BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15892
         (80 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9A9E5|SYFB_CAUCR Phenylalanine--tRNA ligase beta subunit OS=Caulobacter crescentus
           (strain ATCC 19089 / CB15) GN=pheT PE=3 SV=1
          Length = 799

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 5   ESDSSSLGSMELEGEGAGGVYIDSDTGLESMSSAE-TPSKPCGLCMDGNASDLYRQEVTQ 63
           E  S S G MELEG  A G       GLE++   E TP++P  L + G A DL    V  
Sbjct: 126 EYASESDGIMELEGSLAVGTPAVDALGLEAVIDFEVTPNRPDWLGVAGIARDLAAAGVGT 185

Query: 64  LK 65
           LK
Sbjct: 186 LK 187


>sp|Q6G1B5|AROE_BARQU Shikimate dehydrogenase OS=Bartonella quintana (strain Toulouse)
          GN=aroE PE=3 SV=1
          Length = 293

 Score = 28.9 bits (63), Expect = 9.4,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 3  MSESDSSSLGSMELEGEGAGGVYIDSDTGLESMSSAETPSKPCGLCMDGNASDLYRQEVT 62
          +  S S  + +  L+  G  G Y+  +  LE  S   T +K  G C  GN +  Y+QE  
Sbjct: 23 IHHSKSPKIHNFWLKQYGLQGEYLAQEVKLEEFSDFLTSTKKRGFC-GGNVTLPYKQEAF 81

Query: 63 QL 64
          +L
Sbjct: 82 RL 83


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.127    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,011,406
Number of Sequences: 539616
Number of extensions: 943004
Number of successful extensions: 2684
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2682
Number of HSP's gapped (non-prelim): 7
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)