Query psy15892
Match_columns 80
No_of_seqs 19 out of 21
Neff 2.4
Searched_HMMs 29240
Date Sat Aug 17 00:18:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1use_A VAsp, vasodilator-stimu 73.5 2.5 8.7E-05 24.9 2.5 23 54-76 17-39 (45)
2 3s9g_A Protein hexim1; cyclin 71.7 2 6.9E-05 29.2 2.0 26 53-78 66-91 (104)
3 2l5g_A GPS2 protein, G protein 68.1 3.8 0.00013 23.6 2.4 22 53-74 16-37 (38)
4 3rmi_A Chorismate mutase prote 49.0 2.4 8.3E-05 27.5 -0.8 34 31-74 1-34 (114)
5 2yy0_A C-MYC-binding protein; 48.8 13 0.00043 21.7 2.4 25 51-75 18-42 (53)
6 3m48_A General control protein 44.8 11 0.00037 21.0 1.5 11 55-65 17-27 (33)
7 3vmx_A Voltage-gated hydrogen 41.7 16 0.00053 21.7 2.0 17 55-75 28-44 (48)
8 2bni_A General control protein 40.8 13 0.00046 20.8 1.5 11 55-65 18-28 (34)
9 3c3g_A Alpha/beta peptide with 38.8 15 0.00052 20.5 1.5 12 55-66 17-28 (33)
10 3c3f_A Alpha/beta peptide with 38.7 15 0.00052 20.6 1.5 11 55-65 18-28 (34)
11 2oxj_A Hybrid alpha/beta pepti 38.5 15 0.00053 20.5 1.5 11 55-65 18-28 (34)
12 1hlo_A Protein (transcription 37.3 20 0.00067 21.4 2.0 22 54-75 59-80 (80)
13 4iao_C Regulatory protein SIR4 36.9 7.2 0.00025 28.1 0.0 17 26-42 28-44 (159)
14 1uo4_A General control protein 35.6 17 0.00058 20.4 1.4 11 55-65 18-28 (34)
15 2oa5_A Hypothetical protein BQ 32.7 32 0.0011 23.3 2.7 24 51-74 7-30 (110)
16 1kd8_B GABH BLL, GCN4 acid bas 32.1 21 0.00071 20.2 1.4 12 55-66 18-29 (36)
17 2doh_C Fragment, plasminogen-b 29.7 23 0.00079 19.4 1.3 12 59-70 8-19 (30)
18 1kd8_A GABH AIV, GCN4 acid bas 28.8 25 0.00087 19.8 1.4 12 55-66 18-29 (36)
19 2hy6_A General control protein 26.9 29 0.00099 19.4 1.4 12 55-66 18-29 (34)
20 1i4d_A Arfaptin 2, partner of 24.6 38 0.0013 24.6 2.0 18 54-75 155-172 (224)
21 3hnw_A Uncharacterized protein 24.5 48 0.0016 22.2 2.4 23 54-76 105-127 (138)
22 3he5_B Synzip2; heterodimeric 24.3 46 0.0016 19.9 2.0 20 54-73 5-24 (52)
23 1dh3_A Transcription factor CR 23.4 65 0.0022 18.4 2.5 22 54-75 24-45 (55)
24 2wq1_A General control protein 23.2 38 0.0013 18.8 1.4 11 55-65 17-27 (33)
No 1
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=73.47 E-value=2.5 Score=24.92 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhhchhHHHhhhhc
Q psy15892 54 SDLYRQEVTQLKCDKLDLLRQNV 76 (80)
Q Consensus 54 ~e~L~~eV~rLk~dKldLLrQNV 76 (80)
++.+|.|+.++|.|=.|-+||-+
T Consensus 17 L~E~RkElqK~K~EIIeAi~~El 39 (45)
T 1use_A 17 LEEVKKELQKVKEEIIEAFVQEL 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999888743
No 2
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=71.67 E-value=2 Score=29.19 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.8
Q ss_pred chHHHHHHHHHhhchhHHHhhhhccc
Q psy15892 53 ASDLYRQEVTQLKCDKLDLLRQNVVS 78 (80)
Q Consensus 53 ~~e~L~~eV~rLk~dKldLLrQNVsc 78 (80)
++..|..||.||+.+-..|+++|-.|
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56899999999999999999999766
No 3
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=68.07 E-value=3.8 Score=23.55 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=18.1
Q ss_pred chHHHHHHHHHhhchhHHHhhh
Q psy15892 53 ASDLYRQEVTQLKCDKLDLLRQ 74 (80)
Q Consensus 53 ~~e~L~~eV~rLk~dKldLLrQ 74 (80)
+...|...+..||.||+.|.-|
T Consensus 16 Qi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 16 QILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4567888899999999998755
No 4
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=49.04 E-value=2.4 Score=27.48 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=23.0
Q ss_pred cccccccCCCCCCCcccccCCCchHHHHHHHHHhhchhHHHhhh
Q psy15892 31 GLESMSSAETPSKPCGLCMDGNASDLYRQEVTQLKCDKLDLLRQ 74 (80)
Q Consensus 31 GlESMSSae~~~~~Cs~C~d~~~~e~L~~eV~rLk~dKldLLrQ 74 (80)
