RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15895
(124 letters)
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 176 bits (449), Expect = 4e-54
Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 22 NAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHD 81
E FQ+E + LL ++ SLYS+KE+F+RELISNASDA +KLR+ LS + D +
Sbjct: 3 GQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGE 62
Query: 82 HGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
L +R+S DK R LTI D+G+GMT++E+ +LGTIA+SG+
Sbjct: 63 ---LRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGT 102
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 174 bits (444), Expect = 5e-53
Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 22 NAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHD 81
E FQ+E + LL ++ SLYS+KE+F+RELISNASDA +KLR+ LS + D +
Sbjct: 3 GQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGE 62
Query: 82 HGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
L +R+S DK R LTI D+G+GMT++E+ +LGTIA+SG+
Sbjct: 63 ---LRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGT 102
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 166 bits (422), Expect = 9e-53
Identities = 60/121 (49%), Positives = 83/121 (68%), Gaps = 9/121 (7%)
Query: 9 HHYSTQAEA----ASNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEK 64
HH+S+ E ++ E H++Q E L+DI+ SLY+ KEVF+RELISNA+DALEK
Sbjct: 5 HHHSSGRENLYFQGPTESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEK 64
Query: 65 LRYNQLSEVMPFPTDHDHGK-LEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSG 123
+R+ LS+ + K LEIRIS +K+ IL+I D+GIGMTK +L +NLGTIA+SG
Sbjct: 65 IRFLSLSD----ESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLINNLGTIAKSG 120
Query: 124 S 124
+
Sbjct: 121 T 121
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A
{Escherichia coli}
Length = 235
Score = 163 bits (414), Expect = 5e-52
Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 6 NFNHHYSTQAEAASNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKL 65
+ +H + E FQ+E + LL ++ SLYS+KE+F+RELISNASDA +KL
Sbjct: 7 HHHHSSGLVPRGSHMKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKL 66
Query: 66 RYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
R+ LS + D + L +R+S DK R LTI D+G+GMT++E+ +LGTIA+SG+
Sbjct: 67 RFRALSNPDLYEGDGE---LRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGT 122
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone
inhibitor complex; HET: 7PP; 2.20A {Homo sapiens}
Length = 239
Score = 159 bits (405), Expect = 1e-50
Identities = 53/114 (46%), Positives = 75/114 (65%), Gaps = 5/114 (4%)
Query: 12 STQAEAASNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLS 71
+ + E FQAE L+ ++ + YS+KE+F+RELISNASDAL+K+RY L+
Sbjct: 5 MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLT 64
Query: 72 EVMPFPTDHDHGK-LEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
+ P+ D GK L+I I + Q R LT+ D+GIGMTK +L +NLGTIA+SG+
Sbjct: 65 D----PSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGT 114
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA,
NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus
familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A*
1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A*
1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Length = 236
Score = 158 bits (403), Expect = 2e-50
Identities = 47/107 (43%), Positives = 71/107 (66%), Gaps = 5/107 (4%)
Query: 19 SNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPT 78
+ +EK FQAE ++ ++ SLY +KE+F+RELISNASDAL+K+R L++
Sbjct: 5 LREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTD----EN 60
Query: 79 DHDHGK-LEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
+ L ++I DK+ +L + D+G+GMT+EEL NLGTIA+SG+
Sbjct: 61 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGT 107
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor
complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A*
2fwy_A* 2h55_A*
Length = 256
Score = 158 bits (402), Expect = 5e-50
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 5/114 (4%)
Query: 12 STQAEAASNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLS 71
TQ + + E FQAE L+ ++ + YS+KE+F+RELISN+SDAL+K+RY L+
Sbjct: 26 QTQDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLT 85
Query: 72 EVMPFPTDHDHGK-LEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
+ P+ D GK L I + +KQ+R LTI D+GIGMTK +L +NLGTIA+SG+
Sbjct: 86 D----PSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGT 135
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo
sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A*
1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A*
1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A*
2vci_A* ...
