RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15896
(492 letters)
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 483 bits (1246), Expect = e-166
Identities = 138/494 (27%), Positives = 240/494 (48%), Gaps = 42/494 (8%)
Query: 1 SGTYEITECPTAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVNDNQTNKI 60
G Y + + ++GT+I +HL+ EF D+ V ++I KYS+ + P+ + +
Sbjct: 159 EGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREE--- 215
Query: 61 QPLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTGNLPLWIMEPKSVKLEEHVEFY 120
+ ++V E + N LW + EE+ EFY
Sbjct: 216 -----KDGETVISWEKI-------NKAQ-------------ALWTRNKSEITDEEYKEFY 250
Query: 121 RYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKPGLFEMSRETEVGVSLYTRRILIKAK 180
++I++ + P H R + S+LY P P +R+ + G+ LY +R+ I
Sbjct: 251 KHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDM-WNRDHKHGLKLYVQRVFIMDD 309
Query: 181 AENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLRNVLTTRILKFLQDRSKRDVE 240
AE +P +LRFV+G++DS D+PLN+SRE+LQ+S + LRN LT R+L+ L+ +K D E
Sbjct: 310 AEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAE 369
Query: 241 NYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQE-AGTLITLPEYIEKLGEGQ 299
Y F++ + L +KEG D +E IAKLLR+ S+ + + ++L +Y+ ++ EGQ
Sbjct: 370 KYQTFWQQFGLVLKEGPAE--DFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQ 427
Query: 300 KDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDELILLQLRSFQNFNLTSVEKEM 359
+ IYY+ A S A A SSP+LE LR++ ++VL + DE ++ L F SV K
Sbjct: 428 EKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVD 487
Query: 360 RQ-DKEEDKSGQILGPDSLPSSDADKLVSWIEEKMKNKVHSVKITTKLDSHPCVVTVEEM 418
+K D+ + + ++ + +V V++T +L P +V+ +
Sbjct: 488 ESLEKLADEVDE---SAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDAD 544
Query: 419 AAARHFLKTQSQNLNEEQRFSLLQPRLEINPKHPVIKKLASLSSSNPALAELVVQQLFSN 478
+ K + Q+ ++ E+NP H ++K+ A + + A V+ L
Sbjct: 545 EMSTQMAKLFAAA---GQKVPEVKYIFELNPDHVLVKRAA--DTEDEAKFSEWVELLLDQ 599
Query: 479 AMVVAG-LVEDPRT 491
A++ +EDP
Sbjct: 600 ALLAERGTLEDPNL 613
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 443 bits (1141), Expect = e-151
Identities = 125/433 (28%), Positives = 216/433 (49%), Gaps = 38/433 (8%)
Query: 1 SGTYEITECPTAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVNDNQTNKI 60
G Y + + ++GT+I +HL+ EF D+ V ++I KYS+ + P+ + +
Sbjct: 159 EGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEK-- 216
Query: 61 QPLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTGNLPLWIMEPKSVKLEEHVEFY 120
+ ++V E + N LW + EE+ EFY
Sbjct: 217 ------DGETVISWEKI---------NKAQ-----------ALWTRNKSEITDEEYKEFY 250
Query: 121 RYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKPGLFEM-SRETEVGVSLYTRRILIKA 179
++I++ + P H R + S+LY P P ++M +R+ + G+ LY +R+ I
Sbjct: 251 KHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAP--WDMWNRDHKHGLKLYVQRVFIMD 308
Query: 180 KAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLRNVLTTRILKFLQDRSKRDV 239
AE +P +LRFV+G++DS D+PLN+SRE+LQ+S + LRN LT R+L+ L+ +K D
Sbjct: 309 DAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDA 368
Query: 240 ENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQE-AGTLITLPEYIEKLGEG 298
E Y F++ + L +KEG D +E IAKLLR+ S+ + + ++L +Y+ ++ EG
Sbjct: 369 EKYQTFWQQFGLVLKEGPAE--DFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEG 426
Query: 299 QKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDELILLQLRSFQNFNLTSVEKE 358
Q+ IYY+ A S A A SSP+LE LR++ ++VL + DE ++ L F SV K
Sbjct: 427 QEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKV 486
Query: 359 MRQ-DKEEDKSGQILGPDSLPSSDADKLVSWIEEKMKNKVHSVKITTKLDSHPCVVTVEE 417
+K D+ + + ++ + +V V++T +L P +V+ +
Sbjct: 487 DESLEKLADEVDE---SAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDA 543
Query: 418 MAAARHFLKTQSQ 430
+ K +
Sbjct: 544 DEMSTQMAKLFAA 556
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 413 bits (1064), Expect = e-138
Identities = 133/505 (26%), Positives = 244/505 (48%), Gaps = 49/505 (9%)
Query: 1 SGTYEITECP--TAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVNDNQTN 58
+ I + T +GT I + LK + ++ + T+ N+++KYS F+N PI+V ++T
Sbjct: 177 NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTG 236
