RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15896
(492 letters)
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 386 bits (994), Expect = e-128
Identities = 154/497 (30%), Positives = 254/497 (51%), Gaps = 62/497 (12%)
Query: 1 SGTYEITECPTAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVNDNQTNKI 60
G Y I E E+GT+I +HLK D EF DE + ++I+KYS+F+ PI + + I
Sbjct: 157 EGEYTIEEIEKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEKEEEETI 216
Query: 61 QPLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTGNLPLWIMEPKSVKLEEHVEFY 120
N LW + EE+ EFY
Sbjct: 217 --------------------------NSAS-----------ALWTRSKSEITDEEYKEFY 239
Query: 121 RYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKPGLFEMSRETEVGVSLYTRRILIKAK 180
+++++ D P F +H + P +LY P+ P +R+ + G+ LY +R+ I
Sbjct: 240 KHLAHDFDDPLFWIHNNVEGPFEYTGLLYIPKKAPFDL-FNRDRKGGLKLYVKRVFIMDD 298
Query: 181 AENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLRNVLTTRILKFLQDRSKRDVE 240
AE +LP++LRFVKGV+DSED+PLN+SRE+LQ ++ K+R +T ++L L+ +K D E
Sbjct: 299 AEELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLDELEKLAKNDRE 358
Query: 241 NYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQEAGTLITLPEYIEKLGEGQK 300
Y F+K++ +KEG+ D +E++AKLLR+ S+ G ++L EY+E++ EGQK
Sbjct: 359 KYEKFWKEFGPVLKEGLYE--DFANREKLAKLLRFAST--HEGKYVSLAEYVERMKEGQK 414
Query: 301 DIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDELILLQLRSFQNFNLTSVEK--- 357
IYY+ SR A +SP+LE +++ ++VL +P DE + L F SV +
Sbjct: 415 KIYYITGDSREAAKNSPHLELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDL 474
Query: 358 EMRQDKEEDKSGQILGPDSLPSSDADKLVSWIEEKMKNKVHSVKITTKLDSHPCVVTVEE 417
++ ++ EE+K + + L+ ++E + +KV V+++ +L P + +E
Sbjct: 475 DLGKEDEEEKEEKEEAEEEF-----KPLLERLKEALGDKVKDVRLSHRLTDSPACLVADE 529
Query: 418 ---MAAARHFLKTQSQNLNEEQRFSLLQPRLEINPKHPVIKKLASLSSSNPALAELVVQQ 474
LK Q + E +P LEINP HP++KKLA ++ A + + +
Sbjct: 530 GDMSTQMEKLLKAAGQEVPES------KPILEINPNHPLVKKLADE--ADEAKFKDLAEL 581
Query: 475 LFSNAMVVAGL-VEDPR 490
L+ A++ G +EDP
Sbjct: 582 LYDQALLAEGGSLEDPA 598
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 301 bits (774), Expect = 1e-95
Identities = 146/496 (29%), Positives = 243/496 (48%), Gaps = 49/496 (9%)
Query: 1 SGTYEITECPTAE-KGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVNDNQTNK 59
G Y + + +GT+I +HLK + EF +E + +++KYS+ + PI++
Sbjct: 156 EGEYTVEDIDKEPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYI------- 208
Query: 60 IQPLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTGNLPLWIMEPKSVKLEEHVEF 119
+E E N LW + EE+ EF
