Query psy15892
Match_columns 80
No_of_seqs 19 out of 21
Neff 2.4
Searched_HMMs 46136
Date Sat Aug 17 00:18:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3686|consensus 96.5 0.00065 1.4E-08 59.0 0.0 77 2-79 597-697 (740)
2 PF12107 VEK-30: Plasminogen ( 69.7 3.3 7.2E-05 21.0 1.3 12 59-70 3-14 (17)
3 PF08776 VASP_tetra: VASP tetr 65.4 7.8 0.00017 23.2 2.5 23 54-76 13-35 (40)
4 PRK06835 DNA replication prote 61.6 7.3 0.00016 30.3 2.4 23 53-75 66-88 (329)
5 KOG4049|consensus 56.1 4.1 9E-05 32.2 0.2 16 25-40 141-156 (248)
6 PF11807 DUF3328: Domain of un 51.1 7.6 0.00016 25.7 0.8 26 54-79 134-177 (217)
7 PF04880 NUDE_C: NUDE protein, 48.3 6.9 0.00015 28.7 0.4 17 55-71 27-43 (166)
8 KOG1574|consensus 47.3 15 0.00032 30.5 2.1 21 22-42 347-367 (375)
9 PHA03155 hypothetical protein; 35.7 56 0.0012 23.2 3.3 23 52-74 8-30 (115)
10 PF14122 YokU: YokU-like prote 33.0 31 0.00066 23.6 1.6 41 22-62 15-55 (87)
11 PHA03162 hypothetical protein; 31.5 53 0.0012 24.0 2.7 23 52-74 13-35 (135)
12 KOG2492|consensus 31.4 18 0.00039 31.4 0.3 35 43-77 232-277 (552)
13 KOG3863|consensus 29.8 39 0.00085 29.6 2.1 21 54-74 513-533 (604)
14 PF08265 YL1_C: YL1 nuclear pr 29.8 32 0.0007 18.9 1.1 12 21-32 8-19 (30)
15 PF08432 Vfa1: AAA-ATPase Vps4 29.5 54 0.0012 23.4 2.4 14 54-67 64-77 (182)
16 COG0437 HybA Fe-S-cluster-cont 28.6 30 0.00066 26.0 1.1 38 22-68 115-173 (203)
17 PF13062 DUF3924: Protein of u 27.8 13 0.00028 24.0 -0.9 16 60-75 7-22 (62)
18 COG1031 Uncharacterized Fe-S o 27.7 46 0.00099 29.1 2.1 21 44-64 200-227 (560)
19 PF05812 Herpes_BLRF2: Herpesv 25.4 71 0.0015 22.6 2.4 22 53-74 4-25 (118)
20 PF14738 PaaSYMP: Solute carri 25.1 52 0.0011 23.6 1.7 18 58-75 93-110 (154)
21 PF06005 DUF904: Protein of un 25.1 82 0.0018 20.0 2.5 15 55-69 21-35 (72)
22 cd07660 BAR_Arfaptin The Bin/A 24.0 59 0.0013 24.5 1.9 17 55-75 151-167 (201)
23 PRK06921 hypothetical protein; 23.6 68 0.0015 23.9 2.1 22 55-76 4-25 (266)
24 PF00170 bZIP_1: bZIP transcri 22.7 1E+02 0.0023 18.1 2.5 21 55-75 43-63 (64)
25 PF04508 Pox_A_type_inc: Viral 22.6 53 0.0011 17.5 1.0 16 59-74 1-16 (23)
26 PF02183 HALZ: Homeobox associ 22.5 1E+02 0.0022 18.1 2.3 18 55-72 15-32 (45)
27 PF11388 DotA: Phagosome traff 22.2 38 0.00082 23.9 0.5 9 26-34 1-9 (105)
28 PF00990 GGDEF: GGDEF domain; 22.1 40 0.00087 20.3 0.6 8 25-32 2-9 (161)
29 cd00011 BAR_Arfaptin_like The 21.9 71 0.0015 24.1 2.0 18 54-75 153-170 (203)