Query: 59 KIQPLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTGNLPLWIMEPKSVKLEEHVE 118
K+V E + N P+W K V+ +E+
Sbjct: 237 G-------GGKTVWDWELM-------NDIK-------------PIWQRPSKEVEDDEYKA 269
Query: 119 FYRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKP-GLFEM-SRETEVGVSLYTRRIL 176
FY+ S +D P +H+ + ++ KS+L+ P + P GLF+ + + LY RR+
Sbjct: 270 FYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVF 329
Query: 177 IKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLRNVLTTRILKFLQDRSK 236
I +++PK+L FVKGVVDS+D+PLN+SRE LQ L+ +R L + L ++ +
Sbjct: 330 ITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIAD 389
Query: 237 RDVENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQEAGTLITLPEYIEKLG 296
+ F+K++ IK G++ D + +AKLLR++SS + +L +Y+E++
Sbjct: 390 E--KYNDTFWKEFGTNIKLGVIE--DHSNRTRLAKLLRFQSS-HHPSDITSLDQYVERMK 444
Query: 297 EGQKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDELILLQLRSFQNFNLTSVE 356
E Q IY++ SR A SSP++E L ++ +V++ EP DE + L F +V
Sbjct: 445 EKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVA 504
Query: 357 KEMRQDKEEDKSGQILGPDSLPSSDADKLVSWIEEK-MKNKVHSVKITTKLDSHPCVVTV 415
KE + E +K+ + + + L++W+++K +K+K+ ++ +L PC +
Sbjct: 505 KEGVKFDESEKTKE---SREAIEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVA 561
Query: 416 EEM---AAARHFLKTQSQNLNEE---QRFSLLQPRLEINPKHPVIKKLASLSSSNP--AL 467
+ +K Q+ ++ ++ + EINP+HP+IK + +
Sbjct: 562 SQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKT 621
Query: 468 AELVVQQLFSNAMVVAGL-VEDPRT 491
+ LF A + +G + D +
Sbjct: 622 VSDLAVVLFETATLRSGYLLPDTKA 646
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 340 bits (875), Expect = e-110
Identities = 139/517 (26%), Positives = 255/517 (49%), Gaps = 36/517 (6%)
Query: 1 SGTYEITECPTAEK---GTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFV----- 52
G++ +T E+ GT + + LK D E+ +E+ + VI+++S FV PI +
Sbjct: 153 GGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKE 212
Query: 53 -----------NDNQTNKIQPLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTGN- 100
++ K + + K KLEE E + V N
Sbjct: 213 VEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNK 272
Query: 101 -LPLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKPGLFE 159
PLW P + EE+ FY+ ISN + P +V H+ + L +++L+ P+ P
Sbjct: 273 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLF 332
Query: 160 MSRETEVGVSLYTRRILIKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKL 219
S++ + + LY RR+ I +AE+++P+WL FVKGVVDSED+PLNLSRE+LQ + ++ +
Sbjct: 333 ESKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVI 392
Query: 220 RNVLTTRILKFLQDRSKRDVENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSE 279
R + ++++ + ++ D E + FY +S IK G+ +D + +AKLLRY S+
Sbjct: 393 RKNIVKKLIEAFNEIAE-DSEQFEKFYSAFSKNIKLGVH--EDTQNRAALAKLLRYNST- 448
Query: 280 QEAGTLITLPEYIEKLGEGQKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDEL 339
+ L +L +Y+ ++ E QK+IYY+ S SP+L+AL+ + +VLF +P DE
Sbjct: 449 KSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEY 508
Query: 340 ILLQLRSFQNFNLTSVEKEMRQDKEEDKSGQILGPDSLPSSDADKLVSWIEEKMKNKVHS 399
QL+ F+ L + K+ ++ +++ + + + L ++E + ++V
Sbjct: 509 AFTQLKEFEGKTLVDITKDFELEETDEEKAE----REKEIKEYEPLTKALKEILGDQVEK 564
Query: 400 VKITTKLDSHPCVVTVEE---MAAARHFLKTQSQNLNEEQRFSLLQPRLEINPKHPVIKK 456
V ++ KL P + + A +K Q+ + + + EI+PK P+IK+
Sbjct: 565 VVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKE 624
Query: 457 LASL---SSSNPALAELVVQQLFSNAMVVAG-LVEDP 489
L + + + + L+ A++ +G +++P
Sbjct: 625 LKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEP 661
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 306 bits (787), Expect = e-100
Identities = 120/397 (30%), Positives = 215/397 (54%), Gaps = 19/397 (4%)
Query: 102 PLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKP-GLFEM 160
PLW P + EE+ FY+ ISN + P +V H+ + L +++L+ P+ P LFE
Sbjct: 3 PLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE- 61
Query: 161 SRETEVGVSLYTRRILIKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLR 220
S++ + + LY RR+ I +AE+++P+WL FVKGVVDSED+PLNLSRE+LQ + ++ +R
Sbjct: 62 SKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIR 121
