Query psy15895
Match_columns 124
No_of_seqs 126 out of 1276
Neff 6.3
Searched_HMMs 46136
Date Sat Aug 17 00:21:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0326 HtpG Molecular chapero 99.9 8.8E-25 1.9E-29 188.2 8.6 99 23-124 4-102 (623)
2 PTZ00272 heat shock protein 83 99.9 5.4E-22 1.2E-26 174.0 9.7 98 24-124 3-100 (701)
3 PTZ00130 heat shock protein 90 99.9 6.2E-22 1.3E-26 175.1 7.8 98 24-124 66-163 (814)
4 KOG0019|consensus 99.8 3.9E-21 8.5E-26 164.6 8.0 98 22-124 33-130 (656)
5 PRK05218 heat shock protein 90 99.8 4E-20 8.7E-25 160.4 9.9 99 23-124 3-101 (613)
6 KOG0020|consensus 99.8 2E-20 4.4E-25 158.3 6.0 101 21-124 70-170 (785)
7 PRK14083 HSP90 family protein; 99.7 8.9E-18 1.9E-22 145.6 9.0 90 25-124 2-91 (601)
8 PF13589 HATPase_c_3: Histidin 98.9 2.7E-09 5.8E-14 76.4 6.3 55 48-122 4-59 (137)
9 COG4191 Signal transduction hi 98.8 1.6E-08 3.6E-13 87.5 6.7 85 21-122 451-557 (603)
10 PF02518 HATPase_c: Histidine 98.7 5.3E-08 1.2E-12 65.8 6.1 51 50-117 9-59 (111)
11 COG1389 DNA topoisomerase VI, 98.7 2.9E-08 6.3E-13 84.2 5.3 59 50-122 40-99 (538)
12 TIGR02938 nifL_nitrog nitrogen 98.4 8.1E-07 1.7E-11 71.8 7.3 56 51-120 392-447 (494)
13 PRK11006 phoR phosphate regulo 98.4 1E-06 2.2E-11 72.3 7.5 53 49-120 321-373 (430)
14 COG2205 KdpD Osmosensitive K+ 98.4 3.4E-07 7.3E-12 82.0 4.7 56 47-120 777-832 (890)
15 PRK10755 sensor protein BasS/P 98.4 1.2E-06 2.5E-11 69.8 7.2 48 51-115 252-299 (356)
16 TIGR01386 cztS_silS_copS heavy 98.4 1.9E-06 4.2E-11 69.7 8.5 50 51-117 358-407 (457)
17 COG5002 VicK Signal transducti 98.4 5.7E-07 1.2E-11 74.7 5.2 53 48-118 345-397 (459)
18 COG0642 BaeS Signal transducti 98.4 1.4E-06 3.1E-11 65.5 6.8 54 51-123 233-286 (336)
19 PRK09303 adaptive-response sen 98.3 1.6E-06 3.5E-11 70.7 7.5 54 48-120 275-329 (380)
20 TIGR02916 PEP_his_kin putative 98.3 1.7E-06 3.7E-11 75.5 7.8 56 51-123 584-639 (679)
21 PRK10549 signal transduction h 98.3 1.9E-06 4.2E-11 70.4 7.6 49 51-116 357-405 (466)
22 COG3290 CitA Signal transducti 98.3 1.4E-06 3.1E-11 75.0 6.8 59 50-123 431-489 (537)
23 PRK10364 sensor protein ZraS; 98.3 2.3E-06 4.9E-11 70.6 7.5 53 51-121 353-405 (457)
24 PRK11086 sensory histidine kin 98.3 2.3E-06 5E-11 70.9 7.5 56 51-122 438-493 (542)
25 PRK15347 two component system 98.2 3.1E-06 6.7E-11 74.9 7.2 50 51-119 518-567 (921)
26 PRK10490 sensor protein KdpD; 98.2 5.9E-06 1.3E-10 74.8 7.7 55 48-121 781-835 (895)
27 PRK04184 DNA topoisomerase VI 98.2 5.6E-06 1.2E-10 71.7 7.1 55 51-119 41-98 (535)
28 PRK10604 sensor protein RstB; 98.1 8.4E-06 1.8E-10 67.3 7.6 49 51-119 324-372 (433)
29 PRK14868 DNA topoisomerase VI 98.1 6.7E-06 1.4E-10 73.6 7.3 57 50-120 50-106 (795)
30 PRK13837 two-component VirA-li 98.1 7.3E-06 1.6E-10 73.1 7.6 54 49-121 564-632 (828)
31 PRK11100 sensory histidine kin 98.1 7.2E-06 1.6E-10 66.5 7.0 51 51-119 373-423 (475)
32 TIGR00585 mutl DNA mismatch re 98.1 5.7E-06 1.2E-10 66.5 5.8 57 45-122 21-77 (312)
33 TIGR02956 TMAO_torS TMAO reduc 98.1 7.2E-06 1.6E-10 73.1 6.9 51 49-119 583-634 (968)
34 TIGR03785 marine_sort_HK prote 98.1 9.9E-06 2.2E-10 71.6 7.5 52 51-120 602-653 (703)
35 PRK11091 aerobic respiration c 98.1 8.3E-06 1.8E-10 71.7 6.6 50 48-116 401-451 (779)
36 PRK11466 hybrid sensory histid 98.1 1.1E-05 2.4E-10 71.6 7.4 50 51-119 566-615 (914)
37 PRK11360 sensory histidine kin 98.1 1.6E-05 3.4E-10 65.6 7.5 52 51-120 505-557 (607)
38 PRK15053 dpiB sensor histidine 98.1 1.6E-05 3.5E-10 66.6 7.7 59 49-122 436-494 (545)
39 PRK10618 phosphotransfer inter 98.1 1.3E-05 2.9E-10 72.8 7.6 53 48-120 568-623 (894)
40 PRK09467 envZ osmolarity senso 98.0 1.7E-05 3.7E-10 64.4 7.5 47 51-116 336-382 (435)
41 PRK09470 cpxA two-component se 98.0 1.7E-05 3.7E-10 64.5 7.4 47 51-116 358-404 (461)
42 TIGR01052 top6b DNA topoisomer 98.0 1.6E-05 3.4E-10 68.2 7.5 57 50-120 32-89 (488)
43 TIGR02966 phoR_proteo phosphat 98.0 2.1E-05 4.5E-10 60.4 6.9 51 51-119 234-284 (333)
44 PRK10841 hybrid sensory kinase 98.0 1.9E-05 4E-10 71.8 7.2 52 48-119 565-616 (924)
45 PRK09835 sensor kinase CusS; P 98.0 2.6E-05 5.6E-10 63.9 7.4 48 51-115 380-427 (482)
46 PRK13560 hypothetical protein; 98.0 1.4E-05 3.1E-10 68.9 6.2 48 51-112 716-764 (807)
47 COG0323 MutL DNA mismatch repa 98.0 7.8E-06 1.7E-10 72.0 4.1 48 47-115 24-72 (638)
48 COG3920 Signal transduction hi 97.9 2.4E-05 5.2E-10 60.5 6.1 49 49-111 125-175 (221)
49 PRK10815 sensor protein PhoQ; 97.9 4.2E-05 9.2E-10 64.6 7.3 49 51-119 383-431 (485)
50 PRK00095 mutL DNA mismatch rep 97.9 3.3E-05 7.1E-10 67.7 6.5 51 46-116 22-72 (617)
51 PRK11073 glnL nitrogen regulat 97.8 8.4E-05 1.8E-09 58.6 7.0 56 48-121 240-305 (348)
52 PRK13557 histidine kinase; Pro 97.8 9.6E-05 2.1E-09 60.9 7.5 53 49-120 281-348 (540)
53 PRK14867 DNA topoisomerase VI 97.8 7.8E-05 1.7E-09 66.0 7.2 56 50-119 40-96 (659)
54 smart00387 HATPase_c Histidine 97.7 0.00022 4.7E-09 45.7 7.2 50 51-117 10-59 (111)
55 PRK04069 serine-protein kinase 97.7 0.00018 3.9E-09 52.6 7.2 52 49-114 45-96 (161)
56 PRK11107 hybrid sensory histid 97.7 9.3E-05 2E-09 65.5 6.6 49 49-116 412-465 (919)
57 PRK10337 sensor protein QseC; 97.7 0.00015 3.2E-09 59.3 7.1 45 51-116 357-401 (449)
58 cd00075 HATPase_c Histidine ki 97.6 0.00039 8.4E-09 43.8 7.1 50 51-116 5-54 (103)
59 PRK10547 chemotaxis protein Ch 97.6 0.00017 3.8E-09 64.0 7.2 34 80-113 414-447 (670)
60 PRK11644 sensory histidine kin 97.6 0.00011 2.3E-09 62.5 5.1 44 51-112 415-458 (495)
61 COG2972 Predicted signal trans 97.6 0.00024 5.1E-09 59.8 7.1 58 45-115 349-406 (456)
62 COG5000 NtrY Signal transducti 97.6 0.00023 4.9E-09 62.7 6.8 64 47-122 602-665 (712)
63 PRK10600 nitrate/nitrite senso 97.5 0.00019 4.1E-09 61.2 5.8 43 51-111 474-516 (569)
64 COG3852 NtrB Signal transducti 97.5 0.00012 2.5E-09 60.1 4.0 67 42-123 234-314 (363)
65 PRK05559 DNA topoisomerase IV 97.5 8.7E-05 1.9E-09 65.4 3.3 47 50-114 41-87 (631)
66 PRK09959 hybrid sensory histid 97.4 0.0004 8.6E-09 63.8 7.2 52 49-120 832-888 (1197)
67 TIGR01924 rsbW_low_gc serine-p 97.4 0.00083 1.8E-08 49.2 7.1 52 49-114 45-96 (159)
68 TIGR01925 spIIAB anti-sigma F 97.3 0.0011 2.3E-08 46.4 6.8 47 49-109 42-88 (137)
69 COG4251 Bacteriophytochrome (l 97.3 0.00036 7.9E-09 61.7 4.8 52 48-116 639-690 (750)
70 COG0643 CheA Chemotaxis protei 97.3 0.00049 1.1E-08 61.6 5.6 54 51-113 438-494 (716)
71 PRK10935 nitrate/nitrite senso 97.2 0.00064 1.4E-08 57.1 5.5 43 52-112 477-520 (565)
72 PF13581 HATPase_c_2: Histidin 97.2 0.0026 5.6E-08 43.6 7.4 53 49-115 34-86 (125)
73 COG3850 NarQ Signal transducti 97.1 0.0011 2.3E-08 57.7 5.6 42 51-110 486-527 (574)
74 PRK03660 anti-sigma F factor; 97.1 0.0029 6.4E-08 44.5 6.9 46 50-109 43-88 (146)
75 PRK13559 hypothetical protein; 97.0 0.00088 1.9E-08 53.2 4.1 48 51-112 272-321 (361)
76 COG4585 Signal transduction hi 96.9 0.0014 3.1E-08 53.1 4.9 44 51-112 284-327 (365)
77 COG4192 Signal transduction hi 96.9 0.0027 5.9E-08 54.9 6.4 85 20-122 519-624 (673)
78 smart00433 TOP2c Topoisomerase 96.8 0.00087 1.9E-08 58.7 2.9 44 51-112 6-49 (594)
79 PRK05644 gyrB DNA gyrase subun 96.6 0.0012 2.7E-08 58.3 2.5 43 50-110 41-83 (638)
80 TIGR01055 parE_Gneg DNA topois 96.4 0.003 6.6E-08 55.7 3.8 45 49-111 33-77 (625)
81 TIGR01059 gyrB DNA gyrase, B s 96.4 0.0026 5.5E-08 56.4 3.0 43 50-110 34-76 (654)
82 KOG0787|consensus 96.2 0.014 3.1E-07 49.0 6.3 63 51-123 265-327 (414)
83 COG2172 RsbW Anti-sigma regula 96.1 0.031 6.7E-07 40.8 6.8 48 49-109 43-90 (146)
84 PRK14939 gyrB DNA gyrase subun 95.7 0.0072 1.6E-07 54.6 2.7 43 50-110 41-83 (756)
85 COG3275 LytS Putative regulato 95.2 0.081 1.8E-06 45.9 7.2 74 23-109 414-506 (557)
86 COG3851 UhpB Signal transducti 94.6 0.062 1.3E-06 45.5 4.9 29 82-110 428-456 (497)
87 TIGR01058 parE_Gpos DNA topois 94.4 0.051 1.1E-06 48.3 4.1 42 51-110 39-80 (637)
88 KOG1978|consensus 93.5 0.083 1.8E-06 47.1 3.6 50 43-112 17-66 (672)
89 KOG1977|consensus 93.4 0.083 1.8E-06 48.0 3.5 33 86-119 40-72 (1142)
90 PF14501 HATPase_c_5: GHKL dom 92.6 0.68 1.5E-05 30.7 6.4 41 51-105 10-50 (100)
91 PLN03128 DNA topoisomerase 2; 92.1 0.3 6.5E-06 46.2 5.5 45 51-111 57-101 (1135)
92 PLN03237 DNA topoisomerase 2; 91.8 0.29 6.3E-06 47.3 5.1 45 51-111 82-126 (1465)
93 PTZ00108 DNA topoisomerase 2-l 91.5 0.31 6.7E-06 46.9 5.0 48 51-111 62-109 (1388)
94 PHA02569 39 DNA topoisomerase 91.1 0.32 6.9E-06 43.0 4.4 46 51-112 50-95 (602)
95 COG4564 Signal transduction hi 90.4 0.87 1.9E-05 38.4 6.0 35 82-116 377-411 (459)
96 PTZ00109 DNA gyrase subunit b; 90.4 0.14 3E-06 47.2 1.5 28 82-112 150-177 (903)
97 KOG1979|consensus 89.9 0.55 1.2E-05 41.8 4.7 28 86-113 46-74 (694)
98 COG0187 GyrB Type IIA topoisom 89.6 0.34 7.3E-06 43.1 3.2 42 52-111 42-83 (635)
99 COG5381 Uncharacterized protei 81.9 3.9 8.5E-05 30.6 5.0 49 50-116 67-115 (184)
100 KOG0355|consensus 67.4 6.5 0.00014 36.2 3.5 27 86-112 76-102 (842)
101 PF04355 SmpA_OmlA: SmpA / Oml 65.3 3.4 7.4E-05 25.8 1.0 19 105-123 14-32 (71)
102 PF07492 Trehalase_Ca-bi: Neut 59.6 7.9 0.00017 21.1 1.6 14 93-106 11-24 (30)
103 KOG3938|consensus 53.6 13 0.00029 30.3 2.8 24 84-107 127-150 (334)
104 PRK11251 DNA-binding transcrip 51.1 11 0.00024 26.3 1.8 20 104-123 37-56 (109)