30 PF14354 Lar_restr_allev: Rest 21.7 39 0.00085 19.4 0.5 6 43-48 4-9 (61)
31 PRK13922 rod shape-determining 20.6 95 0.0021 22.7 2.4 16 54-69 78-93 (276)
32 COG0621 MiaB 2-methylthioadeni 20.6 75 0.0016 26.3 2.0 23 43-65 156-186 (437)
33 PF04325 DUF465: Protein of un 20.3 74 0.0016 18.2 1.4 13 59-71 27-39 (49)
34 PRK14862 rimO ribosomal protei 20.2 85 0.0019 24.9 2.2 24 43-66 151-182 (440)
35 PRK14332 (dimethylallyl)adenos 20.0 91 0.002 25.0 2.3 24 43-66 166-197 (449)
No 1
>KOG3686|consensus
Probab=96.51 E-value=0.00065 Score=59.04 Aligned_cols=77 Identities=13% Similarity=0.056 Sum_probs=59.6
Q ss_pred CCCCCCCC-CCCcccccCCCC----CCccccCCccccccccCCCC----CCCcccccCCC---------------chHHH
Q psy15892 2 GMSESDSS-SLGSMELEGEGA----GGVYIDSDTGLESMSSAETP----SKPCGLCMDGN---------------ASDLY 57 (80)
Q Consensus 2 ~~~~sD~S-Sl~S~dl~~~~~----~~~~~DSDTGlESMSSae~~----~~~Cs~C~d~~---------------~~e~L 57 (80)
+++..+.. ....++.++.++ ++.++++++|+++|++.+.+ ++.|..|.... ..+.+
T Consensus 597 ~~~r~~~~~~~fhv~~e~~~~~~e~~~~~~~a~lg~~~~~~~~~~~~Tla~~~~~~l~~~s~~v~~~~~~~~d~~~~r~~ 676 (740)
T KOG3686|consen 597 ALYRADAEAVGFHVSTEGNGDVQEKWKHAGNAELGSRENTRKKYTRETLATKFCDVLLVLSQVVDKMVRPPVDTASPREF 676 (740)
T ss_pred eecccccccccceecccccceeeccccccccccccceeeeehhhhhhhhhhhhhhhhhhhhhccceeecCcccccchhhc
Confidence 45553333 344677776554 78889999999999999988 46777776432 35999
Q ss_pred HHHHHHhhchhHHHhhhhcccc
Q psy15892 58 RQEVTQLKCDKLDLLRQNVVSR 79 (80)
Q Consensus 58 ~~eV~rLk~dKldLLrQNVscq 79 (80)
+.|+++|++.+++++ ||++|+
T Consensus 677 ~~e~~~l~~~e~~~~-~~~~~~ 697 (740)
T KOG3686|consen 677 CPEFDGLTMSELSQL-RLTVIN 697 (740)
T ss_pred ccccCcccccccchh-cCCccc
Confidence 999999999999999 888886
No 2
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=69.65 E-value=3.3 Score=21.03 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=10.5
Q ss_pred HHHHHhhchhHH
Q psy15892 59 QEVTQLKCDKLD 70 (80)
Q Consensus 59 ~eV~rLk~dKld 70 (80)
.|+.|||+|++|
T Consensus 3 aeLerLknerH~ 14 (17)
T PF12107_consen 3 AELERLKNERHD 14 (17)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 588999999886
No 3
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=65.40 E-value=7.8 Score=23.19 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhhchhHHHhhhhc
Q psy15892 54 SDLYRQEVTQLKCDKLDLLRQNV 76 (80)
Q Consensus 54 ~e~L~~eV~rLk~dKldLLrQNV 76 (80)
++.+|.|+.+.|.|-.|-+||-.