Query: 221 NVLTTRILKFLQDRSKRDVENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQ 280
+ ++++ + ++ D E + FY +S IK G+ +D + +AKLLRY S+ +
Sbjct: 122 KNIVKKLIEAFNEIAE-DSEQFEKFYSAFSKNIKLGVH--EDTQNRAALAKLLRYNST-K 177
Query: 281 EAGTLITLPEYIEKLGEGQKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDELI 340
L +L +Y+ ++ E QK+IYY+ S SP+L+AL+ + +VLF +P DE
Sbjct: 178 SVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYA 237
Query: 341 LLQLRSFQNFNLTSVEKEMR-QDKEEDKSGQILGPDSLPSSDADKLVSWIEEKMKNKVHS 399
QL+ F+ L + K+ ++ +E+K+ + + + L ++E + ++V
Sbjct: 238 FTQLKEFEGKTLVDITKDFELEETDEEKAER-----EKEIKEYEPLTKALKEILGDQVEK 292
Query: 400 VKITTKLDSHPCVVTVEE---MAAARHFLKTQSQNLNEEQRFSLLQPRLEINPKHPVIKK 456
V ++ KL P + + A +K Q+ + + + EI+PK P+IK+
Sbjct: 293 VVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKE 352
Query: 457 LASLSSSNPALAELV---VQQLFSNAMVVAGL-VEDP 489
L A + V + L+ A++ +G +++P
Sbjct: 353 LKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEP 389
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 308 bits (790), Expect = e-100
Identities = 119/398 (29%), Positives = 216/398 (54%), Gaps = 21/398 (5%)
Query: 102 PLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKP-GLFEM 160
P+W P + EE+ EFY+ ++N + V H+ + L +++L+ P P LFE
Sbjct: 5 PIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFE- 63
Query: 161 SRETEVGVSLYTRRILIKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLR 220
+R+ + + LY RR+ I E ++P++L F++GVVDSED+PLN+SRE+LQ S ++ +R
Sbjct: 64 NRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIR 123
Query: 221 NVLTTRILKFLQDRSKRDVENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQ 280
L + L+ + ++ D ENY FY+ +S IK GI +D ++++++LLRY +S
Sbjct: 124 KNLVKKCLELFTELAE-DKENYKKFYEQFSKNIKLGIH--EDSQNRKKLSELLRYYTSAS 180
Query: 281 EAGTLITLPEYIEKLGEGQKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDELI 340
+++L +Y ++ E QK IYY+ ++ +S ++E LR+ ++V++ EP DE
Sbjct: 181 G-DEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYC 239
Query: 341 LLQLRSFQNFNLTSVEKE---MRQDKEEDKSGQILGPDSLPSSDADKLVSWIEEKMKNKV 397
+ QL+ F+ L SV KE + +D+EE K + + + L +++ ++ KV
Sbjct: 240 VQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEK------KTKFENLCKIMKDILEKKV 293
Query: 398 HSVKITTKLDSHPCVVTVEEM---AAARHFLKTQSQNLNEEQRFSLLQPRLEINPKHPVI 454
V ++ +L + PC + A +K Q+ N + + LEINP H +I
Sbjct: 294 EKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSII 353
Query: 455 KKLASLSSSNP--ALAELVVQQLFSNAMVVAG-LVEDP 489
+ L + ++ + +V L+ A++ +G +EDP
Sbjct: 354 ETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDP 391
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 301 bits (773), Expect = 6e-98
Identities = 119/398 (29%), Positives = 220/398 (55%), Gaps = 21/398 (5%)
Query: 102 PLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKP-GLFEM 160
PLW +PK V EE+ FY+ ISN + P H+ + L +S+++ P+ P +FE
Sbjct: 21 PLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEP 80
Query: 161 SRETEVGVSLYTRRILIKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLR 220
+++ + LY RR+ I E++ P WL FVKGVVDSED+PLN+SRE LQ + ++ +R
Sbjct: 81 NKKRN-NIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIR 139
Query: 221 NVLTTRILKFLQDRSKRDVENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQ 280
+ + L+ + ++ + E+Y FY+ + IK GI +D ++++ +LLR+ S+E
Sbjct: 140 KNIVKKCLEMFDEVAE-NKEDYKQFYEQFGKNIKLGIH--EDTANRKKLMELLRFYSTES 196
Query: 281 EAGTLITLPEYIEKLGEGQKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDELI 340
+ TL +Y+ ++ GQK IYY+ S+ +SP++E R R ++VLF EP DE +
Sbjct: 197 GEE-MTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYV 255
Query: 341 LLQLRSFQNFNLTSVEKE---MRQDKEEDKSGQILGPDSLPSSDADKLVSWIEEKMKNKV 397
+ Q++ F++ + KE + +EE + + + +KL ++E + +KV
Sbjct: 256 MQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEE------KAACEKLCKTMKEVLGDKV 309
Query: 398 HSVKITTKLDSHPCVVTVEE--MAAA-RHFLKTQSQNLNEEQRFSLLQPRLEINPKHPVI 454
V ++ +L + PC++ E +A ++ Q+ + ++ + + +E+NP+HP+I
Sbjct: 310 EKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPII 369
Query: 455 KKLASLSSSNP--ALAELVVQQLFSNAMVVAGL-VEDP 489
K+L ++ + +V LF +++ +G +EDP
Sbjct: 370 KELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDP 407