105 PF03646 FlaG: FlaG protein; 39.8 1.1E+02 0.0025 20.4 5.9 33 82-114 54-91 (107)
106 PRK11548 outer membrane biogen 38.2 24 0.00051 24.3 1.8 19 105-123 48-66 (113)
107 cd08683 C2_C2cd3 C2 domain fou 34.7 15 0.00032 27.0 0.3 10 3-12 59-68 (143)
108 COG2865 Predicted transcriptio 33.3 1.2E+02 0.0025 26.5 5.5 50 47-114 271-323 (467)
109 cd07461 CRD_FZ8 Cysteine-rich 28.5 54 0.0012 23.3 2.3 37 3-51 22-58 (125)
110 PF10090 DUF2328: Uncharacteri 26.7 1.2E+02 0.0026 22.7 4.0 30 78-107 100-129 (182)
111 PF08671 SinI: Anti-repressor 26.3 39 0.00085 18.3 1.0 12 105-116 15-26 (30)
112 PF10614 CsgF: Type VIII secre 25.4 1.2E+02 0.0027 22.1 3.8 24 83-106 107-130 (142)
113 PF04025 DUF370: Domain of unk 24.5 1.3E+02 0.0029 19.5 3.4 31 86-116 39-73 (73)
114 COG2913 OlmA Outer membrane li 22.7 55 0.0012 24.0 1.5 18 105-122 51-68 (147)
115 PF11399 DUF3192: Protein of u 20.7 67 0.0014 22.3 1.5 18 105-122 33-50 (102)
116 PRK10050 curli assembly protei 20.2 1.8E+02 0.0039 21.2 3.8 24 83-106 98-121 (138)
No 1
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.8e-25 Score=188.20 Aligned_cols=99 Identities=58% Similarity=0.842 Sum_probs=91.2
Q ss_pred cceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEE
Q psy15895 23 AEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQD 102 (124)
Q Consensus 23 ~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~D 102 (124)
.++..||+++.+++++|++.+|++++||+||||+||.|||.|+||..+..+... ...+.++|++..++++.+|+|+|
T Consensus 4 ~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~---~~~~~~~I~i~~Dk~~kTLtI~D 80 (623)
T COG0326 4 QETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELG---EGDSDLRIRISFDKDNKTLTISD 80 (623)
T ss_pred hhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCcccc---CCCCCceEEEEEcccCCEEEEEe
Confidence 467889999999999999999999999999999999999999999988766543 34568999999999999999999
Q ss_pred cCCCCCHHHHHhhccccccCCC
Q psy15895 103 SGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 103 nGiGM~~e~l~~~l~~i~~S~~ 124 (124)
|||||+++++.++|||||+||+
T Consensus 81 NGIGMT~~Ev~~~LgTIAkSgT 102 (623)
T COG0326 81 NGIGMTKDEVIENLGTIAKSGT 102 (623)
T ss_pred CCCCCCHHHHHHHHHHhhhccH
Confidence 9999999999999999999996
No 2
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.87 E-value=5.4e-22 Score=173.97 Aligned_cols=98 Identities=51% Similarity=0.831 Sum_probs=88.2
Q ss_pred ceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEc
Q psy15895 24 EKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDS 103 (124)
Q Consensus 24 e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~Dn 103 (124)
+++.||+|+.++++++.+++|+++.||+|||||||.|||.++|+..+..++.. ...+.+.|++..+++..+|+|.||
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~---~~~~~~~I~i~~d~~~~~L~I~Dn 79 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVL---GESPRLCIRVVPDKENKTLTVEDN 79 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhc---CCCCceEEEEEEcCCCCEEEEEEC
Confidence 67899999999999999999999999999999999999999998876644321 345678999999888899999999
Q ss_pred CCCCCHHHHHhhccccccCCC
Q psy15895 104 GIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 104 GiGM~~e~l~~~l~~i~~S~~ 124 (124)
|+||+++++.++||+||+||+
T Consensus 80 GiGMt~edl~~~LgtIa~SGt 100 (701)
T PTZ00272 80 GIGMTKADLVNNLGTIARSGT 100 (701)
T ss_pred CCCCCHHHHHHHhhhhhhcch
Confidence 999999999999999999986
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=99.86 E-value=6.2e-22 Score=175.05 Aligned_cols=98 Identities=58% Similarity=0.903 Sum_probs=88.1
Q ss_pred ceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEc
Q psy15895 24 EKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDS 103 (124)
Q Consensus 24 e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~Dn 103 (124)
+++.||+|+.+++++|.+++|+++.||+||||+||.|||.++||..+...+.. .....+.|+|..+.+..+|+|.||
T Consensus 66 e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~---~~~~~~~I~I~~D~~~~tLtI~Dn 142 (814)
T PTZ00130 66 EQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVL---GEEKKLEIRISANKEKNILSITDT 142 (814)
T ss_pred ceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhc---CCCCCceEEEEECCCCCEEEEEEC
Confidence 78999999999999999999999999999999999999999999887654322 344578888888888899999999
Q ss_pred CCCCCHHHHHhhccccccCCC
Q psy15895 104 GIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 104 GiGM~~e~l~~~l~~i~~S~~ 124 (124)
|+||+++++.++||+||+||+
T Consensus 143 GIGMT~eEl~~nLgTIA~Sgt 163 (814)
T PTZ00130 143 GIGMTKEDLINNLGTIAKSGT 163 (814)
T ss_pred CCCCCHHHHHHHhhhhccccc
Confidence 999999999999999999996
No 4
>KOG0019|consensus
Probab=99.84 E-value=3.9e-21 Score=164.63 Aligned_cols=98 Identities=69% Similarity=0.918 Sum_probs=92.4
Q ss_pred ccceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEE
Q psy15895 22 NAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQ 101 (124)
Q Consensus 22 ~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~ 101 (124)
..+++.||+++.++++++.+.+|+++.||+||||+||.||+.++||..+..+.. .++.+.|++.++++..+++|+
T Consensus 33 ~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~-----~~~~l~I~i~~nk~~~tlti~ 107 (656)
T KOG0019|consen 33 PQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEK-----ALPELEIRIITNKDKRTITIQ 107 (656)
T ss_pred cccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCccc-----cccceeEEeccCCCcceEEEE
Confidence 338999999999999999999999999999999999999999999998877663 388999999999999999999
Q ss_pred EcCCCCCHHHHHhhccccccCCC
Q psy15895 102 DSGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 102 DnGiGM~~e~l~~~l~~i~~S~~ 124 (124)
|+|+||+++++.++||+|++|||
T Consensus 108 DtGIGMTk~dLvnnLGTIAkSGt 130 (656)
T KOG0019|consen 108 DTGIGMTKEDLVNNLGTIAKSGS 130 (656)
T ss_pred ecCCCcCHHHHHhhhhhhhhccc
Confidence 99999999999999999999997
No 5
>PRK05218 heat shock protein 90; Provisional
Probab=99.82 E-value=4e-20 Score=160.37 Aligned_cols=99 Identities=58% Similarity=0.891 Sum_probs=84.9
Q ss_pred cceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEE
Q psy15895 23 AEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQD 102 (124)
Q Consensus 23 ~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~D 102 (124)
.+++.||+++.+++++|.+.+|+++.+|+|||||||.|||.++|+..+...+.. ......+|+|..+++..+|+|+|
T Consensus 3 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~---~~~~~~~I~I~~d~~~~~i~I~D 79 (613)
T PRK05218 3 METGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALY---EGDGDLKIRISFDKEARTLTISD 79 (613)
T ss_pred cceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCcccc---CCCCCcEEEEEEcCCCCeEEEEE
Confidence 478999999999999999999999999999999999999999998776543321 23445677777777777899999
Q ss_pred cCCCCCHHHHHhhccccccCCC
Q psy15895 103 SGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 103 nGiGM~~e~l~~~l~~i~~S~~ 124 (124)
||+||+++++.++|+++|.||+
T Consensus 80 nG~GMt~eel~~~l~~ia~Sg~ 101 (613)
T PRK05218 80 NGIGMTREEVIENLGTIAKSGT 101 (613)
T ss_pred CCCCCCHHHHHHHHHhhccccc
Confidence 9999999999999999999984
No 6
>KOG0020|consensus
Probab=99.81 E-value=2e-20 Score=158.33 Aligned_cols=101 Identities=51% Similarity=0.823 Sum_probs=93.0
Q ss_pred cccceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEE
Q psy15895 21 DNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTI 100 (124)
Q Consensus 21 ~~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I 100 (124)
++.++|.||+++++++.+|.+.+|.++.+|+||||+||.||+.+||...|.+++.. ....++.|+|..++....+.|
T Consensus 70 ~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L---~~~~el~ikIK~Dke~klLhi 146 (785)
T KOG0020|consen 70 SKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVL---GETEELEIKIKADKEKKLLHI 146 (785)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHh---CcCcceEEEEeechhhCeeeE
Confidence 45689999999999999999999999999999999999999999999988766543 446789999999999999999
Q ss_pred EEcCCCCCHHHHHhhccccccCCC
Q psy15895 101 QDSGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 101 ~DnGiGM~~e~l~~~l~~i~~S~~ 124 (124)
.|+|+||+.+++.++||+|++||+
T Consensus 147 ~DtGiGMT~edLi~NLGTIAkSGT 170 (785)
T KOG0020|consen 147 TDTGIGMTREDLIKNLGTIAKSGT 170 (785)
T ss_pred ecccCCccHHHHHHhhhhhhcccH
Confidence 999999999999999999999995
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=99.73 E-value=8.9e-18 Score=145.59 Aligned_cols=90 Identities=37% Similarity=0.640 Sum_probs=76.7
Q ss_pred eeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcC
Q psy15895 25 KHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSG 104 (124)
Q Consensus 25 ~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnG 104 (124)
.+.||+|+.++++++...+|+++.+|+|||+|||.||+.++++... ...+.|+|.+. +++..+|+|.|||
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~---------~~~~~I~I~~~-d~~~~~l~I~DnG 71 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDP---------TAPGRIRIELT-DAGGGTLIVEDNG 71 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCC---------CCCceEEEEEc-cCCCcEEEEEeCC
Confidence 3679999999999999999999999999999999999988665420 12355566554 7778999999999
Q ss_pred CCCCHHHHHhhccccccCCC
Q psy15895 105 IGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 105 iGM~~e~l~~~l~~i~~S~~ 124 (124)
+||+++++.++|++||+||.
