Query psy15895
Match_columns 124
No_of_seqs 126 out of 1276
Neff 6.3
Searched_HMMs 29240
Date Sat Aug 17 00:22:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ied_A Heat shock protein; HSP 99.9 3.6E-25 1.2E-29 174.1 4.6 116 8-124 7-158 (272)
2 3peh_A Endoplasmin homolog; st 99.9 2.4E-24 8.3E-29 170.7 5.3 113 9-124 5-121 (281)
3 3nmq_A Heat shock protein HSP 99.9 1.2E-23 3.9E-28 163.6 5.5 100 22-124 15-114 (239)
4 1qy5_A Endoplasmin; GRP94, NEC 99.9 1.6E-22 5.4E-27 159.3 7.3 100 22-124 4-103 (269)
5 3o0i_A HSP90AA1 protein; HSP90 99.9 1.3E-22 4.5E-27 159.0 5.8 101 20-123 34-134 (256)
6 3t0h_A Heat shock protein HSP 99.8 1.4E-21 4.9E-26 150.6 7.5 101 20-123 6-106 (228)
7 2o1u_A Endoplasmin; GRP94, HSP 99.8 1.3E-21 4.5E-26 169.6 5.8 114 8-124 7-120 (666)
8 2cg9_A ATP-dependent molecular 99.8 6.5E-21 2.2E-25 165.5 9.9 99 23-124 3-101 (677)
9 2gqp_A Endoplasmin; GRP94, HSP 99.8 5.1E-21 1.7E-25 147.7 8.3 100 22-124 8-107 (236)
10 2wer_A ATP-dependent molecular 99.8 3.5E-20 1.2E-24 141.1 7.6 98 23-123 3-100 (220)
11 1y4s_A Chaperone protein HTPG; 99.8 6.5E-20 2.2E-24 156.5 8.4 99 23-124 4-102 (559)
12 2ior_A Chaperone protein HTPG; 99.8 1.3E-19 4.5E-24 139.6 8.8 101 20-123 21-121 (235)
13 1yc1_A HSP 86, heat shock prot 99.8 1.5E-19 5.3E-24 141.8 7.3 99 22-123 44-142 (264)
14 2ioq_A Chaperone protein HTPG; 99.8 1.4E-19 4.9E-24 156.0 7.6 98 24-124 5-102 (624)
15 1ysr_A Sensor-type histidine k 98.7 1.2E-07 4.2E-12 65.2 8.5 51 51-120 51-101 (150)
16 3a0y_A Sensor protein; ATP-LID 98.6 8.8E-08 3E-12 65.5 7.4 52 51-120 52-103 (152)
17 4ew8_A Sensor protein DIVL; si 98.6 2.1E-07 7E-12 69.3 8.4 54 51-122 160-213 (268)
18 3a0r_A Sensor protein; four he 98.6 1.1E-07 3.7E-12 73.0 6.8 54 51-122 249-302 (349)
19 2c2a_A Sensor histidine kinase 98.6 1.6E-07 5.5E-12 70.0 7.4 56 51-121 143-198 (258)
20 3d36_A Sporulation kinase B; G 98.6 2.4E-07 8.1E-12 67.6 8.0 53 51-121 128-180 (244)
21 1i58_A Chemotaxis protein CHEA 98.5 2.5E-07 8.4E-12 66.2 7.4 56 51-112 52-108 (189)
22 1b63_A MUTL; DNA mismatch repa 98.5 1.5E-07 5E-12 75.3 5.9 61 42-122 20-80 (333)
23 1r62_A Nitrogen regulation pro 98.5 1.3E-07 4.5E-12 65.0 4.5 53 51-120 53-115 (160)
24 4fpp_A Phosphotransferase; fou 98.5 5E-07 1.7E-11 68.1 7.9 56 48-122 149-206 (247)
25 2btz_A Pyruvate dehydrogenase 98.5 2.6E-07 9.1E-12 74.1 6.6 60 51-121 236-295 (394)
26 1y8o_A [pyruvate dehydrogenase 98.5 1.6E-07 5.6E-12 76.2 5.4 38 83-121 281-318 (419)
27 2q8g_A [pyruvate dehydrogenase 98.5 2.3E-07 7.8E-12 74.8 6.2 60 51-121 248-307 (407)
28 1id0_A PHOQ histidine kinase; 98.4 5.7E-07 2E-11 61.6 7.0 50 51-120 49-98 (152)
29 1gkz_A [3-methyl-2-oxobutanoat 98.4 1.6E-07 5.5E-12 75.1 4.8 62 51-122 243-304 (388)
30 1bxd_A ENVZ(290-450), protein 98.4 5.3E-07 1.8E-11 62.7 6.4 51 51-121 52-102 (161)
31 2e0a_A Pyruvate dehydrogenase 98.4 2.9E-07 9.8E-12 74.0 5.3 60 51-121 235-294 (394)
32 3ehg_A Sensor kinase (YOCF pro 98.4 4.3E-07 1.5E-11 61.5 5.4 44 51-112 45-88 (128)
33 3sl2_A Sensor histidine kinase 98.4 4.3E-07 1.5E-11 64.2 5.5 53 51-121 48-102 (177)
34 1b3q_A Protein (chemotaxis pro 98.4 1.1E-06 3.7E-11 70.7 7.9 33 80-112 135-167 (379)
35 1th8_A Anti-sigma F factor; SP 98.3 1.3E-06 4.6E-11 60.0 7.1 45 50-108 43-87 (145)
36 3na3_A DNA mismatch repair pro 98.3 1.3E-06 4.3E-11 70.8 7.3 58 44-122 26-83 (348)
37 3ehh_A Sensor kinase (YOCF pro 98.3 1.2E-06 4.2E-11 63.3 6.6 44 51-112 135-178 (218)
38 3jz3_A Sensor protein QSEC; he 98.3 6.6E-07 2.3E-11 64.4 4.0 50 51-122 122-171 (222)
39 3h4l_A DNA mismatch repair pro 98.2 1.7E-06 5.7E-11 70.5 6.7 57 44-121 23-79 (367)
40 3zxq_A Hypoxia sensor histidin 98.2 1.3E-06 4.6E-11 58.2 5.1 42 51-111 44-85 (124)
41 3zxo_A Redox sensor histidine 98.1 1.5E-06 5.2E-11 58.1 3.7 42 51-111 48-89 (129)
42 1h7s_A PMS1 protein homolog 2; 98.1 3.3E-06 1.1E-10 68.5 5.6 56 47-122 35-90 (365)
43 1mu5_A Type II DNA topoisomera 98.1 3.3E-06 1.1E-10 70.6 5.4 52 51-119 37-94 (471)
44 3fv5_A DNA topoisomerase 4 sub 98.0 2.8E-06 9.7E-11 63.7 3.7 47 48-112 19-65 (201)
45 2zbk_B Type 2 DNA topoisomeras 98.0 4.2E-06 1.4E-10 71.0 5.1 52 51-119 36-93 (530)
46 2q2e_B Type 2 DNA topoisomeras 97.9 9.6E-06 3.3E-10 70.0 5.3 53 50-116 41-94 (621)
47 1kij_A DNA gyrase subunit B; t 97.8 8.7E-06 3E-10 66.5 2.3 48 49-114 35-82 (390)
48 1s16_A Topoisomerase IV subuni 97.8 1.4E-05 4.9E-10 65.3 3.6 67 25-111 9-78 (390)
49 1ei1_A DNA gyrase B, GYRB; ATP 97.7 2.3E-05 7.9E-10 64.1 3.6 47 48-112 36-82 (391)
50 4duh_A DNA gyrase subunit B; s 97.6 3.9E-05 1.3E-09 58.3 4.3 46 49-112 38-83 (220)
51 3ttz_A DNA gyrase subunit B; p 97.6 5.3E-05 1.8E-09 56.7 4.7 45 49-111 34-78 (198)
52 3cwv_A DNA gyrase, B subunit, 97.6 5.1E-05 1.7E-09 61.7 4.4 45 50-112 34-78 (369)
53 4emv_A DNA topoisomerase IV, B 97.5 8.3E-05 2.8E-09 56.8 3.8 45 49-111 43-87 (226)
54 1ixm_A SPO0B, protein (sporula 97.4 0.0002 7E-09 53.1 5.5 60 51-122 110-171 (192)
55 1zxm_A TOPO IIA ATPase, DNA to 97.2 0.00032 1.1E-08 57.6 4.9 46 50-111 56-101 (400)
56 3lnu_A Topoisomerase IV subuni 97.1 0.0005 1.7E-08 56.7 4.6 69 24-112 27-98 (408)
57 3ke6_A Protein RV1364C/MT1410; 96.7 0.003 1E-07 50.9 6.6 48 49-110 300-348 (399)
58 1pvg_A DNA topoisomerase II; G 96.7 0.0027 9.1E-08 52.4 6.1 47 50-112 68-114 (418)
59 4gfh_A DNA topoisomerase 2; to 91.7 0.28 9.5E-06 45.2 6.1 44 51-110 64-107 (1177)
60 2yh9_A Small protein A, BAME p 64.6 2.5 8.6E-05 26.9 1.3 19 105-123 15-33 (88)
61 2km7_A Small protein A; BAME, 62.5 3.6 0.00012 27.0 1.8 20 104-123 28-47 (102)
62 2pxg_A Outer membrane protein; 53.6 6.8 0.00023 26.5 2.0 19 105-123 28-46 (118)
63 2hc5_A ORF 99, hypothetical pr 29.0 1.3E+02 0.0045 20.1 6.0 33 82-114 55-92 (117)
No 1
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.91 E-value=3.6e-25 Score=174.07 Aligned_cols=116 Identities=49% Similarity=0.678 Sum_probs=87.8
Q ss_pred Ccccccchhh--hcccccceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCC---------C-
Q psy15895 8 NHHYSTQAEA--ASNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVM---------P- 75 (124)
Q Consensus 8 ~~~~~~~~~~--~~~~~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~---------~- 75 (124)
.||.|.-.|. +.....+++.||+|+.++|++|.+.+|+++.|||||||+||.|||.|+| ..+..++ +
T Consensus 7 ~~~~~~~~~~~~~~~~~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~ 85 (272)
T 3ied_A 7 HHHHSSGRENLYFQGSPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNE 85 (272)
T ss_dssp -------CCCCEETTEECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC----
T ss_pred ccccccchhhhhccccccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhcccccccc
Confidence 3455544443 2233458999999999999999999999999999999999999999988 4443110 0
Q ss_pred ------------------------CCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccCCC
Q psy15895 76 ------------------------FPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 76 ------------------------~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S~~ 124 (124)
+|.....+.++|++..+++..+|+|.|||+||+++++.++|++||+||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGt 158 (272)
T 3ied_A 86 EIKNETEKEKTENVNESTDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGT 158 (272)
T ss_dssp ----------------------------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHH
T ss_pred ccccccccccccccccccccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcch
Confidence 0111234568899999999999999999999999999999999999984
No 2
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.89 E-value=2.4e-24 Score=170.70 Aligned_cols=113 Identities=53% Similarity=0.815 Sum_probs=90.1
Q ss_pred cccccchhhh----cccccceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCe