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 266 bits (681), Expect = 5e-86
Identities = 101/305 (33%), Positives = 165/305 (54%), Gaps = 12/305 (3%)
Query: 102 PLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKPGLFEM- 160
LW + EE+ EFY++I++ + P H R + S+LY P P ++M
Sbjct: 4 ALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAP--WDMW 61
Query: 161 SRETEVGVSLYTRRILIKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLR 220
+R+ + G+ LY +R+ I AE +P +LRFV+G++DS D+PLN+SRE+LQ+S + LR
Sbjct: 62 NRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLR 121
Query: 221 NVLTTRILKFLQDRSKRDVENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQ 280
N LT R+L+ L+ +K D E Y F++ + L +KEG +D +E IAKLLR+ S+
Sbjct: 122 NALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPA--EDFANQEAIAKLLRFASTHT 179
Query: 281 EAGT-LITLPEYIEKLGEGQKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDEL 339
++ ++L +Y+ ++ EGQ+ IYY+ A S A A SSP+LE LR++ ++VL + DE
Sbjct: 180 DSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEW 239
Query: 340 ILLQLRSFQNFNLTSVEKE-MRQDKEEDKSGQILGPDSLPSSDADKLVSWIEEKMKNKVH 398
++ L F SV K +K D L P + + +
Sbjct: 240 MMNYLTEFDGKPFQSVSKVDESLEKLADGDLGTLVPR-----GSMAISDPNSSSVDKLAA 294
Query: 399 SVKIT 403
+++
Sbjct: 295 ALEHH 299
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator,
HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8
PDB: 1usv_A
Length = 260
Score = 252 bits (647), Expect = 2e-81
Identities = 94/259 (36%), Positives = 155/259 (59%), Gaps = 6/259 (2%)
Query: 102 PLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKP-GLFEM 160
PLW P + EE+ FY+ ISN + P +V H+ + L +++L+ P+ P LFE
Sbjct: 5 PLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE- 63
Query: 161 SRETEVGVSLYTRRILIKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLR 220
S++ + + LY RR+ I +AE+++P+WL FVKGVVDSED+PLNLSRE+LQ + ++ +R
Sbjct: 64 SKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIR 123
Query: 221 NVLTTRILKFLQDRSKRDVENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQ 280
+ ++++ + ++ D E + FY +S IK G+ +D + +AKLLRY S++
Sbjct: 124 KNIVKKLIEAFNEIAE-DSEQFEKFYSAFSKNIKLGVH--EDTQNRAALAKLLRYNSTKS 180
Query: 281 EAGTLITLPEYIEKLGEGQKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDELI 340
L +L +Y+ ++ E QK+IYY+ S SP+L+AL+ + +VLF +P DE
Sbjct: 181 V-DELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYA 239
Query: 341 LLQLRSFQNFNLTSVEKEM 359
QL+ F+ L + K+
Sbjct: 240 FTQLKEFEGKTLVDITKDF 258
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 251 bits (644), Expect = 8e-81
Identities = 94/267 (35%), Positives = 160/267 (59%), Gaps = 6/267 (2%)
Query: 102 PLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKP-GLFEM 160
PLW P + EE+ FY+ ISN + P +V H+ + L +++L+ P+ P LFE
Sbjct: 3 PLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE- 61
Query: 161 SRETEVGVSLYTRRILIKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLR 220
S++ + + LY RR+ I +AE+++P+WL FVKGVVDSED+PLNLSRE+LQ + ++ +R
Sbjct: 62 SKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIR 121
Query: 221 NVLTTRILKFLQDRSKRDVENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQ 280
+ ++++ + ++ D E + FY +S IK G+ +D + +AKLLRY S+ +
Sbjct: 122 KNIVKKLIEAFNEIAE-DSEQFEKFYSAFSKNIKLGVH--EDTQNRAALAKLLRYNST-K 177
Query: 281 EAGTLITLPEYIEKLGEGQKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDELI 340
L +L +Y+ ++ E QK+IYY+ S SP+L+AL+ + +VLF +P DE
Sbjct: 178 SVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYA 237
Query: 341 LLQLRSFQNFNLTSVEKEMRQDKEEDK 367
QL+ F+ L + K+ ++ +++
Sbjct: 238 FTQLKEFEGKTLVDITKDFELEETDEE 264
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural
genomics consortium, SGC, HE protein, chaperone; 2.28A
{Homo sapiens}
Length = 268
Score = 250 bits (641), Expect = 1e-80
Identities = 87/258 (33%), Positives = 153/258 (59%), Gaps = 6/258 (2%)
Query: 102 PLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKP-GLFEM 160
P+W P + EE+ EFY+ ++N + V H+ + L +++L+ P P LFE
Sbjct: 5 PIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFE- 63
Query: 161 SRETEVGVSLYTRRILIKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKLR 220