T Consensus 72 iGmt~eel~~~l~~ig~S~k 91 (601)
T PRK14083 72 IGLTEEEVHEFLATIGRSSK 91 (601)
T ss_pred CCCCHHHHHHHHhhhccchh
Confidence 99999999999999999984
No 8
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=98.93 E-value=2.7e-09 Score=76.36 Aligned_cols=55 Identities=44% Similarity=0.628 Sum_probs=42.3
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
...++|||+||+||... .|.|.+..+ .+...|.|.|||.||+.+++.+ ++.+|.|
T Consensus 4 ~~al~ElI~Ns~DA~a~-------------------~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s 59 (137)
T PF13589_consen 4 EDALRELIDNSIDAGAT-------------------NIKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRS 59 (137)
T ss_dssp THHHHHHHHHHHHHHHH-------------------HEEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHT
T ss_pred HHHHHHHHHHHHHccCC-------------------EEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCC
Confidence 45688899999999865 257777665 5789999999999999999966 7788876
No 9
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=98.76 E-value=1.6e-08 Score=87.51 Aligned_cols=85 Identities=25% Similarity=0.395 Sum_probs=64.8
Q ss_pred cccceeEehhhhhhhHHHHhhhhcC------------------c----HHHHHHHHHhhHHHHHHHHhhhcccCCCCCCC
Q psy15895 21 DNAEKHEFQAETRMLLDIVAKSLYS------------------D----KEVFIRELISNASDALEKLRYNQLSEVMPFPT 78 (124)
Q Consensus 21 ~~~e~~~f~~ei~~~l~ll~~~~y~------------------~----~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~ea 78 (124)
+......+..-+++.+.++..-+-. + .||.+| ||+||.||+..
T Consensus 451 ~a~~~v~l~~ai~~Al~ll~~R~~~~~~~l~~~~~~~~~~V~~~~iRLeQVLvN-Ll~NALDA~~~-------------- 515 (603)
T COG4191 451 DAAGPVSLREAIEGALELLRGRLRAAGVELELDLPDAPLWVMANEIRLEQVLVN-LLQNALDAMAG-------------- 515 (603)
T ss_pred cccCCccHHHHHHHHHHHHHHhhhccCceeeccCCCCCceeecchhhHHHHHHH-HHHHHHHHhcC--------------
Confidence 3345556666666666666432211 1 367777 99999999975
Q ss_pred CCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 79 DHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 79 m~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
++.+.+.|.+..+++.+.|+|.|||+||+++.+ ..+++|+++
T Consensus 516 -~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~-~~lFePF~T 557 (603)
T COG4191 516 -QEDRRLSIRAQREGGQVVLTVRDNGPGIAPEAL-PHLFEPFFT 557 (603)
T ss_pred -CCCCeeEEEEEecCCeEEEEEccCCCCCCHHHH-HhhcCCccc
Confidence 467899999999999999999999999999999 777777765
No 10
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.69 E-value=5.3e-08 Score=65.80 Aligned_cols=51 Identities=31% Similarity=0.609 Sum_probs=41.9
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcc
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLG 117 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~ 117 (124)
.+.||++|| +++. ++++.|.|.+..+++.+.|+|+|+|.|||++++++.|.
T Consensus 9 il~~ll~Na------~~~~-----------~~~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~ 59 (111)
T PF02518_consen 9 ILSELLDNA------IKHS-----------PEGGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFE 59 (111)
T ss_dssp HHHHHHHHH------HHHH-----------HHTSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCS
T ss_pred HHHHHHHHH------HHHh-----------cCCCEEEEEEEEecCeEEEEEEeccccccccccccchh
Confidence 356699999 5655 23589999999999999999999999999999955443
No 11
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.67 E-value=2.9e-08 Score=84.16 Aligned_cols=59 Identities=22% Similarity=0.378 Sum_probs=50.0
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
.++||+.||+|||+.- .--+.|+|+|... +++..+.|.|||+|||.+++++.||++-.|
T Consensus 40 tv~ElV~NSLDA~eea--------------GILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~Lyg 99 (538)
T COG1389 40 TVHELVTNSLDACEEA--------------GILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYG 99 (538)
T ss_pred HHHHHHhcchhhHHhc--------------CCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhcc
Confidence 3799999999999862 1246789999865 789999999999999999999999987654
No 12
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=98.42 E-value=8.1e-07 Score=71.82 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=40.9
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+.+|+.|| +||.... + +..+.+.|.+...++.+.|+|.|||+|||++.+ ..+++++
T Consensus 392 l~Nl~~NA------ik~~~~~----~---~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~-~~iF~~f 447 (494)
T TIGR02938 392 FKALVDNA------IEAMNIK----G---WKRRELSITTALNGDLIVVSILDSGPGIPQDLR-YKVFEPF 447 (494)
T ss_pred HHHHHHHH------HHHhhcc----C---CCcceEEEEEEecCCEEEEEEEeCCCCCCHHHH-HHhcCCC
Confidence 44499999 7776311 0 123567787778889999999999999999998 4555554
No 13
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=98.40 E-value=1e-06 Score=72.27 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=42.9
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
++.| |+.|| +||. ++++.+.|.+..+++.+.|+|.|||+||+++.+ +++++++
T Consensus 321 vl~N-Ll~NA------ik~~-----------~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~-~~if~~f 373 (430)
T PRK11006 321 AISN-LVYNA------VNHT-----------PEGTHITVRWQRVPQGAEFSVEDNGPGIAPEHI-PRLTERF 373 (430)
T ss_pred HHHH-HHHHH------HhcC-----------CCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHH-HHhccCc
Confidence 4444 99999 7886 456789999888888999999999999999999 4555544
No 14
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=98.39 E-value=3.4e-07 Score=82.02 Aligned_cols=56 Identities=25% Similarity=0.522 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 47 KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 47 ~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
.||++| ||.|| .||+ |++.+|.|.+..+.+++.+.|.|+|.|||++++++-|-.+.
T Consensus 777 eQVLiN-LleNA------~Kya-----------p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~ 832 (890)
T COG2205 777 EQVLIN-LLENA------LKYA-----------PPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFY 832 (890)
T ss_pred HHHHHH-HHHHH------HhhC-----------CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhh
Confidence 478888 99999 8998 78899999999999999999999999999999966554443
No 15
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=98.38 E-value=1.2e-06 Score=69.75 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=40.9
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhh
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSN 115 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~ 115 (124)
+.+|+.|| +||. +.++.+.|.+..+++.+.|+|+|||+||+++++++.
T Consensus 252 l~nLi~NA------~k~~-----------~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~i 299 (356)
T PRK10755 252 LRNLVENA------HRYS-----------PEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGEL 299 (356)
T ss_pred HHHHHHHH------HhhC-----------CCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHh
Confidence 55689999 8886 456789999988899999999999999999999543
No 16
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=98.37 E-value=1.9e-06 Score=69.67 Aligned_cols=50 Identities=30% Similarity=0.509 Sum_probs=41.4
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLG 117 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~ 117 (124)
+.+++.|| +||. +.++.|.|.+..+++.+.|+|.|||+|||++.+.+.|-
T Consensus 358 ~~nll~Na------i~~~-----------~~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~ 407 (457)
T TIGR01386 358 ISNLLSNA------LRHT-----------PDGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFD 407 (457)
T ss_pred HHHHHHHH------HHcC-----------CCCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcc
Confidence 45688888 7876 45678999999999999999999999999999855443
No 17
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.37 E-value=5.7e-07 Score=74.72 Aligned_cols=53 Identities=30% Similarity=0.585 Sum_probs=46.7
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGT 118 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~ 118 (124)
||+-| +|.|| +||. |.+|++++.+...+.++.|+|.|.|.|||++++.+.|-.
T Consensus 345 QVldN-ii~NA------~KYs-----------P~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdr 397 (459)
T COG5002 345 QVLDN-IISNA------LKYS-----------PDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDR 397 (459)
T ss_pred HHHHH-HHHHH------hhcC-----------CCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHH
Confidence 45556 89999 8998 789999999999999999999999999999999776643
No 18
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.35 E-value=1.4e-06 Score=65.51 Aligned_cols=54 Identities=26% Similarity=0.494 Sum_probs=43.7
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccCC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S~ 123 (124)
+.+|+.|| +++. + ++.+.|.+...++.+.++|.|||+||+++.+ ++++++++++
T Consensus 233 l~nLi~NA------i~~~-----------~-~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~-~~if~~~~~~ 286 (336)
T COG0642 233 LVNLLSNA------IKYT-----------P-GGEITISVRQDDEQVTISVEDTGPGIPEEEL-ERIFEPFFRT 286 (336)
T ss_pred HHHHHHHH------hccC-----------C-CCeEEEEEEecCCeEEEEEEcCCCCCCHHHH-HHhccCeecc
Confidence 34499999 7776 4 6889999988888999999999999999997 6666666543
No 19
>PRK09303 adaptive-response sensory kinase; Validated
Probab=98.35 E-value=1.6e-06 Score=70.72 Aligned_cols=54 Identities=24% Similarity=0.459 Sum_probs=41.5
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEE-cCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRIST-DKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~-~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+++.| |+.|| +||. +.++.+.|.+.. +++.+.|+|.|||+||+++.+ ++++++.
T Consensus 275 qvl~N-Ll~NA------ik~~-----------~~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~-~~iF~pf 329 (380)
T PRK09303 275 QVLLN-LLDNA------IKYT-----------PEGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQ-ERIFEDR 329 (380)
T ss_pred HHHHH-HHHHH------HhcC-----------CCCceEEEEEEecCCCEEEEEEEEcCCCCCHHHH-HHHccCc
Confidence 34555 99999 8887 467888888754 556799999999999999999 4544443
No 20
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=98.33 E-value=1.7e-06 Score=75.52 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=46.0
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccCC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S~ 123 (124)
+.+|++|| +|+. +.++.+.|++..+++.+.|+|.|||+||+++.+.+++++++.|+
T Consensus 584 l~nLl~NA------ik~~-----------~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~ 639 (679)
T TIGR02916 584 LGHLVQNA------LEAT-----------PGEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTT 639 (679)
T ss_pred HHHHHHHH------HHhC-----------CCCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCC
Confidence 44599999 7776 45678999999888999999999999999999668877776553
No 21
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=98.33 E-value=1.9e-06 Score=70.37 Aligned_cols=49 Identities=31% Similarity=0.509 Sum_probs=40.8
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
+.+|+.|| +++. ++++.+.|.+..+++.+.|.|.|||+|||++++.+.|
T Consensus 357 l~nll~NA------i~~~-----------~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf 405 (466)
T PRK10549 357 FNNLLENS------LRYT-----------DSGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLF 405 (466)
T ss_pred HHHHHHHH------HHhC-----------CCCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhc
Confidence 34488888 7775 4678999999999999999999999999999995443
No 22
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=98.32 E-value=1.4e-06 Score=74.98 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=50.0
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccCC
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S~ 123 (124)
.+.+||+||.||... . .+.++|.+.+..+++++.|+|.|||||||++..+ .+++-|.|.
T Consensus 431 IlGNLidNA~eA~~~--~------------~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~-~iFe~G~St 489 (537)
T COG3290 431 ILGNLIDNALEALLA--P------------EENKEIELSLSDRGDELVIEVADTGPGIPPEVRD-KIFEKGVST 489 (537)
T ss_pred HHHHHHHHHHHHhhc--c------------CCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHH-HHHhcCccc
Confidence 467799999999864 1 3568999999999999999999999999999995 777777763
No 23
>PRK10364 sensor protein ZraS; Provisional
Probab=98.30 E-value=2.3e-06 Score=70.62 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=42.2
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
+.+|++|| +|+. ..++.+.|.+..+++.+.|+|.|||+||+++.+ +.+++.+.
T Consensus 353 l~NLl~NA------~k~~-----------~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~-~~if~~~~ 405 (457)
T PRK10364 353 LLNLYLNA------IQAI-----------GQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYF 405 (457)
T ss_pred HHHHHHHH------HHhc-----------CCCCeEEEEEEEeCCeEEEEEEECCCCCCHHHH-HHHhCccc
Confidence 33488999 6775 346789999998888999999999999999999 45555443
No 24
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=98.30 E-value=2.3e-06 Score=70.95 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=43.2
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
+.+|+.|| +++... +.++.+.|++..+++.+.|+|.|||+||+++++ +.++++++|
T Consensus 438 l~nLl~NA------i~~~~~---------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~-~~iF~~~~~ 493 (542)
T PRK11086 438 LGNLIENA------LEAVGG---------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEI-DAIFDKGYS 493 (542)
T ss_pred HHHHHHHH------HHHhhc---------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHH-HHHHhCCCc
Confidence 44599999 555421 346789999998999999999999999999999 555555554
No 25
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=98.23 E-value=3.1e-06 Score=74.89 Aligned_cols=50 Identities=22% Similarity=0.512 Sum_probs=40.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+.+|+.|| +||+ ..|.|.|++..+++.+.|+|+|||+||+++++ +.++++
T Consensus 518 l~NLl~NA------ik~~------------~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~-~~if~~ 567 (921)
T PRK15347 518 LVNLLGNA------VKFT------------ETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQ-QQIFTP 567 (921)
T ss_pred HHHHHHHH------hhcC------------CCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHH-HHHhcC
Confidence 33499999 7886 24669999988899999999999999999999 444444
No 26
>PRK10490 sensor protein KdpD; Provisional
Probab=98.17 E-value=5.9e-06 Score=74.85 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=44.5
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
+++.| |+.|| +||. +.++.+.|.+..+++.+.|+|.|||+||+++++ +++++++.