Sbjct: 209 -----------EGEKEKDEEVIEWETINKAK-----------ALWTRNKSEITDEEYKEF 246
Query: 120 YRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKP-GLFEMSRETEVGVSLYTRRILIK 178
Y+++++ D P +H + + L ++L+ P P LF R+ + G+ LY R+ I
Sbjct: 247 YKHLAHDFDDPLLWIHNKVEGRLEYTALLFIPSKAPFDLF--RRDRKRGLKLYVNRVFIM 304
Query: 179 AKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLRNVLTTRILKFLQDRSKRD 238
AE++LP +LRFV+GV+DSED+PLN+SRE+LQ + ++ +R LT ++L L+ +K D
Sbjct: 305 DDAEDLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKALTKKVLSMLEKLAKDD 364
Query: 239 VENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQEAGTLITLPEYIEKLGEG 298
E Y F+K + L +KEG+ +D KE++ LLR+ S+ ++L EY+ ++ EG
Sbjct: 365 PEKYRKFWKQFGLVLKEGLY--EDFENKEKLLDLLRFRSTSDSGEKTVSLEEYVSRMKEG 422
Query: 299 QKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDELILLQLRSFQNFNLTSVEKE 358
QK IYY+ S A SP+LE + + ++VL + DE +L L F+ S+ K
Sbjct: 423 QKQIYYITGESYQAAKGSPHLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKG 482
Query: 359 MRQDKEEDKSGQILGPDSLPSSDADKLVSWIEEKMKNKVHSVKITTKLDSHPCVVTVEEM 418
D E + + L+ ++E + +KV V+++ +L P +T +
Sbjct: 483 -DLDLELLEEEDEADSEEEKKEFKP-LLERVKEILGDKVKDVRLSHRLTDSPACLTTDGA 540
Query: 419 ---AAARHFLKTQSQNLNEEQRFSLLQPRLEINPKHPVIKKLASLSSSNPALAELVVQQL 475
LK Q Q + E + LEINP HP++KKLASL + A +V+ L
Sbjct: 541 DLSTQMERLLKAQGQEVPES------KKILEINPNHPLVKKLASL--EDEASVADLVELL 592
Query: 476 FSNAMVVAGL-VEDPR 490
+ A++ G +EDP
Sbjct: 593 YDQALLAEGGPLEDPA 608
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 221 bits (564), Expect = 2e-64
Identities = 146/511 (28%), Positives = 270/511 (52%), Gaps = 33/511 (6%)
Query: 2 GTYEITECPTAE--KGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFV------- 52
GT+ IT P ++ +GT+I +HLK D E+ + + + +I+K+S F+ I +
Sbjct: 153 GTFTITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTE 212
Query: 53 -----NDNQTNKIQPLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTGNLPLWIME 107
D + K EPK +++E E + + + + + PLW +
Sbjct: 213 KEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRD 272
Query: 108 PKSVKLEEHVEFYRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKP-GLFEMSRETEV 166
PK V EE+ FY+ ISN + P H+ + L +S+++ P+ P +FE +++
Sbjct: 273 PKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEPNKKRN- 331
Query: 167 GVSLYTRRILIKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLRNVLTTR 226
+ LY RR+ I E++ P WL FVKGVVDSED+PLN+SRE LQ + ++ +R + +
Sbjct: 332 NIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKK 391
Query: 227 ILKFLQDRSKRDVENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQEAGTLI 286
L+ + ++ + E+Y FY+ + IK GI +D ++++ +LLR+ S+E +
Sbjct: 392 CLEMFDEVAE-NKEDYKQFYEQFGKNIKLGI--HEDTANRKKLMELLRFYSTES-GEEMT 447
Query: 287 TLPEYIEKLGEGQKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDELILLQLRS 346
TL +Y+ ++ GQK IYY+ S+ +SP++E R R ++VLF EP DE ++ Q++
Sbjct: 448 TLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKD 507
Query: 347 FQNFNLTSVEKE--MRQDKEEDKSGQILGPDSLPSSDADKLVSWIEEKMKNKVHSVKITT 404
F++ + KE ++ EE+K + + +KL ++E + +KV V ++
Sbjct: 508 FEDKKFACLTKEGVHFEESEEEKQQR-----EEEKAACEKLCKTMKEVLGDKVEKVIVSE 562
Query: 405 KLDSHPCVVTVEEMAAARHF---LKTQSQNLNEEQRFSLLQPRLEINPKHPVIKKLASL- 460
+L + PC++ E + H ++ Q+ + ++ + + +E+NP+HP+IK+L
Sbjct: 563 RLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRV 622
Query: 461 -SSSNPALAELVVQQLFSNAMVVAGL-VEDP 489
+ N + +V LF +++ +G +EDP
Sbjct: 623 GADENDKAVKDLVFLLFDTSLLTSGFQLEDP 653
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 215 bits (549), Expect = 1e-63
Identities = 129/401 (32%), Positives = 227/401 (56%), Gaps = 23/401 (5%)
Query: 102 PLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKP-GLFEM 160
P+W PK V EE+ FY+ ++N + P V H+ + L +++L+ P+ P LFE
Sbjct: 92 PIWTRNPKDVTKEEYAAFYKSLTNDWEDPLAVKHFSVEGQLEFRAILFVPKRAPFDLFE- 150
Query: 161 SRETEVGVSLYTRRILIKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLR 220
S + + + LY RR+ I E+++P++L FVKGVVDSED+PLN+SRE+LQ + ++ +R
Sbjct: 151 SYKKKNNIKLYVRRVFIMDDCEDLIPEYLSFVKGVVDSEDLPLNISREMLQQNKILKVIR 210
Query: 221 NVLTTRILKFLQDRSKRDVENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQ 280
L + L+ + ++ D E Y FY+++S IK GI +D + ++AKLLR+ES++
Sbjct: 211 KNLVKKCLEMFNEIAE-DKEQYKKFYEEFSKNIKLGIH--EDAANRAKLAKLLRFESTKS 267
Query: 281 EAGTLITLPEYIEKLGEGQKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDELI 340
L +L +Y+ ++ EGQKDIYY+ S+ SP+LE L+++ +VL+ +P DE
Sbjct: 268 G-DELTSLDDYVTRMKEGQKDIYYITGESKKQVEKSPFLERLKKKGYEVLYMTDPIDEYA 326
Query: 341 LLQLRSFQNFNLTSVEKE---MRQDKEEDKSGQILGPDSLPSSDADKLVSWIEEKMKNKV 397
+ QL+ F+ L +V KE + + +EE K + L + ++L W+++ + +KV
Sbjct: 327 MQQLKEFEGKKLVNVTKEGLKLEESEEEKKKREEL------KKEFEELCKWMKDILGDKV 380
Query: 398 HSVKITTKLDSHPCVVTVEEM---AAARHFLKTQSQNLNEEQRFSLLQPRLEINPKHPVI 454
V ++ +L PC + + A +K Q+ + + + LEINP+HP+I
Sbjct: 381 EKVVVSNRLVDSPCALVTSQYGWSANMERIMKAQALRDSSMSAYMSSKKTLEINPRHPII 440
Query: 455 KKL---ASLSSSNPALAELVVQQLFSNAMVVAG-LVEDPRT 491
K+L ++ + +L + L+ A++ +G +EDP+
Sbjct: 441 KELRKRVEADKNDKTVKDL-ARLLYETALLTSGFSLEDPKA 480
>gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional.