Q psy15895 9 HHYSTQAEAA----SNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGK 84 (124)
Q Consensus 9 ~~~~~~~~~~----~~~~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~ 84 (124)
||.|+-.|.+ -.+..+++.||+++.+++++|.+.+|+++.+|+||||+||.||+.++||..+..++.. ...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~---~~~~~ 81 (281)
T 3peh_A 5 HHHSSGRENLYFQGPTESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVL---GEEKK 81 (281)
T ss_dssp ----------------CCCCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGG---TTCCC
T ss_pred cccccchhhhhHHHHhhccceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhc---cCCCc
Confidence 4455443332 3455589999999999999999999999999999999999999999999877654322 34567
Q ss_pred EEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccCCC
Q psy15895 85 LEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 85 i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S~~ 124 (124)
++|.+..+++..+|+|.|||+||+++++.++|++||+||+
T Consensus 82 l~I~I~~d~~~~tLtI~DNGiGMt~edL~~~LgtIa~Sgt 121 (281)
T 3peh_A 82 LEIRISANKEKNILSITDTGIGMTKVDLINNLGTIAKSGT 121 (281)
T ss_dssp CCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHHHHHSCH
T ss_pred eEEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHHhHhh
Confidence 8888888888899999999999999999999999999984
No 3
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.88 E-value=1.2e-23 Score=163.55 Aligned_cols=100 Identities=49% Similarity=0.788 Sum_probs=88.6
Q ss_pred ccceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEE
Q psy15895 22 NAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQ 101 (124)
Q Consensus 22 ~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~ 101 (124)
..+++.||+|+.+++++|.+.+|+++.+|+||||+||.||+.++||..+..+... ..++.++|++..+++..+|+|.
T Consensus 15 ~~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~---~~~~~~~I~I~~d~~~~~L~I~ 91 (239)
T 3nmq_A 15 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKL---DSGKELKIDIIPNPQERTLTLV 91 (239)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG---TTCCCCCEEEEEETTTTEEEEE
T ss_pred cceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhc---cCCCceEEEEEEeCCccEEEEE
Confidence 3589999999999999999999999999999999999999999998766644321 3456788898888889999999
Q ss_pred EcCCCCCHHHHHhhccccccCCC
Q psy15895 102 DSGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 102 DnGiGM~~e~l~~~l~~i~~S~~ 124 (124)
|||+||+++++.++|++||+||+
T Consensus 92 DnGiGMt~edL~~~LgtIA~Sgt 114 (239)
T 3nmq_A 92 DTGIGMTKADLINNLGTIAKSGT 114 (239)
T ss_dssp ECSCCCCHHHHHTHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHhcccc
Confidence 99999999999999999999873
No 4
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.87 E-value=1.6e-22 Score=159.30 Aligned_cols=100 Identities=47% Similarity=0.795 Sum_probs=88.9
Q ss_pred ccceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEE
Q psy15895 22 NAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQ 101 (124)
Q Consensus 22 ~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~ 101 (124)
..+++.||+++.++++++.+.+|+++.+|+||||+||.||+.+++|..+..++.. ...+.+.|.+..+++..+|+|.
T Consensus 4 ~~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~---~~~~~~~I~i~~d~~~~~l~I~ 80 (269)
T 1qy5_A 4 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL---AGNEELTVKIKCDKEKNLLHVT 80 (269)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTT---TTCCCCCEEEEEETTTTEEEEE
T ss_pred cccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhc---cCCCceEEEEEEcCCceEEEEE
Confidence 4588999999999999999999999999999999999999999999877655432 3456778888888888999999
Q ss_pred EcCCCCCHHHHHhhccccccCCC
Q psy15895 102 DSGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 102 DnGiGM~~e~l~~~l~~i~~S~~ 124 (124)
|||+||++++|.++|++||+||+
T Consensus 81 DnGiGMt~edl~~~l~tia~Sgt 103 (269)
T 1qy5_A 81 DTGVGMTREELVKNLGTIAKSGT 103 (269)
T ss_dssp ECSCCCCHHHHHHHHHSCCSHHH
T ss_pred ECCCCCCHHHHHHHhhhhccccc
Confidence 99999999999999999999974
No 5
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.86 E-value=1.3e-22 Score=158.98 Aligned_cols=101 Identities=49% Similarity=0.799 Sum_probs=88.0
Q ss_pred ccccceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEE
Q psy15895 20 NDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILT 99 (124)
Q Consensus 20 ~~~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~ 99 (124)
.++.+++.||+++.+++++|.+.+|+++.+|+||||+||.||+.+++|..+..+... ..++.++|++..+++..+|+
T Consensus 34 ~~~~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~---~~~~~~~I~I~~d~~~~~I~ 110 (256)
T 3o0i_A 34 EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKL---DSGKELHINLIPNKQDRTLT 110 (256)
T ss_dssp --CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG---TTCCCCCEEEEEETTTTEEE
T ss_pred cccceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhc---cCCCceEEEEEEcCCceEEE
Confidence 345699999999999999999999999999999999999999999998766544321 34567888888888899999
Q ss_pred EEEcCCCCCHHHHHhhccccccCC
Q psy15895 100 IQDSGIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 100 I~DnGiGM~~e~l~~~l~~i~~S~ 123 (124)
|.|||+||+++++.++|+++|.||
T Consensus 111 I~DnG~GMt~edl~~~l~~ia~S~ 134 (256)
T 3o0i_A 111 IVDTGIGMTKADLINNLGTIAKSG 134 (256)
T ss_dssp EEECSCCCCHHHHHTHHHHHHHHH
T ss_pred EecCCCCcCHHHHHHHHHhhcccc
Confidence 999999999999999999999986
No 6
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.85 E-value=1.4e-21 Score=150.64 Aligned_cols=101 Identities=49% Similarity=0.799 Sum_probs=86.4
Q ss_pred ccccceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEE
Q psy15895 20 NDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILT 99 (124)
Q Consensus 20 ~~~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~ 99 (124)
.+..+++.||+++.+++++|.+.+|+++.+|+||||+||.||+.++++..+..+... ...+.++|.+..+++..+|+
T Consensus 6 ~~~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~---~~~~~i~I~I~~d~~~~~i~ 82 (228)
T 3t0h_A 6 EEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKL---DSGKELHINLIPNKQDRTLT 82 (228)
T ss_dssp --CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGG---TTCCCCCEEEEEETTTTEEE
T ss_pred cccccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccc---cCCCceEEEEEEeCCeeEEE
Confidence 345589999999999999999999999999999999999999999888765433211 23456788888888889999
Q ss_pred EEEcCCCCCHHHHHhhccccccCC
Q psy15895 100 IQDSGIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 100 I~DnGiGM~~e~l~~~l~~i~~S~ 123 (124)
|.|||+||+++++..+|+++|.||
T Consensus 83 V~DnG~GMs~edl~~~l~~ia~S~ 106 (228)
T 3t0h_A 83 IVDTGIGMTKADLINNLGTIAKSG 106 (228)
T ss_dssp EEECSCCCCHHHHHTGGGSCHHHH
T ss_pred EEeCCCCCCHHHHHHHHHhhcccc
Confidence 999999999999999999999886
No 7
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.84 E-value=1.3e-21 Score=169.62 Aligned_cols=114 Identities=44% Similarity=0.724 Sum_probs=70.7
Q ss_pred CcccccchhhhcccccceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEE
Q psy15895 8 NHHYSTQAEAASNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEI 87 (124)
Q Consensus 8 ~~~~~~~~~~~~~~~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I 87 (124)
.||.|+-.-.....+.+++.||+++.++++++.+.+|+++.+|+||||+||.||+.++|+..+..+... ...+.++|
T Consensus 7 ~~~~~~~~~~~~~~~~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~---~~a~~~~I 83 (666)
T 2o1u_A 7 HHHHSSGLVPRGSHMSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL---AGNEELTV 83 (666)
T ss_dssp ---------------------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSS---SSCCCCCE
T ss_pred ccccccCcCCCCCccccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhc---cCCCccEE