T Consensus 13 L~EvrkEl~K~K~EIIeA~~~eL 35 (40)
T PF08776_consen 13 LEEVRKELQKVKEEIIEAIRQEL 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999854
No 4
>PRK06835 DNA replication protein DnaC; Validated
Probab=61.64 E-value=7.3 Score=30.27 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=21.4
Q ss_pred chHHHHHHHHHhhchhHHHhhhh
Q psy15892 53 ASDLYRQEVTQLKCDKLDLLRQN 75 (80)
Q Consensus 53 ~~e~L~~eV~rLk~dKldLLrQN 75 (80)
..+.|++++..|+.+|.+||++|
T Consensus 66 ~~~~l~~~~~~l~~~~~~lL~~~ 88 (329)
T PRK06835 66 TLKELKEKITDLRVKKAELLVSN 88 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 46999999999999999999987
No 5
>KOG4049|consensus
Probab=56.11 E-value=4.1 Score=32.18 Aligned_cols=16 Identities=50% Similarity=0.609 Sum_probs=13.1
Q ss_pred cccCCccccccccCCC
Q psy15892 25 YIDSDTGLESMSSAET 40 (80)
Q Consensus 25 ~~DSDTGlESMSSae~ 40 (80)
.-|||+|+|+||-.-.
T Consensus 141 vrDSdsGlekMsIGHh 156 (248)
T KOG4049|consen 141 VRDSDSGLEKMSIGHH 156 (248)
T ss_pred hhccccchhhhccccc
Confidence 3599999999997654
No 6
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=51.06 E-value=7.6 Score=25.67 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhhc------h----h--------HHHhhhhcccc
Q psy15892 54 SDLYRQEVTQLKC------D----K--------LDLLRQNVVSR 79 (80)
Q Consensus 54 ~e~L~~eV~rLk~------d----K--------ldLLrQNVscq 79 (80)
+..||+.+-+..- + . +|.|||+|-|.
T Consensus 134 L~~lR~~~~~~~~~~~~~~~~~~~~~~~H~~HC~d~LRq~imC~ 177 (217)
T PF11807_consen 134 LNMLRKAYYPDYYYYPNMTEDPPEEDREHIDHCLDYLRQSIMCH 177 (217)
T ss_pred hHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHhhcc
Confidence 4788888855543 1 1 79999999996
No 7
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=48.28 E-value=6.9 Score=28.69 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhchhHHH
Q psy15892 55 DLYRQEVTQLKCDKLDL 71 (80)
Q Consensus 55 e~L~~eV~rLk~dKldL 71 (80)
|.|+.+|.|||-|--||
T Consensus 27 E~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHCH----------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88999999999997776
No 8
>KOG1574|consensus
Probab=47.28 E-value=15 Score=30.54 Aligned_cols=21 Identities=48% Similarity=0.596 Sum_probs=17.5
Q ss_pred CCccccCCccccccccCCCCC
Q psy15892 22 GGVYIDSDTGLESMSSAETPS 42 (80)
Q Consensus 22 ~~~~~DSDTGlESMSSae~~~ 42 (80)
|.+-.|||||++||+|..++.
