RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15892
         (80 letters)



>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118,
           structural genomics, PSI-2, protein structure
           initiative; 1.96A {Lactobacillus plantarum}
          Length = 347

 Score = 24.3 bits (53), Expect = 5.7
 Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 17  EGEGAGGVY---IDSDTGLESMSSAETPSKPCGLCMDGNASDLY 57
           + +  GG+    ID  T  +  +     + P  + +D     +Y
Sbjct: 58  KEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVY 101


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.308    0.127    0.352 

Gapped
Lambda     K      H
   0.267   0.0678    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,038,263
Number of extensions: 43571
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 2
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.5 bits)