T Consensus 781 qVL~N-LL~NA------ik~s-----------~~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~-~~IFepF~ 835 (895)
T PRK10490 781 RVLIN-LLENA------VKYA-----------GAQAEIGIDAHVEGERLQLDVWDNGPGIPPGQE-QLIFDKFA 835 (895)
T ss_pred HHHHH-HHHHH------HHhC-----------CCCCeEEEEEEEeCCEEEEEEEECCCCCCHHHH-HHhcCCCc
Confidence 34555 99999 7886 467789999998999999999999999999998 55555543
No 27
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.16 E-value=5.6e-06 Score=71.67 Aligned_cols=55 Identities=29% Similarity=0.488 Sum_probs=40.9
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEE---cCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRIST---DKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~---~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
++|||+||+||+..- ...+.|.|.+.. +++...|+|.|||+||++++++..|+.+
T Consensus 41 LkNLIeNAIDa~~~~--------------gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f 98 (535)
T PRK04184 41 VKELVDNSLDACEEA--------------GILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKL 98 (535)
T ss_pred HHHHHHHHHHHhhhc--------------CCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhh
Confidence 677999997766430 012467777765 3557899999999999999998777654
No 28
>PRK10604 sensor protein RstB; Provisional
Probab=98.15 E-value=8.4e-06 Score=67.30 Aligned_cols=49 Identities=29% Similarity=0.523 Sum_probs=40.2
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+.+|+.|| +||. ++.+.|.+..+++.+.|+|.|||+||+++++. +++.+
T Consensus 324 l~NLl~NA------ik~~-------------~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~-~if~~ 372 (433)
T PRK10604 324 LDNLLNNA------LRYA-------------HSRVRVSLLLDGNQACLIVEDDGPGIPPEERE-RVFEP 372 (433)
T ss_pred HHHHHHHH------HHhC-------------CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHh-hcCCC
Confidence 45588999 7775 36788999988999999999999999999994 44444
No 29
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.14 E-value=6.7e-06 Score=73.60 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=41.9
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
.++|||.|| ++|+.- . ...+.|.|.+...++.+.|.|.|||+||+++++++.|..++
T Consensus 50 VLkNLIeNA------LDAs~~----~----gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~ 106 (795)
T PRK14868 50 AVKEAVDNA------LDATEE----A----GILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLL 106 (795)
T ss_pred HHHHHHHHH------HHhCcc----c----CCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhc
Confidence 367799999 555410 0 01246888887777789999999999999999977665443
No 30
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=98.14 E-value=7.3e-06 Score=73.12 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=42.1
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc---------------CCceEEEEEEcCCCCCHHHHH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD---------------KQNRILTIQDSGIGMTKEELK 113 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~---------------~~~~~I~I~DnGiGM~~e~l~ 113 (124)
++.| |+.|| +||. +.++.+.|.+... ++.+.|.|.|||+||+++.+
T Consensus 564 vl~N-Ll~NA------ik~~-----------~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~- 624 (828)
T PRK13837 564 VLMN-LCSNA------AQAM-----------DGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVL- 624 (828)
T ss_pred HHHH-HHHHH------HHHc-----------ccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHH-
Confidence 4445 99999 7776 4567888888765 67799999999999999999
Q ss_pred hhcccccc
Q psy15895 114 SNLGTIAR 121 (124)
Q Consensus 114 ~~l~~i~~ 121 (124)
..+++++.
T Consensus 625 ~~iFe~F~ 632 (828)
T PRK13837 625 PHIFEPFF 632 (828)
T ss_pred HHhhCCcc
Confidence 45555544
No 31
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=98.14 E-value=7.2e-06 Score=66.54 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=41.2
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+.+|+.|| +|+. .+++.+.|++..+++.+.|+|+|||+|||++++. .++++
T Consensus 373 l~nli~Na------~~~~-----------~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~-~i~~~ 423 (475)
T PRK11100 373 LGNLLDNA------IDFS-----------PEGGTITLSAEVDGEQVALSVEDQGPGIPDYALP-RIFER 423 (475)
T ss_pred HHHHHHHH------HHhC-----------CCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHH-HHHHH
Confidence 45588888 7775 3568899999999999999999999999999984 44343
No 32
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.11 E-value=5.7e-06 Score=66.49 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=38.6
Q ss_pred CcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 45 SDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 45 ~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
.+..-.+.|||+||.||- ...|.|.+.. ++...|.|.|||.||+++++. .+++.+.+
T Consensus 21 ~~~~~~l~eLi~Na~dA~-------------------a~~I~i~~~~-~~~~~i~V~DnG~Gi~~~~l~-~~~~~~~t 77 (312)
T TIGR00585 21 ERPASVVKELVENSLDAG-------------------ATRIDVEIEE-GGLKLIEVSDNGSGIDKEDLP-LACERHAT 77 (312)
T ss_pred hhHHHHHHHHHHHHHHCC-------------------CCEEEEEEEe-CCEEEEEEEecCCCCCHHHHH-HHhhCCCc
Confidence 344445677999996642 1356666654 345569999999999999995 45554443
No 33
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=98.11 E-value=7.2e-06 Score=73.06 Aligned_cols=51 Identities=29% Similarity=0.638 Sum_probs=40.6
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCc-eEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQN-RILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~-~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
++.| ||.|| +||. +.|.+.|.+...++. +.|+|.|+|+|||++++ ..++++
T Consensus 583 il~n-Li~NA------ik~~------------~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~-~~if~~ 634 (968)
T TIGR02956 583 VLIN-LVGNA------IKFT------------DRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQ-ATLFDA 634 (968)
T ss_pred HHHH-HHHHH------HhhC------------CCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHH-HHHHhh
Confidence 4444 99999 8886 357789999887777 99999999999999998 444433
No 34
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=98.10 E-value=9.9e-06 Score=71.58 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=42.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+.+|+.|| +||. ++++.|.|.+..+++.+.|+|.|||+||+++.+ +.+++++
T Consensus 602 l~NLI~NA------ik~s-----------~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~-~~IFe~F 653 (703)
T TIGR03785 602 LDKLVDNA------REFS-----------PEDGLIEVGLSQNKSHALLTVSNEGPPLPEDMG-EQLFDSM 653 (703)
T ss_pred HHHHHHHH------HHHC-----------CCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHH-HHHhCCC
Confidence 44588998 7886 456779999998899999999999999999999 5555444
No 35
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=98.08 E-value=8.3e-06 Score=71.67 Aligned_cols=50 Identities=28% Similarity=0.614 Sum_probs=39.3
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
+|+.| |+.|| +||. ..|.+.|.+... ++.+.|+|.|||+|||++++.+.|
T Consensus 401 qvl~N-Ll~NA------ik~~------------~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF 451 (779)
T PRK11091 401 QILWN-LISNA------VKFT------------QQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIF 451 (779)
T ss_pred HHHHH-HHHHH------HHhC------------CCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHH
Confidence 45566 99999 7876 246688888776 677999999999999999994433
No 36
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=98.07 E-value=1.1e-05 Score=71.64 Aligned_cols=50 Identities=34% Similarity=0.612 Sum_probs=40.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+.+|+.|| +||. ..|.+.|.+..+++.+.|.|.|||+||+++.+ +.++++
T Consensus 566 l~NLl~NA------ik~~------------~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~-~~if~~ 615 (914)
T PRK11466 566 ITNLLSNA------LRFT------------DEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKL-AEIFQP 615 (914)
T ss_pred HHHHHHHH------HHhC------------CCCeEEEEEEEcCCEEEEEEEECCCCCCHHHH-HHHhch
Confidence 34489999 7876 35689999988888999999999999999999 444444
No 37
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=98.05 E-value=1.6e-05 Score=65.64 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=39.6
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCc-eEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQN-RILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~-~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+.+++.|| +++. ..++.+.|.+...++. +.|+|.|||+||+++.+ +.++.++
T Consensus 505 ~~nli~na------~~~~-----------~~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~-~~~f~~~ 557 (607)
T PRK11360 505 LLNILINA------VQAI-----------SARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELL-KKIFDPF 557 (607)
T ss_pred HHHHHHHH------HHHh-----------cCCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHH-hhhcCCc
Confidence 34488888 6665 3467889988877666 99999999999999998 4444443
No 38
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=98.05 E-value=1.6e-05 Score=66.63 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=41.9
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
++.| |++||+ ++...+ . +.++.+.|.+..+++.+.|.|.|||+|||++.+ +++++.+.|
T Consensus 436 vl~n-Ll~NAi------~~~~~~--~-----~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~-~~iF~~~~~ 494 (545)
T PRK15053 436 IVGN-LLDNAF------EASLRS--D-----EGNKIVELFLSDEGDDVVIEVADQGCGVPESLR-DKIFEQGVS 494 (545)
T ss_pred HHHH-HHHHHH------HHHhhC--C-----CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHH-HHHhCCCCC
Confidence 4444 999994 443211 0 234678888888888999999999999999998 455555443
No 39
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=98.05 E-value=1.3e-05 Score=72.81 Aligned_cols=53 Identities=25% Similarity=0.448 Sum_probs=39.5
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcC---CceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDK---QNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~---~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+|+.| |+.|| +|+. ..|.+.|.+.... +.+.|+|.|||+||+++.+ ++++++.
T Consensus 568 QVL~N-LL~NA------ik~t------------~~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l-~~IFePF 623 (894)
T PRK10618 568 KILLL-LLNYA------ITTT------------AYGKITLEVDQDESSPDRLTIRILDTGAGVSIKEL-DNLHFPF 623 (894)
T ss_pred HHHHH-HHHHH------HHhC------------CCCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHH-HHhcCcc
Confidence 34455 99999 7876 3567888876533 5699999999999999999 4555444
No 40
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=98.05 E-value=1.7e-05 Score=64.37 Aligned_cols=47 Identities=28% Similarity=0.542 Sum_probs=38.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
+.+|+.|| +||. .+.+.|.+..+++.+.|+|.|+|+||+++++.+.|
T Consensus 336 l~NLl~NA------~k~~-------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~ 382 (435)
T PRK09467 336 LANLVVNA------ARYG-------------NGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLF 382 (435)
T ss_pred HHHHHHHH------HHhC-------------CCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhc
Confidence 45588888 7775 36788888888888999999999999999994443
No 41
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=98.04 E-value=1.7e-05 Score=64.46 Aligned_cols=47 Identities=36% Similarity=0.664 Sum_probs=38.2
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
+.+|++|| +||. .+.+.|.+..+++.+.|+|.|||+||+++++.+.|
T Consensus 358 l~nli~NA------~~~~-------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 404 (461)
T PRK09470 358 LENIVRNA------LRYS-------------HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIF 404 (461)
T ss_pred HHHHHHHH------HHhC-------------CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhc
Confidence 55688888 7775 24578888888899999999999999999995444
No 42
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.04 E-value=1.6e-05 Score=68.21 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=41.0
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcC-CceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDK-QNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~-~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
.++||+.||+||+..- ...+.|.|.+...+ +...|+|.|||+||+++++++.|..+.
T Consensus 32 VlkELVeNAIDA~~~~--------------g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~ 89 (488)
T TIGR01052 32 VIHELVTNSLDACEEA--------------GILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKML 89 (488)
T ss_pred HHHHHHHHHHHHhhcc--------------CCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhcc
Confidence 3667999997776430 11246777776543 467899999999999999977766543
No 43
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=98.01 E-value=2.1e-05 Score=60.44 Aligned_cols=51 Identities=29% Similarity=0.573 Sum_probs=40.7
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+.+|+.|| +++. +.++.+.|.+...++.+.+.|.|||.||+++.+ .+++.+
T Consensus 234 l~nll~Na------i~~~-----------~~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~-~~if~~ 284 (333)
T TIGR02966 234 FSNLVSNA------IKYT-----------PEGGTITVRWRRDGGGAEFSVTDTGIGIAPEHL-PRLTER 284 (333)
T ss_pred HHHHHHHh------heeC-----------CCCCeEEEEEEEcCCEEEEEEEecCCCCCHHHH-hhhccC
Confidence 45588888 6775 356788999888888899999999999999999 444443
No 44
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=97.98 E-value=1.9e-05 Score=71.84 Aligned_cols=52 Identities=25% Similarity=0.505 Sum_probs=41.6
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+++.| |+.|| +||+ ..|.+.|.+..+++.+.|+|.|||+||+++++ ++++++
T Consensus 565 qvl~N-Ll~NA------ik~t------------~~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~-~~lFep 616 (924)
T PRK10841 565 QVISN-LLSNA------IKFT------------DTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEV-VRLFDP 616 (924)
T ss_pred HHHHH-HHHHH------HhhC------------CCCcEEEEEEEeCCEEEEEEEEcCcCCCHHHH-HHHhcc
Confidence 35555 99999 8886 24678888888888999999999999999999 444444
No 45
>PRK09835 sensor kinase CusS; Provisional
Probab=97.98 E-value=2.6e-05 Score=63.90 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=39.6
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhh
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSN 115 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~ 115 (124)
+.+|+.|| +||+ ++++.|.|.+..+++.+.|+|.|+|.||++++++..