Length = 228
Score = 157 bits (399), Expect = 7e-50
Identities = 53/110 (48%), Positives = 76/110 (69%), Gaps = 5/110 (4%)
Query: 16 EAASNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMP 75
+ + E FQAE L+ ++ + YS+KE+F+RELISN+SDAL+K+RY L++
Sbjct: 2 QPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTD--- 58
Query: 76 FPTDHDHGK-LEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
P+ D GK L I + +KQ+R LTI D+GIGMTK +L +NLGTIA+SG+
Sbjct: 59 -PSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGT 107
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding,
phosphoprotein, stress respo nucleotide-binding; HET:
RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A*
2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A*
2ygf_A* 2akp_A
Length = 220
Score = 156 bits (398), Expect = 9e-50
Identities = 51/104 (49%), Positives = 74/104 (71%), Gaps = 5/104 (4%)
Query: 22 NAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHD 81
+E EFQAE L+ ++ ++YS+KE+F+RE++SNASDAL+K+RY LS+ P +
Sbjct: 2 ASETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSD----PKQLE 57
Query: 82 HGK-LEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
L IRI+ + ++L I+DSGIGMTK EL +NLGTIA+SG+
Sbjct: 58 TEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGT 101
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 157 bits (400), Expect = 1e-49
Identities = 47/105 (44%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Query: 21 DNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDH 80
+ +EK FQAE ++ ++ SLY +KE+F+RELISNASDAL+K+R L++
Sbjct: 3 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTD----ENAL 58
Query: 81 DHGK-LEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
+ L ++I DK+ +L + D+G+GMT+EEL NLGTIA+SG+
Sbjct: 59 AGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGT 103
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug
design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP:
d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Length = 264
Score = 157 bits (400), Expect = 1e-49
Identities = 53/114 (46%), Positives = 76/114 (66%), Gaps = 5/114 (4%)
Query: 12 STQAEAASNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLS 71
+ + E FQAE L+ ++ + YS+KE+F+RELISN+SDAL+K+RY L+
Sbjct: 34 WGSDQPMEEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLT 93
Query: 72 EVMPFPTDHDHGK-LEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
+ P+ D GK L I + +KQ+R LTI D+GIGMTK +L +NLGTIA+SG+
Sbjct: 94 D----PSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGT 143
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 164 bits (417), Expect = 6e-49
Identities = 50/117 (42%), Positives = 78/117 (66%), Gaps = 3/117 (2%)
Query: 8 NHHYSTQAEAASNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRY 67
+HH+S+ + +EK FQAE ++ ++ SLY +KE+F+RELISNASDAL+K+R
Sbjct: 7 HHHHSSGLVPRGSHMSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRL 66
Query: 68 NQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
L++ + + L ++I DK+ +L + D+G+GMT+EEL NLGTIA+SG+
Sbjct: 67 ISLTDENALAGNEE---LTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGT 120
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 151 bits (384), Expect = 2e-44
Identities = 54/103 (52%), Positives = 75/103 (72%), Gaps = 3/103 (2%)
Query: 22 NAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHD 81
+E EFQAE L+ ++ ++YS+KE+F+RELISNASDAL+K+RY LS+ T+ D
Sbjct: 2 ASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPD 61
Query: 82 HGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
L IRI+ + ++L I+DSGIGMTK EL +NLGTIA+SG+
Sbjct: 62 ---LFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGT 101
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics,
structura genomics consortium, SGC, stress response;
HET: AN2; 2.01A {Plasmodium falciparum}
Length = 272
Score = 136 bits (343), Expect = 5e-41
Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 33/154 (21%)
Query: 4 QPNFNHHYSTQAEAASNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALE 63
+ +H + EK+ F+AE ++DI+ SLY+DK+VF+RELISNASDA +
Sbjct: 5 HHHHHHSSGRENLYFQGSPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACD 64
