RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15895
(124 letters)
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId:
9615]}
Length = 227
Score = 114 bits (287), Expect = 1e-33
Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 3/101 (2%)
Query: 24 EKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHG 83
EK FQAE ++ ++ SLY +KE+F+RELISNASDAL+K+R L++ +
Sbjct: 1 EKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTD---ENALAGNE 57
Query: 84 KLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
+L ++I DK+ +L + D+G+GMT+EEL NLGTIA+SG+
Sbjct: 58 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGT 98
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 213
Score = 103 bits (257), Expect = 3e-29
Identities = 54/102 (52%), Positives = 75/102 (73%), Gaps = 3/102 (2%)
Query: 23 AEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDH 82
+E EFQAE L+ ++ ++YS+KE+F+RELISNASDAL+K+RY LS+ T+ D
Sbjct: 2 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPD- 60
Query: 83 GKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
L IRI+ + ++L I+DSGIGMTK EL +NLGTIA+SG+
Sbjct: 61 --LFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGT 100
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 102 bits (254), Expect = 7e-29
Identities = 49/100 (49%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
Query: 24 EKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHG 83
E FQAE L+ ++ + YS+KE+F+RELISN+SDAL+K+RY L++ + +
Sbjct: 2 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKE-- 59
Query: 84 KLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSG 123
L I + +KQ+R LTI D+GIGMTK +L +NLGTIA+SG
Sbjct: 60 -LHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSG 98
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 219
Score = 33.3 bits (75), Expect = 0.004
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 27 EFQAETRMLL--DIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGK 84
EF L A++LY +RELI N+ DA + ++ D
Sbjct: 5 EFFKRNPELAGFPNPARALYQ----TVRELIENSLDATDVHGILPNIKITIDLIDDARQI 60
Query: 85 LEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121
++ + D+GIG+ +E+ + G +
Sbjct: 61 YKV-----------NVVDNGIGIPPQEVPNAFGRVLY 86
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor
EnvZ {Escherichia coli [TaxId: 562]}
Length = 161
Score = 32.2 bits (73), Expect = 0.009
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 79 DHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELK 113
+ +G +++ T+ ++D G G+ E+ K
Sbjct: 61 RYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRK 95
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat
(Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Length = 190
Score = 30.8 bits (69), Expect = 0.024
Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110
+ EL NA A + + L+ ++I ++ +++ + + D G G+
Sbjct: 65 LFELFKNAMRATVESHESSLTL----------PPIKIMVALGEEDLSIKMSDRGGGVPLR 114
Query: 111 ELK 113
+++
Sbjct: 115 KIE 117
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 30.3 bits (67), Expect = 0.026
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110
+ EL N+ A +L ++ T GK ++ I I D G G+
Sbjct: 69 LFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIK---------ISDLGGGVPLR 119
Query: 111 ELK 113
++
Sbjct: 120 KID 122
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 148
Score = 28.7 bits (64), Expect = 0.13
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 80 HDHGKLEIRISTDKQNRILTIQDSGIGMTKEELK 113
+++ + + + I D+G G+ + E +
Sbjct: 60 GGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQ 93
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 27.6 bits (61), Expect = 0.36
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 14/60 (23%)
Query: 54 LISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELK 113
L++N +K D +++ + ++ ++D+GIG+
Sbjct: 57 LLNNGVKYSKK--------------DAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKD 102
>d1qexa_ b.32.1.1 (A:) gp9 {Bacteriophage T4 [TaxId: 10665]}
Length = 288
Score = 24.8 bits (54), Expect = 3.0
Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 3 VQPNFNHHYSTQAEAASNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDAL 62
+ ++ + + + K + AE +L+D V + S + +R D +
Sbjct: 191 LFHRTEYNMAKLLVTCQSVDGRKIK-TAEINILVDTVNSEVISSEYAVMRVGNETEEDEI 249
Query: 63 EKLRY 67
+ +
Sbjct: 250 ANIAF 254
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase,
central domain {Archaeon Sulfolobus solfataricus, km1
[TaxId: 2287]}
Length = 400
Score = 25.0 bits (53), Expect = 3.6
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 60 DALEKLRYN--QLSEVMPFPTDHDHG 83
D L+ L ++ + FP D G
Sbjct: 36 DYLKDLGITAIEIMPIAQFPGKRDWG 61
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 24.4 bits (52), Expect = 4.8
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 20/61 (32%)
Query: 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110
++EL+ N+ DA +++++ + I + D+G G+ +E
Sbjct: 11 VKELVENSLDA-------------------GATNIDLKLKDYGVDLI-EVSDNGCGVEEE 50
Query: 111 E 111
Sbjct: 51 N 51
>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 23.6 bits (51), Expect = 5.6
Identities = 4/50 (8%), Positives = 13/50 (26%)
Query: 15 AEAASNDNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEK 64
++ +K + + L + I + + + K
Sbjct: 31 YAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVAK 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.128 0.344
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 415,376
Number of extensions: 16492
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 16
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)