|..||.|+++ ...++.||.+|.++-.+=++||.+
T Consensus 1 ~~~~~~~p~~----------~~~L~~lR~~ID~ID~~il~LL~~ 34 (114)
T 3rmi_A 1 GPGSMMQEKI----------LSELAYLRQSIDNFDITLIHILAE 34 (114)
T ss_dssp --CHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcc----------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666654 235788999998888877777754
No 5
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.83 E-value=13 Score=21.67 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=19.2
Q ss_pred CCchHHHHHHHHHhhchhHHHhhhh
Q psy15892 51 GNASDLYRQEVTQLKCDKLDLLRQN 75 (80)
Q Consensus 51 ~~~~e~L~~eV~rLk~dKldLLrQN 75 (80)
+...|.|++|+..||..--.|.+||
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999988777776665
No 6
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=44.76 E-value=11 Score=21.04 Aligned_cols=11 Identities=36% Similarity=0.281 Sum_probs=8.9
Q ss_pred HHHHHHHHHhh
Q psy15892 55 DLYRQEVTQLK 65 (80)
Q Consensus 55 e~L~~eV~rLk 65 (80)
..|.+||.|||
T Consensus 17 ~~Le~EV~RLk 27 (33)
T 3m48_A 17 WNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56888888887
No 7
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=41.74 E-value=16 Score=21.71 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhchhHHHhhhh
Q psy15892 55 DLYRQEVTQLKCDKLDLLRQN 75 (80)
Q Consensus 55 e~L~~eV~rLk~dKldLLrQN 75 (80)
..+.|||.||+ .|||||
T Consensus 28 ~~~eQEieRL~----~LLkqH 44 (48)
T 3vmx_A 28 SEKEQEIERLN----KLLKQN 44 (48)
T ss_dssp HHHHHHHHHHH----HHHHHT
T ss_pred cHHHHHHHHHH----HHHHHc
Confidence 45668888887 488887
No 8
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=40.82 E-value=13 Score=20.77 Aligned_cols=11 Identities=18% Similarity=0.298 Sum_probs=9.6
Q ss_pred HHHHHHHHHhh
Q psy15892 55 DLYRQEVTQLK 65 (80)
Q Consensus 55 e~L~~eV~rLk 65 (80)
..|+.||.|||
T Consensus 18 ~~L~~EV~RLk 28 (34)
T 2bni_A 18 HHICNELARIK 28 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57899999997
No 9
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=38.83 E-value=15 Score=20.45 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhc
Q psy15892 55 DLYRQEVTQLKC 66 (80)
Q Consensus 55 e~L~~eV~rLk~ 66 (80)
..|..||.|||.
T Consensus 17 ~~Le~EV~RLk~ 28 (33)
T 3c3g_A 17 YHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 578899999973
No 10
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=38.74 E-value=15 Score=20.58 Aligned_cols=11 Identities=9% Similarity=0.139 Sum_probs=9.5
Q ss_pred HHHHHHHHHhh
Q psy15892 55 DLYRQEVTQLK 65 (80)
Q Consensus 55 e~L~~eV~rLk 65 (80)
..|..||.|||
T Consensus 18 ~~Le~EV~RLk 28 (34)
T 3c3f_A 18 YHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 67889999997
No 11
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=38.50 E-value=15 Score=20.54 Aligned_cols=11 Identities=36% Similarity=0.338 Sum_probs=9.7
Q ss_pred HHHHHHHHHhh
Q psy15892 55 DLYRQEVTQLK 65 (80)
Q Consensus 55 e~L~~eV~rLk 65 (80)
+.|..||.|||
T Consensus 18 ~~Le~eV~rLk 28 (34)
T 2oxj_A 18 XHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 67899999997
No 12
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=37.33 E-value=20 Score=21.42 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhhchhHHHhhhh
Q psy15892 54 SDLYRQEVTQLKCDKLDLLRQN 75 (80)
Q Consensus 54 ~e~L~~eV~rLk~dKldLLrQN 75 (80)
...|.+++.+|+.++-.|=+||
T Consensus 59 I~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4788999999999998888887
No 13
>4iao_C Regulatory protein SIR4; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=36.90 E-value=7.2 Score=28.11 Aligned_cols=17 Identities=53% Similarity=0.483 Sum_probs=0.0
Q ss_pred ccCCccccccccCCCCC
Q psy15892 26 IDSDTGLESMSSAETPS 42 (80)
Q Consensus 26 ~DSDTGlESMSSae~~~ 42 (80)
-||-|.|||+||.|...