T Consensus 380 l~nll~Na------~~~~-----------~~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~i 427 (482)
T PRK09835 380 ISNLLSNA------LRYT-----------PAGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRL 427 (482)
T ss_pred HHHHHHHH------HhcC-----------CCCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHH
Confidence 45588888 7876 456779999988888899999999999999999543
No 46
>PRK13560 hypothetical protein; Provisional
Probab=97.98 E-value=1.4e-05 Score=68.88 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=36.4
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e~l 112 (124)
+.+|+.|| +||+... ...+.|.|.+... ++.+.|+|+|||+|||++..
T Consensus 716 l~NLl~NA------ik~~~~~--------~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~~~ 764 (807)
T PRK13560 716 ISELLSNA------LKHAFPD--------GAAGNIKVEIREQGDGMVNLCVADDGIGLPAGFD 764 (807)
T ss_pred HHHHHHHH------HHhhccC--------CCCceEEEEEEEcCCCEEEEEEEeCCCcCCcccc
Confidence 44499999 7886310 2346788888776 56899999999999998754
No 47
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=97.95 E-value=7.8e-06 Score=72.00 Aligned_cols=48 Identities=27% Similarity=0.470 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHHHHHhh
Q psy15895 47 KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKEELKSN 115 (124)
Q Consensus 47 ~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e~l~~~ 115 (124)
+--.++||+.||+||= -=+|.|..+ ++...|+|+|||+||++++++--
T Consensus 24 PaSVVKELVENSlDAG---------------------At~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la 72 (638)
T COG0323 24 PASVVKELVENSLDAG---------------------ATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLA 72 (638)
T ss_pred HHHHHHHHHhcccccC---------------------CCEEEEEEccCCccEEEEEECCCCCCHHHHHHH
Confidence 4456899999995442 235666544 45666999999999999999543
No 48
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.93 E-value=2.4e-05 Score=60.54 Aligned_cols=49 Identities=33% Similarity=0.500 Sum_probs=40.8
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCc--eEEEEEEcCCCCCHHH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQN--RILTIQDSGIGMTKEE 111 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~--~~I~I~DnGiGM~~e~ 111 (124)
+++|||++|| +||..+. .+.|+|.|.+..+++. ..+.|+|||.|+|++.
T Consensus 125 liv~EL~tNa------~Khaf~~--------~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~~ 175 (221)
T COG3920 125 LIVHELVTNA------LKHAFLS--------RPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEA 175 (221)
T ss_pred HHHHHHHHHH------HHhcCCC--------CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCCC
Confidence 4689999999 9998642 2578999999887764 8999999999999753
No 49
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.89 E-value=4.2e-05 Score=64.63 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=38.1
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+.+|+.|| +||+. +.+.|.+..+++.+.|+|.|+|+||+++.++ .++++
T Consensus 383 l~NLi~NA------ik~~~-------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~-~iF~~ 431 (485)
T PRK10815 383 MGNVLDNA------CKYCL-------------EFVEISARQTDEHLHIVVEDDGPGIPESKRE-LIFDR 431 (485)
T ss_pred HHHHHHHH------HHhcC-------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHH-HHhCC
Confidence 44588998 77761 2467778788889999999999999999994 44444
No 50
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.87 E-value=3.3e-05 Score=67.72 Aligned_cols=51 Identities=29% Similarity=0.545 Sum_probs=38.4
Q ss_pred cHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 46 DKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 46 ~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
.+.-.+.|||+||+||- ...|.|.+. +++...|+|.|||+||+++++...+
T Consensus 22 ~~~svvkElveNsiDAg-------------------at~I~v~i~-~~g~~~i~V~DnG~Gi~~~~~~~~~ 72 (617)
T PRK00095 22 RPASVVKELVENALDAG-------------------ATRIDIEIE-EGGLKLIRVRDNGCGISKEDLALAL 72 (617)
T ss_pred CHHHHHHHHHHHHHhCC-------------------CCEEEEEEE-eCCeEEEEEEEcCCCCCHHHHHHHh
Confidence 35556889999997642 245666664 4567899999999999999985543
No 51
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=97.78 E-value=8.4e-05 Score=58.59 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=37.4
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcC------C----ceEEEEEEcCCCCCHHHHHhhcc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDK------Q----NRILTIQDSGIGMTKEELKSNLG 117 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~------~----~~~I~I~DnGiGM~~e~l~~~l~ 117 (124)
+++.| |+.|| +++.. +.++.+.|.+.... . ...|.|.|||+||+++.+ +.++
T Consensus 240 ~vl~n-Ll~NA------~~~~~----------~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~-~~iF 301 (348)
T PRK11073 240 QVLLN-IVRNA------LQALG----------PEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQ-DTLF 301 (348)
T ss_pred HHHHH-HHHHH------HHHhc----------cCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHH-hhcc
Confidence 34555 99999 66642 24667777664321 1 357999999999999988 5555
Q ss_pred cccc
Q psy15895 118 TIAR 121 (124)
Q Consensus 118 ~i~~ 121 (124)
+++.
T Consensus 302 ~~~~ 305 (348)
T PRK11073 302 YPMV 305 (348)
T ss_pred CCcc
Confidence 5543
No 52
>PRK13557 histidine kinase; Provisional
Probab=97.78 E-value=9.6e-05 Score=60.90 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=37.3
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEE---------------cCCceEEEEEEcCCCCCHHHHH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRIST---------------DKQNRILTIQDSGIGMTKEELK 113 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~---------------~~~~~~I~I~DnGiGM~~e~l~ 113 (124)
++.| |+.|| +++. +.++.+.|.... +++.+.|+|.|||+||+++..
T Consensus 281 vl~n-ll~NA------~~~~-----------~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~- 341 (540)
T PRK13557 281 ALLN-VLINA------RDAM-----------PEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEIL- 341 (540)
T ss_pred HHHH-HHHHH------HHhc-----------ccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHH-
Confidence 4455 89999 5665 345666666542 445789999999999999998
Q ss_pred hhccccc
Q psy15895 114 SNLGTIA 120 (124)
Q Consensus 114 ~~l~~i~ 120 (124)
..++.++
T Consensus 342 ~~if~~~ 348 (540)
T PRK13557 342 ARVMDPF 348 (540)
T ss_pred HhccCCC
Confidence 4444443
No 53
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=97.77 E-value=7.8e-05 Score=66.00 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=41.2
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
.++||+.||+||+..- ...+.|.|.+... ++.+.|+|.|||+||++++++..|..+
T Consensus 40 VVkELVeNAIDA~~~~--------------g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF 96 (659)
T PRK14867 40 IIHELVTNSLDACEEA--------------EILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKM 96 (659)
T ss_pred HHHHHHHHHHHHhhcc--------------CCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccc
Confidence 3577999997776430 1135778888764 356889999999999999997766553
No 54
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.73 E-value=0.00022 Score=45.71 Aligned_cols=50 Identities=24% Similarity=0.586 Sum_probs=39.8
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLG 117 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~ 117 (124)
+.+++.|| +++. ...+.+.|.+..+++...+.|.|+|.||+++.+.+.+.
T Consensus 10 ~~~l~~n~------~~~~-----------~~~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~ 59 (111)
T smart00387 10 LSNLLDNA------IKYT-----------PEGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFE 59 (111)
T ss_pred HHHHHHHH------HhcC-----------CCCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhc
Confidence 45578888 5654 23578899999888999999999999999999866554
No 55
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=97.70 E-value=0.00018 Score=52.62 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=41.4
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHh
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKS 114 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~ 114 (124)
+.+.|++.|| +++..-. ..++.+.|.+...++.+.+.|+|+|+||+++.+..
T Consensus 45 lav~Ea~~Na------i~Hg~~~--------~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~ 96 (161)
T PRK04069 45 IAVSEACTNA------VQHAYKE--------DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKS 96 (161)
T ss_pred HHHHHHHHHH------HHhccCC--------CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhcc
Confidence 4578899999 7776311 23578899998889999999999999999887744
No 56
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.69 E-value=9.3e-05 Score=65.49 Aligned_cols=49 Identities=20% Similarity=0.504 Sum_probs=33.8
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEE--cC---CceEEEEEEcCCCCCHHHHHhhc
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRIST--DK---QNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~--~~---~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
++.| |+.|| +||+ ..|.+.|.+.. .. ..+.|+|.|||+||+++++.+.|
T Consensus 412 vl~N-Ll~NA------ik~~------------~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 465 (919)
T PRK11107 412 IITN-LVGNA------IKFT------------ESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLF 465 (919)
T ss_pred HHHH-HHHHH------hhcC------------CCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHh
Confidence 4444 99999 7886 23455555542 22 25889999999999999994433
No 57
>PRK10337 sensor protein QseC; Provisional
Probab=97.68 E-value=0.00015 Score=59.26 Aligned_cols=45 Identities=29% Similarity=0.539 Sum_probs=34.7
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
+++|+.|| +||. +.++.+.|.+... .|+|.|||+|||++++++.|
T Consensus 357 l~Nli~NA------~k~~-----------~~~~~i~i~~~~~----~i~i~D~G~Gi~~~~~~~if 401 (449)
T PRK10337 357 VRNLLDNA------IRYS-----------PQGSVVDVTLNAR----NFTVRDNGPGVTPEALARIG 401 (449)
T ss_pred HHHHHHHH------HhhC-----------CCCCeEEEEEEee----EEEEEECCCCCCHHHHHHhc
Confidence 55688898 8886 4567777776543 69999999999999995544
No 58
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.62 E-value=0.00039 Score=43.81 Aligned_cols=50 Identities=24% Similarity=0.514 Sum_probs=38.8
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
+.+++.|| +++.. ...+.+.|.+..+++.+.+.|.|+|.||++..+.+.+
T Consensus 5 ~~~ll~Na------~~~~~----------~~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~ 54 (103)
T cd00075 5 LLNLLSNA------IKHTP----------EGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIF 54 (103)
T ss_pred HHHHHHHH------HHhCc----------CCCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHh
Confidence 45699999 55541 1146788888888889999999999999999886544
No 59
>PRK10547 chemotaxis protein CheA; Provisional
Probab=97.62 E-value=0.00017 Score=63.96 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=30.5
Q ss_pred CCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHH
Q psy15895 80 HDHGKLEIRISTDKQNRILTIQDSGIGMTKEELK 113 (124)
Q Consensus 80 ~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~ 113 (124)
+..|.|+|++...++.+.|+|.|+|.||+++.+.
T Consensus 414 p~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~ 447 (670)
T PRK10547 414 NSVGNLILSAEHQGGNICIEVTDDGAGLNRERIL 447 (670)
T ss_pred CCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHH
Confidence 5678899999999999999999999999998764
No 60
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=97.58 E-value=0.00011 Score=62.50 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=35.6
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
+.|++.|| +||. ..+.+.|++..+++.+.++|+|||+||++++.
T Consensus 415 l~nlL~NA------iKha------------~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~~~ 458 (495)
T PRK11644 415 CQEGLNNI------VKHA------------DASAVTLQGWQQDERLMLVIEDDGSGLPPGSG 458 (495)
T ss_pred HHHHHHHH------HHhC------------CCCEEEEEEEEcCCEEEEEEEECCCCCCcCCC
Confidence 34577777 7876 24578888888888999999999999998754
No 61
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=97.57 E-value=0.00024 Score=59.81 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhh
Q psy15895 45 SDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSN 115 (124)
Q Consensus 45 ~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~ 115 (124)
.++...+.-|+.||. .+.... + .+++.|.|.+...++.+.++|+|||+||+++.....
T Consensus 349 ~~p~l~lqpLvENAi------~hgi~~--~-----~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~ 406 (456)
T COG2972 349 IDPKLVLQPLVENAI------EHGIEP--K-----RPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGL 406 (456)
T ss_pred cCchHHHhHHHHHHH------HHhccc--C-----CCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHH
Confidence 445666777999994 443211 1 468899999998899999999999999999877443
No 62
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=97.55 E-value=0.00023 Score=62.73 Aligned_cols=64 Identities=17% Similarity=0.305 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 47 KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 47 ~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
.|+|-| |+.||.+|+.+..... .+.+.++++....++.+++.|.|||.|.|.+.. .++.+|.-+
T Consensus 602 ~Qvf~N-liKNA~EAi~~~~~~e----------~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r-~r~~EPYvT 665 (712)
T COG5000 602 GQVFGN-LLKNAAEAIEAVEAEE----------RRTALIRVSLDDADGRIVVDVIDNGKGFPRENR-HRALEPYVT 665 (712)
T ss_pred HHHHHH-HHHhHHHHhhhccccc----------CCcceEEEEEecCCCeEEEEEecCCCCCChHHh-hhhccCcee
Confidence 367767 9999999997643221 234456666667778899999999999999999 777777644
No 63
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=97.51 E-value=0.00019 Score=61.23 Aligned_cols=43 Identities=26% Similarity=0.499 Sum_probs=35.2
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
++|++.|| +||. ..+.+.|.+..+++.+.|+|.|||+||+++.