Confidence 355555544444455689999999999999999999999999999999999999999999887654432 23455677
Q ss_pred EEEEcCCceEEEEEEcCCCCCHHHHHhhccccccCCC
Q psy15895 88 RISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 88 ~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S~~ 124 (124)
++..+++..+|+|.|||+||+++++.++|++||.||+
T Consensus 84 ~I~~d~~~~~I~I~DnGiGMt~edl~~~l~tIA~SGt 120 (666)
T 2o1u_A 84 KIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGT 120 (666)
T ss_dssp EEEEETTTTEEEEEECSCCCCHHHHHHHTTC------
T ss_pred EEEEeCCCCEEEEEECCCCCCHHHHHHHHhhhccccc
Confidence 7777777789999999999999999999999999985
No 8
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.5e-21 Score=165.51 Aligned_cols=99 Identities=53% Similarity=0.830 Sum_probs=87.8
Q ss_pred cceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEE
Q psy15895 23 AEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQD 102 (124)
Q Consensus 23 ~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~D 102 (124)
.+++.||+++.+++++|.+.+|+++.+|+||||+||.||+.++||..+..++.. ...+.++|++..+++..+|+|.|
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~---~~~~~~~I~I~~d~~~~~I~I~D 79 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQL---ETEPDLFIRITPKPEQKVLEIRD 79 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTT---TTCCCCCEEEEEEGGGTEEEEEE
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhc---cCCCCcEEEEEEeCCCCEEEEEE
Confidence 378999999999999999999999999999999999999999999987765432 23456777777777778999999
Q ss_pred cCCCCCHHHHHhhccccccCCC
Q psy15895 103 SGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 103 nGiGM~~e~l~~~l~~i~~S~~ 124 (124)
||+||+++++.++|++||+||+
T Consensus 80 nGiGMt~edl~~~l~tIA~Sgt 101 (677)
T 2cg9_A 80 SGIGMTKAELINNLGTIAKSGT 101 (677)
T ss_dssp CSCCCCHHHHHGGGSSSSSCTT
T ss_pred CCCCCCHHHHHHHHHhHhcccc
Confidence 9999999999999999999985
No 9
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.84 E-value=5.1e-21 Score=147.75 Aligned_cols=100 Identities=47% Similarity=0.795 Sum_probs=82.0
Q ss_pred ccceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEE
Q psy15895 22 NAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQ 101 (124)
Q Consensus 22 ~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~ 101 (124)
+.+++.|++++.++++++.+.+|+++.+|++|||+||.||+.+++|..+..++.. ...+.+.|.+..+++...|+|.
T Consensus 8 ~~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~---~~~~~~~I~i~~d~~~~~i~I~ 84 (236)
T 2gqp_A 8 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL---AGNEELTVKIKCDKEKNLLHVT 84 (236)
T ss_dssp TTTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTT---TTCCCCCEEEEEETTTTEEEEE
T ss_pred cccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccc---cCCCceEEEEEEcCCCCEEEEE
Confidence 4588999999999999999999999999999999999999999888766544321 2345567777777777899999
Q ss_pred EcCCCCCHHHHHhhccccccCCC
Q psy15895 102 DSGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 102 DnGiGM~~e~l~~~l~~i~~S~~ 124 (124)
|||+||+++++.++|++||.||+
T Consensus 85 DnG~GMt~edl~~~l~~ia~Sg~ 107 (236)
T 2gqp_A 85 DTGVGMTREELVKNLGTIAKSGT 107 (236)
T ss_dssp ECSCCCCHHHHHHHHHCC-----
T ss_pred ECCcCCCHHHHHHHHhhhccccc
Confidence 99999999999999999999974
No 10
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.81 E-value=3.5e-20 Score=141.15 Aligned_cols=98 Identities=51% Similarity=0.827 Sum_probs=83.9
Q ss_pred cceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEE
Q psy15895 23 AEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQD 102 (124)
Q Consensus 23 ~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~D 102 (124)
.+++.|++++.++++++.+.+|+++.++++|||+||.||+.++++..+..++.. ..++.+.|.+..+++...|+|.|
T Consensus 3 ~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~---~~~~~i~I~i~~~~~~~~i~I~D 79 (220)
T 2wer_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQL---ETEPDLFIRITPKPEQKVLEIRD 79 (220)
T ss_dssp CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGG---GGCCCCCEEEEEEGGGTEEEEEE
T ss_pred CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhc---cCCCcEEEEEEECCCCCEEEEEE
Confidence 378999999999999999999999999999999999999998887655432211 23466778887777788999999
Q ss_pred cCCCCCHHHHHhhccccccCC
Q psy15895 103 SGIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 103 nGiGM~~e~l~~~l~~i~~S~ 123 (124)
||+||+++++.+.|+++|.||
T Consensus 80 nG~GMs~edl~~~l~~ia~S~ 100 (220)
T 2wer_A 80 SGIGMTKAELINNLGTIAKSG 100 (220)
T ss_dssp CSCCCCHHHHHHHTTTSCCTT
T ss_pred cCCCCCHHHHHHHHHhHhccc
Confidence 999999999999999999997
No 11
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.80 E-value=6.5e-20 Score=156.53 Aligned_cols=99 Identities=52% Similarity=0.834 Sum_probs=85.4
Q ss_pred cceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEE
Q psy15895 23 AEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQD 102 (124)
Q Consensus 23 ~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~D 102 (124)
.+++.|++++.++++++.+.+|+++.+|++|||+||.||+.++|+..+..++.. ...+.++|++..+++..+|+|.|
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~---~~~~~~~I~I~~d~~~~~I~I~D 80 (559)
T 1y4s_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY---EGDGELRVRVSFDKDKRTLTISD 80 (559)
T ss_dssp CEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG---CSCCCCCEEEEEETTTTEEEEEE
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhc---cCCCccEEEEEEeCCCcEEEEEE
Confidence 378999999999999999999999999999999999999999999876644321 23445677777777778999999
Q ss_pred cCCCCCHHHHHhhccccccCCC
Q psy15895 103 SGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 103 nGiGM~~e~l~~~l~~i~~S~~ 124 (124)
||+||+++++.++|++||.||+
T Consensus 81 nGiGMt~edl~~~l~tiA~Sg~ 102 (559)
T 1y4s_A 81 NGVGMTRDEVIDHLGTIAKSGT 102 (559)
T ss_dssp CSSCCCHHHHHHHHSCCSCCCC
T ss_pred CCCCCCHHHHHHHHhhhccccc
Confidence 9999999999999999999984
No 12
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.80 E-value=1.3e-19 Score=139.57 Aligned_cols=101 Identities=50% Similarity=0.808 Sum_probs=83.5
Q ss_pred ccccceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEE
Q psy15895 20 NDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILT 99 (124)
Q Consensus 20 ~~~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~ 99 (124)
+.+.+++.|++++.++++++.+.+|+++.++++|||+||.||+.++++..+..++.. +..+.+.|.+..+++...|+
T Consensus 21 ~~~~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~---~~~~~~~I~i~~~~~~~~i~ 97 (235)
T 2ior_A 21 MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY---EGDGELRVRVSFDKDKRTLT 97 (235)
T ss_dssp CEEEEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGG---TTCCCCCEEEEEETTTTEEE
T ss_pred ccccccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCcccc---CCCceEEEEEEEcCCceEEE
Confidence 334489999999999999999999999999999999999999998888654432211 22444667776666667899
Q ss_pred EEEcCCCCCHHHHHhhccccccCC
Q psy15895 100 IQDSGIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 100 I~DnGiGM~~e~l~~~l~~i~~S~ 123 (124)
|.|||+||+++++.+.|+++|.||
T Consensus 98 I~DnG~GMs~edl~~~~~~ia~S~ 121 (235)
T 2ior_A 98 ISDNGVGMTRDEVIDHLGTIAKSG 121 (235)
T ss_dssp EEECSSCCCHHHHHHHHTTCCCTT
T ss_pred EEECCCCCCHHHHHHHHHHHcccc
Confidence 999999999999999999999997
No 13
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.79 E-value=1.5e-19 Score=141.80 Aligned_cols=99 Identities=49% Similarity=0.802 Sum_probs=84.9
Q ss_pred ccceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEE
Q psy15895 22 NAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQ 101 (124)
Q Consensus 22 ~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~ 101 (124)
+.+++.|++++.++++++.+.+|+++.+|++|||+||.||+.++++..+..++.. ...+.+.|.+..+++...|+|.