Query: 64 KLRYNQLSE---------------------------------VMPFPTDHDHGKLEIRIS 90
K R + +D KL I+I
Sbjct: 65 KKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDKKENVEEEKNDIKKLIIKIK 124
Query: 91 TDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
DK+ + LTI D+GIGM K EL +NLGTIA+SG+
Sbjct: 125 PDKEKKTLTITDNGIGMDKSELINNLGTIAQSGT 158
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I
two-component histidine kinase, phosphoprotein; HET:
ADP; 2.03A {Geobacillus stearothermophilus}
Length = 244
Score = 40.6 bits (96), Expect = 3e-05
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 47 KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIG 106
++ + ++ NA +A MP + G L++ +S D ++ I D+G+G
Sbjct: 125 RQCLL-NVMKNAIEA------------MP-----NGGTLQVYVSIDNGRVLIRIADTGVG 166
Query: 107 MTKEELK 113
MTKE+L+
Sbjct: 167 MTKEQLE 173
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase,
two-component regulatory system; 1.57A {Thermotoga
maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Length = 152
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 18/67 (26%)
Query: 47 KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIG 106
K+V I L+ NA +A ++GK++I +++ +SG
Sbjct: 49 KQVLI-NLVQNAIEA------------TG-----ENGKIKITSEDMYTKVRVSVWNSGPP 90
Query: 107 MTKEELK 113
+ +E +
Sbjct: 91 IPEELKE 97
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase,
phosphoprotein, transfe two-component regulatory system;
3.80A {Thermotoga maritima}
Length = 349
Score = 37.6 bits (88), Expect = 3e-04
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 18/67 (26%)
Query: 47 KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIG 106
K+V I L+ NA +A ++GK++I +++ +SG
Sbjct: 246 KQVLI-NLVQNAIEA------------TG-----ENGKIKITSEDMYTKVRVSVWNSGPP 287
Query: 107 MTKEELK 113
+ +E +
Sbjct: 288 IPEELKE 294
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.001
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 17/119 (14%)
Query: 1 LLVQPNFNHHYSTQAEAASNDNAEKH-EF--QAETRMLLD-IVAKSLYSDKEVFIRELIS 56
+ +P S A NA+ F Q T + + + LY V + +LI
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL--RDLYQTYHVLVGDLIK 189
Query: 57 NASDALEKLRYNQLSEVMPFPTDHDHGK-----LEIRISTDKQNRILTIQDS--GIGMT 108
+++ L +L + + G LE +T ++ +L+I S IG+
Sbjct: 190 FSAETLSEL----IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Score = 33.9 bits (77), Expect = 0.010
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 26/123 (21%)
Query: 11 YSTQAEAASN--DNAEKHEFQAETRMLLDIV---------------AKSLYSDKEVFIRE 53
Y T ++AA + + A+ H +LDIV K + + I E
Sbjct: 1636 YKT-SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 54 LISNASDALEKLRYNQLSEVMPFPT-DHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112
I + EK+ + +++E T + G L T Q + + E+L
Sbjct: 1695 TIVDGKLKTEKI-FKEINEHSTSYTFRSEKGLLSATQFT--QPALTLM---EKAAF-EDL 1747
Query: 113 KSN 115
KS
Sbjct: 1748 KSK 1750
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 530
Score = 35.9 bits (82), Expect = 0.002
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRI-LTIQDSGIGMTK 109
+RELI N+ L + ++P + K+ I + D + + + D+GIG+
Sbjct: 36 VRELIENS------LDATDVHGILP------NIKITIDLIDDARQIYKVNVVDNGIGIPP 83
Query: 110 EELKSNLGTIARS 122
+E+ + G + S
Sbjct: 84 QEVPNAFGRVLYS 96
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
two-turns helix; 2.00A {Sulfolobus shibatae} SCOP:
a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A*
1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Length = 471
Score = 33.6 bits (76), Expect = 0.010
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRI-LTIQDSGIGMTK 109
+RELI N+ L + ++P + K+ I + D + + + D+GIG+
Sbjct: 37 VRELIENS------LDATDVHGILP------NIKITIDLIDDARQIYKVNVVDNGIGIPP 84
Query: 110 EEL 112
+E+
Sbjct: 85 QEV 87
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase;
transferase, mitochondrial protein kinase, potassium;
HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1
d.122.1.4 PDB: 1gjv_A 1gkx_A*
Length = 388
Score = 32.3 bits (73), Expect = 0.028
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110
+ EL+ NA A + + +P + I I+ + + I+ I D G G+ +
Sbjct: 243 LPELLKNAMRATME-SHLDTPYNVP--------DVVITIANNDVDLIIRISDRGGGIAHK 293
Query: 111 ELK 113
+L
Sbjct: 294 DLD 296
