSDAMNSSSSVTPSVNSMMGQ 83
Query: 411 AEASSTDTSTDDA 423
A D + +A
Sbjct: 84 FNAEVDDMTPSEA 96
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter
AcrB transmembrane domain {Escherichia coli [TaxId:
562]}
Length = 199
Score = 29.7 bits (66), Expect = 1.2
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 750 PVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSRDTRFVI 794
PV++ + F++ I+ VV++ + + LV +L + +
Sbjct: 25 PVAQYPTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIP 69
>d1t6aa_ d.129.8.1 (A:) Rbstp2229 protein {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 124
Score = 27.9 bits (62), Expect = 2.2
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 338 STDIKVPDAENIPLEQLKQL---YNNITKQDNCEANVDNAQNSLRDSVET 384
+TD+K+P + + +E +KQL Y K+ + Q + +V
Sbjct: 3 NTDLKLPAGKTMTIEDVKQLLERYQMALKKTGEQLGWAYEQAAFPYTVRI 52
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 26.7 bits (59), Expect = 3.3
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 188 SVKDLKLKKKANKTL--SVDQETEEPEEFYEINKNGEDQTEDEFVKRRRELVEKFKPLMQ 245
+V+D KL+ K N + + E + + N + ++EF +++EL + P++
Sbjct: 16 TVEDEKLQGKINDEDKQKILDKCNEIISWLDKN---QTAEKEEFEHQQKELEKVCNPIIT 72
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA
polymerases {Archaeon Thermococcus gorgonarius [TaxId:
71997]}
Length = 347
Score = 27.9 bits (61), Expect = 5.4
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 14 SLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLF 73
+L VY+ I + + Y +D T+E+ + FP+
Sbjct: 274 TLEAVYEAIFGQPKEKVYAEEIA---QAWETGEGLERVARYSMEDAKVTYELGKEFFPME 330
Query: 74 LER 76
+
Sbjct: 331 AQL 333
>d1ev7a_ c.52.1.9 (A:) Restriction endonuclease NaeI {Nocardia
aerocolonigenes [TaxId: 68170]}
Length = 302
Score = 27.6 bits (61), Expect = 6.2
Identities = 13/45 (28%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 531 RRAVEATWMTASNAVGERVGSELRAMIQAPDG----YSIIGADVD 571
R + T +G V L Q DG Y I G VD
Sbjct: 42 RWNFDQLHKTEKTHMGTLVEINLHREFQFGDGFETDYEIAGVQVD 86
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 27.3 bits (60), Expect = 7.1
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 17/71 (23%)
Query: 635 GAGERFAERLL-KQFNPEMSKSDAKSKARK----------------MYTLTKGKKLYRLK 677
G+ A+ L + ++ M+ +A + + T+ G+ +
Sbjct: 164 GSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFT 223
Query: 678 DGHLEELIKRV 688
LEE+IK +
Sbjct: 224 KEELEEVIKDI 234
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.398
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,397,639
Number of extensions: 162392
Number of successful extensions: 394
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 17
Length of query: 899
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 806
Effective length of database: 1,130,706
Effective search space: 911349036
Effective search space used: 911349036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.4 bits)