Length = 814
Score = 170 bits (431), Expect = 1e-45
Identities = 136/533 (25%), Positives = 247/533 (46%), Gaps = 83/533 (15%)
Query: 11 TAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFV------NDNQTNKIQPLW 64
T ++GT+I +HLK D +++ ++++I KYS F+ PI++ + I
Sbjct: 229 TLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEM 288
Query: 65 IMEPK--SVKLEEHVEFYRYISNSNDQPRFV------LHYRTGNLPLWIMEPKSVKLEEH 116
+P SVK+EE + N + R V P+W+ PK + E++
Sbjct: 289 ENDPNYDSVKVEET-------DDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDY 341
Query: 117 VEFYRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKPGLFEMSRETEVGVSLYTRRIL 176
+F+ +S ND+P + +H+ + + K ++Y P P + + + + LY RR+L
Sbjct: 342 KKFFSVLSGFNDEPLYHIHFFAEGEIEFKCLIYIPSRAPSINDHLFTKQNSIKLYVRRVL 401
Query: 177 IKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLRNVLTTRILKFLQD--- 233
+ + LP+++ FVKGVVDS+D+PLN+SRE LQ NK+ ++ RI++ + D
Sbjct: 402 VADEFVEFLPRYMSFVKGVVDSDDLPLNVSREQLQQ----NKILKAVSKRIVRKILDTFR 457
Query: 234 -------RSKRDVENYLA-----------------------FYKDYSLFIKEGIVTTQDV 263
++K + LA YK+Y ++K G +D
Sbjct: 458 TLYKEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCY--EDD 515
Query: 264 HEKEEIAKLLRYESSEQEAGTLITLPEYIEKLGEGQKDIYYLCAPSRALALSSPYLEALR 323
+ +I KLL +++ I+L YIE + QK IYY S P L+ +
Sbjct: 516 INRNKIVKLLLFKTMLHPKS--ISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFK 573
Query: 324 ERKVQVLFCYEPHDELILLQLRSFQNFNLTSVEK-----EMRQD--KEEDKSGQILGPDS 376
++ + V+F E DE + +++ + S++K E+ +D K+E+K ++
Sbjct: 574 KKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITFELTEDEKKKEEKVKKMY---- 629
Query: 377 LPSSDADKLVSWIEEKMKNKVHSVKITTKLDSHPCVVTVEEMAAARHFLKTQSQNLNEEQ 436
L+ I + ++N++ V+I+ +L PC V E + K N+N
Sbjct: 630 ------KALIDVISDTLRNQIFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINVNNSD 683
Query: 437 RFSLL--QPRLEINPKHPVIKKLASLSSSNPALAELV--VQQLFSNAMVVAGL 485
+ + Q LEINP HP++ L S SNP ++L ++ ++ +A + +G
Sbjct: 684 QIKAMSGQKILEINPDHPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGF 736
>gnl|CDD|237603 PRK14083, PRK14083, HSP90 family protein; Provisional.
Length = 601
Score = 44.9 bits (107), Expect = 7e-05
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 2 GTYEITECPT--AEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVNDNQ--T 57
GTY + + T AE GT + + + D E+ + +TV + +KY + + PI V +
Sbjct: 142 GTYSVRKLETERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGEKGGV 201
Query: 58 NKIQPLWIMEPKSVKLEEHVEFYRY 82
N+ P W + Y
Sbjct: 202 NETPPPWTRDYPD-PETRREALLAY 225
Score = 40.3 bits (95), Expect = 0.002
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 171 YTRRILIKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLRNVLTTRILKF 230
Y +R+L+ +AEN+LP W FV+ VV+++++ SRE L + +R L I K+
Sbjct: 269 YLKRMLLSEEAENLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVREELGEAIRKW 328
Query: 231 LQ 232
L
Sbjct: 329 LI 330
Score = 28.8 bits (65), Expect = 7.7
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 443 PRLEINPKHPVIKKLASLSSSNPALAELVVQQLFSNAM 480
RL +N ++P++++LA+L +P L V+ L+ A+
Sbjct: 531 ARLVLNLRNPLVRRLATL--GDPKLLSRAVEALYVQAL 566
>gnl|CDD|132846 cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus
to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is
a potent virulence factor of Pseudomonas aeruginosa. One
of the pathogenic mechanisms of P. aeruginosa is to
induce cytotoxicity by the injection of effector
proteins (e.g. ExoU) using the type III secretion (T3S)
system. ExoU is homologus to patatin and also has the
conserved catalytic residues of mammalian
calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2.