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat
fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Length = 177
Score = 31.9 bits (73), Expect = 0.032
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 19/62 (30%)
Query: 54 LISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNR--ILTIQDSGIGMTKEE 111
+ISNA L+Y+ + G + I +++ ++++D GIG+ K++
Sbjct: 51 IISNA------LKYS-----------PEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKD 93
Query: 112 LK 113
++
Sbjct: 94 VE 95
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl
MAD, two-component systems, transferase; HET: ADP; 1.9A
{Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB:
3dge_A*
Length = 258
Score = 31.3 bits (72), Expect = 0.049
Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 14/60 (23%)
Query: 54 LISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELK 113
L++N ++Y+ D +++ + ++ ++D+GIG+
Sbjct: 146 LLNNG------VKYS--------KKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKD 191
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate
dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED
ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB:
1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Length = 419
Score = 31.3 bits (70), Expect = 0.054
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110
+ EL N+ A + Y E P ++ ++ K++ + I D G G+
Sbjct: 258 LFELFKNSMRATVE-LYEDRKEGYP--------AVKTLVTLGKEDLSIKISDLGGGVPLR 308
Query: 111 ELK 113
++
Sbjct: 309 KID 311
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL
ATPase/kinase family, pyruvate dehydrogenase complex,
mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens}
PDB: 2q8f_A* 2q8h_A
Length = 407
Score = 31.3 bits (70), Expect = 0.067
Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110
+ EL NA +R + + +++ ++ ++ + + D G G+
Sbjct: 248 VFELFKNA------MRAT----MEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLR 297
Query: 111 ELK 113
++
Sbjct: 298 KID 300
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma,
sporulation, serine kinase, transcription; HET: ADP;
2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3
PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Length = 145
Score = 28.8 bits (65), Expect = 0.30
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 79 DHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111
+ +G + I + + LT++D G+G+ E
Sbjct: 58 NDPNGIVSISVIIEDGVVHLTVRDEGVGIPDIE 90
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation,
transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A*
2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Length = 394
Score = 29.0 bits (64), Expect = 0.33
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110
+ EL NA +R S + +++ ++ +++ + + D G G+
Sbjct: 236 LFELFKNA------MRATVESHE----SSLILPPIKVMVALGEEDLSIKMSDRGGGVPLR 285
Query: 111 ELK 113
+++
Sbjct: 286 KIE 288
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.50
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 6 NFNHHYSTQAEA--ASNDNAEKHEFQAE 31
+N S Q E +N A+K F +
Sbjct: 122 EWNQRQSEQVEKNKINNRIADK-AFYQQ 148
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 28.6 bits (63), Expect = 0.54
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 13/72 (18%)
Query: 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110
++E + NA DA E+ V T D+ + I+D+G G+ +E
Sbjct: 42 VKEAVDNALDACEEAGILPDILVQVERTGPDY-------------VTVIIEDNGPGIVRE 88
Query: 111 ELKSNLGTIARS 122
++ +
Sbjct: 89 QIPKVFAKLLYG 100
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory
system, hiska GHKL domain, structural genomics; 2.50A
{Caulobacter crescentus}
Length = 268
Score = 27.9 bits (63), Expect = 0.73
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 80 HDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112
G++ + L + D+G G+
Sbjct: 172 PPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQ 204
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase;
HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB:
3cgz_A 3cgy_A
Length = 152
Score = 27.6 bits (62), Expect = 0.80
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 80 HDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112