T Consensus 44 ~~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~---~~~~~i~I~i~~d~~~~~I~I~ 120 (264)
T 1yc1_A 44 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKL---DSGKELHINLIPNKQDRTLTIV 120 (264)
T ss_dssp CEEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG---GGCCCCCEEEEEETTTTEEEEE
T ss_pred cceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCcccc---CCCCeEEEEEEECCCeeEEEEE
Confidence 4589999999999999999999999999999999999999998888755432211 1246678888777778899999
Q ss_pred EcCCCCCHHHHHhhccccccCC
Q psy15895 102 DSGIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 102 DnGiGM~~e~l~~~l~~i~~S~ 123 (124)
|||+||+++++.++|++||.||
T Consensus 121 DnG~GMs~edL~~~l~~ia~S~ 142 (264)
T 1yc1_A 121 DTGIGMTKADLINNLGTIAKSG 142 (264)
T ss_dssp ECSCCCCHHHHHHHHHSCTTSC
T ss_pred ECCcCCCHHHHHHHHHhhcccc
Confidence 9999999999999999999997
No 14
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.78 E-value=1.4e-19 Score=156.02 Aligned_cols=98 Identities=52% Similarity=0.843 Sum_probs=74.4
Q ss_pred ceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEc
Q psy15895 24 EKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDS 103 (124)
Q Consensus 24 e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~Dn 103 (124)
+++.||+++.++++++.+.+|+++.+|++|||+||.||+.++|+..+..++.. ...+.++|++..+++..+|+|.||
T Consensus 5 e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~---~~a~~~~I~I~~d~~~~~I~I~Dn 81 (624)
T 2ioq_A 5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY---EGDGELRVRVSFDKDKRTLTISDN 81 (624)
T ss_dssp ----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTT---TTCCCCCEEEEEETTTTEEEEEEC
T ss_pred cceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccc---cCCCCcEEEEEEeCCCcEEEEEEC
Confidence 78999999999999999999999999999999999999999999877655432 234556777777777789999999
Q ss_pred CCCCCHHHHHhhccccccCCC
Q psy15895 104 GIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 104 GiGM~~e~l~~~l~~i~~S~~ 124 (124)
|+||+++++.++|++||.||+
T Consensus 82 GiGMt~edl~~~l~tiA~Sg~ 102 (624)
T 2ioq_A 82 GVGMTRDEVIDHLGTIAKSGT 102 (624)
T ss_dssp SCCCCHHHHHHHHHHHCC---
T ss_pred CCCCCHHHHHHHHHhhccccc
Confidence 999999999999999999984
No 15
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=98.66 E-value=1.2e-07 Score=65.16 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=41.0
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+.+|+.|| +||. + .+.+.|.+..+++.+.|+|.|+|.||+++++.+ +++++
T Consensus 51 l~nLl~NA------~~~~-----------~-~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~-if~~f 101 (150)
T 1ysr_A 51 VDNAIANA------VKHG-----------G-ATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQV-VFERF 101 (150)
T ss_dssp HHHHHHHH------HHTT-----------C-CSEEEEEEEEETTEEEEEEEESSSCCCGGGHHH-HHTSC
T ss_pred HHHHHHHH------HhcC-----------C-CcEEEEEEEecCCEEEEEEEECCCCCCHHHHHH-Hhccc
Confidence 45699999 7875 2 348999999999999999999999999999944 44443
No 16
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=98.64 E-value=8.8e-08 Score=65.46 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=43.0
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+.+|+.|| +||+ +.++.+.|.+..+++.+.|+|.|+|.||+++++ +.+++++
T Consensus 52 l~nll~NA------i~~~-----------~~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~-~~~f~~~ 103 (152)
T 3a0y_A 52 LINLVQNA------IEAT-----------GENGKIKITSEDMYTKVRVSVWNSGPPIPEELK-EKIFSPF 103 (152)
T ss_dssp HHHHHHHH------HHHH-----------CTTCEEEEEEEECSSEEEEEEEEESCCCCGGGT-TGGGSTT
T ss_pred HHHHHHHH------HHhc-----------CCCCEEEEEEEecCCEEEEEEEeCCCCcCHHHH-HhHhhhh
Confidence 55699999 7887 457889999999999999999999999999998 4444444
No 17
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=98.58 E-value=2.1e-07 Score=69.33 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=44.6
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
+.+|+.|| +|+. +.++.|.|.+..+++.+.|.|.|||+||+++.+ ..+++++.|
T Consensus 160 l~nLl~NA------~~~~-----------~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~-~~if~~~~~ 213 (268)
T 4ew8_A 160 LDHLVENA------LRQT-----------PPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQ-AHIFDRFVG 213 (268)
T ss_dssp HHHHHHHH------HHHS-----------CTTCEEEEEEEECSSEEEEEEEESSCCCCHHHH-TTTTSTTCC
T ss_pred HHHHHHHH------HHhC-----------CCCCEEEEEEEecCCEEEEEEEcCCCCCCHHHH-HHHHHHHhc
Confidence 45599999 7876 456899999999999999999999999999999 555555543
No 18
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.57 E-value=1.1e-07 Score=72.99 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=44.9
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
+.+|+.|| +||. +.++.+.|.+..+++.+.|+|.|||+||+++.+ +.+++++.+
T Consensus 249 l~nLl~NA------~k~~-----------~~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~-~~if~~f~~ 302 (349)
T 3a0r_A 249 LINLVQNA------IEAT-----------GENGKIKITSEDMYTKVRVSVWNSGPPIPEELK-EKIFSPFFT 302 (349)
T ss_dssp HHHHHTHH------HHTT-----------CTTCCEEEEEEEETTEEEEEEEEESCCCCGGGG-TTTSSSCCC
T ss_pred HHHHHHHH------HHhc-----------cCCCEEEEEEEecCCEEEEEEEECCCCCChHHH-hhcCCCCcc
Confidence 44599999 7886 457889999999999999999999999999998 666665543
No 19
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=98.56 E-value=1.6e-07 Score=69.96 Aligned_cols=56 Identities=13% Similarity=0.322 Sum_probs=42.4
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
+.+||.|| +||+.-. ...+.+.|.+...++.+.|+|.|||+||+++.+ +.+++++.
T Consensus 143 l~NLl~NA------ik~~~~~--------~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~-~~if~~f~ 198 (258)
T 2c2a_A 143 LLNLLNNG------VKYSKKD--------APDKYVKVILDEKDGGVLIIVEDNGIGIPDHAK-DRIFEQFY 198 (258)
T ss_dssp HHHHHHHH------HHTCCTT--------CTTCEEEEEEEEETTEEEEEEEECSSCCCGGGT-TGGGSTTC
T ss_pred HHHHHHHH------HhcCcCC--------CCceeEEEEEecCCCeEEEEEEecCCCCCHHHH-Hhhccccc
Confidence 34499999 8886310 134678888888889999999999999999999 55555543
No 20
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=98.56 E-value=2.4e-07 Score=67.64 Aligned_cols=53 Identities=32% Similarity=0.540 Sum_probs=43.7
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
+.+|+.|| ++|. +.++.+.|.+..+++.+.|+|.|||+||+++.+ ..++.++.
T Consensus 128 l~nLl~NA------~~~~-----------~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~-~~if~~~~ 180 (244)
T 3d36_A 128 LLNVMKNA------IEAM-----------PNGGTLQVYVSIDNGRVLIRIADTGVGMTKEQL-ERLGEPYF 180 (244)
T ss_dssp HHHHHHHH------HHTC-----------TTCEEEEEEEEEETTEEEEEEEECSSCCCHHHH-HHTTSTTC
T ss_pred HHHHHHHH------HHhc-----------cCCCeEEEEEEEeCCEEEEEEEecCCCCCHHHH-HHHhcccc
Confidence 45599999 7886 457889999999999999999999999999998 55555544
No 21
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=98.53 E-value=2.5e-07 Score=66.18 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=39.7
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCC-CCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPF-PTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~-eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
+.+|+.|| +||......... ...+.++.|.|.+..+++.+.|+|.|||+||+++++
T Consensus 52 l~nLl~NA------ik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~ 108 (189)
T 1i58_A 52 LLHLLRNA------IDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKI 108 (189)
T ss_dssp HHHHHHHH------HHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHH
T ss_pred HHHHHHHH------HHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHH
Confidence 55699999 777521000000 000357889999999999999999999999999986
No 22
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.49 E-value=1.5e-07 Score=75.33 Aligned_cols=61 Identities=28% Similarity=0.461 Sum_probs=45.9
Q ss_pred hhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 42 SLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 42 ~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
.....+..+++||++||+||. ...|.|.+.. ++...|+|.|||+||+++++...|..++.