In vitro, ExoU cytotoxity is blocked by the inhibitor of
cytosolic and Ca2-independent phospholipase A2 (cPLA2
and iPLA2) enzymes, suggesting that phospholipase A2
inhibitors may represent a novel mode of treatment for
acute P. aeruginosa infections. ExoU requires eukaryotic
superoxide dismutase as a cofactor and cleaves
phosphatidylcholine and phosphatidylethanolamine in
vitro. VipD, a 69-kDa cytosolic protein, belongs to the
members of Legionella pneumophila family and is
homologus to ExoU from Pseudomonas. Even though VipD
shows high sequence similarity with several functional
regions of ExoU (e.g. oxyanion hole, active site serine,
active site aspartate), it has been shown to have no
phospholipase activity. This family includes ExoU from
Pseudomonas aeruginosa and VipD of Legionella
pneumophila.
Length = 194
Score = 32.3 bits (74), Expect = 0.35
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 20/101 (19%)
Query: 357 KEMRQDKEEDKSGQILGPDSLPS-------SDADKLVSWIEEKMKNKVHSVKITTKLDSH 409
KE K D +L LPS D L W+ E +K K + T+ L
Sbjct: 58 KETDFAKLLDSPVGLLF--LLPSLFKEGGLYKGDALEEWLRELLKEKTGNSFATSLLRDL 115
Query: 410 PCVVTVEEMAAARHFLKTQSQNLNEEQ--RFS-LLQPRLEI 447
+ + LK + +L FS P + +
Sbjct: 116 DDDLGKD--------LKVVATDLTTGALVVFSAETTPDMPV 148
>gnl|CDD|220990 pfam11124, Pho86, Inorganic phosphate transporter Pho86. Pho86p is
an ER protein which is produced in response to phosphate
starvation. It is essential for growth when phosphate
levels are limiting. Pho86p is also involved in the
regulation of Pho84p, a high-affinity phosphate
transporter which is localised to the endoplasmic
reticulum (ER) in low phosphate medium. When the level
of phosphate increases Pho84p is transported to the
vacuole. Pho86p is required for packaging of Pho84p in
to COPII vesicles.
Length = 296
Score = 31.2 bits (71), Expect = 1.2
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 76 HVEFYRYISNSNDQPRFVLHYRTGNLPLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLH 135
+ I+ QP++ NL + PKS + + + N+ ++
Sbjct: 122 VSDELFKIAIKLVQPKYGEQIFGFNLKDYASLPKSEETNKPRKLTENGKNT-----HIIV 176
Query: 136 YRTDAPLSIKSVL-YFPETKPGLFEMSRETEVGVSLYTRRILIKAKAENILPKW 188
YR D P+++ SV+ + F M T +GV RR+ +K+ + L W
Sbjct: 177 YR-DTPIAVISVVPNLVLSTKDNFVMKI-TGLGV----RRVYVKSDIDEDLIDW 224
>gnl|CDD|222158 pfam13474, SnoaL_3, SnoaL-like domain. This family contains a
large number of proteins that share the SnoaL fold.
Length = 121
Score = 29.6 bits (67), Expect = 1.6
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 235 SKRDVENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLR 274
++ D++ Y A + D FI G + +E + LR
Sbjct: 13 AEGDLDAYFALFADDVSFI--GTGADELWRGREAVRAYLR 50
>gnl|CDD|147982 pfam06112, Herpes_capsid, Gammaherpesvirus capsid protein. This
family consists of several Gammaherpesvirus capsid
proteins. The exact function of this family is unknown.
Length = 148
Score = 29.8 bits (67), Expect = 1.8
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 442 QPRLE-INPKHPVIKKLASLSSSNPALAELVVQQL 475
Q RLE P HP++ +L +L +N + AE +
Sbjct: 12 QGRLEEDYPNHPLVAELNALPQNNMSDAEYAEAKR 46
>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins [Energy metabolism, ATP-proton
motive force interconversion].