+ +EI ++ + ++D G G+ +
Sbjct: 59 YCLEFVEISARQTDEHLYIVVEDDGPGIPLSKR 91
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ));
histidine kinase, osmosensor, His-Asp phosphorelay
system, signal transduction; HET: ANP; NMR {Escherichia
coli BL21} SCOP: d.122.1.3
Length = 161
Score = 27.6 bits (62), Expect = 0.88
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 19/60 (31%)
Query: 54 LISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELK 113
++ NA RY +G +++ T+ ++D G G+ E+ K
Sbjct: 55 MVVNA------ARYG-------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRK 95
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two
component system, transfera; 1.60A {Escherichia coli}
SCOP: d.122.1.3
Length = 160
Score = 27.1 bits (61), Expect = 1.1
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 26/67 (38%)
Query: 54 LISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRI----------LTIQDS 103
++ NA AL + G++ +R T Q + + ++D+
Sbjct: 56 IVRNALQALGP----------------EGGEIILRTRTAFQLTLHGERYRLAARIDVEDN 99
Query: 104 GIGMTKE 110
G G+
Sbjct: 100 GPGIPPH 106
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding,
structural genomics, NPPSFA, NATI project on protein
structural and functional analyses; HET: ANP; 1.86A
{Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Length = 394
Score = 27.4 bits (60), Expect = 1.4
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110
+ EL NA A + + NQ S +E+ + K++ + I D G G+
Sbjct: 235 LFELFKNAMRATVEHQENQPSL----------TPIEVIVVLGKEDLTIKISDRGGGVPLR 284
Query: 111 ELK 113
+
Sbjct: 285 IID 287
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 2.2
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 23/113 (20%)
Query: 2 LVQPNFNHHYSTQAEAASNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIR------ELI 55
+++ N Y + + TRM ++ + LY+D +VF + +
Sbjct: 86 VLRIN----YKFLMSPIKTEQRQP---SMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPY 137
Query: 56 SNASDALEKLRYNQLSEV--MP-FPTDHDHGKLEIRISTDKQNRILTIQDSGI 105
AL +LR + + + GK + + ++ D I
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGS------GKTWVALDVCLSYKVQCKMDFKI 184
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding,
cell inner MEM cell membrane, kinase, membrane,
nucleotide-binding; 2.50A {Escherichia coli}
Length = 222
Score = 26.0 bits (58), Expect = 3.3
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 21/62 (33%)
Query: 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110
+R L+ NA +RY+ +++ ++ D ++D+G G+T E
Sbjct: 122 VRNLLDNA------VRYSP-----------QGSVVDVTLNADN----FIVRDNGPGVTPE 160
Query: 111 EL 112
L
Sbjct: 161 AL 162
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 25.7 bits (57), Expect = 4.3
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 30 AETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKL-EIR 88
+T L++ VAK +K+ +E+ +AL+ ++M +H L ++
Sbjct: 203 KKTAELVNEVAK--IENKDEIFKEIDKVIDEALKIKNKEDFGKLM----TKNHELLKKLN 256
Query: 89 ISTDKQNRILTI-QDSGIG--MT 108
IST K +RI+ I G G +T
Sbjct: 257 ISTPKLDRIVDIGNRFGFGAKLT 279
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural
genomics, mycobacterium tuberculosis structural
proteomics project; 1.78A {Mycobacterium tuberculosis}
SCOP: d.122.1.3 PDB: 1ys3_A
Length = 150
Score = 25.3 bits (56), Expect = 4.5
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 18/59 (30%)
Query: 54 LISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112
I+NA +++ + V ++ + + + I D+G G+ + E
Sbjct: 54 AIANA------VKHGGATLV------------QLSAVSSRAGVEIAIDDNGSGVPEGER 94
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 25.1 bits (55), Expect = 7.2
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 30 AETRMLLDIVAKSLYSDKEVF------IRELISNASDALEKLRYNQLSEVMPFPTDHDHG 83
A T +++ V K F ++S A +AL+K +L ++M + +H
Sbjct: 199 ASTAKVVNDVHKMKQQQPVQFKRLYDNYTHIVSQAREALQKGDLQRLGQLM----NANHD 254
Query: 84 KLE-IRISTDK 93
I +S +
Sbjct: 255 LCRQIDVSCRE 265
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.344
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,799,202
Number of extensions: 97366
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 44
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)