T Consensus 474 l~ell~NA------~kha------------~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~~ 516 (569)
T PRK10600 474 AREALSNA------LKHA------------QASEVVVTVAQNQNQVKLSVQDNGCGVPENA 516 (569)
T ss_pred HHHHHHHH------HHhC------------CCCeEEEEEEEcCCEEEEEEEECCCCCCccc
Confidence 56677887 7886 2357888888888899999999999999864
No 64
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=97.49 E-value=0.00012 Score=60.13 Aligned_cols=67 Identities=27% Similarity=0.376 Sum_probs=46.0
Q ss_pred hhcCcH----HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEE------cC----CceEEEEEEcCCCC
Q psy15895 42 SLYSDK----EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRIST------DK----QNRILTIQDSGIGM 107 (124)
Q Consensus 42 ~~y~~~----~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~------~~----~~~~I~I~DnGiGM 107 (124)
+++.|+ |+|+| |+.||..|+.-.- +.+|+|.+++.. .+ =...|.|.|||.|+
T Consensus 234 ~v~~d~DqliQv~LN-lVrNAaqA~~~~~-------------~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGV 299 (363)
T COG3852 234 EVLGDRDQLIQVFLN-LVRNAAQALGGRA-------------DEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGV 299 (363)
T ss_pred cccCCHHHHHHHHHH-HHHHHHHHhcCCC-------------CCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCC
Confidence 456664 68999 9999987774310 245777666632 11 12567899999999
Q ss_pred CHHHHHhhccccccCC
Q psy15895 108 TKEELKSNLGTIARSG 123 (124)
Q Consensus 108 ~~e~l~~~l~~i~~S~ 123 (124)
|++-. ..++.+.-||
T Consensus 300 P~~L~-~~lF~P~Vs~ 314 (363)
T COG3852 300 PPDLQ-DHLFYPMVSG 314 (363)
T ss_pred ChHHh-hhcccccccc
Confidence 99888 7777776665
No 65
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=97.48 E-value=8.7e-05 Score=65.38 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=36.1
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHh
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKS 114 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~ 114 (124)
.+.|||.||+|++.. .....|.|.+..++ .|+|.|||.|||.+..+.
T Consensus 41 lv~EivdNaiDe~~a---------------g~a~~I~V~i~~dg---~I~V~DnGrGIP~~~~~~ 87 (631)
T PRK05559 41 LVQEVIDNSVDEALA---------------GHGKRIEVTLHADG---SVSVRDNGRGIPVGIHPE 87 (631)
T ss_pred hhhhhhccccchhhc---------------CCCCEEEEEEeCCC---cEEEEEcCCCCCcccccc
Confidence 467899999888743 12456777776553 899999999999998866
No 66
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=97.44 E-value=0.0004 Score=63.76 Aligned_cols=52 Identities=37% Similarity=0.492 Sum_probs=34.8
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEE---cC--CceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRIST---DK--QNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~---~~--~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
|+.| |+.|| +||.. .|.+.|.+.. ++ ..+.|+|.|||+||+++++ ++++++.
T Consensus 832 vl~N-Ll~NA------ik~~~------------~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~-~~iF~~f 888 (1197)
T PRK09959 832 VLSN-LLSNA------LKFTT------------EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQ-QQLFKRY 888 (1197)
T ss_pred HHHH-HHHHH------HHhCC------------CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHH-HHhhccc
Confidence 4445 99999 78762 3444554431 22 2477999999999999999 5555544
No 67
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=97.38 E-value=0.00083 Score=49.16 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=41.5
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHh
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKS 114 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~ 114 (124)
+.+.|++.|| ++|..-. ..++.+.|.+...++.+.+.|.|+|.|++.+.+..
T Consensus 45 lav~Ea~~Na------i~ha~~~--------~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~ 96 (159)
T TIGR01924 45 IAVSEACTNA------VKHAYKE--------GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQ 96 (159)
T ss_pred HHHHHHHHHH------HHhccCC--------CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhcc
Confidence 4578899999 7776311 24578999999999999999999999999887643
No 68
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=97.32 E-value=0.0011 Score=46.35 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=35.6
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTK 109 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~ 109 (124)
..+.|++.|| +++..- . +.++.+.|.+...++.+.++|.|+|.||+.
T Consensus 42 ~~l~eli~Na------i~h~~~---~-----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~~ 88 (137)
T TIGR01925 42 TAVSEAVTNA------IIHGYE---E-----NCEGVVYISATIEDHEVYITVRDEGIGIEN 88 (137)
T ss_pred HHHHHHHHHH------HHhccC---C-----CCCcEEEEEEEEeCCEEEEEEEEcCCCcCc
Confidence 3456788998 565311 0 235789999988889999999999999983
No 69
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=97.28 E-value=0.00036 Score=61.68 Aligned_cols=52 Identities=23% Similarity=0.519 Sum_probs=43.0
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
+||.| |++|| +||.. ++.+.|.|.+...++.+++.|.|||+|+++..+.+-|
T Consensus 639 qv~~N-Li~Na------ik~~~----------~e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF 690 (750)
T COG4251 639 QVFQN-LIANA------IKFGG----------PENPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIF 690 (750)
T ss_pred HHHHH-HHhhh------eecCC----------CCCCceEEeeeccCCceEEEecCCCCCcCHHHHHHHH
Confidence 56677 99999 88874 3458888888889999999999999999999994433
No 70
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.27 E-value=0.00049 Score=61.60 Aligned_cols=54 Identities=20% Similarity=0.398 Sum_probs=40.3
Q ss_pred HHHHHhhHHHHH---HHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHH
Q psy15895 51 IRELISNASDAL---EKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELK 113 (124)
Q Consensus 51 l~eLl~NA~dA~---~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~ 113 (124)
+| ||.||.|-= .+.|.. .+| ++.|.|+++.+..++++.|+|+|.|-||+.+.+.
T Consensus 438 ~H-LvRNAvDHGIE~pE~R~a---~GK-----p~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~ 494 (716)
T COG0643 438 TH-LVRNAVDHGIETPEERRA---AGK-----PEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIR 494 (716)
T ss_pred HH-HHhcchhccCCCHHHHHH---cCC-----CCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHH
Confidence 56 889997752 122222 133 6789999999999999999999999999655543
No 71
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=97.21 E-value=0.00064 Score=57.10 Aligned_cols=43 Identities=23% Similarity=0.425 Sum_probs=33.7
Q ss_pred HHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHHHH
Q psy15895 52 RELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 52 ~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e~l 112 (124)
.+++.|| +||. ..+.+.|.+... ++.+.|+|.|||+|||++..
T Consensus 477 ~nll~NA------~k~~------------~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~ 520 (565)
T PRK10935 477 REATLNA------IKHA------------NASEIAVSCVTNPDGEHTVSIRDDGIGIGELKE 520 (565)
T ss_pred HHHHHHH------HhcC------------CCCeEEEEEEEcCCCEEEEEEEECCcCcCCCCC
Confidence 4488888 7775 346788888766 67899999999999998654
No 72
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.18 E-value=0.0026 Score=43.64 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=41.9
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhh
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSN 115 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~ 115 (124)
+.+.|++.|| +++.... ...+.+.|++..+++.+.|.|.|+|.|.+.......
T Consensus 34 lav~E~~~Na------v~H~~~~--------~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~ 86 (125)
T PF13581_consen 34 LAVSEALTNA------VEHGYPG--------DPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQP 86 (125)
T ss_pred HHHHHHHHHH------HHHcCCC--------CCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCc
Confidence 4478999999 7887421 124778888889999999999999999999876443
No 73
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=97.08 E-value=0.0011 Score=57.66 Aligned_cols=42 Identities=26% Similarity=0.596 Sum_probs=35.6
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e 110 (124)
+||-+.|| +|.+ ...+++|.+...++.+.++|+|||||+++.
T Consensus 486 vREAlsNa------~KHa------------~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 486 VREALSNA------IKHA------------QASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHH------HHhc------------ccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 56767777 8876 356889999988899999999999999986
No 74
>PRK03660 anti-sigma F factor; Provisional
Probab=97.06 E-value=0.0029 Score=44.50 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=34.6
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCH
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTK 109 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~ 109 (124)
.+.|++.|| +++.... ..++.+.|.+...++.+.++|.|+|.||++
T Consensus 43 ~l~eli~Na------i~h~~~~--------~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 43 AVSEAVTNA------IIHGYEN--------NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHH------HHHhcCC--------CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 356788888 5553210 123678898888888999999999999986
No 75
>PRK13559 hypothetical protein; Provisional
Probab=96.99 E-value=0.00088 Score=53.24 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=37.0
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEE--EEcCCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRI--STDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i--~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
++||+.|| +||.... +.+|.++|.+ ...++.+.+.+.|+|.|++++..
T Consensus 272 l~nLi~NA------~k~~~~~--------~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~~~ 321 (361)
T PRK13559 272 LHELAVNA------IKHGALS--------ADQGRISISWKPSPEGAGFRIDWQEQGGPTPPKLA 321 (361)
T ss_pred HHHHHHhH------HHhcccc--------CCCcEEEEEEEecCCCCeEEEEEECCCCCCCCCCC
Confidence 55699999 8885321 4578899988 55677899999999999987643
No 76
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.94 E-value=0.0014 Score=53.07 Aligned_cols=44 Identities=18% Similarity=0.436 Sum_probs=37.7
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
++|-+.|+ +|++ ....+.|++...++.++++|+|||.|.+.+..
T Consensus 284 vQEaltN~------~rHa------------~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 284 VQEALTNA------IRHA------------QATEVRVTLERTDDELRLEVIDNGVGFDPDKE 327 (365)
T ss_pred HHHHHHHH------Hhcc------------CCceEEEEEEEcCCEEEEEEEECCcCCCcccc
Confidence 56777888 8886 34678999999999999999999999998876
No 77
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=96.90 E-value=0.0027 Score=54.90 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=58.4
Q ss_pred ccccceeEehhhhhhhHHHHhh--------------------hhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCC
Q psy15895 20 NDNAEKHEFQAETRMLLDIVAK--------------------SLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTD 79 (124)
Q Consensus 20 ~~~~e~~~f~~ei~~~l~ll~~--------------------~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam 79 (124)
++...+.++...+.+...++.. +-.+-.+|++| ++-||.|||..
T Consensus 519 ~~~lqpV~L~~~v~~AweLl~~khk~rQ~~Li~ptD~~~V~gd~v~ieQVlvN-l~~NaldA~~h--------------- 582 (673)
T COG4192 519 DESLQPVRLNSVVEQAWELLQTKHKRRQIKLINPTDDLMVMGDAVSIEQVLVN-LIVNALDASTH--------------- 582 (673)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhhccccccCCcccceecchhhhHHHHHHH-HHHHHHhhhcc---------------
Confidence 3445666777666666666542 00111467888 99999999864
Q ss_pred CCCCeEEEEEEE-cCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 80 HDHGKLEIRIST-DKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 80 ~~~g~i~I~i~~-~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
..+.|++.... +.+...|.|.|||.|-|.+-+ ..|.+|..|
T Consensus 583 -~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~-dkLl~PFtt 624 (673)
T COG4192 583 -FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELV-DKLLTPFTT 624 (673)
T ss_pred -CCceEEEEeecCcccceEEEEecCCCCCchhHH-HHhcCCccc
Confidence 23677877765 556799999999999999999 455555443
No 78
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=96.81 E-value=0.00087 Score=58.72 Aligned_cols=44 Identities=23% Similarity=0.423 Sum_probs=31.6
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
+.|||.||+|+... .....|.|.+..++ .|+|.|||.|||.+..
T Consensus 6 v~ElvdNAiD~~~~---------------g~at~I~V~i~~~g---~I~V~DnG~GIp~~~h 49 (594)
T smart00433 6 VDEIVDNAADEALA---------------GYMDTIKVTIDKDN---SISVEDNGRGIPVEIH 49 (594)
T ss_pred Eeeehhcccchhcc---------------CCCCEEEEEEeCCC---eEEEEEeCCceeCCcc
Confidence 34799999888743 12456677766543 9999999999996543
No 79
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=96.62 E-value=0.0012 Score=58.29 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=30.8
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHH
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e 110 (124)
.+.|||.||+|.... .....|.|.+..++ .|+|+|||.|||.+
T Consensus 41 ~v~ElvdNaiDe~~a---------------g~a~~I~V~i~~~g---~I~V~DnG~GIp~~ 83 (638)
T PRK05644 41 LVYEIVDNSIDEALA---------------GYCDHIEVTINEDG---SITVTDNGRGIPVD 83 (638)
T ss_pred hhHHhhhcccccccC---------------CCCCEEEEEEeCCC---cEEEEEeCccccCC
Confidence 467899999764321 12356777776543 89999999999986
No 80
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=96.45 E-value=0.003 Score=55.74 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=31.1
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
-.+.|||.||+|-... .....|.|.+.. + ..|+|.|||.|||.+.