T Consensus 28 ~~~~~~~~~~~~~~~~~ 44 (159)
T 4iao_C 28 NDSLTDLESLSSGESNE 44 (159)
T ss_dssp -----------------
T ss_pred ccchhhhhhhccCCCCc
Confidence 47889999999998653
No 14
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=35.60 E-value=17 Score=20.36 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=9.5
Q ss_pred HHHHHHHHHhh
Q psy15892 55 DLYRQEVTQLK 65 (80)
Q Consensus 55 e~L~~eV~rLk 65 (80)
..|.+||.|||
T Consensus 18 ~~Le~EV~RLk 28 (34)
T 1uo4_A 18 YHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57889999997
No 15
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=32.70 E-value=32 Score=23.26 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=19.6
Q ss_pred CCchHHHHHHHHHhhchhHHHhhh
Q psy15892 51 GNASDLYRQEVTQLKCDKLDLLRQ 74 (80)
Q Consensus 51 ~~~~e~L~~eV~rLk~dKldLLrQ 74 (80)
+...|.|..|++||+.|-..|=||
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkk 30 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQK 30 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999998877554
No 16
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=32.07 E-value=21 Score=20.22 Aligned_cols=12 Identities=25% Similarity=0.208 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhc
Q psy15892 55 DLYRQEVTQLKC 66 (80)
Q Consensus 55 e~L~~eV~rLk~ 66 (80)
..|.+||.|||.
T Consensus 18 ~~Le~eV~RLk~ 29 (36)
T 1kd8_B 18 WHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 567888999873
No 17
>2doh_C Fragment, plasminogen-binding group A streptococcal M-like PAM; lysine-binding site, kringle domains, hydrolase; HET: DIO; 2.30A {Homo sapiens} PDB: 2kj4_B 1i5k_C 2doi_C
Probab=29.73 E-value=23 Score=19.37 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=9.6
Q ss_pred HHHHHhhchhHH
Q psy15892 59 QEVTQLKCDKLD 70 (80)
Q Consensus 59 ~eV~rLk~dKld 70 (80)
.|+.|||+++.+
T Consensus 8 ~eL~rLknERh~ 19 (30)
T 2doh_C 8 AELQRLKNERHE 19 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578899998865
No 18
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=28.80 E-value=25 Score=19.85 Aligned_cols=12 Identities=25% Similarity=0.155 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhc
Q psy15892 55 DLYRQEVTQLKC 66 (80)
Q Consensus 55 e~L~~eV~rLk~ 66 (80)
..|.+||.|||.
T Consensus 18 ~~Le~EV~RL~~ 29 (36)
T 1kd8_A 18 WHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467788888874
No 19
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=26.91 E-value=29 Score=19.40 Aligned_cols=12 Identities=17% Similarity=0.050 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhc
Q psy15892 55 DLYRQEVTQLKC 66 (80)
Q Consensus 55 e~L~~eV~rLk~ 66 (80)
..|.+||.|||.
T Consensus 18 ~~Le~eV~RL~~ 29 (34)
T 2hy6_A 18 YHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 568889999973
No 20
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=24.58 E-value=38 Score=24.65 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhhchhHHHhhhh
Q psy15892 54 SDLYRQEVTQLKCDKLDLLRQN 75 (80)
Q Consensus 54 ~e~L~~eV~rLk~dKldLLrQN 75 (80)
-+.||.|| +.|+|||-+|
T Consensus 155 f~kLR~DV----~~KleLLd~~ 172 (224)
T 1i4d_A 155 YEKLRGDV----AIKLKFLEEN 172 (224)
T ss_dssp HHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHhhh
Confidence 47888888 6899999766
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.54 E-value=48 Score=22.17 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhhchhHHHhhhhc
Q psy15892 54 SDLYRQEVTQLKCDKLDLLRQNV 76 (80)
Q Consensus 54 ~e~L~~eV~rLk~dKldLLrQNV 76 (80)
.+.+.+++.+|+-+..+|-+|++
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777888888888888877765
No 22
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.33 E-value=46 Score=19.93 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhhchhHHHhh
Q psy15892 54 SDLYRQEVTQLKCDKLDLLR 73 (80)
Q Consensus 54 ~e~L~~eV~rLk~dKldLLr 73 (80)
..-||.-|.|||.|.+.|-|
T Consensus 5 naylrkkiarlkkdnlqler 24 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLER 24 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhh
Confidence 46789999999999988876
No 23
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=23.37 E-value=65 Score=18.43 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhhchhHHHhhhh
Q psy15892 54 SDLYRQEVTQLKCDKLDLLRQN 75 (80)
Q Consensus 54 ~e~L~~eV~rLk~dKldLLrQN 75 (80)
.+.|...|..|..+-..|.+|+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888877765
No 24
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=23.15 E-value=38 Score=18.81 Aligned_cols=11 Identities=9% Similarity=0.012 Sum_probs=8.6
Q ss_pred HHHHHHHHHhh
Q psy15892 55 DLYRQEVTQLK 65 (80)
Q Consensus 55 e~L~~eV~rLk 65 (80)
..|.+||.|||
T Consensus 17 ~~le~EV~Rl~ 27 (33)
T 2wq1_A 17 YHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46778888887
Done!