+++ + + LY RR+ I + ++P++L F++GVVDSED+PLN+SRE+LQ S ++ +R
Sbjct: 64 NKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIR 123
Query: 221 NVLTTRILKFLQDRSKRDVENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSEQ 280
+ + L+ + ++ D ENY FY+ +S +K GI +D + +++LLRY +S+
Sbjct: 124 KNIVKKCLELFSELAE-DKENYKKFYEAFSKNLKLGIH--EDSTNRRRLSELLRYHTSQS 180
Query: 281 EAGTLITLPEYIEKLGEGQKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDELI 340
+ +L EY+ ++ E QK IYY+ S+ +S ++E +R+R +V++ EP DE
Sbjct: 181 G-DEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYC 239
Query: 341 LLQLRSFQNFNLTSVEKE 358
+ QL+ F +L SV KE
Sbjct: 240 VQQLKEFDGKSLVSVTKE 257
>1y6z_A Heat shock protein, putative; chaperone, structural genomics,
structural genom consortium, SGC, unknown function;
1.88A {Plasmodium falciparum}
Length = 263
Score = 245 bits (628), Expect = 9e-79
Identities = 79/261 (30%), Positives = 135/261 (51%), Gaps = 7/261 (2%)
Query: 102 PLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRTDAPLSIKSVLYFPETKP-GLFE- 159
P+W + KS+ ++ FY+ + D P +H+ + +S S+LY P + P L +
Sbjct: 5 PIWKQDEKSLTENDYYSFYKNTFKAYDDPLAYVHFNVEGQISFNSILYIPGSLPWELSKN 64
Query: 160 MSRETEVGVSLYTRRILIKAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPLINKL 219
M E G+ LY +R+ I K +P+WL F++G+VDSE++PLN+ RE+LQ S +++ +
Sbjct: 65 MFDEESRGIRLYVKRVFINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSII 124
Query: 220 RNVLTTRILKFLQDRSKRDVENYLAFYKDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSE 279
+ + + ++ + + + F + ++K G+V +D +EEIA L+ + S
Sbjct: 125 NKRIVLKSISMMKGLKETGGDKWTKFLNTFGKYLKIGVV--EDKENQEEIASLVEFYSIN 182
Query: 280 QEAGTLITLPEYIEKLGEGQKDIYYLCAPSRALALSSPYLEALRERKVQVLFCYEPHDEL 339
L YIE + E QK IYY+ ++ A +SP LE L+ VLF EP DE
Sbjct: 183 SGDK-KTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPIDEF 241
Query: 340 ILLQL--RSFQNFNLTSVEKE 358
L L ++ + + V K
Sbjct: 242 CLSSLTVNKYKGYEVLDVNKA 262
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 106 bits (266), Expect = 5e-26
Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 1 SGTYEITECPTAEK---GTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVNDNQT 57
+ I + P GT+I +HLK D +++ ++++I KYS F+ PI++
Sbjct: 174 DAKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENV 233
Query: 58 NKIQPLWIMEPKSVKLEEHVEFYRYISNSNDQPRFVLHYRT 98
+ L + V + ++ ++ + +
Sbjct: 234 YTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKV 274
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface,
exposed amphipathic helix, three stranded beta sheet;
2.60A {Escherichia coli} SCOP: d.271.1.1
Length = 126
Score = 68.0 bits (167), Expect = 3e-14
Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 381 DADKLVSWIEEKMKNKVHSVKITTKLDSHPCVVTVEE--MAAA-RHFLKTQSQNLNEEQR 437
+ ++ + +V V++T +L P +V+ + M+ Q + E +
Sbjct: 9 HHGSFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKY 68
Query: 438 FSLLQPRLEINPKHPVIKKLASLSSSNPALAELVVQQLFSNAMVVAGL-VEDPRT 491
E+NP H ++K+ A + + A V+ L A++ +EDP
Sbjct: 69 I------FELNPDHVLVKRAA--DTEDEAKFSEWVELLLDQALLAERGTLEDPNL 115
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A
{Escherichia coli}
Length = 235
Score = 70.7 bits (174), Expect = 4e-14
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 2 GTYEITECPTAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVN 53
G Y + + ++GT+I +HL+ EF D+ V ++I KYS+ + P+ +
Sbjct: 180 GEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIE 231
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding,
phosphoprotein, stress respo nucleotide-binding; HET:
RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A*
2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A*
2ygf_A* 2akp_A
Length = 220
Score = 67.1 bits (165), Expect = 6e-13
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 1 SGTYEITECPTAEK---GTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFV 52
G++ +T E+ GT + + LK D E+ +E+ + VI+++S FV PI +
Sbjct: 153 GGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQL 207
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 67.6 bits (166), Expect = 7e-13
Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 20/103 (19%)