T Consensus 33 ~lv~ElvdNsiDE~~a---------------g~a~~I~V~i~~--d-~~I~V~DnGrGIp~~~ 77 (625)
T TIGR01055 33 HLVQEVIDNSVDEALA---------------GFASIIMVILHQ--D-QSIEVFDNGRGMPVDI 77 (625)
T ss_pred eeehhhhhcccchhhc---------------CCCCEEEEEEeC--C-CeEEEEecCCccCccc
Confidence 3467899999662221 123456666643 3 6899999999999887
No 81
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=96.39 E-value=0.0026 Score=56.36 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=30.1
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHH
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e 110 (124)
.+.|||.||+|-... .....|.|.+..++ .|+|+|||.|||.+
T Consensus 34 vv~Elv~NaiDe~~a---------------g~a~~I~V~i~~~g---~I~V~DnG~GIp~~ 76 (654)
T TIGR01059 34 LVYEVVDNSIDEAMA---------------GYCDTINVTINDDG---SVTVEDNGRGIPVD 76 (654)
T ss_pred hhHHhhhcccccccc---------------CCCCEEEEEEeCCC---cEEEEEeCCCcCcc
Confidence 466899999663321 12456777776433 39999999999986
No 82
>KOG0787|consensus
Probab=96.21 E-value=0.014 Score=48.96 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=48.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccCC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S~ 123 (124)
+-||+.||+.|.-+..-.. +.+-+.|+|.+...+....|.|+|-|=|++..++ ++++....|.
T Consensus 265 lfElfKNamrATve~h~~~---------~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~-drlf~Y~yST 327 (414)
T KOG0787|consen 265 LFELFKNAMRATVEHHGDD---------GDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDI-DRLFSYMYST 327 (414)
T ss_pred HHHHHHHHHHHHHHHhccC---------CCCCCCeEEEEecCCcceEEEEecCCCCcChhHH-HHHHhhhccc
Confidence 4579999999985422111 1235679999999999999999999999999999 7777766664
No 83
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.06 E-value=0.031 Score=40.75 Aligned_cols=48 Identities=23% Similarity=0.397 Sum_probs=37.0
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTK 109 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~ 109 (124)
+.+-|++.|+ +++.--.. ++.|.|.|....+++...++|+|.|.|+..
T Consensus 43 ~av~E~~~N~------v~Ha~~~~-------~~~g~I~i~~~~~~~~~~i~i~D~G~~~~~ 90 (146)
T COG2172 43 IAVSEALTNA------VKHAYKLD-------PSEGEIRIEVSLDDGKLEIRIWDQGPGIED 90 (146)
T ss_pred HHHHHHHHHH------HHHHhhcC-------CCCceEEEEEEEcCCeEEEEEEeCCCCCCC
Confidence 3466788898 66653221 345899999999999999999999988754
No 84
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=95.71 E-value=0.0072 Score=54.55 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=29.6
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHH
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e 110 (124)
.+.|++.||+|-... .....|.|.+..++ .|+|+|||.|||.+
T Consensus 41 lv~EivdNaiDE~~A---------------G~a~~I~V~i~~dg---sIsV~DnGrGIPvd 83 (756)
T PRK14939 41 MVYEVVDNAIDEALA---------------GHCDDITVTIHADG---SVSVSDNGRGIPTD 83 (756)
T ss_pred hhhHhhccccccccc---------------CCCCEEEEEEcCCC---eEEEEEcCCcccCC
Confidence 356799999652211 11356677766543 89999999999987
No 85
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=95.22 E-value=0.081 Score=45.90 Aligned_cols=74 Identities=16% Similarity=0.318 Sum_probs=54.3
Q ss_pred cceeEehhhhhhhHHHHh--hhhcCcH-----------------HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCC
Q psy15895 23 AEKHEFQAETRMLLDIVA--KSLYSDK-----------------EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHG 83 (124)
Q Consensus 23 ~e~~~f~~ei~~~l~ll~--~~~y~~~-----------------~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g 83 (124)
.+.+.+..|++++...+. +.-+.++ ...+.-|+.|| +|+...+. .+.+
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~~iP~filQPLVENA------IKHG~~~~-------~~~g 480 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQVQIPSFILQPLVENA------IKHGISQL-------KDTG 480 (557)
T ss_pred ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhhccCchhhhhHHHHHH------HHhcccch-------hcCC
Confidence 467778888888776653 3334332 12345588999 77764331 4678
Q ss_pred eEEEEEEEcCCceEEEEEEcCCCCCH
Q psy15895 84 KLEIRISTDKQNRILTIQDSGIGMTK 109 (124)
Q Consensus 84 ~i~I~i~~~~~~~~I~I~DnGiGM~~ 109 (124)
.++|.+..+++.+.+.|+|||-|+++
T Consensus 481 ~V~I~V~~~d~~l~i~VeDng~li~p 506 (557)
T COG3275 481 RVTISVEKEDADLRIEVEDNGGLIQP 506 (557)
T ss_pred ceEEEEEEeCCeEEEEEecCCCCcCC
Confidence 99999999999999999999999988
No 86
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=94.63 E-value=0.062 Score=45.47 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=26.1
Q ss_pred CCeEEEEEEEcCCceEEEEEEcCCCCCHH
Q psy15895 82 HGKLEIRISTDKQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 82 ~g~i~I~i~~~~~~~~I~I~DnGiGM~~e 110 (124)
...++|.+..++..+.++|+|||.|+|..
T Consensus 428 AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 428 ASAVTIQLWQQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred cceEEEEEeeCCcEEEEEEecCCcCCCCC
Confidence 45789999999999999999999999976
No 87
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=94.41 E-value=0.051 Score=48.25 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=29.1
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e 110 (124)
+.|+|.||+|-... .....|.|.+..+ -.|+|.|||-|||.+
T Consensus 39 v~EIvdNavDE~~a---------------g~~~~I~V~i~~d---gsitV~DnGrGIPv~ 80 (637)
T TIGR01058 39 VWEIVDNSVDEVLA---------------GYADNITVTLHKD---NSITVQDDGRGIPTG 80 (637)
T ss_pred hhhhhcchhhhhhc---------------CCCcEEEEEEcCC---CeEEEEECCCcccCc
Confidence 55799999664322 2245666666533 389999999999974
No 88
>KOG1978|consensus
Probab=93.47 E-value=0.083 Score=47.11 Aligned_cols=50 Identities=20% Similarity=0.426 Sum_probs=33.4
Q ss_pred hcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 43 LYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 43 ~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
+-.+....++||+.|++||=. ..|.|.+. +-+--.|+|+|||+||++.+.
T Consensus 17 vI~sl~sAVKELvENSiDAGA-------------------T~I~I~~k-dyG~d~IEV~DNG~GI~~~n~ 66 (672)
T KOG1978|consen 17 VITSLVSAVKELVENSIDAGA-------------------TAIDIKVK-DYGSDSIEVSDNGSGISATDF 66 (672)
T ss_pred eeccHHHHHHHHHhcCcccCC-------------------ceeeEecC-CCCcceEEEecCCCCCCccch
Confidence 333444668899999954321 22333332 336789999999999998766
No 89
>KOG1977|consensus
Probab=93.40 E-value=0.083 Score=48.03 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=25.3
Q ss_pred EEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 86 EIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 86 ~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
.|.+..+-....+.|.|+|.||..+++ +.||+=
T Consensus 40 ~V~v~V~~~t~sv~ViDdG~G~~rdDl-~~lg~r 72 (1142)
T KOG1977|consen 40 CVAVRVNMETFSVQVIDDGFGMGRDDL-EKLGNR 72 (1142)
T ss_pred EEEEEecCceeEEEEEecCCCccHHHH-HHHHhh
Confidence 455555556788899999999999999 666653
No 90
>PF14501 HATPase_c_5: GHKL domain
Probab=92.57 E-value=0.68 Score=30.71 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=30.0
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGI 105 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGi 105 (124)
+-+|++||++|+.+. +..+.|.|.+...++.+.|.|+..-.
T Consensus 10 l~nlldNAiea~~~~--------------~~~~~I~i~~~~~~~~~~i~i~N~~~ 50 (100)
T PF14501_consen 10 LGNLLDNAIEACKKY--------------EDKRFISISIREENGFLVIIIENSCE 50 (100)
T ss_pred HHHHHHHHHHHHHhc--------------CCCcEEEEEEEecCCEEEEEEEECCC
Confidence 334999998887551 12677888888888888888886643
No 91
>PLN03128 DNA topoisomerase 2; Provisional
Probab=92.10 E-value=0.3 Score=46.17 Aligned_cols=45 Identities=20% Similarity=0.385 Sum_probs=29.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
+-|+|.||.|-...- +....|.|.+. .+.-.|+|.|||-|||-+.
T Consensus 57 ~dEIldNAvDe~~~~--------------g~~~~I~V~i~--~~dgsIsV~DnGrGIPv~i 101 (1135)
T PLN03128 57 FDEILVNAADNKQRD--------------PSMDSLKVDID--VEQNTISVYNNGKGIPVEI 101 (1135)
T ss_pred HHHHHHHHHHHhhhc--------------CCCcEEEEEEE--cCCCeEEEEecCccccCCC
Confidence 456999997654210 22344555554 4445899999999999753
No 92
>PLN03237 DNA topoisomerase 2; Provisional
Probab=91.83 E-value=0.29 Score=47.27 Aligned_cols=45 Identities=20% Similarity=0.431 Sum_probs=29.9
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
+.|+|.||.|-... . +....|+|.+.. +...|+|.|||-|||-+.
T Consensus 82 fdEIldNAvDe~~r---~-----------g~~~~I~V~I~~--~~gsIsV~DnGRGIPV~i 126 (1465)
T PLN03237 82 FDEILVNAADNKQR---D-----------PKMDSLRVVIDV--EQNLISVYNNGDGVPVEI 126 (1465)
T ss_pred HHHHhhhhHhHHhh---c-----------CCCCEEEEEEEc--CCCEEEEEecCccccCCC
Confidence 56799999765421 0 223455555554 445799999999999753
No 93
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=91.53 E-value=0.31 Score=46.91 Aligned_cols=48 Identities=23% Similarity=0.381 Sum_probs=29.7
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
+-|+|.||.|-.. +-. .. +....|+|.+ +.+.-.|+|.|||-|||-+.
T Consensus 62 ~dEIldNAvDe~~--r~~-----~~----g~~~~I~V~i--~~d~g~IsV~dnGrGIPv~~ 109 (1388)
T PTZ00108 62 FDEILVNAADNKA--RDK-----GG----HRMTYIKVTI--DEENGEISVYNDGEGIPVQI 109 (1388)
T ss_pred HHHHhhhhhhhhc--ccC-----CC----CCccEEEEEE--eccCCeEEEEecCCcccCCC
Confidence 4569999976542 110 00 1234455555 44555799999999999754
No 94
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=91.15 E-value=0.32 Score=43.05 Aligned_cols=46 Identities=26% Similarity=0.460 Sum_probs=28.4
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
+.|+|.||.|-... . +. .....|.|.+. .-.|+|.|||-|||-+.-
T Consensus 50 ~~EIldNavDe~~~---~----~~-----g~~~~I~V~i~----dgsisV~dnGrGIPv~~h 95 (602)
T PHA02569 50 IDEIIDNSVDEAIR---T----NF-----KFANKIDVTIK----NNQVTVSDNGRGIPQAMV 95 (602)
T ss_pred eehhhhhhhhhhhc---c----CC-----CCCcEEEEEEc----CCEEEEEECCCcccCCcc
Confidence 34699999764321 0 00 01344555554 457999999999997654
No 95
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.43 E-value=0.87 Score=38.35 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=29.3
Q ss_pred CCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 82 HGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 82 ~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
..++.|.....++.+++.|.|||.|.+.+......
T Consensus 377 Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~~~~ 411 (459)
T COG4564 377 ATRVTILLQQMGDMVQLMVRDNGVGFSVKEALQKR 411 (459)
T ss_pred CeEEEEEeccCCcceEEEEecCCCCccchhhccCc
Confidence 45788888889999999999999999987775444
No 96
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=90.41 E-value=0.14 Score=47.21 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=20.2
Q ss_pred CCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 82 HGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 82 ~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
...|.|.+..+ -.|+|+|||-|||-+.-
T Consensus 150 ~~~I~V~i~~D---gsItV~DnGRGIPvd~h 177 (903)
T PTZ00109 150 CNKITVVLHKD---GSVEISDNGRGIPCDVS 177 (903)
T ss_pred CcEEEEEEcCC---CeEEEEeCCcccccccc
Confidence 45566666442 47999999999997543
No 97
>KOG1979|consensus
Probab=89.92 E-value=0.55 Score=41.76 Aligned_cols=28 Identities=32% Similarity=0.596 Sum_probs=22.0
Q ss_pred EEEEE-EcCCceEEEEEEcCCCCCHHHHH
Q psy15895 86 EIRIS-TDKQNRILTIQDSGIGMTKEELK 113 (124)
Q Consensus 86 ~I~i~-~~~~~~~I~I~DnGiGM~~e~l~ 113 (124)
.|.+. .+++-..+.|+|||-||-+++++
T Consensus 46 ~I~V~vk~GGLKLlQisDnG~GI~reDl~ 74 (694)
T KOG1979|consen 46 SIDVLVKDGGLKLLQISDNGSGIRREDLP 74 (694)
T ss_pred eEEEEEecCCeEEEEEecCCCccchhhhH
Confidence 44554 46667888899999999999984
No 98
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=89.58 E-value=0.34 Score=43.12 Aligned_cols=42 Identities=14% Similarity=0.375 Sum_probs=28.5
Q ss_pred HHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 52 RELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 52 ~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
-|+++||+|-.-. .-...|.|.+. ..-.|+|.|||=|||-+.