Length = 440
Score = 30.4 bits (69), Expect = 2.4
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 192 VKGVVDSEDIPLNLSRELLQNS--PLINKLRNV--LTTRILKFLQDRSKRDVENYLAFYK 247
V+G++D + LSR L Q P I+ L ++ L T I+ R+ R L+ YK
Sbjct: 329 VRGILDGHIV---LSRALAQRGHYPAIDVLASISRLMTAIVSEEHRRAARKFRELLSKYK 385
Query: 248 DYSLFIKEGI 257
D I+ G
Sbjct: 386 DNEDLIRIGA 395
>gnl|CDD|107309 cd06314, PBP1_tmGBP, Periplasmic sugar-binding domain of Thermotoga
maritima glucose-binding protein (tmGBP) and its close
homologs. Periplasmic sugar-binding domain of
Thermotoga maritima glucose-binding protein (tmGBP) and
its close homologs from other bacteria. They are a
member of the type I periplasmic binding protein
superfamily which consists of two domains connected by a
three-stranded hinge. TmGBP is specific for glucose and
its binding pocket is buried at the interface of the two
domains. TmGBP also exhibits high thermostability and
the highest structural similarity to E. coli glucose
binding protein (ecGBP).
Length = 271
Score = 29.3 bits (66), Expect = 4.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 450 KHPVIKKLASLSSSN-PALAELVVQQLFSNAMVVAGLVEDPRTI 492
HP +K + L + N PA+AE V + + G EDP T+
Sbjct: 176 AHPDLKCMFGLYAYNGPAIAEAVKAAGKLGKVKIVGFDEDPDTL 219
>gnl|CDD|217499 pfam03336, Pox_C4_C10, Poxvirus C4/C10 protein.
Length = 335
Score = 28.9 bits (65), Expect = 5.7
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 341 LLQLRSFQNFNLTSVEKEMRQ------------DKEEDKSGQILGPDSLPSSDADKLVSW 388
+L++ F + ++ E+ + D E KS Q++ +SL KL +
Sbjct: 1 ILRIHIFSDDEFDDIKNEIIELLNTNYSESKIFDVYECKSKQVVLENSLNEDIISKLRNL 60
Query: 389 IEEKMKNKVHSVKITTKL 406
I +++KN V V + +
Sbjct: 61 IYDELKNVVDDVCVENDV 78
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 28.9 bits (65), Expect = 7.5
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Query: 70 SVKLEEHVEFYRYISNSNDQPRFVLHYRTGNL 101
+V+L E +FYR +S + P F L +RTG+L
Sbjct: 68 AVELRE--DFYRQLSRQH--PEFYLRHRTGDL 95
>gnl|CDD|150220 pfam09475, Dot_icm_IcmQ, Dot/Icm secretion system protein
(dot_icm_IcmQ). Proteins in this entry are the IcmQ
component of Dot/Icm secretion systems, as found in the
obligate intracellular pathogens Legionella pneumophila
and Coxiella burnetii. While this system resembles type
IV secretion systems and has been called a form of type
IV, the literature now seems to favour calling this the
Dot/Icm system. This protein was shown to be essential
for translocation.
Length = 179
Score = 28.0 bits (63), Expect = 8.2
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 20/75 (26%)
Query: 29 FADEQTVLNVIRKYSNFVNSP---IFVNDN-----QTNKI------QPLWIMEPKSVKLE 74
+A+E+ V N+I+ N +N I++N + +K +PL ++ +++ LE
Sbjct: 98 YANEEDVKNLIKSKENKINEAYVAIYINQSDILSVSPDKTPTDKLGKPLLTLKDRAINLE 157
Query: 75 EHVEF------YRYI 83
F Y Y+
Sbjct: 158 NITRFVHQSGVYHYV 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.379
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,950,510
Number of extensions: 2450480
Number of successful extensions: 2317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2287
Number of HSP's successfully gapped: 41
Length of query: 492
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 391
Effective length of database: 6,457,848
Effective search space: 2525018568
Effective search space used: 2525018568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)