Query: 2 GTYEITEC--PTAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVN------ 53
I + T +GT I + LK + ++ + T+ N+++KYS F+N PI+V
Sbjct: 161 EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTET 220
Query: 54 ------------DNQTNKIQPLWIMEPKSVKLEEHVEFYRYIS 84
+ + + + E + K + + + +
Sbjct: 221 VEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVW 263
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics,
structura genomics consortium, SGC, stress response;
HET: AN2; 2.01A {Plasmodium falciparum}
Length = 272
Score = 67.3 bits (164), Expect = 1e-12
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 1 SGTYEITECPTAEK--------GTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFV 52
G++ + E ++ GTKI++HLK +C E+ ++ + +I+KYS F+ PI +
Sbjct: 210 KGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKYSEFIKFPIEI 269
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug
design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP:
d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Length = 264
Score = 65.4 bits (160), Expect = 4e-12
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 2 GTYEITECP--TAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVNDNQTNK 59
G++ + +GTK+++HLK D E+ +E+ + +++K+S F+ PI + +
Sbjct: 196 GSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERD 255
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone
inhibitor complex; HET: 7PP; 2.20A {Homo sapiens}
Length = 239
Score = 64.9 bits (159), Expect = 4e-12
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 2 GTYEITEC--PTAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVNDNQTNK 59
G++ + +GTK+++HLK D E+ +E+ V V++K+S F+ PI + + +
Sbjct: 167 GSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKERE 226
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor
complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A*
2fwy_A* 2h55_A*
Length = 256
Score = 65.0 bits (159), Expect = 6e-12
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 2 GTYEITECP--TAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVNDNQTNK 59
G++ + +GTK+++HLK D E+ +E+ + +++K+S F+ PI + +
Sbjct: 188 GSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERD 247
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo
sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A*
1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A*
1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A*
2vci_A* ...
Length = 228
Score = 64.5 bits (158), Expect = 6e-12
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 2 GTYEITECP--TAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVNDNQTNK 59
G++ + +GTK+++HLK D E+ +E+ + +++K+S F+ PI + +
Sbjct: 160 GSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERD 219
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA,
NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus
familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A*
1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A*
1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Length = 236
Score = 64.5 bits (158), Expect = 6e-12
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 2 GTYEITEC--PTAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVNDNQTNK 59
I + T +GT I + LK + ++ + T+ N+++KYS F+N PI+V ++T
Sbjct: 165 EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGG 224
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 8e-12
Identities = 78/568 (13%), Positives = 172/568 (30%), Gaps = 156/568 (27%)
Query: 5 EITECPTAEKGTKIVIHLKADCREFADEQTVLNVIRKYSNFVNSPIFVNDNQTNKI---- 60
I A GT + +E ++ V V+R F+ SPI Q + +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 61 ----QPLW----IMEPKSV-KLEEHVEFYRYISNSNDQPRFVLHYRTG------------ 99
L+ + +V +L+ +++ + + ++ G
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 100 ------NLP---LWI-----MEPKSVKLEEHVEFYRYI-SNSNDQPRFVLHYRT---DAP 141
+ W+ P++V LE + I N + + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 142 LSIKSVLYFPETKPGL--------------FEM-------SRETEV----GVSLYTRRIL 176
++ +L + L F + +R +V + T L
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 177 I-------KAKAENILPKWLRFVKGVVDSEDIPLNLSRELLQNSPL-IN----KLRNVLT 224