T Consensus 347 p~~~~~~~~~~~~~~s~ds~~ 367 (375)
T KOG1574|consen 347 PRNDTDSDTGLSSLHSQDSPS 367 (375)
T ss_pred CCCCcccccchhhhcccCCcc
Confidence 455579999999999998864
No 9
>PHA03155 hypothetical protein; Provisional
Probab=35.71 E-value=56 Score=23.25 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=18.5
Q ss_pred CchHHHHHHHHHhhchhHHHhhh
Q psy15892 52 NASDLYRQEVTQLKCDKLDLLRQ 74 (80)
Q Consensus 52 ~~~e~L~~eV~rLk~dKldLLrQ 74 (80)
...|.|..|++||+.|-..|=||
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkk 30 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKK 30 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999997776443
No 10
>PF14122 YokU: YokU-like protein
Probab=32.95 E-value=31 Score=23.56 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=32.2
Q ss_pred CCccccCCccccccccCCCCCCCcccccCCCchHHHHHHHH
Q psy15892 22 GGVYIDSDTGLESMSSAETPSKPCGLCMDGNASDLYRQEVT 62 (80)
Q Consensus 22 ~~~~~DSDTGlESMSSae~~~~~Cs~C~d~~~~e~L~~eV~ 62 (80)
..+|++...|.-+.-=.++|+-.|+.|----+.+....||+
T Consensus 15 ~tvyWeLpdGtraIeI~~tP~i~C~~CgmvYq~d~vi~EIE 55 (87)
T PF14122_consen 15 STVYWELPDGTRAIEITDTPAIICSNCGMVYQDDEVIKEIE 55 (87)
T ss_pred ceEEEEcCCCceEEEecCCceeeecCCCcEEehhHHHHHHh
Confidence 57899999999988889999988888875445566666664
No 11
>PHA03162 hypothetical protein; Provisional
Probab=31.48 E-value=53 Score=23.99 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=18.8
Q ss_pred CchHHHHHHHHHhhchhHHHhhh
Q psy15892 52 NASDLYRQEVTQLKCDKLDLLRQ 74 (80)
Q Consensus 52 ~~~e~L~~eV~rLk~dKldLLrQ 74 (80)
...|.|..|++||+.|-..|=||
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkk 35 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKK 35 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999998777443
No 12
>KOG2492|consensus
Probab=31.42 E-value=18 Score=31.40 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=26.3
Q ss_pred CCcccccCCC--------chHHHHHHHHHhhch---hHHHhhhhcc
Q psy15892 43 KPCGLCMDGN--------ASDLYRQEVTQLKCD---KLDLLRQNVV 77 (80)
Q Consensus 43 ~~Cs~C~d~~--------~~e~L~~eV~rLk~d---KldLLrQNVs 77 (80)
+-|++|+-|+ -.+.+..||.+|.-. -.-||-|||-
T Consensus 232 NMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVN 277 (552)
T KOG2492|consen 232 NMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVN 277 (552)
T ss_pred cccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeeccccc
Confidence 5899999643 259999999998732 2458999984
No 13
>KOG3863|consensus
Probab=29.81 E-value=39 Score=29.59 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=17.8
Q ss_pred hHHHHHHHHHhhchhHHHhhh
Q psy15892 54 SDLYRQEVTQLKCDKLDLLRQ 74 (80)
Q Consensus 54 ~e~L~~eV~rLk~dKldLLrQ 74 (80)
.-+|..||.+|+++|-.|||.
T Consensus 513 I~nLE~ev~~l~~eKeqLl~E 533 (604)
T KOG3863|consen 513 ILNLEDEVEKLQKEKEQLLRE 533 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 378889999999999888874
No 14
>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []. These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.