T Consensus 20 evi~~~~~~v~ELi~NaidA~-------------------a~~I~I~i~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~t 79 (333)
T 1b63_A 20 EVVERPASVVKELVENSLDAG-------------------ATRIDIDIER-GGAKLIRIRDNGCGIKKDELALALARHAT 79 (333)
T ss_dssp HHCSSHHHHHHHHHHHHHHTT-------------------CSEEEEEEEG-GGTSEEEEEECSCCCCGGGHHHHHSTTCC
T ss_pred CchhCHHHHHHHHHHHHHHCC-------------------CCeEEEEEEe-CCceEEEEEEcCCCcCHHHHHHhhhcccc
Confidence 344567778889999996643 2356666653 34579999999999999999888877665
Q ss_pred C
Q psy15895 122 S 122 (124)
Q Consensus 122 S 122 (124)
|
T Consensus 80 s 80 (333)
T 1b63_A 80 S 80 (333)
T ss_dssp S
T ss_pred c
Confidence 5
No 23
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=98.47 E-value=1.3e-07 Score=64.98 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=33.4
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCC----------ceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQ----------NRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~----------~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+.+|+.|| +||+. +.++.+.|.+..+++ .+.|+|.|+|.||+++++ +.+++++
T Consensus 53 l~nLl~NA------ik~~~----------~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~-~~lf~~~ 115 (160)
T 1r62_A 53 LLNIVRNA------LQALG----------PEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQ-DTLFYPM 115 (160)
T ss_dssp HHHHHHHH------HHHHG----------GGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------
T ss_pred HHHHHHHH------HHHhh----------ccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHH-HHhhCcc
Confidence 55699999 78772 116889999887776 899999999999999998 4444444
No 24
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=98.46 E-value=5e-07 Score=68.14 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=44.5
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCC--CCHHHHHhhccccccC
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIG--MTKEELKSNLGTIARS 122 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiG--M~~e~l~~~l~~i~~S 122 (124)
++++| |+.|| +||. +.+|.|+|.+..+++.+.|+|.|+|.| |+++.+ ++|+....+
T Consensus 149 qvl~N-Ll~NA------~~a~-----------~~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~-~~~f~~~~~ 206 (247)
T 4fpp_A 149 RAVLN-IAQIA------ASAL-----------PAGGVATVKGVAADGRFSIIADAKGPRARLRPEVL-AGLKGEPLA 206 (247)
T ss_dssp HHHHH-HHHHH------HTTC-----------TTCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHH-HHHTTCCCC
T ss_pred HHHHH-HHHHH------HHhc-----------CCCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHH-HHhcCCCCC
Confidence 56676 99999 7776 678999999999999999999999977 677777 455444443
No 25
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=98.46 E-value=2.6e-07 Score=74.07 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=42.4
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
+.+||.|| +||+.-.-. .....+.|+|.+..+++.+.|+|.|+|+||+++++ +.+++++.
T Consensus 236 l~NLl~NA------ik~~~~~~~----~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~-~~iF~~f~ 295 (394)
T 2btz_A 236 LFELFKNA------MRATVESHE----SSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKI-ERLFSYMY 295 (394)
T ss_dssp HHHHHHHH------HHHHHHTTT----TCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHH-HHHTCTTT
T ss_pred HHHHHHHH------HHHhhhccc----cCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHH-HHHhcccc
Confidence 44599999 666531100 00113579999999999999999999999999999 55555443
No 26
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=98.46 E-value=1.6e-07 Score=76.17 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=32.4
Q ss_pred CeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 83 GKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 83 g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
+.|+|.+..+++.+.|+|.|+|+||+++++ +++++++.
T Consensus 281 ~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l-~~iF~~f~ 318 (419)
T 1y8o_A 281 PAVKTLVTLGKEDLSIKISDLGGGVPLRKI-DRLFNYMY 318 (419)
T ss_dssp CCEEEEEEECSSEEEEEEEECSCCCCHHHH-GGGGCTTT
T ss_pred CCEEEEEEeCCCEEEEEEEECCCCCCHHHH-HHHhCccc
Confidence 479999999999999999999999999999 55555543
No 27
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=98.46 E-value=2.3e-07 Score=74.84 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=42.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
+.+||.|| +||+.-.-... ...+.|+|.+..+++.+.|+|.|+|+||+++++ .++++++.
T Consensus 248 l~NLl~NA------ik~t~~~~~~~----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~-~~if~~f~ 307 (407)
T 2q8g_A 248 VFELFKNA------MRATMEHHANR----GVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKI-DRLFNYMY 307 (407)
T ss_dssp HHHHHHHH------HHHHHHHSTTT----CCCCCEEEEEEECSSEEEEEEEECSCCCCHHHH-GGGGCTTT
T ss_pred HHHHHHHH------HHHHhhccccC----CCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHH-HHHhCccc
Confidence 44599999 56552110000 123579999999999999999999999999999 55555443
No 28
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=98.44 E-value=5.7e-07 Score=61.61 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=40.6
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+.+|+.|| +||+ + +.+.|.+..+++.+.|+|.|+|.||+++.+ +.+++++
T Consensus 49 l~nLl~NA------i~~~-----------~--~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~-~~~f~~~ 98 (152)
T 1id0_A 49 MGNVLDNA------CKYC-----------L--EFVEISARQTDEHLYIVVEDDGPGIPLSKR-EVIFDRG 98 (152)
T ss_dssp HHHHHHHH------HHHC-----------S--SEEEEEEEECSSCEEEEEEESSSCCCGGGT-TGGGSCC
T ss_pred HHHHHHHH------HHhC-----------c--CeEEEEEEecCCEEEEEEEeCCCCcCHHHH-HHHhccc
Confidence 55699999 7886 2 278888888999999999999999999998 4554443
No 29
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=98.44 E-value=1.6e-07 Score=75.06 Aligned_cols=62 Identities=23% Similarity=0.326 Sum_probs=43.0
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
+.+||.|| +||..-.-... -...+.|+|.+..+++.+.|+|+|+|+||+++++ +++++++.+
T Consensus 243 l~NLl~NA------ik~~~~~~~~~---~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~-~~iF~~f~~ 304 (388)
T 1gkz_A 243 LPELLKNA------MRATMESHLDT---PYNVPDVVITIANNDVDLIIRISDRGGGIAHKDL-DRVMDYHFT 304 (388)
T ss_dssp HHHHHHHH------HHHHHHTCTTC---TTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTT-TTTTSTTCC
T ss_pred HHHHHHHH------HHHhhccccCC---CCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHH-HHhcCcccc
Confidence 44599999 55552110000 0122489999999999999999999999999999 666665443
No 30
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=98.41 E-value=5.3e-07 Score=62.73 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=41.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
+.+|+.|| +||. ++.+.|.+..+++.+.|.|.|||.||+++++ ..+++++.
T Consensus 52 l~nll~NA------ik~~-------------~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~-~~~f~~f~ 102 (161)
T 1bxd_A 52 VANMVVNA------ARYG-------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQR-KHLFQPFV 102 (161)
T ss_dssp HHHHHHHH------HTTC-------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGG-GCSSCCCC
T ss_pred HHHHHHHH------Hhhc-------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHH-HHhCCCce
Confidence 45599999 7774 4689999999999999999999999999998 55555443
No 31
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=98.40 E-value=2.9e-07 Score=73.98 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=41.9
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
+.+||.|| +||+.-.-.. ....+.|+|.+..+++.+.|+|.|+|+||+++++ +.+++++.
T Consensus 235 l~NLl~NA------ik~~~~~~~~----~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~-~~if~~f~ 294 (394)
T 2e0a_A 235 LFELFKNA------MRATVEHQEN----QPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRII-DRLFSYTY 294 (394)
T ss_dssp HHHHHHHH------HHHHHHHTTT----SSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGH-HHHTSTTC
T ss_pred HHHHHHHH------HHHHHhcccc----cCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHH-HHHhCcCc
Confidence 44599999 5555211000 0123579999999999999999999999999999 45544443
No 32
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=98.39 E-value=4.3e-07 Score=61.52 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=37.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
++|++.|| +||. ..+.+.|.+..+++.+.|+|.|||+||+++.+
T Consensus 45 l~nll~Na------~k~~------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 45 LKEAVTNV------VKHS------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHH------HHHT------------CCSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHH------HhcC------------CCcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 56688999 8886 24689999999999999999999999998764
No 33
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=98.39 E-value=4.3e-07 Score=64.24 Aligned_cols=53 Identities=25% Similarity=0.516 Sum_probs=40.3
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEE--EEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRI--STDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i--~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
+.+||.|| ++++ +.++.+.|.+ ..+++.+.|+|.|||.||+++.+ ..++..+.