+ +++L K+L +D+P RE+L +P ++ +R+ L
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLD-----CRPQDLP----REVLTTNPRRLSIIAESIRDGLA 342
Query: 225 T--RILKFLQDRSKRDVENYL---------AFYKDYSLFIKEGIVTTQDVHEKEEIAKLL 273
T D+ +E+ L + S+F H + L+
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-------SAHIPTILLSLI 395
Query: 274 RYESSEQEAGTLIT-LPEY--IEKLGEGQKDIYYLCAPSRALALSSPYLEALRER---KV 327
++ + + ++ L +Y +EK + ++ + + L + AL
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEK--QPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 328 QVLFCYEPHDELILLQLR----SFQNFNLTSVEKEMRQDKEEDKSGQILGPDSLPSSDAD 383
+ ++ D LI L S +L K + + + D
Sbjct: 454 NIPKTFDSDD-LIPPYLDQYFYSHIGHHL----KNIEHPERMTLFRMVF---------LD 499
Query: 384 KLVSWIEEKMKNKVHSVKITTKL---------------DSHPCVVTVEEMAAA-RHFLKT 427
++E+K+++ + + + D+ P E + A FL
Sbjct: 500 --FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP---KYERLVNAILDFLPK 554
Query: 428 QSQNLNEEQRFSLLQPRLEINPKHPVIK 455
+NL + LL+ L + + +
Sbjct: 555 IEENLICSKYTDLLRIAL-MAEDEAIFE 581
Score = 58.7 bits (141), Expect = 3e-09
Identities = 64/414 (15%), Positives = 119/414 (28%), Gaps = 146/414 (35%)
Query: 163 ETEVGVSLYTRRILIKAKAENILPKWLR-FVKGVVDSEDIPLNLSRELLQNSPLINKLRN 221
+ E G Y + +IL + FV D +D+ + ++
Sbjct: 8 DFETGEHQYQYK--------DILSVFEDAFVDNF-DCKDVQ--------------DMPKS 44
Query: 222 VLTT-----------------RILKFLQDRSKRDVENYL--AFYKDYSLFIKEGIVTTQD 262
+L+ R+ L + + V+ ++ +Y F+ I
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPI----- 98
Query: 263 VHEKEEIAKLLRYESSEQEAGTL-----------ITLPEYIEKLGEGQKDIYYLCAPSRA 311
+ E+ + ++ L ++ + KL ++ + L P++
Sbjct: 99 --KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLEL-RPAKN 152
Query: 312 LAL--------SSPYLEALRERKVQVLF-----------CYEPHDELILLQLRSFQ-NFN 351
+ + + L+ KVQ C P L +LQ +Q + N
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 352 LTSVEKEM-----RQDKEEDKSGQIL----GPDSLPSSDADKLV------SWIEEKMKNK 396
TS R + + ++L + L LV +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-------LVLLNVQNAKAWNAFNLS 265
Query: 397 VHSVKITTKLDSHPCVVTVEEMAAARHF-LKTQSQNLNEEQRFSLLQ----------PR- 444
+ +TT+ V A H L S L ++ SLL PR
Sbjct: 266 CKIL-LTTR-FK--QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 445 -LEINP--------------------KHPVIKKLAS-LSSSNPALAELVVQQLF 476
L NP KH KL + + SS L +++F
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 3e-10
Identities = 83/512 (16%), Positives = 142/512 (27%), Gaps = 180/512 (35%)
Query: 67 EPKSVKLEEHVEFY-RYISNSNDQPRFVLHYRTGNLPLWIMEPKSVKLEEHV------EF 119
EP + E +++ +V +EP V + V EF
Sbjct: 53 EPTTP-----AELVGKFLG-------YVSSL---------VEPSKVGQFDQVLNLCLTEF 91
Query: 120 YRYISNSNDQPRFVLHYRTDAPLSI---KSVL--YF--------PETKPG---LFEMSRE 163
ND + ++ K ++ Y P K LF E
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 164 TEVGVSLYTRRILIKAKAE-----NILPKW--LR--------FVKGVVDSEDIPL-NLSR 207
L A N + LR V ++ L L R
Sbjct: 152 GNA--QLV---------AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 208 ELLQNSPLINKLRNVLTTRILKFLQDRSKRDVENYLAFYKDYSLFIKEGIVTTQDVHEKE 267
L + + N IL++L++ S ++YL S I Q H
Sbjct: 201 TTLDAEKVFTQGLN-----ILEWLENPSNTPDKDYLLSIP-ISC---PLIGVIQLAH--- 248
Query: 268 EIAKLLRYESSEQEAGTLITLPEYIEKL----GEGQKDIYYLCAPSRALALSSPYLEALR 323
Y + + G T E L G Q + + A + A S
Sbjct: 249 -------YVVTAKLLG--FTPGELRSYLKGATGHSQ-GL--VTAVAIAETDSWESFFVSV 296
Query: 324 ERKVQVLFCYEPHDELILLQLRSFQNFNLTSVEKEMRQDKEEDKSGQILGPDSLPSS--- 380
+ + VLF + +R ++ + TS+ + +D E+ G PS
Sbjct: 297 RKAITVLF---------FIGVRCYEAYPNTSLPPSILEDSLENNEGV-------PSPMLS 340
Query: 381 ----DADKLVSWIEEKMKNKVHSVKITTKL----DSHPCVVT------------VEEMAA 420
+++ ++ + + ++ L + VV+ + + A
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL--VVSGPPQSLYGLNLTLRKAKA 398
Query: 421 ARHFLKTQSQNLNEEQ------RF---------SLLQP------------RLEINPKH-- 451
QS+ E+ RF LL P + N K
Sbjct: 399 PSG--LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 452 -PVI-----KKLASLSSSNPALAELVVQQLFS 477
PV L LS S ++E +V +
Sbjct: 457 IPVYDTFDGSDLRVLSGS---ISERIVDCIIR 485
Score = 48.5 bits (115), Expect = 5e-06
Identities = 47/287 (16%), Positives = 90/287 (31%), Gaps = 100/287 (34%)
Query: 207 RELLQNSPLINKL--------RNVLTTRILKFLQD------------RSKRDVENYLAFY 246