Probab=29.77 E-value=32 Score=18.94 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=10.3
Q ss_pred CCCccccCCccc
Q psy15892 21 AGGVYIDSDTGL 32 (80)
Q Consensus 21 ~~~~~~DSDTGl 32 (80)
.+|.|.|+-||+
T Consensus 8 lpA~Y~DP~T~l 19 (30)
T PF08265_consen 8 LPARYRDPKTGL 19 (30)
T ss_pred CCccccCCCCCC
Confidence 468999999997
No 15
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=29.47 E-value=54 Score=23.43 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=10.5
Q ss_pred hHHHHHHHHHhhch
Q psy15892 54 SDLYRQEVTQLKCD 67 (80)
Q Consensus 54 ~e~L~~eV~rLk~d 67 (80)
.+.|..||.+++-+
T Consensus 64 ~~el~~eiekvkke 77 (182)
T PF08432_consen 64 KKELEEEIEKVKKE 77 (182)
T ss_pred HHHHHHHHHHHHHH
Confidence 37888888888654
No 16
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=28.62 E-value=30 Score=26.01 Aligned_cols=38 Identities=26% Similarity=0.519 Sum_probs=27.1
Q ss_pred CCccccCCccccccccCCCCCCCcccccCC--------------------CchHHHHH-HHHHhhchh
Q psy15892 22 GGVYIDSDTGLESMSSAETPSKPCGLCMDG--------------------NASDLYRQ-EVTQLKCDK 68 (80)
Q Consensus 22 ~~~~~DSDTGlESMSSae~~~~~Cs~C~d~--------------------~~~e~L~~-eV~rLk~dK 68 (80)
|+.++|.++|. ...|.||++. ...+.++. +|.+++-++
T Consensus 115 ga~~~~~~~~~---------~~KCt~C~~ri~~g~~PaCV~~CP~~A~~fG~~~d~~~~~v~~~~~~~ 173 (203)
T COG0437 115 GAPQFNPDKGV---------VDKCTFCVDRVAVGKLPACVEACPTGALIFGDIDDPKSKRVAELKPEG 173 (203)
T ss_pred CCceeCcccCc---------ccccCcchhhHhcCCCCcccccCCcccccccchhhcchhhhhhhcccC
Confidence 67888888886 3689999752 13577777 787777655
No 17
>PF13062 DUF3924: Protein of unknown function (DUF3924)
Probab=27.80 E-value=13 Score=24.05 Aligned_cols=16 Identities=44% Similarity=0.677 Sum_probs=11.1
Q ss_pred HHHHhhchhHHHhhhh
Q psy15892 60 EVTQLKCDKLDLLRQN 75 (80)
Q Consensus 60 eV~rLk~dKldLLrQN 75 (80)
|+-+=-.||++||+|-
T Consensus 7 elpke~aekl~llkqa 22 (62)
T PF13062_consen 7 ELPKETAEKLDLLKQA 22 (62)
T ss_pred eccHHHHHHHHHHHHH
Confidence 3334446899999985
No 18
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=27.72 E-value=46 Score=29.13 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=16.7
Q ss_pred CcccccCCC-------chHHHHHHHHHh
Q psy15892 44 PCGLCMDGN-------ASDLYRQEVTQL 64 (80)
Q Consensus 44 ~Cs~C~d~~-------~~e~L~~eV~rL 64 (80)
.||||+++. ..|....||.-|
T Consensus 200 gCSFCtEp~~g~~~~R~~e~Vv~EVkaL 227 (560)
T COG1031 200 GCSFCTEPVRGRPEFRPPEDVVEEVKAL 227 (560)
T ss_pred CCccccCcCcCCcccCCHHHHHHHHHHH
Confidence 699999864 358888888766
No 19
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=25.44 E-value=71 Score=22.63 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=18.0
Q ss_pred chHHHHHHHHHhhchhHHHhhh
Q psy15892 53 ASDLYRQEVTQLKCDKLDLLRQ 74 (80)
Q Consensus 53 ~~e~L~~eV~rLk~dKldLLrQ 74 (80)
..|.|..|++||+.|-..|=||
T Consensus 4 t~EeLaaeL~kLqmENk~LKkk 25 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKK 25 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999998776544
No 20
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=25.13 E-value=52 Score=23.63 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=15.7
Q ss_pred HHHHHHhhchhHHHhhhh
Q psy15892 58 RQEVTQLKCDKLDLLRQN 75 (80)
Q Consensus 58 ~~eV~rLk~dKldLLrQN 75 (80)
-.||.+|+..+|+||++-
T Consensus 93 E~eI~~lQe~RLell~~~ 110 (154)
T PF14738_consen 93 EEEIQELQERRLELLKKM 110 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 368999999999999874
No 21