T Consensus 48 l~nLl~NA------i~~~-----------~~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~-~~lf~~~~ 102 (177)
T 3sl2_A 48 LDNIISNA------LKYS-----------PEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDV-EKVFDRFY 102 (177)
T ss_dssp HHHHHHHH------HHTC-----------CTTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTT-TTTTSTTC
T ss_pred HHHHHHHH------HHhC-----------CCCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHH-HHHHhhhc
Confidence 45599999 7886 3456677777 55677899999999999999998 55554443
No 34
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=98.36 E-value=1.1e-06 Score=70.71 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=30.5
Q ss_pred CCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 80 HDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 80 ~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
+..|.|+|.+..+++.+.|+|+|+|+||+++.+
T Consensus 135 ~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~ 167 (379)
T 1b3q_A 135 PPIGTLILSARHEGNNVVIEVEDDGRGIDKEKI 167 (379)
T ss_dssp CSSEEEEEEEEEETTEEEEEEEECSCCCCHHHH
T ss_pred CCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHH
Confidence 467899999999999999999999999999987
No 35
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=98.34 E-value=1.3e-06 Score=60.01 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=37.0
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCC
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMT 108 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~ 108 (124)
.+.+|+.|| +||..-. ..++.+.|.+..+++.+.|+|.|||.||+
T Consensus 43 il~~l~~Na------i~h~~~~--------~~~~~I~i~~~~~~~~~~i~V~D~G~g~~ 87 (145)
T 1th8_A 43 VVSEAVTNA------IIHGYNN--------DPNGIVSISVIIEDGVVHLTVRDEGVGIP 87 (145)
T ss_dssp HHHHHHHHH------HHTTSTT--------CTTSEEEEEEEEETTEEEEEEEECSSCCS
T ss_pred HHHHHHHHH------HHHhcCC--------CCCCEEEEEEEEeCCEEEEEEEECCCCcC
Confidence 466799999 8887311 12688999999999999999999999999
No 36
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.31 E-value=1.3e-06 Score=70.79 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=41.2
Q ss_pred cCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 44 YSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 44 y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
-..+.-.+.||++||+||. ...|.|.+. +++...|+|.|||+||+++++ ..+++.+.+
T Consensus 26 i~~~~~vv~eLv~NAidA~-------------------a~~I~I~i~-~~~~~~I~V~DnG~GI~~~~l-~~~~~~~~t 83 (348)
T 3na3_A 26 IQRPANAIKEMIENCLDAK-------------------STSIQVIVK-EGGLKLIQIQDNGTGIRKEDL-DIVCERFTT 83 (348)
T ss_dssp CCSHHHHHHHHHHHHHHTT-------------------CSEEEEEEE-GGGTSEEEEEECSCCCCGGGG-GTTTSTTCC
T ss_pred ccCHHHHHHHHHHHHHHcC-------------------CCEEEEEEE-eCCEEEEEEEECCcCcChHHh-hhhhccccc
Confidence 3445555667999997661 246777775 445678999999999999999 455555444
No 37
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=98.31 E-value=1.2e-06 Score=63.33 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=34.7
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
+.|++.|| +||. ..+.+.|.+..+++.+.|+|.|||+||+++.+
T Consensus 135 l~nll~Na------~k~~------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 135 LKEAVTNV------VKHS------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHH------HHHT------------CCSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHH------HHhC------------CCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 55688888 7886 24689999999999999999999999999875
No 38
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=98.26 E-value=6.6e-07 Score=64.36 Aligned_cols=50 Identities=28% Similarity=0.594 Sum_probs=25.2
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
+.+|+.|| +||. +.++.+.|.+..+. |.|.|||+||+++.+ +.+++++.+
T Consensus 122 l~nLl~NA------i~~~-----------~~~~~i~i~~~~~~----i~V~D~G~Gi~~~~~-~~if~~f~~ 171 (222)
T 3jz3_A 122 VRNLLDNA------VRYS-----------PQGSVVDVTLNADN----FIVRDNGPGVTPEAL-ARIGERFYR 171 (222)
T ss_dssp HHHHHHHH------HHTC-----------CTTCEEEEEECSSE----EEEECSCC-----------------
T ss_pred HHHHHHHH------HHcC-----------CCCCeEEEEEccCe----EEEEECCCCCCHHHH-HHHHhhhcc
Confidence 44599999 7886 45677777665433 999999999999998 555555443
No 39
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=98.25 E-value=1.7e-06 Score=70.48 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=40.4
Q ss_pred cCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 44 YSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 44 y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
-..+.-.+.||++||+||. ...|.|.+. +++...|+|.|||+||+++++. .+++...
T Consensus 23 i~~~~~vv~eLv~NaiDA~-------------------a~~I~I~i~-~~~~~~i~V~DnG~Gi~~~~l~-~~~~~~~ 79 (367)
T 3h4l_A 23 ITDLTTAVKELVDNSIDAN-------------------ANQIEIIFK-DYGLESIECSDNGDGIDPSNYE-FLALKHY 79 (367)
T ss_dssp CCSHHHHHHHHHHHHHHTT-------------------CSEEEEEEE-TTTTSEEEEEECSCCCCGGGTT-TTTCCEE
T ss_pred ccCHHHHHHHHHHHHHHCC-------------------CCEEEEEEE-eCCEEEEEEEECCCCcChhHhc-cceeccc
Confidence 3344455777999997752 235666663 5667899999999999999994 4444443
No 40
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=98.24 E-value=1.3e-06 Score=58.16 Aligned_cols=42 Identities=29% Similarity=0.531 Sum_probs=35.4
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
+.|++.|| +||. ..+.+.|.+..+++ +.|+|+|||+||+++.
T Consensus 44 l~nll~Na------~k~~------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 44 LREAVSNA------VRHA------------NATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHH------HTCT------------TCCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHH------HHhC------------CCCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 56689999 8886 24689999988888 9999999999999875
No 41
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=98.15 E-value=1.5e-06 Score=58.13 Aligned_cols=42 Identities=33% Similarity=0.553 Sum_probs=35.6
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
+.+|+.|| +||. ..+.+.|.+..+++ +.|+|.|||.||+++.
T Consensus 48 l~nll~NA------~k~~------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 48 VREAVSNA------VRHA------------AASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHC------CCCS------------SCCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHH------HHhC------------CCceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 55699999 8886 24789999998888 9999999999999764
No 42
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.11 E-value=3.3e-06 Score=68.49 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 47 KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 47 ~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
...++.||++||+||. ...|.|.+.. ++...|+|.|||+||+++++...|..++.|
T Consensus 35 ~~~vl~eLv~NAiDA~-------------------a~~I~I~i~~-~~~~~I~V~DnG~Gi~~~~l~~~f~~~~ts 90 (365)
T 1h7s_A 35 LSTAVKELVENSLDAG-------------------ATNIDLKLKD-YGVDLIEVSDNGCGVEEENFEGLTLKHHTS 90 (365)
T ss_dssp HHHHHHHHHHHHHHTT-------------------CSEEEEEEEG-GGTSEEEEEECSCCCCGGGSGGGGC-----
T ss_pred HHHHHHHHHHHHHHCC-------------------CCEEEEEEEe-CCcEEEEEEECCCCcCHHHHHHHhhhcccc
Confidence 4566788999996541 2456777653 456799999999999999997766655543
No 43
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.09 E-value=3.3e-06 Score=70.61 Aligned_cols=52 Identities=33% Similarity=0.570 Sum_probs=39.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCC---eEEEEEEEcC---CceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHG---KLEIRISTDK---QNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g---~i~I~i~~~~---~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+.||++|| +++.. .++ .|.|.+..++ +.+.|+|.|||+||+++++...|..+
T Consensus 37 l~nLv~NA------ida~~-----------~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f 94 (471)
T 1mu5_A 37 VRELIENS------LDATD-----------VHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRV 94 (471)
T ss_dssp HHHHHHHH------HHTTG-----------GGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCC
T ss_pred HHHHHHHH------HHHhh-----------cCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccc
Confidence 55699999 55542 234 7888887654 78999999999999999996555443
No 44
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.04 E-value=2.8e-06 Score=63.67 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=34.9
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
...+.|||.||+||+.. .....|.|.+. .+. .|+|.|||.|||.++.