+L + S + ++ IL + + + KR ENY A
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM- 1691
Query: 247 KDYSLFIKEGIVTTQDVHEKEEIAKLLRYESSE---------QEAGTLITLPEY-----I 292
+ + + T + E E + + S + Q A +TL E +
Sbjct: 1692 -IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA---LTLMEKAAFEDL 1747
Query: 293 EK--------------LGEGQKDIYY--LCAPSRALALSSPYLEALRER--KVQVLFCYE 334
+ LGE Y L + + +++ S +E + R +QV
Sbjct: 1748 KSKGLIPADATFAGHSLGE------YAALASLADVMSIES-LVEVVFYRGMTMQVAV--- 1797
Query: 335 PHDELILLQLRSFQNF-----NLTSVEKEMRQDKEED-------KSGQILGP--DSLPSS 380
P DEL RS N+ N V Q+ + ++G ++ ++ +
Sbjct: 1798 PRDEL----GRS--NYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
Query: 381 --------DA-DKLVSWIEEKMKNKVHSVKITTKLDSHPCVVTVEEM 418
A D + + + K+ + I +L + VE
Sbjct: 1852 QYVAAGDLRALDTVTNVLNF---IKLQKIDI-IELQKSLSLEEVEGH 1894
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.006
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 30/60 (50%)
Query: 265 EKEEIAKLLRYESSEQEAGTLITLPEYIEKLGEGQKDIYYLCAPSRALALSSPYLEALRE 324
EK+ + KL ++S L KL Y A A AL+ ++A E
Sbjct: 18 EKQALKKL---QAS------L--------KL-------Y---ADDSAPALA---IKATME 47
Score = 34.9 bits (79), Expect = 0.024
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 5/20 (25%)
Query: 454 IKKL-ASLS----SSNPALA 468
+KKL ASL S PALA
Sbjct: 22 LKKLQASLKLYADDSAPALA 41
Score = 33.0 bits (74), Expect = 0.11
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 19/45 (42%)
Query: 107 EPKSVK-LEEHVEFYRYISNSNDQPRFVLHYRTD-AP-LSIKSVL 148
E +++K L+ ++ Y D AP L+IK+ +
Sbjct: 18 EKQALKKLQASLKLY--------AD--------DSAPALAIKATM 46
Score = 32.2 bits (72), Expect = 0.19
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 23/45 (51%)
Query: 143 SIKSV-----LYFPETKPGLFEMSRETEVGVSLYTRRILIKAKAE 182
++K + LY ++ P L IKA E
Sbjct: 21 ALKKLQASLKLYADDSAPAL------------------AIKATME 47
Score = 30.7 bits (68), Expect = 0.55
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 356 EKEMRQDKEEDKSGQILGPDSLPS 379
EK+ K+ S ++ DS P+
Sbjct: 18 EKQ--ALKKLQASLKLYADDSAPA 39
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.7
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 32/101 (31%)
Query: 274 RYESSEQEAGTLITLPEYIEKLGEGQ------KDIYYLCAPSRALALSSPYLEALRERKV 327
+ + QE PE I K E Q D A S + RE+
Sbjct: 76 QADRLTQE-------PESIRKWREEQRKRLQELD-----------AASKVMEQEWREKAK 117
Query: 328 QVL--FCYEPHDELILLQLRSFQNFNLTSVEKEMRQDKEED 366
+ L + + E Q+ + N + +K Q + D
Sbjct: 118 KDLEEW-NQRQSE----QVEKNKINNRIA-DKAFYQQPDAD 152
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan
degradation, hydrolase; HET: XYP; 1.90A {Clostridium
thermocellum} PDB: 2wze_A* 2wys_A*
Length = 540
Score = 30.0 bits (67), Expect = 2.4
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 348 QNFNLTSVEKEMRQDKEEDKSGQILGPDSLPSSDADKLVSWIEE-KMKNKVH 398
+ FN + E EM+ D +SG + + A ++++ + + + H
Sbjct: 214 REFNSITCENEMKPDATLVQSGSTNTNIRVSLNRAASILNFCAQNNIAVRGH 265
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP
domain, TSR receptor, fusion; 2.65A {Archaeoglobus
fulgidus}
Length = 341
Score = 29.7 bits (67), Expect = 2.4
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 415 VEEMAAARHFLKTQSQNLNEE-QRFSLLQPRLEINPKHPVIKKLASLSSSNPALA 468
VEE AAA L+ Q+ L E F + Q + + V+K + + A+A
Sbjct: 278 VEESAAAAAALEEQASRLTEAVAVFRIQQQQQQQRETSAVVKTVTPATPRKMAVA 332
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle,
signaling protein; 2.60A {Escherichia coli} SCOP:
h.4.5.1
Length = 227
Score = 27.6 bits (62), Expect = 7.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 415 VEEMAAARHFLKTQSQNLNE 434
VE+ AAA L+ Q+ L E
Sbjct: 198 VEQSAAAAAALEEQASRLTE 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.379
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,213,720
Number of extensions: 428447
Number of successful extensions: 1092
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1000
Number of HSP's successfully gapped: 57
Length of query: 492
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 395
Effective length of database: 3,993,456
Effective search space: 1577415120
Effective search space used: 1577415120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)