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=25.10 E-value=82 Score=20.01 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhchhH
Q psy15892 55 DLYRQEVTQLKCDKL 69 (80)
Q Consensus 55 e~L~~eV~rLk~dKl 69 (80)
..|+.||.+||-++-
T Consensus 21 ~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 21 ALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777777633
No 22
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=24.01 E-value=59 Score=24.55 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhchhHHHhhhh
Q psy15892 55 DLYRQEVTQLKCDKLDLLRQN 75 (80)
Q Consensus 55 e~L~~eV~rLk~dKldLLrQN 75 (80)
+.||.|| +.|++||-+|
T Consensus 151 ~KLR~DV----~~Kl~lLeen 167 (201)
T cd07660 151 EKLRNDV----SVKLKFLEEN 167 (201)
T ss_pred HHHHHHH----HHHHHHHhhh
Confidence 6666666 3678888776
No 23
>PRK06921 hypothetical protein; Provisional
Probab=23.56 E-value=68 Score=23.88 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhchhHHHhhhhc
Q psy15892 55 DLYRQEVTQLKCDKLDLLRQNV 76 (80)
Q Consensus 55 e~L~~eV~rLk~dKldLLrQNV 76 (80)
-.|+.++.+|+.+|..||.+|-
T Consensus 4 ~~~~~~~~~l~~~~~~~l~~~g 25 (266)
T PRK06921 4 RTIEEKAAELLMRERPSTTTKP 25 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3688999999999999999884
No 24
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.68 E-value=1e+02 Score=18.06 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhchhHHHhhhh
Q psy15892 55 DLYRQEVTQLKCDKLDLLRQN 75 (80)
Q Consensus 55 e~L~~eV~rLk~dKldLLrQN 75 (80)
+.|+.++..|+.+-..|..+|
T Consensus 43 ~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 43 EELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 444455555555444444443
No 25
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=22.57 E-value=53 Score=17.49 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=11.8
Q ss_pred HHHHHhhchhHHHhhh
Q psy15892 59 QEVTQLKCDKLDLLRQ 74 (80)
Q Consensus 59 ~eV~rLk~dKldLLrQ 74 (80)
+||.|||..=.||=||
T Consensus 1 ~E~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 1 REMNRLRNRISDLERQ 16 (23)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 3778888777777766
No 26
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.48 E-value=1e+02 Score=18.05 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhchhHHHh
Q psy15892 55 DLYRQEVTQLKCDKLDLL 72 (80)
Q Consensus 55 e~L~~eV~rLk~dKldLL 72 (80)
+.|..|-.+|+.|+-.|.
T Consensus 15 d~Lk~~~~~L~~E~~~L~ 32 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLR 32 (45)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 27
>PF11388 DotA: Phagosome trafficking protein DotA; InterPro: IPR021528 DotA is essential for intracellular growth in Legionella []. DotA is thought to play an important role in regulating initial phagosome trafficking decisions either upon or immediately after macrophage uptake [].
Probab=22.19 E-value=38 Score=23.92 Aligned_cols=9 Identities=67% Similarity=0.996 Sum_probs=7.7
Q ss_pred ccCCccccc
Q psy15892 26 IDSDTGLES 34 (80)
Q Consensus 26 ~DSDTGlES 34 (80)
+||+||||-
T Consensus 1 fds~tgle~ 9 (105)
T PF11388_consen 1 FDSNTGLEK 9 (105)
T ss_pred CCccccccc
Confidence 599999985
No 28
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=22.14 E-value=40 Score=20.26 Aligned_cols=8 Identities=63% Similarity=0.970 Sum_probs=3.9
Q ss_pred cccCCccc
Q psy15892 25 YIDSDTGL 32 (80)
Q Consensus 25 ~~DSDTGl 32 (80)
|+|..|||
T Consensus 2 ~~D~~TgL 9 (161)