T Consensus 19 ~~~v~Elv~NsiDa~~~---------------g~a~~I~V~i~--~~g-~i~V~DnG~GIp~~~~ 65 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALA---------------GHAKRVDVILH--ADQ-SLEVIDDGRGMPVDIH 65 (201)
T ss_dssp HHHHHHHHHHHHHHHHT---------------TCCSEEEEEEC--TTS-CEEEEECSSCCCCSBC
T ss_pred hhhhHHHHHHHHHHHhc---------------CCCcEEEEEEe--CCC-EEEEEECCCCcCcccc
Confidence 45678899999999753 12355666664 332 8999999999999874
No 45
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.04 E-value=4.2e-06 Score=70.97 Aligned_cols=52 Identities=33% Similarity=0.567 Sum_probs=40.1
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCC---eEEEEEEEcC---CceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHG---KLEIRISTDK---QNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g---~i~I~i~~~~---~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+.||++|| +++. ..++ .|.|.+..++ +.+.|+|.|||+||+++++...|..+
T Consensus 36 l~NLV~NA------ida~-----------~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f 93 (530)
T 2zbk_B 36 VRELIENS------LDAT-----------DVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRV 93 (530)
T ss_dssp HHHHHHHH------HTTT-----------TTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSC
T ss_pred HHHHHHHH------HHHH-----------hccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccc
Confidence 55699999 6665 2344 7888887655 78999999999999999996555444
No 46
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=97.92 E-value=9.6e-06 Score=70.02 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=39.6
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcC-CceEEEEEEcCCCCCHHHHHhhc
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDK-QNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~-~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
.+.||++||+|+... . ...+.|.|.+..++ +.+.|+|+|||+||+++++++.|
T Consensus 41 Vl~ELV~NAIDa~~~----------~----g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF 94 (621)
T 2q2e_B 41 TVKEAVDNALDACEE----------A----GILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVF 94 (621)
T ss_dssp HHHHHHHHHHHHHTT----------T----SCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHH
T ss_pred HHHHHHHHHHHHHhh----------c----CCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHh
Confidence 356799999555421 0 12347888888777 77899999999999999996655
No 47
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=97.76 E-value=8.7e-06 Score=66.51 Aligned_cols=48 Identities=23% Similarity=0.386 Sum_probs=35.6
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHh
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKS 114 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~ 114 (124)
-.+.|++.||+|+.. ++ ..+.|.|.+..+ ..|+|.|||+|||++++++
T Consensus 35 ~~v~Elv~N~iD~a~--~~-------------~~~~I~V~i~~~---~~i~V~DnG~GIp~~~~~~ 82 (390)
T 1kij_A 35 HLFKEILDNAVDEAL--AG-------------YATEILVRLNED---GSLTVEDNGRGIPVDLMPE 82 (390)
T ss_dssp HHHHHHHHHHHHHHH--TT-------------SCCEEEEEECTT---SCEEEEECSSCCCCSEETT
T ss_pred HHHHHHHHHHHHHhh--hC-------------CCCEEEEEEEcC---CEEEEEEcCCCCCHHHhhh
Confidence 357789999998873 32 346667666443 3899999999999988744
No 48
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.76 E-value=1.4e-05 Score=65.31 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=43.1
Q ss_pred eeEehhhhhhhHHHHhhhhcCc---HHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEE
Q psy15895 25 KHEFQAETRMLLDIVAKSLYSD---KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQ 101 (124)
Q Consensus 25 ~~~f~~ei~~~l~ll~~~~y~~---~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~ 101 (124)
.+..-.-++.+..- -.+|-. ..-.+.||+.||+|++.. +....|.|.+..++ .|+|.
T Consensus 9 ~i~~L~gle~vr~R--PgmYiGs~~~~~lv~ElvdNsiD~a~~---------------g~a~~I~V~i~~~g---~I~V~ 68 (390)
T 1s16_A 9 AIEVLTGLEPVRRR--PGMYTDTTRPNHLGQEVIDNSVDEALA---------------GHAKRVDVILHADQ---SLEVI 68 (390)
T ss_dssp GCEECCTTHHHHHC--GGGTSCTTSTHHHHHHHHHHHHHHHHT---------------TCCSEEEEEECTTS---CEEEE
T ss_pred HcEEcchhHHHhhC--CceeecCCcHHHHHHHHHHHHHHHHhc---------------CCCCEEEEEEecCC---EEEEE
Confidence 34444445544322 245632 244567799999998742 23466777665432 89999
Q ss_pred EcCCCCCHHH
Q psy15895 102 DSGIGMTKEE 111 (124)
Q Consensus 102 DnGiGM~~e~ 111 (124)
|||.|||.++
T Consensus 69 DnG~GIp~~~ 78 (390)
T 1s16_A 69 DDGRGMPVDI 78 (390)
T ss_dssp ECSSCCCCSB
T ss_pred ECCCCcCccc
Confidence 9999999887
No 49
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.68 E-value=2.3e-05 Score=64.12 Aligned_cols=47 Identities=23% Similarity=0.341 Sum_probs=34.4
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
.-.+.||+.||+|++.. .....|.|.+..+ . .|+|.|||.|||.++.
T Consensus 36 ~~lv~ElvdNsiDea~~---------------g~a~~I~V~i~~~--g-~I~V~DnG~GIp~~~~ 82 (391)
T 1ei1_A 36 HHMVFEVVDNAIDEALA---------------GHCKEIIVTIHAD--N-SVSVQDDGRGIPTGIH 82 (391)
T ss_dssp HHHHHHHHHHHHHHHHT---------------TCCCEEEEEECTT--S-CEEEEECSSCCCCSBC
T ss_pred HHHHHHHHHhHHHHHhc---------------CCCCEEEEEEeCC--C-EEEEEECCCCcccCcc
Confidence 34577899999998743 1235566666543 2 8999999999999873
No 50
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=97.65 E-value=3.9e-05 Score=58.35 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=34.0
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
-.+.|+|.||+|+... .....|.|.+..+ -.|+|.|||.|||.+..
T Consensus 38 ~lv~ElvdNsiDea~~---------------g~~~~I~V~i~~~---g~i~V~DnGrGIp~~~~ 83 (220)
T 4duh_A 38 HMVFEVVDNAIDEALA---------------GHCKEIIVTIHAD---NSVSVQDDGRGIPTGIH 83 (220)
T ss_dssp HHHHHHHHHHHHHHHH---------------SCCCEEEEEECTT---SCEEEEECSSCCCCSEE
T ss_pred HHHHHHHHHHHHHHhc---------------CCCCEEEEEEeCC---CcEEEEECCcCcccccc
Confidence 4577899999998764 2245666666543 27999999999999763
No 51
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.63 E-value=5.3e-05 Score=56.69 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=33.4
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
-.+.||+.||+|+... . ....|.|.+..++ .|+|.|||.|||.+.
T Consensus 34 ~~v~Elv~NsiD~~~a-g--------------~~~~I~V~i~~~g---~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 34 HLVWEIVDNSIDEALA-G--------------YANQIEVVIEKDN---WIKVTDNGRGIPVDI 78 (198)
T ss_dssp HHHHHHHHHHHHHHHT-T--------------SCCEEEEEEEGGG---EEEEEECSSCCCCSB
T ss_pred HHHHHHHHHHHhHHhc-C--------------CCcEEEEEEeCCC---eEEEEECCCCccccc
Confidence 3467899999887643 1 2456777776543 899999999999863
No 52
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=97.59 E-value=5.1e-05 Score=61.68 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=32.5
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
.+.||+.||+|++.. .....|.|.+..+ . .|+|+|||.|||.|.+
T Consensus 34 ~v~ElvdNsiDe~~~---------------g~a~~I~V~i~~~--g-~I~V~DnGrGIp~e~v 78 (369)
T 3cwv_A 34 LVYFLLDVAYEEARR---------------GECRDVVLEVGGD--G-SIALFCTSRTVTAENL 78 (369)
T ss_dssp HHHHHHHHHHHHHHT---------------TCCSEEEEEECTT--S-CEEEEEEESSCCHHHH
T ss_pred HHHHHHhhhHhHHhh---------------CCCCEEEEEEeCC--C-EEEEEECCCCcCHhHe
Confidence 467899999998743 1235566666543 3 8999999999998433
No 53
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=97.46 E-value=8.3e-05 Score=56.84 Aligned_cols=45 Identities=29% Similarity=0.428 Sum_probs=32.9
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
-.+.|++.||+|+... .....|.|.+..+ -.|+|.|||.|||.+.