T Consensus 42 ~EVvDNsiDEala---------------G~~~~I~V~l~---~d~sisV~DnGRGIPvdi 83 (635)
T COG0187 42 WEVVDNSIDEALA---------------GYADRIDVTLH---EDGSISVEDNGRGIPVDI 83 (635)
T ss_pred eEeeechHhHHhh---------------CcCcEEEEEEc---CCCeEEEEECCCCCcccc
Confidence 3588999654322 12345666665 456899999999999766
No 99
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.94 E-value=3.9 Score=30.65 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=36.9
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
..||||.|| +||. ..|+|.|+.+.......+.+..--.+-+..+.++.|
T Consensus 67 l~NELiENA------VKfr------------a~geIvieasl~s~~f~~kvsN~vd~~t~~~f~~ll 115 (184)
T COG5381 67 LANELIENA------VKFR------------ATGEIVIEASLYSHKFIFKVSNIVDLPTTIDFENLL 115 (184)
T ss_pred HHHHHHHhh------hccc------------CCCcEEEEEEeccceEEEEecccCCCccHHHHHHHH
Confidence 368999999 8885 467999999988888887777666666666664444
No 100
>KOG0355|consensus
Probab=67.43 E-value=6.5 Score=36.25 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=21.3
Q ss_pred EEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 86 EIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 86 ~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
.|.+..+.....|+|.+||-|||-+..
T Consensus 76 ~i~v~i~~e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 76 TIKVTIDKEKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred eeEEEEccCCCEEEEEeCCCcceeeec
Confidence 555666777889999999999986554
No 101
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=65.35 E-value=3.4 Score=25.79 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=15.4
Q ss_pred CCCCHHHHHhhccccccCC
Q psy15895 105 IGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 105 iGM~~e~l~~~l~~i~~S~ 123 (124)
.||+++++...||+|..++
T Consensus 14 ~GmTk~qV~~lLG~P~~~~ 32 (71)
T PF04355_consen 14 PGMTKDQVRALLGSPSLRD 32 (71)
T ss_dssp TTSBHHHHHHHHTS-SEE-
T ss_pred CCCCHHHHHHhcCCCCccc
Confidence 6899999999999997653
No 102
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=59.59 E-value=7.9 Score=21.13 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=10.4
Q ss_pred CCceEEEEEEcCCC
Q psy15895 93 KQNRILTIQDSGIG 106 (124)
Q Consensus 93 ~~~~~I~I~DnGiG 106 (124)
+++..|+|.|+|+-
T Consensus 11 Dgn~qITIeD~GPK 24 (30)
T PF07492_consen 11 DGNFQITIEDTGPK 24 (30)
T ss_pred CCCcEEEEecCCCe
Confidence 35678888898863
No 103
>KOG3938|consensus
Probab=53.60 E-value=13 Score=30.33 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=20.4
Q ss_pred eEEEEEEEcCCceEEEEEEcCCCC
Q psy15895 84 KLEIRISTDKQNRILTIQDSGIGM 107 (124)
Q Consensus 84 ~i~I~i~~~~~~~~I~I~DnGiGM 107 (124)
.=.+++..+.+..=++|+|||.|=
T Consensus 127 ~kEv~v~KsedalGlTITDNG~Gy 150 (334)
T KOG3938|consen 127 AKEVEVVKSEDALGLTITDNGAGY 150 (334)
T ss_pred ceeEEEEecccccceEEeeCCcce
Confidence 346788888899999999999994
No 104
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=51.12 E-value=11 Score=26.28 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.4
Q ss_pred CCCCCHHHHHhhccccccCC
Q psy15895 104 GIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 104 GiGM~~e~l~~~l~~i~~S~ 123 (124)
=+||+++++...||+|..++
T Consensus 37 ~~GmTr~qV~~~lGtP~~~~ 56 (109)
T PRK11251 37 KKGMTRQQVAQIAGKPSSEV 56 (109)
T ss_pred CCCCCHHHHHHHcCCCCccc
Confidence 38999999999999998664
No 105
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=39.77 E-value=1.1e+02 Score=20.35 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=24.3
Q ss_pred CCeEEEEEEEcCCceEEEEEEcCCC-----CCHHHHHh
Q psy15895 82 HGKLEIRISTDKQNRILTIQDSGIG-----MTKEELKS 114 (124)
Q Consensus 82 ~g~i~I~i~~~~~~~~I~I~DnGiG-----M~~e~l~~ 114 (124)
+..+++.+..+.+.+++.|.|...| ||++++.+
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVIRqIP~Ee~l~ 91 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVIRQIPPEELLD 91 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEEEEE-HHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEEEeCCcHHHHH
Confidence 4568999999999999999999987 57776643
No 106
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=38.19 E-value=24 Score=24.34 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=16.3
Q ss_pred CCCCHHHHHhhccccccCC
Q psy15895 105 IGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 105 iGM~~e~l~~~l~~i~~S~ 123 (124)
.||+++++...||+|-.++
T Consensus 48 ~GmTk~qV~~lLGtP~~~~ 66 (113)
T PRK11548 48 VGMTQQQVAYTLGTPMMQD 66 (113)
T ss_pred CCCCHHHHHHHcCCCcccc
Confidence 8999999999999986543
No 107
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=34.72 E-value=15 Score=26.96 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=8.0
Q ss_pred ccCCCCcccc
Q psy15895 3 VQPNFNHHYS 12 (124)
Q Consensus 3 ~~~~~~~~~~ 12 (124)
.-|+|+||+.
T Consensus 59 FcPeF~Hh~E 68 (143)
T cd08683 59 FCPEFNHHVE 68 (143)
T ss_pred cCCCccceEE
Confidence 3599999985
No 108
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=33.34 E-value=1.2e+02 Score=26.46 Aligned_cols=50 Identities=30% Similarity=0.340 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcC---CCCCHHHHHh
Q psy15895 47 KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSG---IGMTKEELKS 114 (124)
Q Consensus 47 ~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnG---iGM~~e~l~~ 114 (124)
|...+||++-|| +-+.... ..+..+.|.++.| +|.|+..| .||+.+++.+
T Consensus 271 P~~alREai~NA------v~HRDYs--------~~~~~v~I~iydD----RieI~NPGgl~~gi~~~~l~~ 323 (467)
T COG2865 271 PLEALREAIINA------VIHRDYS--------IRGRNVHIEIYDD----RIEITNPGGLPPGITPEDLLK 323 (467)
T ss_pred CHHHHHHHHHHH------HHhhccc--------cCCCceEEEEECC----eEEEECCCCCCCCCChhHccc
Confidence 456799999999 3333222 2344788888865 57788866 5788877744
No 109
>cd07461 CRD_FZ8 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 8 (Fz8) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 8 (Fz8) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz8 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=28.50 E-value=54 Score=23.27 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=22.8
Q ss_pred ccCCCCcccccchhhhcccccceeEehhhhhhhHHHHhhhhcCcHHHHH
Q psy15895 3 VQPNFNHHYSTQAEAASNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFI 51 (124)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l 51 (124)
.-||+-.|+ +|.||+. ++.+..+|+....+.+-+.|+
T Consensus 22 ~~PN~l~H~-sq~ea~~-----------~~~~f~pLv~~~Csp~l~~Fl 58 (125)
T cd07461 22 YMPNQFNHD-TQDEAGL-----------EVHQFWPLVEIQCSPDLKFFL 58 (125)
T ss_pred cCCCccCCC-CHHHHHH-----------HHHHHHHHHhCCCChhHHHHh
Confidence 358999996 6877752 556666666544444444443
No 110
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=26.75 E-value=1.2e+02 Score=22.74 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEEEEcCCceEEEEEEcCCCC
Q psy15895 78 TDHDHGKLEIRISTDKQNRILTIQDSGIGM 107 (124)
Q Consensus 78 am~~~g~i~I~i~~~~~~~~I~I~DnGiGM 107 (124)
+||.||.++|.+....+...++|+=+|.-+
T Consensus 100 alprGG~i~V~~~~~~~~~~~~v~a~G~~~ 129 (182)
T PF10090_consen 100 ALPRGGEITVSIEGSEGDGGWRVRAEGPRA 129 (182)
T ss_pred hcCCCCEEEEEEeccCCCceEEEEEecccc
Confidence 568899999998888888888888777654
No 111
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=26.33 E-value=39 Score=18.27 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=7.5
Q ss_pred CCCCHHHHHhhc
Q psy15895 105 IGMTKEELKSNL 116 (124)
Q Consensus 105 iGM~~e~l~~~l 116 (124)
.|++++++.++|
T Consensus 15 ~Gls~eeir~FL 26 (30)
T PF08671_consen 15 SGLSKEEIREFL 26 (30)
T ss_dssp TT--HHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 688888886665
No 112
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=25.45 E-value=1.2e+02 Score=22.13 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.4
Q ss_pred CeEEEEEEEcCCceEEEEEEcCCC
Q psy15895 83 GKLEIRISTDKQNRILTIQDSGIG 106 (124)
Q Consensus 83 g~i~I~i~~~~~~~~I~I~DnGiG 106 (124)
+...|.+....+.++|.|.|.-.|
T Consensus 107 gdf~I~i~~~~g~l~v~I~D~~TG 130 (142)
T PF10614_consen 107 GDFTIEIVNSDGGLVVNITDKNTG 130 (142)
T ss_pred CCEEEEEEeCCCeEEEEEEeCCCc
Confidence 668899998899999999998887
No 113
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=24.46 E-value=1.3e+02 Score=19.53 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=23.5
Q ss_pred EEEEEEcCCceEEEEEEcCC----CCCHHHHHhhc
Q psy15895 86 EIRISTDKQNRILTIQDSGI----GMTKEELKSNL 116 (124)
Q Consensus 86 ~I~i~~~~~~~~I~I~DnGi----GM~~e~l~~~l 116 (124)
-|.++.......+.|.|+|- ++.+|.+.++|
T Consensus 39 lIdaT~GrktrsviitdsghviLSa~~~eTi~~R~ 73 (73)
T PF04025_consen 39 LIDATYGRKTRSVIITDSGHVILSALQPETIAKRF 73 (73)
T ss_pred EEEeeCCCceeEEEEEcCCcEEEeeCCHHHHhhcC
Confidence 57777778889999999995 66777775553
No 114
>COG2913 OlmA Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]
Probab=22.74 E-value=55 Score=24.01 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=15.6
Q ss_pred CCCCHHHHHhhccccccC
Q psy15895 105 IGMTKEELKSNLGTIARS 122 (124)
Q Consensus 105 iGM~~e~l~~~l~~i~~S 122 (124)
.||+++++...||+|--+
T Consensus 51 ~Gmtk~QV~~lLGtP~~~ 68 (147)
T COG2913 51 VGMTKDQVLYLLGTPSLV 68 (147)
T ss_pred CCCCHHHHHHHhCCCeee
Confidence 899999999999988544
No 115
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=20.65 E-value=67 Score=22.28 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=16.3
Q ss_pred CCCCHHHHHhhccccccC
Q psy15895 105 IGMTKEELKSNLGTIARS 122 (124)
Q Consensus 105 iGM~~e~l~~~l~~i~~S 122 (124)
.||+.+++...||++-+|
T Consensus 33 lg~s~~~V~~~lG~pdfs 50 (102)
T PF11399_consen 33 LGMSKDQVIALLGTPDFS 50 (102)
T ss_pred CCCCHHHHHHHhCCCCch
Confidence 799999999999998776
No 116
>PRK10050 curli assembly protein CsgF; Provisional
Probab=20.20 E-value=1.8e+02 Score=21.23 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.1
Q ss_pred CeEEEEEEEcCCceEEEEEEcCCC
Q psy15895 83 GKLEIRISTDKQNRILTIQDSGIG 106 (124)
Q Consensus 83 g~i~I~i~~~~~~~~I~I~DnGiG 106 (124)
+...|.+....+.++|.|.|.-.|
T Consensus 98 gd~~i~i~~~~~~l~i~ItD~~TG 121 (138)
T PRK10050 98 NDYIVDIANRDGQLQLNVTDRKTG 121 (138)
T ss_pred CCEEEEEEecCCcEEEEEEeCCCc
Confidence 557788777788999999998887
Done!