T PF00990_consen 2 FIDPLTGL 9 (161)
T ss_dssp CB-TTTSS
T ss_pred cccCCCCC
Confidence 45666665
No 29
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=21.92 E-value=71 Score=24.07 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=13.9
Q ss_pred hHHHHHHHHHhhchhHHHhhhh
Q psy15892 54 SDLYRQEVTQLKCDKLDLLRQN 75 (80)
Q Consensus 54 ~e~L~~eV~rLk~dKldLLrQN 75 (80)
-+.||.|| +.|+|||-+|
T Consensus 153 f~kLr~Dv----~~Kl~lL~~~ 170 (203)
T cd00011 153 FEKLRGDV----AIKLKFLEEN 170 (203)
T ss_pred HHHHHHHH----HHHHHHHHHh
Confidence 47777777 4699999887
No 30
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=21.71 E-value=39 Score=19.40 Aligned_cols=6 Identities=67% Similarity=1.896 Sum_probs=5.5
Q ss_pred CCcccc
Q psy15892 43 KPCGLC 48 (80)
Q Consensus 43 ~~Cs~C 48 (80)
+||.||
T Consensus 4 kPCPFC 9 (61)
T PF14354_consen 4 KPCPFC 9 (61)
T ss_pred cCCCCC
Confidence 799999
No 31
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=20.59 E-value=95 Score=22.70 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=11.8
Q ss_pred hHHHHHHHHHhhchhH
Q psy15892 54 SDLYRQEVTQLKCDKL 69 (80)
Q Consensus 54 ~e~L~~eV~rLk~dKl 69 (80)
.+.|++|+.+|+.+..
T Consensus 78 n~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 78 NEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677777777777766
No 32
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.56 E-value=75 Score=26.34 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=18.0
Q ss_pred CCcccccCCC--------chHHHHHHHHHhh
Q psy15892 43 KPCGLCMDGN--------ASDLYRQEVTQLK 65 (80)
Q Consensus 43 ~~Cs~C~d~~--------~~e~L~~eV~rLk 65 (80)
+.|+||+-|. ..+....||.+|-
T Consensus 156 ~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv 186 (437)
T COG0621 156 KFCTFCIIPYARGKERSRPPEDILKEVKRLV 186 (437)
T ss_pred CCCCeeeeeccCCCccCCCHHHHHHHHHHHH
Confidence 7999999643 3688888998874
No 33
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=20.30 E-value=74 Score=18.23 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=9.0
Q ss_pred HHHHHhhchhHHH
Q psy15892 59 QEVTQLKCDKLDL 71 (80)
Q Consensus 59 ~eV~rLk~dKldL 71 (80)
.++.+||-+|+-|
T Consensus 27 ~~l~~LKk~kL~L 39 (49)
T PF04325_consen 27 EELERLKKEKLRL 39 (49)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4677788777754
No 34
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=20.24 E-value=85 Score=24.93 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=18.2
Q ss_pred CCcccccCCC--------chHHHHHHHHHhhc
Q psy15892 43 KPCGLCMDGN--------ASDLYRQEVTQLKC 66 (80)
Q Consensus 43 ~~Cs~C~d~~--------~~e~L~~eV~rLk~ 66 (80)
..|+||.-+. ..+.+..||.+|+.
T Consensus 151 ~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~ 182 (440)
T PRK14862 151 HRCTFCIIPSMRGDLVSRPIGDVLREAERLVK 182 (440)
T ss_pred CCCccCCcccccCCccccCHHHHHHHHHHHHH
Confidence 5799998542 36888899998753
No 35
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.03 E-value=91 Score=25.04 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=18.4
Q ss_pred CCcccccCCC--------chHHHHHHHHHhhc
Q psy15892 43 KPCGLCMDGN--------ASDLYRQEVTQLKC 66 (80)
Q Consensus 43 ~~Cs~C~d~~--------~~e~L~~eV~rLk~ 66 (80)
..|+||.-+. ..|.+..||.+|..
T Consensus 166 ~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~ 197 (449)
T PRK14332 166 NFCTFCVVPYTRGRERSRDPKSIVREIQDLQE 197 (449)
T ss_pred CCCCCCCcccccCCcccCCHHHHHHHHHHHHH
Confidence 5899998642 36889999988853
Done!