T Consensus 43 ~~v~Eiv~NaiD~~~~---------------g~~~~I~V~i~~~---g~i~V~DnG~GIp~~~ 87 (226)
T 4emv_A 43 HLVWEIVDNAVDEALS---------------GFGDRIDVTINKD---GSLTVQDHGRGMPTGM 87 (226)
T ss_dssp HHHHHHHHHHHHHHHT---------------TCCSEEEEEECTT---SCEEEEECSSCCCCSB
T ss_pred HHHHHHHHHHHHHHhc---------------CCCcEEEEEEeCC---CeEEEEEcCCCccccc
Confidence 3467899999988753 1235566665433 2799999999999987
No 54
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.43 E-value=0.0002 Score=53.14 Aligned_cols=60 Identities=12% Similarity=0.191 Sum_probs=40.7
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc--CCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD--KQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~--~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
+.+|+.||.+|+...... ...+.+.|.+..+ ++...|.|.|+|+|++++.+ +.+++-|.+
T Consensus 110 lgnLi~na~~Ai~~~~~~-----------~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~-~~if~~~~~ 171 (192)
T 1ixm_A 110 LAKLMRKLFHLFDQAVSR-----------ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAF-DDIRQNGYE 171 (192)
T ss_dssp HHHHHHHHHHHHHHHBCT-----------TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGC-C--------
T ss_pred HHHHHHHHHHHHHhhhcc-----------CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHH-HHHHhCCCC
Confidence 455899999888643100 2467888988887 78999999999999999988 455544444
No 55
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=97.22 E-value=0.00032 Score=57.58 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=33.4
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
.+.||+.||+|+...-. ....|.|.+..++ ..|+|.|||.|||.+.
T Consensus 56 lv~EivdNsiDe~~~~g--------------~~~~I~V~i~~~~--~~I~V~DnGrGIPv~~ 101 (400)
T 1zxm_A 56 IFDEILVNAADNKQRDP--------------KMSCIRVTIDPEN--NLISIWNNGKGIPVVE 101 (400)
T ss_dssp HHHHHHHHHHHHHHHCT--------------TCCEEEEEEETTT--TEEEEEEESSCCCCSE
T ss_pred HHHHHHhhHHhHHhhcC--------------CCceEEEEEECCC--CEEEEEECCCcccCcc
Confidence 35679999999874212 2355666665543 5899999999999876
No 56
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=97.07 E-value=0.0005 Score=56.71 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=39.2
Q ss_pred ceeEehhhhhhhHHHHhhhhcCc---HHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEE
Q psy15895 24 EKHEFQAETRMLLDIVAKSLYSD---KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTI 100 (124)
Q Consensus 24 e~~~f~~ei~~~l~ll~~~~y~~---~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I 100 (124)
..|.+-.-++.+..- -.+|.. .--.+.|+|+||+|+... .....|.|.+.. + -.|+|
T Consensus 27 ~~I~vL~glE~VRkR--PgMYiGst~~~hlv~EivdNsiDea~a---------------g~~~~I~V~i~~--d-gsI~V 86 (408)
T 3lnu_A 27 ADIEVLSGLDPVKRR--PGMYTDTARPNHLAQEVIDNSVDEALA---------------GHAKQIEVTLYK--D-GSCEV 86 (408)
T ss_dssp -------CCHHHHHC--GGGTSCTTSTHHHHHHHHHHHHHHHHT---------------TSCCEEEEEECT--T-SCEEE
T ss_pred hHceeccccHHHhcC--CccEECCCCcchhhHHHHHHHHHHhhc---------------CCCceEEEEEeC--C-CeEEE
Confidence 334444344443222 245553 234567899999888643 123556666643 3 27999
Q ss_pred EEcCCCCCHHHH
Q psy15895 101 QDSGIGMTKEEL 112 (124)
Q Consensus 101 ~DnGiGM~~e~l 112 (124)
+|||.|||.+..
T Consensus 87 ~DnGrGIPv~~h 98 (408)
T 3lnu_A 87 SDDGRGMPVDIH 98 (408)
T ss_dssp EECSSCCCCSBC
T ss_pred EEcCCCCCcccc
Confidence 999999998763
No 57
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=96.75 E-value=0.003 Score=50.89 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=35.3
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e 110 (124)
+.+.||+.|| ++|..-. ..++.+.|++... ++.+.|+|.|+|.|++..
T Consensus 300 l~v~El~~Na------v~Ha~~~--------~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 300 HAISEFVENA------VEHGYAT--------DVSKGIVVAAALAGDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHH------HHHBCCS--------CCTTCEEEEEEECTTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHH------HHhcccC--------CCCceEEEEEEEcCCCEEEEEEEECCCCCCCC
Confidence 4578999999 8886311 2468899999887 568999999999999876
No 58
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=96.69 E-value=0.0027 Score=52.41 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=33.7
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
.+.|+|.||+|++..-. ....|.|.+..++ ..|+|.|||.|||.+..
T Consensus 68 lv~EivdNaiDe~~~~g--------------~~~~I~V~i~~d~--~sI~V~DnGrGIPv~~h 114 (418)
T 1pvg_A 68 IFDEILVNAADNKVRDP--------------SMKRIDVNIHAEE--HTIEVKNDGKGIPIEIH 114 (418)
T ss_dssp HHHHHHHHHHHHHHHCT--------------TCCEEEEEEETTT--TEEEEEEESSCCCCSBC
T ss_pred HHHHHHhCHHHHHHhcC--------------CCCEEEEEEECCC--CEEEEEECCCcccCccc
Confidence 46789999998874312 2456666665543 58999999999997764
No 59
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=91.67 E-value=0.28 Score=45.20 Aligned_cols=44 Identities=18% Similarity=0.446 Sum_probs=28.3
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e 110 (124)
+-|+|.||+|-... - .....|.|.+. .+.-.|+|+|||-|||-+
T Consensus 64 ~~EildNsiDea~a-g-------------~~~~~I~V~i~--~~d~sisV~DnGRGIPvd 107 (1177)
T 4gfh_A 64 FDEILVNAADNKVR-D-------------PSMKRIDVNIH--AEEHTIEVKNDGKGIPIE 107 (1177)
T ss_dssp HHHHHHHHHHHHHH-C-------------TTCCEEEEEEE--TTTTEEEEEECSSCCCCS
T ss_pred eeEEEEChHhHHhh-C-------------CCCCeEEEEEE--CCCCEEEEEecCCccccc
Confidence 45799999873322 0 11234555554 345679999999999854
No 60
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=64.58 E-value=2.5 Score=26.85 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=16.8
Q ss_pred CCCCHHHHHhhccccccCC
Q psy15895 105 IGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 105 iGM~~e~l~~~l~~i~~S~ 123 (124)
+||+++++...||+|..++
T Consensus 15 ~GmTk~qV~~lLG~P~~~~ 33 (88)
T 2yh9_A 15 VGMTQQQVAYALGTPLMSD 33 (88)
T ss_dssp TTCBHHHHHHHHCSCSEEC
T ss_pred CCCCHHHHHHHcCCCcccc
Confidence 8999999999999998654
No 61
>2km7_A Small protein A; BAME, SMPA, BAM complex, OMP85, YAET, cell membrane, cell OU membrane, lipoprotein, membrane, palmitate, membrane protei; NMR {Escherichia coli} PDB: 2kxx_A
Probab=62.54 E-value=3.6 Score=26.97 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.5
Q ss_pred CCCCCHHHHHhhccccccCC
Q psy15895 104 GIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 104 GiGM~~e~l~~~l~~i~~S~ 123 (124)
-+||+++++...||+|..++
T Consensus 28 ~~GmTk~qV~~lLG~P~~~~ 47 (102)
T 2km7_A 28 RVGMTQQQVAYALGTPLMSD 47 (102)
T ss_dssp CTTCBHHHHHHHHCCCCCCC
T ss_pred cCCCCHHHHHHhcCCCcccc
Confidence 38999999999999998764
No 62
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV}
Probab=53.61 E-value=6.8 Score=26.47 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=17.1
Q ss_pred CCCCHHHHHhhccccccCC
Q psy15895 105 IGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 105 iGM~~e~l~~~l~~i~~S~ 123 (124)
+||+++++...||+|..++
T Consensus 28 ~GMTk~QV~~lLGtP~~~~ 46 (118)
T 2pxg_A 28 VGQSKQQVSALLGTPSIPD 46 (118)
T ss_dssp CCSCHHHHHHHHTSCCCCC
T ss_pred CCCCHHHHHHHcCCCcccc
Confidence 7999999999999998765
No 63
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=29.00 E-value=1.3e+02 Score=20.07 Aligned_cols=33 Identities=3% Similarity=0.133 Sum_probs=27.9
Q ss_pred CCeEEEEEEEcCCceEEEEEEcCCC-----CCHHHHHh
Q psy15895 82 HGKLEIRISTDKQNRILTIQDSGIG-----MTKEELKS 114 (124)
Q Consensus 82 ~g~i~I~i~~~~~~~~I~I~DnGiG-----M~~e~l~~ 114 (124)
+..+++.+..+.+.+++.|.|...| ||++++.+
T Consensus 55 n~~L~F~vdee~~~~vVkVvD~~TgEVIRqIPpEe~L~ 92 (117)
T 2hc5_A 55 QVHLKFELHDKLNEYYVKVIEDSTNEVIREIPPKRWLD 92 (117)
T ss_dssp SCCEEEEEEEETTEEEEEEEETTTTEEEEEECHHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEEEeCChHHHHH
Confidence 4578999999999999999999988 68877654
Done!