RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15893
         (80 letters)



>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing
          enzyme {Neurospora crassa [TaxId: 5141]}
          Length = 365

 Score = 28.3 bits (62), Expect = 0.073
 Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 1/40 (2%)

Query: 19 EGAGGVY-IDSDTGLESMSSAETPSKPCGLCMDGNASDLY 57
                + + S T +   +S      P     D N   ++
Sbjct: 59 MKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIF 98


>d1t0aa_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate
          synthase IspF {Shewanella oneidensis [TaxId: 70863]}
          Length = 158

 Score = 27.9 bits (62), Expect = 0.097
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 22 GGVYIDSDTGLESMSSAETPSKPCGLCMDG 51
           GV +  +TGL + S  +         + G
Sbjct: 22 CGVEVPYETGLVAHSDGDVVLHAISDAILG 51


>d1w55a2 d.79.5.1 (A:208-370) IspD/ispF bifunctional enzyme, MECDP
          synthase domain {Campylobacter jejuni [TaxId: 197]}
          Length = 163

 Score = 27.1 bits (60), Expect = 0.20
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 22 GGVYIDSDTGLESMSSAETPSKPCGLCMDG 51
           GV I    GL++ S  +  +      + G
Sbjct: 23 AGVQIHPTMGLKAHSDGDVLAHSLTDAILG 52


>d1gx1a_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate
          synthase IspF {Escherichia coli [TaxId: 562]}
          Length = 157

 Score = 26.3 bits (58), Expect = 0.31
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 22 GGVYIDSDTGLESMSSAETP 41
          GGV I  + GL + S  +  
Sbjct: 22 GGVRIPYEKGLLAHSDGDVA 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.127    0.352 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 242,665
Number of extensions: 7787
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 4
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.1 bits)